Mus	ANCESTRAL SPECIES	6	ENSGT00940000157874	ENSGT00940000157849 #7	ENSGT00940000157872 #8	ENSGT00390000018090 #9	ENSGT00900000143323.A #10	ENSGT00940000162479 #11	ENSGT00860000135683 #12	ENSGT00510000049560 #13	ENSGT00940000155360.B #14	ENSGT00940000156564 #16	ENSGT00940000155401.j #17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920 #24	ENSGT00940000157536.b #25	ENSGT01030000238791	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #28	ENSGT00730000111249 #29	ENSGT00940000155868 #31	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000161310 #33	ENSGT01030000234515.a.b.b #36	ENSGT01010000222539 #37	ENSGT00940000155528	ENSGT00390000000051
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000157874	ENSGT00940000157849 #7	ENSGT00940000157872 #8	ENSGT00390000018090 #9	ENSGT00900000143323.A #10	ENSGT00940000162479 #11	ENSGT00860000135683 #12	ENSGT00510000049560 #13	ENSGT00940000155360.B #14	ENSGT00940000156564 #16	ENSGT00940000155401.j #17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920 #24	ENSGT00940000157536.b #25	ENSGT01030000238791	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #28	ENSGT00730000111249 #29	ENSGT00900000143557 #30	ENSGT00940000155868 #31	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000161310 #33	ENSGT01030000234515.a.b.b #36	ENSGT01010000222539 #37	ENSGT00940000155528
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000157874	ENSGT00940000157849 #7	ENSGT00940000157872 #8	ENSGT00390000018090 #9	ENSGT00900000143323.A #10	ENSGT00940000162479 #11	ENSGT00860000135683 #12	ENSGT00510000049560 #13	ENSGT00940000155360.B #14	ENSGT00940000156564 #16	ENSGT00940000155401.j #17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920 #24	ENSGT00940000157536.b #25	ENSGT01030000238791	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #28	ENSGT00730000111249 #29	ENSGT00900000143557 #30	ENSGT00940000155868 #31	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000161310 #33	ENSGT00940000153805.q.b.a.a.b.a.a #35	ENSGT01030000234515.a.b.b #36	ENSGT01010000222539 #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000157874	ENSGT00940000157849 #7	ENSGT00940000157872 #8	ENSGT00390000018090 #9	ENSGT00900000143323.A #10	ENSGT00940000162479 #11	ENSGT00860000135683 #12	ENSGT00510000049560 #13	ENSGT00940000155360.B #14	ENSGT00940000156564 #16	ENSGT00940000155401.j #17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920 #24	ENSGT00940000157536.b #25	ENSGT01030000238791	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #28	ENSGT00730000111249 #29	ENSGT00900000143557 #30	ENSGT00940000155868 #31	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000161310 #33	ENSGT00940000153805.q.b.a.a.b.a.a #35	ENSGT01030000234515.a.b.b #36	ENSGT01010000222539 #37
spretus	MODERN SPECIES	17	Atp11a (MGP_SPRETEiJ_G0031937) #7	Tubgcp3 (MGP_SPRETEiJ_G0031936) #8	Spaca7 (MGP_SPRETEiJ_G0031935) #9	MGP_SPRETEiJ_G0031934 #10	Sox1 (MGP_SPRETEiJ_G0031933) #11	MGP_SPRETEiJ_G0031932 #12	Tex29 (MGP_SPRETEiJ_G0031931) #13	Arhgef7 (MGP_SPRETEiJ_G0031930) #14	Spaca7b (MGP_SPRETEiJ_G0031929) #15	Ankrd10 (MGP_SPRETEiJ_G0031928) #16	Ing1 (MGP_SPRETEiJ_G0031927) #17	Cars2 (MGP_SPRETEiJ_G0031926) #18	Naxd (MGP_SPRETEiJ_G0031925) #19	Rab20 (MGP_SPRETEiJ_G0031924) #20	MGP_SPRETEiJ_G0031923 #21	Col4a1 (MGP_SPRETEiJ_G0031922) #22	Irs2 (MGP_SPRETEiJ_G0031921) #23	Myo16 (MGP_SPRETEiJ_G0031920) #24	Tnfsf13b (MGP_SPRETEiJ_G0031919) #25	Abhd13 (MGP_SPRETEiJ_G0031918) #26	Lig4 (MGP_SPRETEiJ_G0031917) #27	Nalf1 (MGP_SPRETEiJ_G0031916) #28	Arglu1 (MGP_SPRETEiJ_G0031915) #29	MGP_SPRETEiJ_G0031914 #30	Efnb2 (MGP_SPRETEiJ_G0031913) #31	Slc10a2 (MGP_SPRETEiJ_G0031912) #32	Shcbp1 (MGP_SPRETEiJ_G0031911) #33	MGP_SPRETEiJ_G0031910 #34	Zfp958 (MGP_SPRETEiJ_G0031909) #35	Cers4 (MGP_SPRETEiJ_G0031908) #36	Ccl25 (MGP_SPRETEiJ_G0031907) #37
Steppe mouse	MODERN SPECIES	3344	ENSMSIG00000009009 #10	ENSMSIG00000009016	ENSMSIG00000009060 #12	Tex29 (ENSMSIG00000009088) #13	Arhgef7 (ENSMSIG00000009198) #14	ENSMSIG00000009396	ENSMSIG00000009425	ENSMSIG00000009432 ##10	Spaca7b (ENSMSIG00000009444) #9	Ankrd10 (ENSMSIG00000009467) #16	Ing1 (ENSMSIG00000009535) #17	Cars2 (ENSMSIG00000009552) #18	Naxd (ENSMSIG00000009660) #19	ENSMSIG00000009712 #20	Col4a2 (ENSMSIG00000009721)	Col4a1 (ENSMSIG00000009816) #22	Irs2 (ENSMSIG00000009943) #23	ENSMSIG00000009966	Myo16 (ENSMSIG00000009985) #24	Tnfsf13b (ENSMSIG00000010107) #25	ENSMSIG00000010201	Abhd13 (ENSMSIG00000010206) #26	Lig4 (ENSMSIG00000010213) #27	Nalf1 (ENSMSIG00000010229) #28	Arglu1 (ENSMSIG00000010263) #29	ENSMSIG00000010282 #30	Efnb2 (ENSMSIG00000010294) #31
Mouse	MODERN SPECIES	17	F7 (ENSMUSG00000031443)	Mcf2l (ENSMUSG00000031442)	Atp11a (ENSMUSG00000031441) #7	Tubgcp3 (ENSMUSG00000000759) #8	Spaca7 (ENSMUSG00000010435) #9	Sox1 (ENSMUSG00000096014) #11	Tex29 (ENSMUSG00000031512) #13	Arhgef7 (ENSMUSG00000031511) #14	Spaca7b (ENSMUSG00000031509) #9	Ankrd10 (ENSMUSG00000031508) #16	Ing1 (ENSMUSG00000045969) #17	Cars2 (ENSMUSG00000056228) #18	Naxd (ENSMUSG00000031505) #19	Rab20 (ENSMUSG00000031504) #20	Col4a2 (ENSMUSG00000031503)	Col4a1 (ENSMUSG00000031502) #22	Irs2 (ENSMUSG00000038894) #23	Myo16 (ENSMUSG00000039057) #24	Tnfsf13b (ENSMUSG00000031497) #25	Abhd13 (ENSMUSG00000040396) #26	Lig4 (ENSMUSG00000049717) #27	Nalf1 (ENSMUSG00000079157) #28	Arglu1 (ENSMUSG00000040459) #29	Efnb2 (ENSMUSG00000001300) #31	Slc10a2 (ENSMUSG00000023073) #32	Shcbp1 (ENSMUSG00000022322) #33	Zfp958 (ENSMUSG00000058748) #35	Cers4 (ENSMUSG00000008206) #36	Ccl25 (ENSMUSG00000023235) #37	Elavl1 (ENSMUSG00000040028)	Timm44 (ENSMUSG00000002949)
Ryukyu mouse	MODERN SPECIES	17	Mcf2l (MGP_CAROLIEiJ_G0030829)	Atp11a (MGP_CAROLIEiJ_G0030828) #7	MGP_CAROLIEiJ_G0030827	Spaca7 (MGP_CAROLIEiJ_G0030826) #9	MGP_CAROLIEiJ_G0030825 #10	Sox1 (MGP_CAROLIEiJ_G0030824) #11	MGP_CAROLIEiJ_G0030823 #12	MGP_CAROLIEiJ_G0030822 #13	MGP_CAROLIEiJ_G0030821 #14	MGP_CAROLIEiJ_G0030820 #9	Ing1 (MGP_CAROLIEiJ_G0030819) #17	Cars2 (MGP_CAROLIEiJ_G0030818) #18	Naxd (MGP_CAROLIEiJ_G0030817) #19	Rab20 (MGP_CAROLIEiJ_G0030816) #20	Col4a2 (MGP_CAROLIEiJ_G0030815)	Col4a1 (MGP_CAROLIEiJ_G0030814) #22	Irs2 (MGP_CAROLIEiJ_G0030813) #23	Myo16 (MGP_CAROLIEiJ_G0030812) #24	Tnfsf13b (MGP_CAROLIEiJ_G0030811) #25	Abhd13 (MGP_CAROLIEiJ_G0030810) #26	Lig4 (MGP_CAROLIEiJ_G0030809) #27	Nalf1 (MGP_CAROLIEiJ_G0030808) #28	Arglu1 (MGP_CAROLIEiJ_G0030807) #29	MGP_CAROLIEiJ_G0030806 #30	Efnb2 (MGP_CAROLIEiJ_G0030805) #31	Slc10a2 (MGP_CAROLIEiJ_G0030804) #32	MGP_CAROLIEiJ_G0030803	Shcbp1 (MGP_CAROLIEiJ_G0030802) #33	MGP_CAROLIEiJ_G0030801 ##35	Cers4 (MGP_CAROLIEiJ_G0030800) #36	MGP_CAROLIEiJ_G0030799 #37
Shrew mouse	MODERN SPECIES	10	Atp11a (MGP_PahariEiJ_G0021290) #7	Tubgcp3 (MGP_PahariEiJ_G0021289) #8	Spaca7 (MGP_PahariEiJ_G0021288) #9	MGP_PahariEiJ_G0021287 #10	Sox1 (MGP_PahariEiJ_G0021286) #11	MGP_PahariEiJ_G0021285 #12	MGP_PahariEiJ_G0021284 #13	Arhgef7 (MGP_PahariEiJ_G0021283) #14	Spaca7b (MGP_PahariEiJ_G0021282) #9	Ankrd10 (MGP_PahariEiJ_G0021281) #16	Ing1 (MGP_PahariEiJ_G0021280) #17	Cars2 (MGP_PahariEiJ_G0021279) #18	Naxd (MGP_PahariEiJ_G0021278) #19	Rab20 (MGP_PahariEiJ_G0021277) #20	Col4a2 (MGP_PahariEiJ_G0021276)	Col4a1 (MGP_PahariEiJ_G0021275) #22	Irs2 (MGP_PahariEiJ_G0021274) #23	Myo16 (MGP_PahariEiJ_G0021273) #24	Tnfsf13b (MGP_PahariEiJ_G0021272) #25	Abhd13 (MGP_PahariEiJ_G0021271) #26	Lig4 (MGP_PahariEiJ_G0021270) #27	Nalf1 (MGP_PahariEiJ_G0021269) #28	Arglu1 (MGP_PahariEiJ_G0021268) #29	MGP_PahariEiJ_G0021267	Efnb2 (MGP_PahariEiJ_G0021266) #31	Slc10a2 (MGP_PahariEiJ_G0021265) #32	Shcbp1 (MGP_PahariEiJ_G0021264) #33	Cers4 (MGP_PahariEiJ_G0021263) #36	MGP_PahariEiJ_G0021262 #37	Elavl1 (MGP_PahariEiJ_G0021261)	Timm44 (MGP_PahariEiJ_G0021260)