Euteleostomi	ANCESTRAL SPECIES	5		ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Sarcopterygii	ANCESTRAL SPECIES	54		ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00660000097267
Tetrapoda	ANCESTRAL SPECIES	15	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Amniota	ANCESTRAL SPECIES	12	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00940000170045	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052
Mammalia	ANCESTRAL SPECIES	22	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00940000170045	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Theria	ANCESTRAL SPECIES	13	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Eutheria	ANCESTRAL SPECIES	11	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT01100000267093	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT01100000267093	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Primates	ANCESTRAL SPECIES	17	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000153295.a.m.b.a #13	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Hominidae	ANCESTRAL SPECIES	18	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000153295.a.m.b.a #13	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000153295.a.m.b.a #13	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00910000144152.b.a.d #31	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT01090000260318	ENSGT00940000159359 #37
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000153295.a.m.b.a #13	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00910000144152.b.a.d #31	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT01090000260318	ENSGT00940000159359 #37
Pan	ANCESTRAL SPECIES	15	ENSGT00390000010355.q.a.b #7	ENSGT00390000012635.a.b #8	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000153295.a.m.b.a #13	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00910000144152.b.a.d #31	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT01090000260318	ENSGT00940000159359 #37	ENSGT00520000059926
Chimpanzee	MODERN SPECIES	11	ENSPTRG00000048319 #7	ENSPTRG00000048079 #8	MKKS (ENSPTRG00000013247) #9	SLX4IP (ENSPTRG00000013248) #10	ENSPTRG00000047563 #11	JAG1 (ENSPTRG00000013250) #12	ENSPTRG00000048365 #13	BTBD3 (ENSPTRG00000013252) #14	ENSPTRG00000043601 #15	SPTLC3 (ENSPTRG00000013255) #16	ISM1 (ENSPTRG00000013256) #17	TASP1 (ENSPTRG00000013257) #18	ESF1 (ENSPTRG00000013258) #19	NDUFAF5 (ENSPTRG00000013259) #20	SEL1L2 (ENSPTRG00000023324) #21	MACROD2 (ENSPTRG00000013261) #22	FLRT3 (ENSPTRG00000013263) #23	KIF16B (ENSPTRG00000013269) #24	ENSPTRG00000046473 #25	SNRPB2 (ENSPTRG00000013271) #26	OTOR (ENSPTRG00000013272) #27	ENSPTRG00000048715 #28	PCSK2 (ENSPTRG00000013273) #29	BFSP1 (ENSPTRG00000013274) #30	ENSPTRG00000050420 #31	DSTN (ENSPTRG00000013275) #32	RRBP1 (ENSPTRG00000013276) #33	BANF2 (ENSPTRG00000013277) #34	SNX5 (ENSPTRG00000013278) #35	MGME1 (ENSPTRG00000013279) #36	OVOL2 (ENSPTRG00000013280) #37
Bonobo	MODERN SPECIES	11	SNAP25 (ENSPPAG00000028032)	ENSPPAG00000029682 #7	ENSPPAG00000030118 #8	MKKS (ENSPPAG00000030277) #9	SLX4IP (ENSPPAG00000030976) #10	JAG1 (ENSPPAG00000034400) #12	ENSPPAG00000034357 #13	BTBD3 (ENSPPAG00000034606) #14	ENSPPAG00000036926 #15	SPTLC3 (ENSPPAG00000037658) #16	ISM1 (ENSPPAG00000038930) #17	TASP1 (ENSPPAG00000041006) #18	ESF1 (ENSPPAG00000024379) #19	NDUFAF5 (ENSPPAG00000044089) #20	SEL1L2 (ENSPPAG00000041164) #21	MACROD2 (ENSPPAG00000032282) #22	FLRT3 (ENSPPAG00000002307) #23	ENSPPAG00000017286 #24	ENSPPAG00000027109 #25	SNRPB2 (ENSPPAG00000028034) #26	OTOR (ENSPPAG00000039001) #27	PCSK2 (ENSPPAG00000039603) #29	BFSP1 (ENSPPAG00000028151) #30	ENSPPAG00000030213 #31	DSTN (ENSPPAG00000042938) #32	ENSPPAG00000035464 #33	BANF2 (ENSPPAG00000028072) #34	SNX5 (ENSPPAG00000019088) #35	MGME1 (ENSPPAG00000028989) #36	ENSPPAG00000027362	OVOL2 (ENSPPAG00000032300) #37
Human	MODERN SPECIES	12	PAK5 (ENSG00000101349)	ANKEF1 (ENSG00000132623)	SNAP25 (ENSG00000132639)	MKKS (ENSG00000125863) #9	MKKS (ENSG00000285508)	MKKS (ENSG00000285723)	SLX4IP (ENSG00000149346) #10	JAG1 (ENSG00000101384) #12	BTBD3 (ENSG00000132640) #14	SPTLC3 (ENSG00000172296) #16	ISM1 (ENSG00000101230) #17	TASP1 (ENSG00000089123) #18	ESF1 (ENSG00000089048) #19	NDUFAF5 (ENSG00000101247) #20	SEL1L2 (ENSG00000101251) #21	MACROD2 (ENSG00000172264) #22	FLRT3 (ENSG00000125848) #23	KIF16B (ENSG00000089177)	SNRPB2 (ENSG00000125870) #26	OTOR (ENSG00000125879) #27	PCSK2 (ENSG00000125851) #29	BFSP1 (ENSG00000125864) #30	DSTN (ENSG00000125868) #32	RRBP1 (ENSG00000125844) #33	BANF2 (ENSG00000125888) #34	SNX5 (ENSG00000089006) #35	OVOL2 (ENSG00000125850) #37	MGME1 (ENSG00000125871) #36	KAT14 (ENSG00000149474)	PET117 (ENSG00000232838)	ZNF133 (ENSG00000125846)
Gorilla	MODERN SPECIES	11	PAK5 (ENSGGOG00000005110)	ANKEF1 (ENSGGOG00000008079)	SNAP25 (ENSGGOG00000012265)	MKKS (ENSGGOG00000024430) #9	SLX4IP (ENSGGOG00000023204) #10	JAG1 (ENSGGOG00000011017) #12	ENSGGOG00000039844	BTBD3 (ENSGGOG00000027707) #14	ENSGGOG00000022487 #15	SPTLC3 (ENSGGOG00000012576) #16	ISM1 (ENSGGOG00000002698) #17	TASP1 (ENSGGOG00000044024) #18	ESF1 (ENSGGOG00000006692) #19	NDUFAF5 (ENSGGOG00000006702) #20	SEL1L2 (ENSGGOG00000010201) #21	MACROD2 (ENSGGOG00000038859) #22	FLRT3 (ENSGGOG00000023863) #23	ENSGGOG00000034900 #24	ENSGGOG00000039905 #25	SNRPB2 (ENSGGOG00000003937) #26	OTOR (ENSGGOG00000015413) #27	PCSK2 (ENSGGOG00000007255) #29	BFSP1 (ENSGGOG00000015082) #30	ENSGGOG00000041433 #31	ENSGGOG00000009007 #32	RRBP1 (ENSGGOG00000009013) #33	BANF2 (ENSGGOG00000004858) #34	SNX5 (ENSGGOG00000008953) #35	MGME1 (ENSGGOG00000008966) #36	ENSGGOG00000043184	OVOL2 (ENSGGOG00000024444) #37
Orangutan	MODERN SPECIES	11	LAMP5 (ENSPPYG00000010702)	PAK5 (ENSPPYG00000010703)	ANKEF1 (ENSPPYG00000010704)	SNAP25 (ENSPPYG00000010705)	ENSPPYG00000029956 #8	MKKS (ENSPPYG00000010706) #9	SLX4IP (ENSPPYG00000033814) #10	JAG1 (ENSPPYG00000010708) #12	BTBD3 (ENSPPYG00000010711) #14	SPTLC3 (ENSPPYG00000010712) #16	ISM1 (ENSPPYG00000010713) #17	TASP1 (ENSPPYG00000010714) #18	ESF1 (ENSPPYG00000010715) #19	NDUFAF5 (ENSPPYG00000010716) #20	SEL1L2 (ENSPPYG00000010717) #21	MACROD2 (ENSPPYG00000010718) #22	FLRT3 (ENSPPYG00000010719) #23	ENSPPYG00000010722 #24	SNRPB2 (ENSPPYG00000010723) #26	OTOR (ENSPPYG00000011277) #27	PCSK2 (ENSPPYG00000010725) #29	BFSP1 (ENSPPYG00000010726) #30	DSTN (ENSPPYG00000010727) #32	ENSPPYG00000010728 #33	BANF2 (ENSPPYG00000039660) #34	SNX5 (ENSPPYG00000010730) #35	MGME1 (ENSPPYG00000010731) #36	OVOL2 (ENSPPYG00000010732) #37	KAT14 (ENSPPYG00000010733)	ZNF133 (ENSPPYG00000010734)	DZANK1 (ENSPPYG00000010736)
Gibbon	MODERN SPECIES	1	PAK5 (ENSNLEG00000014377)	ANKEF1 (ENSNLEG00000014412)	SNAP25 (ENSNLEG00000014426)	MKKS (ENSNLEG00000014461) #9	SLX4IP (ENSNLEG00000014476) #10	JAG1 (ENSNLEG00000014487) #12	ENSNLEG00000030778 #13	BTBD3 (ENSNLEG00000014498) #14	ENSNLEG00000034610 ##15	SPTLC3 (ENSNLEG00000014511) #16	ISM1 (ENSNLEG00000014532) #17	TASP1 (ENSNLEG00000014537) #18	ESF1 (ENSNLEG00000014563) #19	NDUFAF5 (ENSNLEG00000014575) #20	SEL1L2 (ENSNLEG00000014593) #21	MACROD2 (ENSNLEG00000014617) #22	FLRT3 (ENSNLEG00000034917) #23	ENSNLEG00000014626 #24	ENSNLEG00000032307	GNAT3 (ENSNLEG00000014686)	CD36 (ENSNLEG00000014698)	SEMA3C (ENSNLEG00000014747)	HGF (ENSNLEG00000014770)	CACNA2D1 (ENSNLEG00000014802)	ENSNLEG00000033878	ENSNLEG00000036202	ENSNLEG00000034875	ENSNLEG00000031922	SEMA3E (ENSNLEG00000014841)	ENSNLEG00000029628	SEMA3A (ENSNLEG00000014865)
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000010355.q.a.d #7	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Rhinopithecus	ANCESTRAL SPECIES	161	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000010355.q.a.d #7	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000164713	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	2999	ANKEF1 (ENSRROG00000033311)	SNAP25 (ENSRROG00000041876)	ENSRROG00000039926 #7	MKKS (ENSRROG00000040159) #9	SLX4IP (ENSRROG00000041956) #10	JAG1 (ENSRROG00000031117) #12	BTBD3 (ENSRROG00000037043) #14	ENSRROG00000023666 #15	ENSRROG00000036842	SPTLC3 (ENSRROG00000030315) #16	ISM1 (ENSRROG00000032471) #17	TASP1 (ENSRROG00000045234) #18	ESF1 (ENSRROG00000032022) #19	NDUFAF5 (ENSRROG00000042190) #20	SEL1L2 (ENSRROG00000036744) #21	ENSRROG00000045221 #22	ENSRROG00000026978
Golden snub-nosed monkey	MODERN SPECIES	2277																ENSRROG00000014991 #22	ENSRROG00000045133 #24	SNRPB2 (ENSRROG00000031251) #26	OTOR (ENSRROG00000039826) #27	PCSK2 (ENSRROG00000027871) #29	BFSP1 (ENSRROG00000044347) #30	ENSRROG00000026257 #32	RRBP1 (ENSRROG00000028582) #33	BANF2 (ENSRROG00000037591) #34	SNX5 (ENSRROG00000030981) #35	MGME1 (ENSRROG00000037222) #36	OVOL2 (ENSRROG00000039059) #37	KAT14 (ENSRROG00000043242)
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	549															SEL1L2 (ENSRBIG00000032488) #21	ENSRBIG00000030232 #22	ENSRBIG00000034094
Black snub-nosed monkey	MODERN SPECIES	1232															ENSRBIG00000042815	ENSRBIG00000037101 #22	ENSRBIG00000041283 #24	SNRPB2 (ENSRBIG00000030319) #26	OTOR (ENSRBIG00000033630) #27	PCSK2 (ENSRBIG00000013679) #29	BFSP1 (ENSRBIG00000042400) #30	DSTN (ENSRBIG00000028601) #32	RRBP1 (ENSRBIG00000044244) #33	BANF2 (ENSRBIG00000008038) #34	SNX5 (ENSRBIG00000044195) #35	MGME1 (ENSRBIG00000044626) #36	OVOL2 (ENSRBIG00000015692) #37	PET117 (ENSRBIG00000021049)	KAT14 (ENSRBIG00000044123)
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000010355.q.a.d #7	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881.y #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00940000162838	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000010355.q.a.d #7	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881.y #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT01100000263682.c.a.a.b.b	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Macaca	ANCESTRAL SPECIES	16	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881.y #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT01100000263682.c.a.a.b.b	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881.y #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT01100000263682.c.a.a.b.b	ENSGT00940000159704 #23	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.b.a.a.b.a.b	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00980000202055.A.a.b.a.a.a	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.d	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.b.b.b.a.b	ENSGT00940000159359 #37
Crab-eating macaque	MODERN SPECIES	1	JAG1 (ENSMFAG00000033249) #12	BTBD3 (ENSMFAG00000043605) #14	ENSMFAG00000030240 #15	SPTLC3 (ENSMFAG00000044897) #16	ISM1 (ENSMFAG00000003715) #17	ENSMFAG00000050687	ENSMFAG00000065646	TASP1 (ENSMFAG00000036407) #18	ESF1 (ENSMFAG00000036841) #19	NDUFAF5 (ENSMFAG00000044840) #20	SEL1L2 (ENSMFAG00000040207) #21	ENSMFAG00000058998	ENSMFAG00000047590	FLRT3 (ENSMFAG00000029772) #23	ENSMFAG00000049859	MACROD2 (ENSMFAG00000044094) #22	EIF4A1 (ENSMFAG00000031996)	ENSMFAG00000034145 #24	ENSMFAG00000004583 #25	SNRPB2 (ENSMFAG00000031283) #26	OTOR (ENSMFAG00000052842) #27	ENSMFAG00000052648	PCSK2 (ENSMFAG00000037979) #29	BFSP1 (ENSMFAG00000035524) #30	ENSMFAG00000001053 #32	RRBP1 (ENSMFAG00000008658) #33	BANF2 (ENSMFAG00000034171) #34	ENSMFAG00000053402	ENSMFAG00000064649	ENSMFAG00000060016	SNX5 (ENSMFAG00000039729) #35
Rhesus	MODERN SPECIES	1	MKKS (ENSMMUG00000031166) #9	SLX4IP (ENSMMUG00000018114) #10	JAG1 (ENSMMUG00000018116) #12	ENSMMUG00000049395	BTBD3 (ENSMMUG00000037665) #14	SPTLC3 (ENSMMUG00000000089) #16	ISM1 (ENSMMUG00000015939) #17	ENSMMUG00000053856	TASP1 (ENSMMUG00000006519) #18	ESF1 (ENSMMUG00000062485) #19	NDUFAF5 (ENSMMUG00000012354) #20	ENSMMUG00000065331	SEL1L2 (ENSMMUG00000002202) #21	FLRT3 (ENSMMUG00000002916) #23	ENSMMUG00000055916	MACROD2 (ENSMMUG00000043649) #22	ENSMMUG00000056722	KIF16B (ENSMMUG00000009658) #24	SNRPB2 (ENSMMUG00000061754) #26	OTOR (ENSMMUG00000014494) #27	ENSMMUG00000057174	PCSK2 (ENSMMUG00000014626) #29	BFSP1 (ENSMMUG00000014632) #30	DSTN (ENSMMUG00000013786) #32	RRBP1 (ENSMMUG00000013787) #33	BANF2 (ENSMMUG00000016037) #34	ENSMMUG00000051977	SNX5 (ENSMMUG00000011476) #35	MGME1 (ENSMMUG00000011479) #36	ENSMMUG00000057191	OVOL2 (ENSMMUG00000053412) #37
Pig-tailed macaque	MODERN SPECIES	574	LAMP5 (ENSMNEG00000044400)	PAK5 (ENSMNEG00000027431)	ANKEF1 (ENSMNEG00000042363)	SNAP25 (ENSMNEG00000039803)	MKKS (ENSMNEG00000039619) #9	SLX4IP (ENSMNEG00000028042) #10	JAG1 (ENSMNEG00000038037) #12	BTBD3 (ENSMNEG00000038306) #14	ENSMNEG00000029315 #15	SPTLC3 (ENSMNEG00000032709) #16	ISM1 (ENSMNEG00000031325) #17	TASP1 (ENSMNEG00000033829) #18	ESF1 (ENSMNEG00000044042) #19	NDUFAF5 (ENSMNEG00000040246) #20	SEL1L2 (ENSMNEG00000044866) #21	ENSMNEG00000034436 #22	FLRT3 (ENSMNEG00000010345) #23
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000010355.q.a.d #7	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881.y #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT01100000263682.c.a.a.b.b	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Olive baboon	MODERN SPECIES	7	SLX4IP (ENSPANG00000007520) #10	JAG1 (ENSPANG00000004885) #12	BTBD3 (ENSPANG00000020967) #14	ENSPANG00000041219	SPTLC3 (ENSPANG00000007161) #16	ISM1 (ENSPANG00000004884) #17	ENSPANG00000039162	TASP1 (ENSPANG00000003898) #18	ESF1 (ENSPANG00000020625) #19	NDUFAF5 (ENSPANG00000022387) #20	ENSPANG00000048636	SEL1L2 (ENSPANG00000023196) #21	ENSPANG00000039587	FLRT3 (ENSPANG00000011848) #23	ENSPANG00000051084	MACROD2 (ENSPANG00000029296) #22	ENSPANG00000019915 #24	SNRPB2 (ENSPANG00000041132) #26	OTOR (ENSPANG00000009616) #27	PCSK2 (ENSPANG00000021241) #29	BFSP1 (ENSPANG00000029429) #30	DSTN (ENSPANG00000018433) #32	RRBP1 (ENSPANG00000018776) #33	BANF2 (ENSPANG00000044751) #34	SNX5 (ENSPANG00000024777) #35	MGME1 (ENSPANG00000004880) #36	OVOL2 (ENSPANG00000025538) #37	PET117 (ENSPANG00000042250)	KAT14 (ENSPANG00000019238)	ZNF133 (ENSPANG00000019240)	ENSPANG00000031749
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000010355.q.a.d #7	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000154281.m.b.a.b.a.a #15	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881.y #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00390000007046.b.a.a.w #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b.s #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.q.b.a #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00940000156170.f	ENSGT00520000059926
Sooty mangabey	MODERN SPECIES	602	SNAP25 (ENSCATG00000034170)	ENSCATG00000036492 #7	MKKS (ENSCATG00000032096) #9	SLX4IP (ENSCATG00000034174) #10	JAG1 (ENSCATG00000040447) #12	BTBD3 (ENSCATG00000028661) #14	ENSCATG00000037686 #15	SPTLC3 (ENSCATG00000034762) #16	ISM1 (ENSCATG00000041639) #17	TASP1 (ENSCATG00000030650) #18	ENSCATG00000035223	ESF1 (ENSCATG00000042792) #19	NDUFAF5 (ENSCATG00000036297) #20	SEL1L2 (ENSCATG00000034275) #21	FLRT3 (ENSCATG00000020765) #23	MACROD2 (ENSCATG00000032559) #22	ENSCATG00000001260	ENSCATG00000042020 #24	SNRPB2 (ENSCATG00000030861) #26	OTOR (ENSCATG00000034812) #27	PCSK2 (ENSCATG00000036257) #29	BFSP1 (ENSCATG00000037013) #30	DSTN (ENSCATG00000042602) #32	RRBP1 (ENSCATG00000043743) #33	BANF2 (ENSCATG00000030403) #34	SNX5 (ENSCATG00000042457) #35	MGME1 (ENSCATG00000031571) #36	OVOL2 (ENSCATG00000043699) #37	ENSCATG00000039893	PET117 (ENSCATG00000030530)	KAT14 (ENSCATG00000044790)
Drill	MODERN SPECIES	760															ENSMLEG00000017006	ENSMLEG00000027933 #22	ENSMLEG00000020362	ENSMLEG00000044380 #24	ENSMLEG00000003580 #25	SNRPB2 (ENSMLEG00000029953) #26	OTOR (ENSMLEG00000042228) #27	PCSK2 (ENSMLEG00000036656) #29	BFSP1 (ENSMLEG00000044394) #30	ENSMLEG00000035298 #32	RRBP1 (ENSMLEG00000031256) #33	BANF2 (ENSMLEG00000036277) #34	SNX5 (ENSMLEG00000033013) #35	MGME1 (ENSMLEG00000027531) #36	OVOL2 (ENSMLEG00000036617) #37	ENSMLEG00000037499	PET117 (ENSMLEG00000044298)
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000006837.f.a.b.a	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.r ##35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Mas night monkey	MODERN SPECIES	721							BTBD3 (ENSANAG00000022489) #14	SPTLC3 (ENSANAG00000027114) #16	ISM1 (ENSANAG00000029851) #17	TASP1 (ENSANAG00000020502) #18	ESF1 (ENSANAG00000036778) #19	NDUFAF5 (ENSANAG00000025436) #20	SEL1L2 (ENSANAG00000036894) #21	FLRT3 (ENSANAG00000019122) #23	ENSANAG00000034581 ##26	MACROD2 (ENSANAG00000025560) #22	ENSANAG00000038245 #24	SNRPB2 (ENSANAG00000022548) #26	OTOR (ENSANAG00000023233) #27	ENSANAG00000036026	PCSK2 (ENSANAG00000030194) #29	BFSP1 (ENSANAG00000029685) #30	DSTN (ENSANAG00000029810) #32	RRBP1 (ENSANAG00000031056) #33	BANF2 (ENSANAG00000031376) #34	ENSANAG00000003722	ENSANAG00000035768 ##35	MGME1 (ENSANAG00000032165) #36	OVOL2 (ENSANAG00000026429) #37	PET117 (ENSANAG00000035015)	KAT14 (ENSANAG00000032311)
Cebidae	ANCESTRAL SPECIES	13	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000006837.f.a.b.a	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.r ##35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Marmoset	MODERN SPECIES	17	PAK5 (ENSCJAG00000021343)	ANKEF1 (ENSCJAG00000021349)	SNAP25 (ENSCJAG00000046312)	MKKS (ENSCJAG00000021355) #9	SLX4IP (ENSCJAG00000021356) #10	JAG1 (ENSCJAG00000021357) #12	ENSCJAG00000071446	BTBD3 (ENSCJAG00000058374) #14	SPTLC3 (ENSCJAG00000004560) #16	ISM1 (ENSCJAG00000004583) #17	TASP1 (ENSCJAG00000004599) #18	ENSCJAG00000079755	ESF1 (ENSCJAG00000004640) #19	NDUFAF5 (ENSCJAG00000004655) #20	SEL1L2 (ENSCJAG00000004701) #21	MACROD2 (ENSCJAG00000004719) #22	ENSCJAG00000021859	FLRT3 (ENSCJAG00000057602) #23	ENSCJAG00000084368	ENSCJAG00000004746 #24	ENSCJAG00000004811 #26	OTOR (ENSCJAG00000004842) #27	ENSCJAG00000078493	PCSK2 (ENSCJAG00000004853) #29	ENSCJAG00000073419	BFSP1 (ENSCJAG00000004885) #30	DSTN (ENSCJAG00000059392) #32	RRBP1 (ENSCJAG00000004913) #33	ENSCJAG00000074799	BANF2 (ENSCJAG00000004945) #34	SNX5 (ENSCJAG00000004947) #35
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000006837.f.a.b.a	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.r ##35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Capuchin	MODERN SPECIES	246														NDUFAF5 (ENSCCAG00000020520) #20	SEL1L2 (ENSCCAG00000022672) #21	ENSCCAG00000014786 #22	FLRT3 (ENSCCAG00000031696) #23	ENSCCAG00000029854	ENSCCAG00000031860	ENSCCAG00000026372 #24	ENSCCAG00000024369 #26	OTOR (ENSCCAG00000030623) #27
Bolivian squirrel monkey	MODERN SPECIES	96	JAG1 (ENSSBOG00000025867) #12	ENSSBOG00000019729	ENSSBOG00000005693	BTBD3 (ENSSBOG00000030208) #14	SPTLC3 (ENSSBOG00000028892) #16	ISM1 (ENSSBOG00000029540) #17	ENSSBOG00000032705	ENSSBOG00000021787	TASP1 (ENSSBOG00000034384) #18	ESF1 (ENSSBOG00000030387) #19	NDUFAF5 (ENSSBOG00000027006) #20	ENSSBOG00000020260	SEL1L2 (ENSSBOG00000032712) #21	FLRT3 (ENSSBOG00000015915) #23	ENSSBOG00000020106	MACROD2 (ENSSBOG00000021689) #22	ENSSBOG00000020816 #24	ENSSBOG00000029638 #26	OTOR (ENSSBOG00000025008) #27	ENSSBOG00000016621	PCSK2 (ENSSBOG00000019973) #29	BFSP1 (ENSSBOG00000030964) #30	DSTN (ENSSBOG00000033688) #32	RRBP1 (ENSSBOG00000022194) #33	BANF2 (ENSSBOG00000033147) #34	ENSSBOG00000022392 ##35	MGME1 (ENSSBOG00000026817) #36	OVOL2 (ENSSBOG00000033144) #37	ENSSBOG00000033455	PET117 (ENSSBOG00000018404)	KAT14 (ENSSBOG00000021675)
Tarsier	MODERN SPECIES	2815																ENSTSYG00000012920 #22
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Lemuriformes	ANCESTRAL SPECIES	10	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34
Mouse lemur	MODERN SPECIES	9	PLCB4 (ENSMICG00000006586)	LAMP5 (ENSMICG00000006609)	PAK5 (ENSMICG00000006625)	ANKEF1 (ENSMICG00000010162)	SNAP25 (ENSMICG00000003556)	MKKS (ENSMICG00000043988) #9	SLX4IP (ENSMICG00000005604) #10	JAG1 (ENSMICG00000005608) #12	ENSMICG00000044766 #14	SPTLC3 (ENSMICG00000002259) #16	ISM1 (ENSMICG00000027224) #17	TASP1 (ENSMICG00000013556) #18	ESF1 (ENSMICG00000010711) #19	NDUFAF5 (ENSMICG00000011449) #20	SEL1L2 (ENSMICG00000011457) #21	MACROD2 (ENSMICG00000038471) #22	FLRT3 (ENSMICG00000043599) #23	ENSMICG00000042898	ENSMICG00000045752	WFS1 (ENSMICG00000028651)	PPP2R2C (ENSMICG00000007446)	MAN2B2 (ENSMICG00000007904)	S100P (ENSMICG00000034145)	ENSMICG00000041611	KIAA0232 (ENSMICG00000032016)	ENSMICG00000007951	CCDC96 (ENSMICG00000007976)	TADA2B (ENSMICG00000033119)	ENSMICG00000043820	SORCS2 (ENSMICG00000011732)	AFAP1 (ENSMICG00000005712)
Lemuriformes_a	ANCESTRAL SPECIES	78	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162977 #24	ENSGT00910000147880 #25	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34
Coquerels sifaka	MODERN SPECIES	197							ENSPCOG00000023158	BTBD3 (ENSPCOG00000001592) #14	SPTLC3 (ENSPCOG00000000078) #16	ISM1 (ENSPCOG00000019507) #17	TASP1 (ENSPCOG00000024976) #18	ENSPCOG00000014841	ENSPCOG00000027356 #19	NDUFAF5 (ENSPCOG00000028335) #20	SEL1L2 (ENSPCOG00000027069) #21	MACROD2 (ENSPCOG00000025227) #22	FLRT3 (ENSPCOG00000012319) #23	ENSPCOG00000028189 #24	SNRPB2 (ENSPCOG00000002643) #26	OTOR (ENSPCOG00000013277) #27	PCSK2 (ENSPCOG00000025190) #29	BFSP1 (ENSPCOG00000013457) #30	DSTN (ENSPCOG00000017642) #32	ENSPCOG00000016164 #33	BANF2 (ENSPCOG00000016909) #34	ENSPCOG00000019157 #35	ENSPCOG00000017015	EPPIN (ENSPCOG00000017289)	WFDC9 (ENSPCOG00000024637)	WFDC10A (ENSPCOG00000027690)	WFDC11 (ENSPCOG00000028109)
Greater bamboo lemur	MODERN SPECIES	120	SNAP25 (ENSPSMG00000001369)	MKKS (ENSPSMG00000001298) #9	ENSPSMG00000001275	ENSPSMG00000001262	SLX4IP (ENSPSMG00000001248) #10	JAG1 (ENSPSMG00000001146) #12	BTBD3 (ENSPSMG00000000982) #14	ENSPSMG00000000959	SPTLC3 (ENSPSMG00000000949) #16	ISM1 (ENSPSMG00000000924) #17	TASP1 (ENSPSMG00000000897) #18	ESF1 (ENSPSMG00000000870) #19	NDUFAF5 (ENSPSMG00000000783) #20	SEL1L2 (ENSPSMG00000000735) #21	FLRT3 (ENSPSMG00000000697) #23	MACROD2 (ENSPSMG00000000665) #22	ENSPSMG00000000606	ENSPSMG00000000529 #24	ENSPSMG00000000430 #25	SNRPB2 (ENSPSMG00000000421) #26	OTOR (ENSPSMG00000000390) #27	PCSK2 (ENSPSMG00000000376) #29	BFSP1 (ENSPSMG00000000329) #30	DSTN (ENSPSMG00000000312) #32	ENSPSMG00000000299 #33	BANF2 (ENSPSMG00000000237) #34	ENSPSMG00000000226	ENSPSMG00000000203	ENSPSMG00000000153	ENSPSMG00000000142	ENSPSMG00000000127
Bushbaby	MODERN SPECIES	140	PAK5 (ENSOGAG00000007280)	ENSOGAG00000014052	SNAP25 (ENSOGAG00000005302)	MKKS (ENSOGAG00000005306) #9	ENSOGAG00000031806	SLX4IP (ENSOGAG00000011216) #10	JAG1 (ENSOGAG00000011220) #12	BTBD3 (ENSOGAG00000015125) #14	SPTLC3 (ENSOGAG00000011703) #16	ISM1 (ENSOGAG00000001279) #17	ENSOGAG00000025284	TASP1 (ENSOGAG00000017103) #18	ESF1 (ENSOGAG00000016912) #19	NDUFAF5 (ENSOGAG00000016916) #20	SEL1L2 (ENSOGAG00000016921) #21	ENSOGAG00000028836 #22	FLRT3 (ENSOGAG00000009227) #23
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Tree shrew	MODERN SPECIES	1113																MACROD2 (ENSTBEG00000012767) #22	ENSTBEG00000013022
Glires	ANCESTRAL SPECIES	17	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT01090000260046.l	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Lagomorpha	ANCESTRAL SPECIES	57	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000176378	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00910000148449	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Rabbit	MODERN SPECIES	15	SNAP25 (ENSOCUG00000016119)	MKKS (ENSOCUG00000002872) #9	SLX4IP (ENSOCUG00000002878) #10	JAG1 (ENSOCUG00000002884) #12	ENSOCUG00000017324	BTBD3 (ENSOCUG00000016434) #14	SPTLC3 (ENSOCUG00000001306) #16	ISM1 (ENSOCUG00000001309) #17	ENSOCUG00000033622	TASP1 (ENSOCUG00000001310) #18	ESF1 (ENSOCUG00000005414) #19	NDUFAF5 (ENSOCUG00000005419) #20	ENSOCUG00000026499	SEL1L2 (ENSOCUG00000005423) #21	FLRT3 (ENSOCUG00000001599) #23	MACROD2 (ENSOCUG00000031537) #22	ENSOCUG00000035881	KIF16B (ENSOCUG00000013706)	SNRPB2 (ENSOCUG00000001427) #26	OTOR (ENSOCUG00000001424) #27	ENSOCUG00000032873	PCSK2 (ENSOCUG00000015893) #29	BFSP1 (ENSOCUG00000015787) #30	ENSOCUG00000027456 #32	RRBP1 (ENSOCUG00000021320) #33	BANF2 (ENSOCUG00000022625) #34	ENSOCUG00000029882	ENSOCUG00000017072 #35	MGME1 (ENSOCUG00000017083) #36	OVOL2 (ENSOCUG00000012116) #37	PET117 (ENSOCUG00000037055)
Pika	MODERN SPECIES	4242														ENSOPRG00000001410 #20	ENSOPRG00000001428 #21	MACROD2 (ENSOPRG00000001463) #22
Rodentia	ANCESTRAL SPECIES	18	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.j #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Marmotini	ANCESTRAL SPECIES	5	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.j #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Marmotini_b	ANCESTRAL SPECIES	18	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632.j #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Arctic ground squirrel	MODERN SPECIES	189									SPTLC3 (ENSUPAG00010019749) #16	ISM1 (ENSUPAG00010019769) #17	TASP1 (ENSUPAG00010019776) #18	ESF1 (ENSUPAG00010019813) #19	NDUFAF5 (ENSUPAG00010019823) #20	ENSUPAG00010019856	SEL1L2 (ENSUPAG00010019861) #21	MACROD2 (ENSUPAG00010019890) #22	ENSUPAG00010019944	FLRT3 (ENSUPAG00010019945) #23	KIF16B (ENSUPAG00010019950)	SNRPB2 (ENSUPAG00010019965) #26	OTOR (ENSUPAG00010019972) #27
Squirrel	MODERN SPECIES	85	LAMP5 (ENSSTOG00000000437)	PAK5 (ENSSTOG00000000439)	ANKEF1 (ENSSTOG00000004857)	SNAP25 (ENSSTOG00000014169)	MKKS (ENSSTOG00000014171) #9	SLX4IP (ENSSTOG00000000837) #10	JAG1 (ENSSTOG00000000839) #12	BTBD3 (ENSSTOG00000010603) #14	SPTLC3 (ENSSTOG00000024285) #16	ISM1 (ENSSTOG00000000673) #17	TASP1 (ENSSTOG00000012836) #18	ESF1 (ENSSTOG00000009846) #19	NDUFAF5 (ENSSTOG00000009865) #20	SEL1L2 (ENSSTOG00000009880) #21	FLRT3 (ENSSTOG00000009011) #23	MACROD2 (ENSSTOG00000034890) #22	KIF16B (ENSSTOG00000027860)	ENSSTOG00000009198 #26	OTOR (ENSSTOG00000009220) #27	PCSK2 (ENSSTOG00000009909) #29	BFSP1 (ENSSTOG00000022845) #30	ENSSTOG00000025925 #32	RRBP1 (ENSSTOG00000025839) #33	BANF2 (ENSSTOG00000015409) #34	SNX5 (ENSSTOG00000015416) #35	MGME1 (ENSSTOG00000019941) #36	OVOL2 (ENSSTOG00000024979) #37	PET117 (ENSSTOG00000026528)	KAT14 (ENSSTOG00000010238)	ZNF133 (ENSSTOG00000013576)	DZANK1 (ENSSTOG00000013579)
Alpin marmot	MODERN SPECIES		ENSMMMG00000001303	ANKEF1 (ENSMMMG00000001311)	SNAP25 (ENSMMMG00000001376)	MKKS (ENSMMMG00000001417) #9	SLX4IP (ENSMMMG00000001437) #10	JAG1 (ENSMMMG00000001462) #12	BTBD3 (ENSMMMG00000001534) #14	SPTLC3 (ENSMMMG00000001568) #16	ISM1 (ENSMMMG00000001620) #17	TASP1 (ENSMMMG00000001671) #18	ENSMMMG00000001764	ESF1 (ENSMMMG00000001777) #19	NDUFAF5 (ENSMMMG00000001808) #20	SEL1L2 (ENSMMMG00000001842) #21	ENSMMMG00000001891	MACROD2 (ENSMMMG00000001917) #22	FLRT3 (ENSMMMG00000002096) #23	ENSMMMG00000002150 #24	SNRPB2 (ENSMMMG00000002460) #26	OTOR (ENSMMMG00000002467) #27	PCSK2 (ENSMMMG00000002494) #29	BFSP1 (ENSMMMG00000002526) #30	DSTN (ENSMMMG00000002604) #32	RRBP1 (ENSMMMG00000002621) #33	BANF2 (ENSMMMG00000002735) #34	SNX5 (ENSMMMG00000002770) #35	MGME1 (ENSMMMG00000002827) #36	OVOL2 (ENSMMMG00000002853) #37	KAT14 (ENSMMMG00000002887)	ZNF133 (ENSMMMG00000002935)	DZANK1 (ENSMMMG00000002954)
Eurasian red squirrel	MODERN SPECIES	11	MKKS (ENSSVLG00005002330) #9	SLX4IP (ENSSVLG00005002310) #10	JAG1 (ENSSVLG00005002290) #12	BTBD3 (ENSSVLG00005002268) #14	ENSSVLG00005002253	SPTLC3 (ENSSVLG00005002232) #16	ISM1 (ENSSVLG00005002209) #17	ENSSVLG00005002168	ENSSVLG00005002153	TASP1 (ENSSVLG00005002136) #18	ESF1 (ENSSVLG00005002086) #19	NDUFAF5 (ENSSVLG00005002046) #20	SEL1L2 (ENSSVLG00005001940) #21	FLRT3 (ENSSVLG00005001878) #23	ENSSVLG00005001872	MACROD2 (ENSSVLG00005001799) #22	KIF16B (ENSSVLG00005001713)	SNRPB2 (ENSSVLG00005001653) #26	OTOR (ENSSVLG00005001637) #27	ENSSVLG00005001619	PCSK2 (ENSSVLG00005001551) #29	BFSP1 (ENSSVLG00005001502) #30	DSTN (ENSSVLG00005001480) #32	ENSSVLG00005001461 #33	ENSSVLG00005001380 #33	BANF2 (ENSSVLG00005001305) #34	SNX5 (ENSSVLG00005001277) #35	MGME1 (ENSSVLG00005001257) #36	ENSSVLG00005001249	OVOL2 (ENSSVLG00005001229) #37	KAT14 (ENSSVLG00005001213)
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000032981	PAK5 (ENSHGLG00000016050)	ENSHGLG00000046856	ANKEF1 (ENSHGLG00000017245)	ENSHGLG00000016926	ENSHGLG00000033517 #16	ISM1 (ENSHGLG00000043849) #17	TASP1 (ENSHGLG00000016276) #18	ESF1 (ENSHGLG00000011505) #19	NDUFAF5 (ENSHGLG00000012482) #20	ENSHGLG00000021400	ENSHGLG00000017747 #21	ENSHGLG00000037190	FLRT3 (ENSHGLG00000016173) #23	ENSHGLG00000032467	ENSHGLG00000017926 #22	ENSHGLG00000016849 #24	SNRPB2 (ENSHGLG00000006969) #26	OTOR (ENSHGLG00000008576) #27	ENSHGLG00000005046	ENSHGLG00000020281	ENSHGLG00000018289 #33	BANF2 (ENSHGLG00000015254) #34	SNX5 (ENSHGLG00000017606) #35	OVOL2 (ENSHGLG00000045118) #37	PET117 (ENSHGLG00000016254)	ENSHGLG00000033006	ENSHGLG00000042998	ENSHGLG00000015592	ENSHGLG00000035052	POLR3F (ENSHGLG00000011867)
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Guinea pig	MODERN SPECIES	8	PLCB4 (ENSCPOG00000000458)	LAMP5 (ENSCPOG00000007382)	ENSCPOG00000031865	ANKEF1 (ENSCPOG00000001182)	SNAP25 (ENSCPOG00000002878)	MKKS (ENSCPOG00000040536) #9	ENSCPOG00000038629	JAG1 (ENSCPOG00000022187) #12	BTBD3 (ENSCPOG00000005060) #14	ISM1 (ENSCPOG00000013442) #17	TASP1 (ENSCPOG00000001807) #18	ENSCPOG00000014027 #19	NDUFAF5 (ENSCPOG00000014030) #20	SEL1L2 (ENSCPOG00000014032) #21	FLRT3 (ENSCPOG00000040593) #23	MACROD2 (ENSCPOG00000032459) #22	ENSCPOG00000038608 #24	SNRPB2 (ENSCPOG00000037539) #26	OTOR (ENSCPOG00000034417) #27	PCSK2 (ENSCPOG00000006100) #29	BFSP1 (ENSCPOG00000025787) #30	DSTN (ENSCPOG00000005573) #32	RRBP1 (ENSCPOG00000022191) #33	BANF2 (ENSCPOG00000000915) #34	SNX5 (ENSCPOG00000007908) #35	MGME1 (ENSCPOG00000036436) #36	OVOL2 (ENSCPOG00000039633) #37	PET117 (ENSCPOG00000031383)	KAT14 (ENSCPOG00000013124)	ZNF133 (ENSCPOG00000030599)	DZANK1 (ENSCPOG00000002397)
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881.`b #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Long-tailed chinchilla	MODERN SPECIES	122	SNAP25 (ENSCLAG00000013458)	MKKS (ENSCLAG00000011755) #9	SLX4IP (ENSCLAG00000013662) #10	JAG1 (ENSCLAG00000015718) #12	BTBD3 (ENSCLAG00000016652) #14	ENSCLAG00000015652	SPTLC3 (ENSCLAG00000010757) #16	ENSCLAG00000010570	ISM1 (ENSCLAG00000010948) #17	TASP1 (ENSCLAG00000014601) #18	ENSCLAG00000012594	ENSCLAG00000013154	ENSCLAG00000013266 #19	NDUFAF5 (ENSCLAG00000015585) #20	SEL1L2 (ENSCLAG00000014367) #21	MACROD2 (ENSCLAG00000014137) #22	FLRT3 (ENSCLAG00000014984) #23	ENSCLAG00000010315	ENSCLAG00000012327 #24	ENSCLAG00000014771 #26	OTOR (ENSCLAG00000016622) #27	PCSK2 (ENSCLAG00000012372) #29	BFSP1 (ENSCLAG00000013897) #30	DSTN (ENSCLAG00000016304) #32	RRBP1 (ENSCLAG00000017033) #33	BANF2 (ENSCLAG00000010547) #34	SNX5 (ENSCLAG00000010784) #35	MGME1 (ENSCLAG00000011196) #36	OVOL2 (ENSCLAG00000015694) #37	PET117 (ENSCLAG00000015171)	KAT14 (ENSCLAG00000012590)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	101	LAMP5 (ENSODEG00000005600)	ENSODEG00000006070	ANKEF1 (ENSODEG00000006272)	SNAP25 (ENSODEG00000007280)	MKKS (ENSODEG00000005483) #9	SLX4IP (ENSODEG00000006940) #10	JAG1 (ENSODEG00000006124) #12	BTBD3 (ENSODEG00000006961) #14	ISM1 (ENSODEG00000006636) #17	TASP1 (ENSODEG00000006519) #18	ENSODEG00000009698	ENSODEG00000006747	ENSODEG00000006824 #19	NDUFAF5 (ENSODEG00000006100) #20	SEL1L2 (ENSODEG00000006034) #21	ENSODEG00000006962 #22
Degu	MODERN SPECIES	427																ENSODEG00000000032 #22	ENSODEG00000000039	ENSODEG00000000043	CALHM4 (ENSODEG00000000047)	ENSODEG00000000058
Degu	MODERN SPECIES	114														FLRT3 (ENSODEG00000013189) #23	ENSODEG00000013397	ENSODEG00000013550 #22	ENSODEG00000012748	ENSODEG00000012852 #24	ENSODEG00000012935	SNRPB2 (ENSODEG00000012192) #26	OTOR (ENSODEG00000011855) #27	PCSK2 (ENSODEG00000012133) #29	BFSP1 (ENSODEG00000012461) #30	ENSODEG00000011807 #32	ENSODEG00000013199 #33	BANF2 (ENSODEG00000011931) #34	ENSODEG00000012412 #35	MGME1 (ENSODEG00000011889) #36	OVOL2 (ENSODEG00000011424) #37	PET117 (ENSODEG00000011978)	ENSODEG00000012384
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Muroidea	ANCESTRAL SPECIES	7	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Golden Hamster	MODERN SPECIES	631	Lamp5 (ENSMAUG00000015597)	Pak5 (ENSMAUG00000011943)	Ankef1 (ENSMAUG00000014584)	Snap25 (ENSMAUG00000021765)	Mkks (ENSMAUG00000017675) #9	Slx4ip (ENSMAUG00000019729) #10	Jag1 (ENSMAUG00000015416) #12	Btbd3 (ENSMAUG00000014183) #14	Sptlc3 (ENSMAUG00000017630) #16	Ism1 (ENSMAUG00000019102) #17	Tasp1 (ENSMAUG00000016013) #18	ENSMAUG00000017761	Esf1 (ENSMAUG00000015975) #19	Ndufaf5 (ENSMAUG00000017597) #20	Sel1l2 (ENSMAUG00000016746) #21	ENSMAUG00000020675 #22	ENSMAUG00000010487	Flrt3 (ENSMAUG00000009243) #23	Kif16b (ENSMAUG00000017233) #24	Snrpb2 (ENSMAUG00000006149) #26	Otor (ENSMAUG00000006818) #27	Bfsp1 (ENSMAUG00000012205) #30	Dstn (ENSMAUG00000004696) #32	ENSMAUG00000020068 #33	Snx5 (ENSMAUG00000017363) #35	Mgme1 (ENSMAUG00000021458) #36	ENSMAUG00000021046 #37	Pet117 (ENSMAUG00000020835)	Kat14 (ENSMAUG00000003665)
Chinese hamster chok1gshd	MODERN SPECIES	188	Ankef1 (ENSCGRG00001003807)	Snap25 (ENSCGRG00001010587)	Mkks (ENSCGRG00001024712) #9	Slx4ip (ENSCGRG00001023208) #10	Jag1 (ENSCGRG00001022817) #12	ENSCGRG00001024608	Btbd3 (ENSCGRG00001023905) #14	Sptlc3 (ENSCGRG00001008377) #16	Ism1 (ENSCGRG00001003888) #17	ENSCGRG00001011613	Tasp1 (ENSCGRG00001019111) #18	Esf1 (ENSCGRG00001018257) #19	Ndufaf5 (ENSCGRG00001000888) #20	Sel1l2 (ENSCGRG00001011411) #21	Flrt3 (ENSCGRG00001008336) #23	Macrod2 (ENSCGRG00001022787) #22	Kif16b (ENSCGRG00001022622) #24	ENSCGRG00001023452 #26	Otor (ENSCGRG00001021898) #27	Pcsk2 (ENSCGRG00001021369) #29	Bfsp1 (ENSCGRG00001024426) #30	Dstn (ENSCGRG00001019206) #32	Rrbp1 (ENSCGRG00001023883) #33	Banf2 (ENSCGRG00001014050) #34	Snx5 (ENSCGRG00001013269) #35	MGME1 (ENSCGRG00001019490) #36	Ovol2 (ENSCGRG00001018332) #37	Pet117 (ENSCGRG00001015197)	Kat14 (ENSCGRG00001013086)	ENSCGRG00001012031	Dzank1 (ENSCGRG00001019385)
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Prairie vole	MODERN SPECIES	86	Lamp5 (ENSMOCG00000006303)	Pak5 (ENSMOCG00000015982)	Ankef1 (ENSMOCG00000020361)	Snap25 (ENSMOCG00000006400)	Mkks (ENSMOCG00000019189) #9	Slx4ip (ENSMOCG00000001268) #10	Jag1 (ENSMOCG00000012401) #12	Btbd3 (ENSMOCG00000016317) #14	Sptlc3 (ENSMOCG00000017747) #16	Ism1 (ENSMOCG00000003648) #17	Tasp1 (ENSMOCG00000008978) #18	Esf1 (ENSMOCG00000005902) #19	Ndufaf5 (ENSMOCG00000000938) #20	Sel1l2 (ENSMOCG00000007945) #21	Flrt3 (ENSMOCG00000016883) #23	Macrod2 (ENSMOCG00000014131) #22	ENSMOCG00000006419	ENSMOCG00000020745 #26	Otor (ENSMOCG00000009112) #27	Pcsk2 (ENSMOCG00000015397) #29	Bfsp1 (ENSMOCG00000002930) #30	Dstn (ENSMOCG00000000892) #32	Rrbp1 (ENSMOCG00000010378) #33	Banf2 (ENSMOCG00000010847) #34	ENSMOCG00000007106	Snx5 (ENSMOCG00000009454) #35	Mgme1 (ENSMOCG00000022927) #36	Ovol2 (ENSMOCG00000019872) #37	Pet117 (ENSMOCG00000015322)	Kat14 (ENSMOCG00000013699)	ENSMOCG00000009849
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000025265	Mkks (ENSPEMG00000016750) #9	Gm56450 (ENSPEMG00000030306)	Gm56451 (ENSPEMG00000029778)	Slx4ip (ENSPEMG00000018306) #10	Jag1 (ENSPEMG00000019156) #12	Btbd3 (ENSPEMG00000000827) #14	Sptlc3 (ENSPEMG00000003941) #16	ENSPEMG00000013890	Ism1 (ENSPEMG00000014467) #17	Tasp1 (ENSPEMG00000017178) #18	Esf1 (ENSPEMG00000018256) #19	Ndufaf5 (ENSPEMG00000018620) #20	ENSPEMG00000026976	Sel1l2 (ENSPEMG00000019169) #21	Macrod2 (ENSPEMG00000003674) #22	ENSPEMG00000030076	Flrt3 (ENSPEMG00000027078) #23	Kif16b (ENSPEMG00000008996) #24	Snrpb2 (ENSPEMG00000010833) #26	Otor (ENSPEMG00000012638) #27	ENSPEMG00000014667 #28	Pcsk2 (ENSPEMG00000016484) #29	Bfsp1 (ENSPEMG00000018655) #30	Dstn (ENSPEMG00000000186) #32	Rrbp1 (ENSPEMG00000012715) #33	Banf2 (ENSPEMG00000015717) #34	ENSPEMG00000020213	Snx5 (ENSPEMG00000020273) #35	ENSPEMG00000004962 #36	Ovol2 (ENSPEMG00000010282) #37
Murinae	DUPLICATION
Murinae	ANCESTRAL SPECIES	1	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.bb #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT01050000248433	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Mus	ANCESTRAL SPECIES	1	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.bb #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Mus_A	ANCESTRAL SPECIES		ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.bb #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT01050000248433	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Ryukyu mouse	MODERN SPECIES	11	Plcb4 (MGP_CAROLIEiJ_G0024353)	Lamp5 (MGP_CAROLIEiJ_G0024354)	Pak5 (MGP_CAROLIEiJ_G0024355)	Ankef1 (MGP_CAROLIEiJ_G0024356)	Snap25 (MGP_CAROLIEiJ_G0024357)	Mkks (MGP_CAROLIEiJ_G0024358) #9	MGP_CAROLIEiJ_G0024359 #10	Jag1 (MGP_CAROLIEiJ_G0024360) #12	Btbd3 (MGP_CAROLIEiJ_G0024361) #14	Sptlc3 (MGP_CAROLIEiJ_G0024362) #16	Ism1 (MGP_CAROLIEiJ_G0024363) #17	Tasp1 (MGP_CAROLIEiJ_G0024364) #18	Esf1 (MGP_CAROLIEiJ_G0024365) #19	Ndufaf5 (MGP_CAROLIEiJ_G0024366) #20	Sel1l2 (MGP_CAROLIEiJ_G0024367) #21	Macrod2 (MGP_CAROLIEiJ_G0024368) #22	Flrt3 (MGP_CAROLIEiJ_G0024369) #23	MGP_CAROLIEiJ_G0024370	Kif16b (MGP_CAROLIEiJ_G0024371) #24	Snrpb2 (MGP_CAROLIEiJ_G0024372) #26	Otor (MGP_CAROLIEiJ_G0024373) #27	Pcsk2 (MGP_CAROLIEiJ_G0024374) #29	Bfsp1 (MGP_CAROLIEiJ_G0024375) #30	Dstn (MGP_CAROLIEiJ_G0024376) #32	Rrbp1 (MGP_CAROLIEiJ_G0024377) #33	Banf2 (MGP_CAROLIEiJ_G0024378) #34	Snx5 (MGP_CAROLIEiJ_G0024379) #35	Mgme1 (MGP_CAROLIEiJ_G0024380) #36	Ovol2 (MGP_CAROLIEiJ_G0024381) #37	Kat14 (MGP_CAROLIEiJ_G0024382)	Pet117 (MGP_CAROLIEiJ_G0024383)
Mus_B	ANCESTRAL SPECIES	1	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.bb #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT01050000248433	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926
Mus_C	ANCESTRAL SPECIES		ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.bb #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00390000000549
spretus	MODERN SPECIES	11	Plcb4 (MGP_SPRETEiJ_G0025273)	Lamp5 (MGP_SPRETEiJ_G0025274)	Pak5 (MGP_SPRETEiJ_G0025275)	Ankef1 (MGP_SPRETEiJ_G0025276)	Snap25 (MGP_SPRETEiJ_G0025277)	Mkks (MGP_SPRETEiJ_G0025278) #9	Slx4ip (MGP_SPRETEiJ_G0025279) #10	Jag1 (MGP_SPRETEiJ_G0025280) #12	Btbd3 (MGP_SPRETEiJ_G0025281) #14	MGP_SPRETEiJ_G0025282 #16	Ism1 (MGP_SPRETEiJ_G0025283) #17	Tasp1 (MGP_SPRETEiJ_G0025284) #18	Esf1 (MGP_SPRETEiJ_G0025285) #19	Ndufaf5 (MGP_SPRETEiJ_G0025286) #20	Sel1l2 (MGP_SPRETEiJ_G0025287) #21	Macrod2 (MGP_SPRETEiJ_G0025288) #22	Flrt3 (MGP_SPRETEiJ_G0025289) #23	MGP_SPRETEiJ_G0025290	Snrpb2 (MGP_SPRETEiJ_G0025291) #26	Otor (MGP_SPRETEiJ_G0025292) #27	Pcsk2 (MGP_SPRETEiJ_G0025293) #29	Bfsp1 (MGP_SPRETEiJ_G0025294) #30	Dstn (MGP_SPRETEiJ_G0025295) #32	Rrbp1 (MGP_SPRETEiJ_G0025296) #33	Banf2 (MGP_SPRETEiJ_G0025297) #34	Snx5 (MGP_SPRETEiJ_G0025298) #35	Mgme1 (MGP_SPRETEiJ_G0025299) #36	Ovol2 (MGP_SPRETEiJ_G0025300) #37	Kat14 (MGP_SPRETEiJ_G0025301)	Pet117 (MGP_SPRETEiJ_G0025302)	Dzank1 (MGP_SPRETEiJ_G0025303)
Steppe mouse	MODERN SPECIES	20								Sptlc3 (ENSMSIG00000025816) #16	Ism1 (ENSMSIG00000025794) #17	Tasp1 (ENSMSIG00000025616) #18	ENSMSIG00000025612	Esf1 (ENSMSIG00000025596) #19	Ndufaf5 (ENSMSIG00000025566) #20	Sel1l2 (ENSMSIG00000025500) #21	ENSMSIG00000025472	Macrod2 (ENSMSIG00000025341) #22	ENSMSIG00000025120 #24	ENSMSIG00000025113	Snrpb2 (ENSMSIG00000025101) #26	Otor (ENSMSIG00000025089) #27	Pcsk2 (ENSMSIG00000025063) #29	Bfsp1 (ENSMSIG00000025035) #30	ENSMSIG00000025021 #32	Rrbp1 (ENSMSIG00000021488) #33	Banf2 (ENSMSIG00000021443) #34	ENSMSIG00000021433	Snx5 (ENSMSIG00000021383) #35	Mgme1 (ENSMSIG00000021371) #36	Ovol2 (ENSMSIG00000021351) #37	ENSMSIG00000021339	Pet117 (ENSMSIG00000021320)
Mouse	MODERN SPECIES	11	Pak5 (ENSMUSG00000039913)	Ankef1 (ENSMUSG00000074771)	Snap25 (ENSMUSG00000027273)	Mkks (ENSMUSG00000027274) #9	Gm56450 (ENSMUSG00000115423)	Gm56451 (ENSMUSG00000116563)	Slx4ip (ENSMUSG00000027281) #10	Jag1 (ENSMUSG00000027276) #12	Btbd3 (ENSMUSG00000062098) #14	Sptlc3 (ENSMUSG00000039092) #16	Ism1 (ENSMUSG00000074766) #17	Tasp1 (ENSMUSG00000039033) #18	Esf1 (ENSMUSG00000045624) #19	Ndufaf5 (ENSMUSG00000027384) #20	Sel1l2 (ENSMUSG00000074764) #21	Macrod2 (ENSMUSG00000068205) #22	Flrt3 (ENSMUSG00000051379) #23	Kif16b (ENSMUSG00000038844) #24	Snrpb2 (ENSMUSG00000008333) #26	Otor (ENSMUSG00000027416) #27	Pcsk2 (ENSMUSG00000027419) #29	Bfsp1 (ENSMUSG00000027420) #30	Dstn (ENSMUSG00000015932) #32	Rrbp1 (ENSMUSG00000027422) #33	Banf2 (ENSMUSG00000037307) #34	Snx5 (ENSMUSG00000027423) #35	Mgme1 (ENSMUSG00000027424) #36	Ovol2 (ENSMUSG00000037279) #37	Kat14 (ENSMUSG00000027425)	Pet117 (ENSMUSG00000098387)	Dzank1 (ENSMUSG00000037259)
Shrew mouse	MODERN SPECIES	16	Lamp5 (MGP_PahariEiJ_G0025799)	Pak5 (MGP_PahariEiJ_G0025800)	Ankef1 (MGP_PahariEiJ_G0025801)	Snap25 (MGP_PahariEiJ_G0025802)	Mkks (MGP_PahariEiJ_G0025803) #9	Slx4ip (MGP_PahariEiJ_G0025804) #10	Jag1 (MGP_PahariEiJ_G0025805) #12	Btbd3 (MGP_PahariEiJ_G0025806) #14	Sptlc3 (MGP_PahariEiJ_G0025807) #16	Ism1 (MGP_PahariEiJ_G0025808) #17	Tasp1 (MGP_PahariEiJ_G0025809) #18	Esf1 (MGP_PahariEiJ_G0025810) #19	MGP_PahariEiJ_G0025811	Ndufaf5 (MGP_PahariEiJ_G0025812) #20	Sel1l2 (MGP_PahariEiJ_G0025813) #21	Macrod2 (MGP_PahariEiJ_G0025814) #22	Flrt3 (MGP_PahariEiJ_G0025815) #23	MGP_PahariEiJ_G0025816	Snrpb2 (MGP_PahariEiJ_G0025817) #26	Otor (MGP_PahariEiJ_G0025818) #27	Pcsk2 (MGP_PahariEiJ_G0025819) #29	Bfsp1 (MGP_PahariEiJ_G0025820) #30	Rrbp1 (MGP_PahariEiJ_G0025821) #33	Banf2 (MGP_PahariEiJ_G0025822) #34	Snx5 (MGP_PahariEiJ_G0025823) #35	Mgme1 (MGP_PahariEiJ_G0025824) #36	Ovol2 (MGP_PahariEiJ_G0025825) #37	Kat14 (MGP_PahariEiJ_G0025826)	Pet117 (MGP_PahariEiJ_G0025827)	Dzank1 (MGP_PahariEiJ_G0025828)	Polr3f (MGP_PahariEiJ_G0025829)
Rat	MODERN SPECIES	13	Mkks (ENSRNOG00000006705) #9	Gm56451 (ENSRNOG00000067094)	Slx4ip (ENSRNOG00000007430) #10	Jag1 (ENSRNOG00000007443) #12	Btbd3 (ENSRNOG00000008088) #14	ENSRNOG00000067830	ENSRNOG00000066288	AABR07053884.1 (ENSRNOG00000030601)	Sptlc3 (ENSRNOG00000004443) #16	Ism1 (ENSRNOG00000063262) #17	ENSRNOG00000068011	Tasp1 (ENSRNOG00000004493) #18	Esf1 (ENSRNOG00000004777) #19	Ndufaf5 (ENSRNOG00000004784) #20	Sel1l2 (ENSRNOG00000004852) #21	Macrod2 (ENSRNOG00000050784) #22	Flrt3 (ENSRNOG00000004874) #23	ENSRNOG00000062960	Kif16b (ENSRNOG00000004951) #24	Snrpb2 (ENSRNOG00000004967) #26	Otor (ENSRNOG00000028721) #27	Pcsk2 (ENSRNOG00000005438) #29	Bfsp1 (ENSRNOG00000005707) #30	Dstn (ENSRNOG00000005924) #32	Rrbp1 (ENSRNOG00000005958) #33	Banf2 (ENSRNOG00000006032) #34	Snx5 (ENSRNOG00000006077) #35	Mgme1 (ENSRNOG00000028196) #36	Ovol2 (ENSRNOG00000006850) #37	Kat14 (ENSRNOG00000007160)	Zfp133 (ENSRNOG00000027955)
Murinae	ANCESTRAL SPECIES																	ENSGT00940000157404.cb #22
Mus	ANCESTRAL SPECIES																	ENSGT00940000157404.cb #22
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000157404.cb #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000157404.cb #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000157404.cb #22
Steppe mouse	MODERN SPECIES	3011				Il7r (ENSMSIG00000030891)	Capsl (ENSMSIG00000030897)	ENSMSIG00000030898	Ugt3a2 (ENSMSIG00000030899)	ENSMSIG00000030908	ENSMSIG00000030913	ENSMSIG00000030917	Lmbrd2 (ENSMSIG00000030920)	Skp2 (ENSMSIG00000030934)	Nadk2 (ENSMSIG00000030950)	Ranbp3l (ENSMSIG00000030958)	Slc1a3 (ENSMSIG00000030979)	ENSMSIG00000030989 #22	Nipbl (ENSMSIG00000030991)	Cplane1 (ENSMSIG00000031010)	Nup155 (ENSMSIG00000031024)
Rat	MODERN SPECIES	17	Odf3l2 (ENSRNOG00000008199)	Madcam1 (ENSRNOG00000008217)	Tpgs1 (ENSRNOG00000008296)	Cdc34 (ENSRNOG00000060530)	Gzmm (ENSRNOG00000030530)	Bsg (ENSRNOG00000008414)	Hcn2 (ENSRNOG00000008831)	Polrmt (ENSRNOG00000024879)	Fgf22 (ENSRNOG00000008960)	Rnf126 (ENSRNOG00000009028)	Fstl3 (ENSRNOG00000009311)	Prss57 (ENSRNOG00000025293)	Palm (ENSRNOG00000009760)	Misp (ENSRNOG00000010423)	Ptbp1 (ENSRNOG00000010448)	ENSRNOG00000069136 #22	Plppr3 (ENSRNOG00000027940)	Prtn3 (ENSRNOG00000029814)	Elane (ENSRNOG00000033685)	Cfd (ENSRNOG00000033564)	Med16 (ENSRNOG00000011315)	R3hdm4 (ENSRNOG00000011489)	Kiss1r (ENSRNOG00000011954)	Arid3a (ENSRNOG00000026435)	Wdr18 (ENSRNOG00000012379)	Grin3b (ENSRNOG00000012562)	Tmem259 (ENSRNOG00000012808)	Cnn2 (ENSRNOG00000043044)	Abca7 (ENSRNOG00000012939)	Arhgap45 (ENSRNOG00000013220)	Polr2e (ENSRNOG00000013545)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1008															Flrt3 (ENSNGAG00000001087) #23	ENSNGAG00000017762 #22	Kif16b (ENSNGAG00000013803) #24	ENSNGAG00000012458
Upper Galilee mountains blind mole rat	MODERN SPECIES	1757																ENSNGAG00000012629 #22
Kangaroo rat	MODERN SPECIES	332	Ankef1 (ENSDORG00000010467)	Snap25 (ENSDORG00000000926)	Mkks (ENSDORG00000003525) #9	Jag1 (ENSDORG00000005289) #12	ENSDORG00000028911	ENSDORG00000027494	Btbd3 (ENSDORG00000005643) #14	Sptlc3 (ENSDORG00000010161) #16	Ism1 (ENSDORG00000030172) #17	Tasp1 (ENSDORG00000011134) #18	Esf1 (ENSDORG00000016313) #19	Ndufaf5 (ENSDORG00000016314) #20	Sel1l2 (ENSDORG00000016316) #21	Flrt3 (ENSDORG00000009346) #23	ENSDORG00000024068	Macrod2 (ENSDORG00000016317) #22	Kif16b (ENSDORG00000005792) #24	Snrpb2 (ENSDORG00000027524) #26	Otor (ENSDORG00000003951) #27
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT01090000260046	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Suina	ANCESTRAL SPECIES	9	ENSGT00950000182899.A	ENSGT00910000147842	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Pig	MODERN SPECIES	8	PAK5 (ENSSSCG00000007061)	ANKEF1 (ENSSSCG00000007063)	SNAP25 (ENSSSCG00000026985)	MKKS (ENSSSCG00000007064) #9	ENSSSCG00000007065	JAG1 (ENSSSCG00000007067) #12	BTBD3 (ENSSSCG00000020853) #14	ENSSSCG00000060712	SPTLC3 (ENSSSCG00000007072) #16	ISM1 (ENSSSCG00000007073) #17	TASP1 (ENSSSCG00000007074) #18	ENSSSCG00000058041	ESF1 (ENSSSCG00000007077) #19	NDUFAF5 (ENSSSCG00000007076) #20	SEL1L2 (ENSSSCG00000007078) #21	MACROD2 (ENSSSCG00000030112) #22	FLRT3 (ENSSSCG00000007079) #23	ENSSSCG00000037798	KIF16B (ENSSSCG00000007080)	ENSSSCG00000037602 #26	ENSSSCG00000007082 #27	PCSK2 (ENSSSCG00000007083) #29	BFSP1 (ENSSSCG00000007084) #30	DSTN (ENSSSCG00000007085) #32	RRBP1 (ENSSSCG00000024692) #33	BANF2 (ENSSSCG00000056481) #34	ENSSSCG00000007088 #35	MGME1 (ENSSSCG00000007089) #36	OVOL2 (ENSSSCG00000036377) #37	PET117 (ENSSSCG00000052391)	KAT14 (ENSSSCG00000007092)
Chacoan peccary	MODERN SPECIES	801	ENSCWAG00000014115	ANKEF1 (ENSCWAG00000014040)	SNAP25 (ENSCWAG00000013905)	MKKS (ENSCWAG00000013826) #9	JAG1 (ENSCWAG00000013705) #12	BTBD3 (ENSCWAG00000013652) #14	SPTLC3 (ENSCWAG00000013511) #16	ISM1 (ENSCWAG00000013436) #17	TASP1 (ENSCWAG00000013358) #18	ESF1 (ENSCWAG00000013203) #19	NDUFAF5 (ENSCWAG00000013087) #20	SEL1L2 (ENSCWAG00000012633) #21	FLRT3 (ENSCWAG00000012603) #23	ENSCWAG00000012565	ENSCWAG00000012524	MACROD2 (ENSCWAG00000011829) #22	ENSCWAG00000011760	KIF16B (ENSCWAG00000011606)	SNRPB2 (ENSCWAG00000011538) #26	OTOR (ENSCWAG00000011500) #27	PCSK2 (ENSCWAG00000011296) #29	BFSP1 (ENSCWAG00000011197) #30	ENSCWAG00000011133	ENSCWAG00000011013	DSTN (ENSCWAG00000010983) #32	ENSCWAG00000010705 #33	BANF2 (ENSCWAG00000010649) #34	SNX5 (ENSCWAG00000010602) #35	MGME1 (ENSCWAG00000010562) #36	OVOL2 (ENSCWAG00000010521) #37	KAT14 (ENSCWAG00000010453)
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Camelidae	ANCESTRAL SPECIES	49	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00390000001146	ENSGT00940000162260	ENSGT00390000000549
Alpaca	MODERN SPECIES	3238											ENSVPAG00000005289	TASP1 (ENSVPAG00000005290) #18	ESF1 (ENSVPAG00000005291) #19	NDUFAF5 (ENSVPAG00000005292) #20	SEL1L2 (ENSVPAG00000005293) #21	MACROD2 (ENSVPAG00000005295) #22	FLRT3 (ENSVPAG00000005297) #23
Arabian camel	MODERN SPECIES	10	SNAP25 (ENSCDRG00005006617)	MKKS (ENSCDRG00005006576) #9	JAG1 (ENSCDRG00005006331) #12	BTBD3 (ENSCDRG00005006294) #14	ENSCDRG00005006246 #16	ENSCDRG00005006217 #16	ENSCDRG00005006184	ENSCDRG00005006146	ENSCDRG00005006129	ISM1 (ENSCDRG00005006068) #17	TASP1 (ENSCDRG00005006017) #18	ESF1 (ENSCDRG00005005963) #19	NDUFAF5 (ENSCDRG00005005903) #20	SEL1L2 (ENSCDRG00005005645) #21	FLRT3 (ENSCDRG00005005604) #23	MACROD2 (ENSCDRG00005005315) #22	KIF16B (ENSCDRG00005004945)	SNRPB2 (ENSCDRG00005004901) #26	OTOR (ENSCDRG00005004884) #27	ENSCDRG00005004879	PCSK2 (ENSCDRG00005004757) #29	BFSP1 (ENSCDRG00005004724) #30	DSTN (ENSCDRG00005004674) #32	RRBP1 (ENSCDRG00005004353) #33	BANF2 (ENSCDRG00005004286) #34	SNX5 (ENSCDRG00005004244) #35	MGME1 (ENSCDRG00005004194) #36	OVOL2 (ENSCDRG00005004167) #37	KAT14 (ENSCDRG00005004093)	ZNF133 (ENSCDRG00005003997)	DZANK1 (ENSCDRG00005003737)
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B
Pecora	ANCESTRAL SPECIES	9	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00940000153661.a.a.c.a	ENSGT00390000011669	ENSGT00390000000121	ENSGT00390000018872	ENSGT00790000123099.`c.a	ENSGT00790000123099.`c.b	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123
Yarkand deer	MODERN SPECIES	15	ENSCHYG00000026398 #9	ENSCHYG00000026407	ENSCHYG00000026412	ENSCHYG00000026432 #10	JAG1 (ENSCHYG00000013721) #12	ENSCHYG00000014252	BTBD3 (ENSCHYG00000014298) #14	ENSCHYG00000014419	SPTLC3 (ENSCHYG00000014454) #16	ENSCHYG00000014761	ISM1 (ENSCHYG00000014788) #17	TASP1 (ENSCHYG00000014901) #18	ESF1 (ENSCHYG00000015179) #19	NDUFAF5 (ENSCHYG00000015321) #20	SEL1L2 (ENSCHYG00000015635) #21	MACROD2 (ENSCHYG00000015960) #22	FLRT3 (ENSCHYG00000016270) #23	ENSCHYG00000016295	KIF16B (ENSCHYG00000016386)	SNRPB2 (ENSCHYG00000017566) #26	OTOR (ENSCHYG00000017639) #27	NANP (ENSCHYG00000017705)	ENSCHYG00000017744	ENSCHYG00000017814	ENSCHYG00000018002	FBH1 (ENSCHYG00000018071)	ENSCHYG00000018588	IL2RA (ENSCHYG00000018868)	ENSCHYG00000018940	ENSCHYG00000019003	PFKFB3 (ENSCHYG00000019152)
Percora_a	ANCESTRAL SPECIES	10	ENSGT00910000147842	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000011669	ENSGT00390000000121	ENSGT00390000018872	ENSGT00790000123099.`c.a	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	154																ENSMMSG00000014504 #22	ENSMMSG00000014538	SNRPB2 (ENSMMSG00000014561) #26	OTOR (ENSMMSG00000014584) #27	ENSMMSG00000014612	AK6 (ENSMMSG00000014627)	NINL (ENSMMSG00000014660)
Siberian musk deer	MODERN SPECIES	1240	LAMP5 (ENSMMSG00000022362)	PAK5 (ENSMMSG00000022336)	ENSMMSG00000022329	ANKEF1 (ENSMMSG00000022306)	SNAP25 (ENSMMSG00000022267)	MKKS (ENSMMSG00000022245) #9	ENSMMSG00000022214 #10	JAG1 (ENSMMSG00000022131) #12	BTBD3 (ENSMMSG00000022098) #14	SPTLC3 (ENSMMSG00000022077) #16	ISM1 (ENSMMSG00000022050) #17	TASP1 (ENSMMSG00000021959) #18	ESF1 (ENSMMSG00000021908) #19	NDUFAF5 (ENSMMSG00000021842) #20	SEL1L2 (ENSMMSG00000021584) #21	ENSMMSG00000021552 #22	FLRT3 (ENSMMSG00000021543) #23	ENSMMSG00000021512
Bovidae	ANCESTRAL SPECIES	10	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000011669	ENSGT00390000000121	ENSGT00390000018872	ENSGT00790000123099.`c.a	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317	ENSGT00940000157945
Caprinae	ANCESTRAL SPECIES	23	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00940000153661.a.a.c.b.a.a.b	ENSGT00390000011669	ENSGT00390000000121	ENSGT00390000018872	ENSGT00790000123099.`c.a	ENSGT00950000182835.d.b	ENSGT00940000157638	ENSGT00940000158123	ENSGT00940000158317
Goat	DUPLICATION
Goat	MODERN SPECIES	4	MKKS (ENSCHIG00000024293) #9	SLX4IP (ENSCHIG00000013158) #10	JAG1 (ENSCHIG00000020996) #12	ENSCHIG00000007333	ENSCHIG00000026872	BTBD3 (ENSCHIG00000014908) #14	ENSCHIG00000024036	SPTLC3 (ENSCHIG00000007941) #16	ISM1 (ENSCHIG00000011776) #17	TASP1 (ENSCHIG00000024257) #18	ESF1 (ENSCHIG00000021188) #19	NDUFAF5 (ENSCHIG00000019544) #20	SEL1L2 (ENSCHIG00000015578) #21	ENSCHIG00000019039 #22	FLRT3 (ENSCHIG00000008580) #23	ENSCHIG00000012174 #22	ENSCHIG00000021403 #24	SNRPB2 (ENSCHIG00000009056) #26	OTOR (ENSCHIG00000021881) #27	NANP (ENSCHIG00000011994)	NINL (ENSCHIG00000021545)	ENSCHIG00000026526	FBH1 (ENSCHIG00000016303)	ENSCHIG00000012562	IL2RA (ENSCHIG00000009532)	ENSCHIG00000023204	PFKFB3 (ENSCHIG00000023423)	PRKCQ (ENSCHIG00000016059)	SFMBT2 (ENSCHIG00000013417)	ITIH5 (ENSCHIG00000021004)	ITIH2 (ENSCHIG00000023762)
Goat	MODERN SPECIES	4	ANKEF1 (ENSCHIG00000006499)	SNAP25 (ENSCHIG00000020293)	MKKS (ENSCHIG00000024293) #9	SLX4IP (ENSCHIG00000013158) #10	JAG1 (ENSCHIG00000020996) #12	ENSCHIG00000007333	ENSCHIG00000026872	BTBD3 (ENSCHIG00000014908) #14	ENSCHIG00000024036	SPTLC3 (ENSCHIG00000007941) #16	ISM1 (ENSCHIG00000011776) #17	TASP1 (ENSCHIG00000024257) #18	ESF1 (ENSCHIG00000021188) #19	NDUFAF5 (ENSCHIG00000019544) #20	SEL1L2 (ENSCHIG00000015578) #21	ENSCHIG00000019039 #22	FLRT3 (ENSCHIG00000008580) #23	ENSCHIG00000012174 #22	ENSCHIG00000021403 #24	SNRPB2 (ENSCHIG00000009056) #26	OTOR (ENSCHIG00000021881) #27	NANP (ENSCHIG00000011994)	NINL (ENSCHIG00000021545)	ENSCHIG00000026526	FBH1 (ENSCHIG00000016303)	ENSCHIG00000012562	IL2RA (ENSCHIG00000009532)	ENSCHIG00000023204	PFKFB3 (ENSCHIG00000023423)	PRKCQ (ENSCHIG00000016059)	SFMBT2 (ENSCHIG00000013417)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	4	SNAP25 (ENSOARG00020024794)	MKKS (ENSOARG00020024814) #9	ENSOARG00020024823	ENSOARG00020024832	JAG1 (ENSOARG00020024860) #12	BTBD3 (ENSOARG00020024955) #14	ENSOARG00020024973	SPTLC3 (ENSOARG00020024994) #16	ISM1 (ENSOARG00020025040) #17	TASP1 (ENSOARG00020025069) #18	ESF1 (ENSOARG00020025168) #19	NDUFAF5 (ENSOARG00020025188) #20	SEL1L2 (ENSOARG00020025230) #21	ENSOARG00020025339 #22	FLRT3 (ENSOARG00020025346) #23	ENSOARG00020025351 #22	ENSOARG00020025359	SNRPB2 (ENSOARG00020025367) #26	OTOR (ENSOARG00020025370) #27	NANP (ENSOARG00020025376)	ENSOARG00020003187	ENSOARG00020003227	ENSOARG00020003271	FBH1 (ENSOARG00020003456)	ENSOARG00020003590	IL2RA (ENSOARG00020003621)	RBM17 (ENSOARG00020003664)	PFKFB3 (ENSOARG00020003727)	PRKCQ (ENSOARG00020003986)	SFMBT2 (ENSOARG00020004270)	ENSOARG00020004315
Rambouillet Sheep	MODERN SPECIES	4	ENSOARG00020024754	ANKEF1 (ENSOARG00020024764)	SNAP25 (ENSOARG00020024794)	MKKS (ENSOARG00020024814) #9	ENSOARG00020024823	ENSOARG00020024832	JAG1 (ENSOARG00020024860) #12	BTBD3 (ENSOARG00020024955) #14	ENSOARG00020024973	SPTLC3 (ENSOARG00020024994) #16	ISM1 (ENSOARG00020025040) #17	TASP1 (ENSOARG00020025069) #18	ESF1 (ENSOARG00020025168) #19	NDUFAF5 (ENSOARG00020025188) #20	SEL1L2 (ENSOARG00020025230) #21	ENSOARG00020025339 #22	FLRT3 (ENSOARG00020025346) #23	ENSOARG00020025351 #22	ENSOARG00020025359	SNRPB2 (ENSOARG00020025367) #26	OTOR (ENSOARG00020025370) #27	NANP (ENSOARG00020025376)	ENSOARG00020003187	ENSOARG00020003227	ENSOARG00020003271	FBH1 (ENSOARG00020003456)	ENSOARG00020003590	IL2RA (ENSOARG00020003621)	RBM17 (ENSOARG00020003664)	PFKFB3 (ENSOARG00020003727)	PRKCQ (ENSOARG00020003986)
Bovinae	DUPLICATION
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000157404.lb.a #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000157404.lb.a #22
Bos_a	ANCESTRAL SPECIES	93	ENSGT00910000147842	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.lb.b #22	ENSGT00940000159704 #23	ENSGT00940000157404.lb.a #22	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000013968.f	ENSGT00390000003094
Wild yak	MODERN SPECIES	1926																ENSBMUG00000004659 #22	KIF16B (ENSBMUG00000004525)
Bovinae	ANCESTRAL SPECIES	51	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.mb #22	ENSGT00940000159704 #23	ENSGT00940000157404.lb.b #22	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a
Bos	ANCESTRAL SPECIES	41	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.mb #22	ENSGT00940000159704 #23	ENSGT00940000157404.lb.b #22	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000013968.f	ENSGT00390000003094	ENSGT00660000095541.a.a
Bos_b	ANCESTRAL SPECIES	46	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.mb #22	ENSGT00940000159704 #23	ENSGT00940000157404.lb.b #22	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000013968.f	ENSGT00390000003094	ENSGT00660000095541.a.a.b.a
Hybrid Bos Indicus	MODERN SPECIES	4	SNAP25 (ENSBIXG00005011134)	MKKS (ENSBIXG00005001030) #9	ENSBIXG00005011189	ENSBIXG00005011200 #10	ENSBIXG00005005376	JAG1 (ENSBIXG00005005377) #12	BTBD3 (ENSBIXG00005011337) #14	SPTLC3 (ENSBIXG00005000456) #16	ISM1 (ENSBIXG00005011480) #17	TASP1 (ENSBIXG00005011568) #18	ESF1 (ENSBIXG00005011651) #19	NDUFAF5 (ENSBIXG00005011689) #20	SEL1L2 (ENSBIXG00005011765) #21	FLRT3 (ENSBIXG00005011829) #23	ENSBIXG00005011866	MACROD2 (ENSBIXG00005001223) #22	ENSBIXG00005012131	KIF16B (ENSBIXG00005012292)	ENSBIXG00005012361	ENSBIXG00005000358 #26	OTOR (ENSBIXG00005000268) #27	ENSBIXG00005012425	NANP (ENSBIXG00005012466)	ENSBIXG00005000328	ENSBIXG00005006795	ENSBIXG00005012627	ENSBIXG00005012648	ENSBIXG00005000298	ENSBIXG00005012757	CAMK1D (ENSBIXG00005012797)	CDC123 (ENSBIXG00005001450)
Bos_a	ANCESTRAL SPECIES	93	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00910000147842	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.lb.b #22	ENSGT00940000159704 #23	ENSGT00940000157404.lb.a #22	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000013968.f	ENSGT00390000003094
Domestic yak	MODERN SPECIES	3	BTBD3 (ENSBGRG00000009832) #14	ENSBGRG00000009811	SPTLC3 (ENSBGRG00000009715) #16	ISM1 (ENSBGRG00000009625) #17	ENSBGRG00000009597	TASP1 (ENSBGRG00000009435) #18	ENSBGRG00000009410	ESF1 (ENSBGRG00000009325) #19	NDUFAF5 (ENSBGRG00000009078) #20	SEL1L2 (ENSBGRG00000008607) #21	ENSBGRG00000008582	FLRT3 (ENSBGRG00000008572) #23	ENSBGRG00000008562	ENSBGRG00000008551	ENSBGRG00000008527	MACROD2 (ENSBGRG00000008288) #22	ENSBGRG00000008214	KIF16B (ENSBGRG00000007083)	ENSBGRG00000007002	ENSBGRG00000006934 #26	OTOR (ENSBGRG00000006895) #27	ENSBGRG00000006879	ENSBGRG00000006815	CBLN4 (ENSBGRG00000006755)	DOK5 (ENSBGRG00000006644)	ENSBGRG00000006608	CYP24A1 (ENSBGRG00000006412)	ENSBGRG00000006080	ENSBGRG00000006035	ZNF217 (ENSBGRG00000005942)	ENSBGRG00000005903
Wild yak	MODERN SPECIES	1360											TASP1 (ENSBMUG00000017363) #18	ENSBMUG00000017383	ESF1 (ENSBMUG00000017408) #19	NDUFAF5 (ENSBMUG00000017456) #20	SEL1L2 (ENSBMUG00000017530) #21	ENSBMUG00000017550 #22	FLRT3 (ENSBMUG00000017594) #23
American bison	MODERN SPECIES	3115									SPTLC3 (ENSBBBG00000001569) #16	ISM1 (ENSBBBG00000013402) #17	TASP1 (ENSBBBG00000013413) #18	ESF1 (ENSBBBG00000007214) #19	NDUFAF5 (ENSBBBG00000013457) #20	SEL1L2 (ENSBBBG00000009094) #21	FLRT3 (ENSBBBG00000013533) #23	MACROD2 (ENSBBBG00000007597) #22
Bovinae	ANCESTRAL SPECIES	51	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.mb #22	ENSGT00940000159704 #23	ENSGT00940000157404.lb.b #22	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a
Bos	ANCESTRAL SPECIES	41	ENSGT00950000182899.A	ENSGT00910000147842	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.mb #22	ENSGT00940000159704 #23	ENSGT00940000157404.lb.b #22	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000013968.f	ENSGT00390000003094	ENSGT00660000095541.a.a
Bos_b	ANCESTRAL SPECIES	46	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404.mb #22	ENSGT00940000159704 #23	ENSGT00940000157404.lb.b #22	ENSGT00940000162838	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000013968.f	ENSGT00390000003094	ENSGT00660000095541.a.a.b.a
Cow	DUPLICATION
Cow	MODERN SPECIES	4	PAK5 (ENSBTAG00000017679)	ENSBTAG00000035199	ANKEF1 (ENSBTAG00000019726)	SNAP25 (ENSBTAG00000008323)	MKKS (ENSBTAG00000034987) #9	SLX4IP (ENSBTAG00000051621) #10	JAG1 (ENSBTAG00000012817) #12	ENSBTAG00000049787	BTBD3 (ENSBTAG00000048432) #14	SPTLC3 (ENSBTAG00000014252) #16	ISM1 (ENSBTAG00000017188) #17	TASP1 (ENSBTAG00000021614) #18	ESF1 (ENSBTAG00000007130) #19	NDUFAF5 (ENSBTAG00000004302) #20	SEL1L2 (ENSBTAG00000020120) #21	ENSBTAG00000048850 #22	FLRT3 (ENSBTAG00000003319) #23	MACROD2 (ENSBTAG00000034441) #22	KIF16B (ENSBTAG00000000939)	SNRPB2 (ENSBTAG00000027506) #26	OTOR (ENSBTAG00000000516) #27	ENSBTAG00000050355	NANP (ENSBTAG00000000686)	ENSBTAG00000023169	ENSBTAG00000017012	ENSBTAG00000036222	ENSBTAG00000049042	ENSBTAG00000022931	ENSBTAG00000051963	ENSBTAG00000040222	ENSBTAG00000054579
Cow	MODERN SPECIES	4	ANKEF1 (ENSBTAG00000019726)	SNAP25 (ENSBTAG00000008323)	MKKS (ENSBTAG00000034987) #9	SLX4IP (ENSBTAG00000051621) #10	JAG1 (ENSBTAG00000012817) #12	ENSBTAG00000049787	BTBD3 (ENSBTAG00000048432) #14	SPTLC3 (ENSBTAG00000014252) #16	ISM1 (ENSBTAG00000017188) #17	TASP1 (ENSBTAG00000021614) #18	ESF1 (ENSBTAG00000007130) #19	NDUFAF5 (ENSBTAG00000004302) #20	SEL1L2 (ENSBTAG00000020120) #21	ENSBTAG00000048850 #22	FLRT3 (ENSBTAG00000003319) #23	MACROD2 (ENSBTAG00000034441) #22	KIF16B (ENSBTAG00000000939)	SNRPB2 (ENSBTAG00000027506) #26	OTOR (ENSBTAG00000000516) #27	ENSBTAG00000050355	NANP (ENSBTAG00000000686)	ENSBTAG00000023169	ENSBTAG00000017012	ENSBTAG00000036222	ENSBTAG00000049042	ENSBTAG00000022931	ENSBTAG00000051963	ENSBTAG00000040222	ENSBTAG00000054579	CCDC3 (ENSBTAG00000040490)	CAMK1D (ENSBTAG00000008650)
Cetacea	ANCESTRAL SPECIES	3	ENSGT00960000189361	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT01010000228789	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461.a #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755
Blue whale	MODERN SPECIES	6	ENSBMSG00010011365	ANKEF1 (ENSBMSG00010011384)	SNAP25 (ENSBMSG00010011415)	ENSBMSG00010011439	MKKS (ENSBMSG00010011452) #9	SLX4IP (ENSBMSG00010011470) #10	JAG1 (ENSBMSG00010011538) #12	ENSBMSG00010011660	ENSBMSG00010011674 #14	SPTLC3 (ENSBMSG00010011702) #16	ISM1 (ENSBMSG00010011732) #17	TASP1 (ENSBMSG00010011765) #18	ESF1 (ENSBMSG00010011782) #19	NDUFAF5 (ENSBMSG00010011793) #20	SEL1L2 (ENSBMSG00010011863) #21	MACROD2 (ENSBMSG00010011961) #22	FLRT3 (ENSBMSG00010011999) #23	ENSBMSG00010012034 #24	SNRPB2 (ENSBMSG00010012064) #26	OTOR (ENSBMSG00010012080) #27	ENSBMSG00010012091	ENSBMSG00010012105	GINS1 (ENSBMSG00010012115)	ABHD12 (ENSBMSG00010012129)	PYGB (ENSBMSG00010012160)	ENTPD6 (ENSBMSG00010012199)	ENSBMSG00010012263	VSX1 (ENSBMSG00010012276)	ACSS1 (ENSBMSG00010012293)	APMAP (ENSBMSG00010012326)	CST7 (ENSBMSG00010012340)
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00960000189361	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT01010000228789	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461.a #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755
Sperm whale	MODERN SPECIES	5	LAMP5 (ENSPCTG00005006504)	ENSPCTG00005006562	PAK5 (ENSPCTG00005006579)	ENSPCTG00005006623	ANKEF1 (ENSPCTG00005006639)	SNAP25 (ENSPCTG00005006685)	MKKS (ENSPCTG00005006775) #9	JAG1 (ENSPCTG00005006843) #12	BTBD3 (ENSPCTG00005007008) #14	SPTLC3 (ENSPCTG00005007044) #16	ISM1 (ENSPCTG00005007071) #17	TASP1 (ENSPCTG00005007131) #18	ESF1 (ENSPCTG00005007279) #19	NDUFAF5 (ENSPCTG00005007331) #20	SEL1L2 (ENSPCTG00005007423) #21	MACROD2 (ENSPCTG00005007778) #22	FLRT3 (ENSPCTG00005007859) #23	KIF16B (ENSPCTG00005007936)	ENSPCTG00005008258	SNRPB2 (ENSPCTG00005008280) #26	OTOR (ENSPCTG00005008309) #27	GINS1 (ENSPCTG00005008454)	ABHD12 (ENSPCTG00005008481)	ENTPD6 (ENSPCTG00005008559)	VSX1 (ENSPCTG00005008966)	ENSPCTG00005009058	APMAP (ENSPCTG00005009088)	CST7 (ENSPCTG00005009166)	ENSPCTG00005009228	ENSPCTG00005009273	CSTL1 (ENSPCTG00005009306)
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT01010000228789	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000157905.cc	ENSGT00940000156461.a #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755
Dolphin	MODERN SPECIES	1916																MACROD2 (ENSTTRG00000012629) #22
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT01010000228789	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000157905.cc	ENSGT00940000154433.b.o	ENSGT00940000158206.o.b	ENSGT00940000156461.a #14	ENSGT00390000013931.a.a.b	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT01010000228897	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277
Vaquita	MODERN SPECIES	6	ENSPSNG00000008019	MKKS (ENSPSNG00000008055) #9	SLX4IP (ENSPSNG00000008089) #10	JAG1 (ENSPSNG00000008155) #12	ENSPSNG00000008370	ENSPSNG00000008405	ENSPSNG00000008425 #14	ENSPSNG00000008487	SPTLC3 (ENSPSNG00000008526) #16	ISM1 (ENSPSNG00000008569) #17	TASP1 (ENSPSNG00000008595) #18	ENSPSNG00000008634 #19	ENSPSNG00000008671 #19	NDUFAF5 (ENSPSNG00000008703) #20	SEL1L2 (ENSPSNG00000008798) #21	MACROD2 (ENSPSNG00000009064) #22	FLRT3 (ENSPSNG00000009154) #23	ENSPSNG00000009177	ENSPSNG00000009313 #24	SNRPB2 (ENSPSNG00000009531) #26	OTOR (ENSPSNG00000009573) #27	ENSPSNG00000009624	ENSPSNG00000009688	GINS1 (ENSPSNG00000009717)	ABHD12 (ENSPSNG00000009768)	PYGB (ENSPSNG00000009852)	ENTPD6 (ENSPSNG00000010051)	VSX1 (ENSPSNG00000010521)	ACSS1 (ENSPSNG00000010625)	APMAP (ENSPSNG00000010757)	CST7 (ENSPSNG00000010836)
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000157905.cc	ENSGT00940000154433.b.o	ENSGT00940000158206.o.b	ENSGT00940000156461.a #14	ENSGT00390000013931.a.a.b	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000010045.j.b	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT01010000228897	ENSGT00940000162977 #24	ENSGT00390000007741.a.c.b	ENSGT00390000007046.b.a.a.fb #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a
Narwhal	MODERN SPECIES	299	MKKS (ENSMMNG00015013036) #9	SLX4IP (ENSMMNG00015013051) #10	JAG1 (ENSMMNG00015013063) #12	ENSMMNG00015013086	ENSMMNG00015013095	ENSMMNG00015013105	BTBD3 (ENSMMNG00015013113) #14	ENSMMNG00015013122	SPTLC3 (ENSMMNG00015013140) #16	ISM1 (ENSMMNG00015013163) #17	TASP1 (ENSMMNG00015013172) #18	ENSMMNG00015013187	ESF1 (ENSMMNG00015013197) #19	NDUFAF5 (ENSMMNG00015013217) #20	SEL1L2 (ENSMMNG00015013258) #21	MACROD2 (ENSMMNG00015013344) #22	FLRT3 (ENSMMNG00015013368) #23	ENSMMNG00015013374	ENSMMNG00015013413 #24	ENSMMNG00015013482	SNRPB2 (ENSMMNG00015013493) #26	OTOR (ENSMMNG00015013507) #27	NANP (ENSMMNG00015013521)	ENSMMNG00015013530	GINS1 (ENSMMNG00015013542)	ABHD12 (ENSMMNG00015013554)	PYGB (ENSMMNG00015013588)	ENTPD6 (ENSMMNG00015013636)	VSX1 (ENSMMNG00015013692)	ACSS1 (ENSMMNG00015013713)	APMAP (ENSMMNG00015013737)
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	48				ENSDLEG00000020509	SPTLC3 (ENSDLEG00000020517) #16	ISM1 (ENSDLEG00000020524) #17	TASP1 (ENSDLEG00000020528) #18	ENSDLEG00000020532	ESF1 (ENSDLEG00000020536) #19	NDUFAF5 (ENSDLEG00000020541) #20	ENSDLEG00000020546	SEL1L2 (ENSDLEG00000020553) #21	ENSDLEG00000020599 #22	FLRT3 (ENSDLEG00000020605) #23	ENSDLEG00000020608	ENSDLEG00000020611 #22	ENSDLEG00000020618	ENSDLEG00000020625	KIF16B (ENSDLEG00000020641)	SNRPB2 (ENSDLEG00000004783) #26	OTOR (ENSDLEG00000004794) #27	NANP (ENSDLEG00000004799)	ENSDLEG00000004804	GINS1 (ENSDLEG00000004814)	ABHD12 (ENSDLEG00000004821)	PYGB (ENSDLEG00000004842)	ENTPD6 (ENSDLEG00000004868)	VSX1 (ENSDLEG00000004879)	ACSS1 (ENSDLEG00000004910)	APMAP (ENSDLEG00000004961)	CST7 (ENSDLEG00000004970)
Beluga whale	MODERN SPECIES	48							ENSDLEG00000020509	SPTLC3 (ENSDLEG00000020517) #16	ISM1 (ENSDLEG00000020524) #17	TASP1 (ENSDLEG00000020528) #18	ENSDLEG00000020532	ESF1 (ENSDLEG00000020536) #19	NDUFAF5 (ENSDLEG00000020541) #20	ENSDLEG00000020546	SEL1L2 (ENSDLEG00000020553) #21	ENSDLEG00000020599 #22	FLRT3 (ENSDLEG00000020605) #23	ENSDLEG00000020608	ENSDLEG00000020611 #22	ENSDLEG00000020618	ENSDLEG00000020625	KIF16B (ENSDLEG00000020641)	SNRPB2 (ENSDLEG00000004783) #26	OTOR (ENSDLEG00000004794) #27	NANP (ENSDLEG00000004799)	ENSDLEG00000004804	GINS1 (ENSDLEG00000004814)	ABHD12 (ENSDLEG00000004821)	PYGB (ENSDLEG00000004842)	ENTPD6 (ENSDLEG00000004868)	VSX1 (ENSDLEG00000004879)
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Equus	ANCESTRAL SPECIES	8	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260
Donkey	MODERN SPECIES	6	MKKS (ENSEASG00005001688) #9	ENSEASG00005023679	ENSEASG00005031559	SLX4IP (ENSEASG00005001698) #10	JAG1 (ENSEASG00005001715) #12	BTBD3 (ENSEASG00005025576) #14	SPTLC3 (ENSEASG00005001742) #16	ISM1 (ENSEASG00005001748) #17	TASP1 (ENSEASG00005001757) #18	ESF1 (ENSEASG00005001777) #19	NDUFAF5 (ENSEASG00005001785) #20	SEL1L2 (ENSEASG00005001792) #21	FLRT3 (ENSEASG00005001819) #23	ENSEASG00005001828	ENSEASG00005001824	MACROD2 (ENSEASG00005037061) #22	ENSEASG00005001842	ENSEASG00005001852 #24	ENSEASG00005023580	SNRPB2 (ENSEASG00005001883) #26	OTOR (ENSEASG00005001887) #27	PCSK2 (ENSEASG00005001899) #29	BFSP1 (ENSEASG00005001908) #30	DSTN (ENSEASG00005001923) #32	RRBP1 (ENSEASG00005001933) #33	BANF2 (ENSEASG00005034425) #34	SNX5 (ENSEASG00005001975) #35	MGME1 (ENSEASG00005001985) #36	OVOL2 (ENSEASG00005028180) #37	PET117 (ENSEASG00005029225)	KAT14 (ENSEASG00005001999)
Horse	DUPLICATION
Horse	MODERN SPECIES	14	ANKEF1 (ENSECAG00000011916)	SNAP25 (ENSECAG00000023077)	MKKS (ENSECAG00000019528) #9	ENSECAG00000058311	SLX4IP (ENSECAG00000018577) #10	JAG1 (ENSECAG00000012993) #12	BTBD3 (ENSECAG00000000722) #14	SPTLC3 (ENSECAG00000011822) #16	ISM1 (ENSECAG00000010587) #17	TASP1 (ENSECAG00000004119) #18	ESF1 (ENSECAG00000019188) #19	NDUFAF5 (ENSECAG00000011021) #20	SEL1L2 (ENSECAG00000005703) #21	ENSECAG00000046463	FLRT3 (ENSECAG00000002569) #23	ENSECAG00000057471 #22	DYNLL1 (ENSECAG00000008104)	ENSECAG00000037718	MACROD2 (ENSECAG00000000170) #22	ENSECAG00000044059	ENSECAG00000045095	KIF16B (ENSECAG00000007559) #24	ENSECAG00000048807	SNRPB2 (ENSECAG00000018407) #26	OTOR (ENSECAG00000017427) #27	PCSK2 (ENSECAG00000001142) #29	BFSP1 (ENSECAG00000021094) #30	DSTN (ENSECAG00000020103) #32	RRBP1 (ENSECAG00000014760) #33	MGME1 (ENSECAG00000012675) #36	SNX5 (ENSECAG00000017202) #35
Horse	MODERN SPECIES	14	ENSECAG00000058311	SLX4IP (ENSECAG00000018577) #10	JAG1 (ENSECAG00000012993) #12	BTBD3 (ENSECAG00000000722) #14	SPTLC3 (ENSECAG00000011822) #16	ISM1 (ENSECAG00000010587) #17	TASP1 (ENSECAG00000004119) #18	ESF1 (ENSECAG00000019188) #19	NDUFAF5 (ENSECAG00000011021) #20	SEL1L2 (ENSECAG00000005703) #21	ENSECAG00000046463	FLRT3 (ENSECAG00000002569) #23	ENSECAG00000057471 #22	DYNLL1 (ENSECAG00000008104)	ENSECAG00000037718	MACROD2 (ENSECAG00000000170) #22	ENSECAG00000044059	ENSECAG00000045095	KIF16B (ENSECAG00000007559) #24	ENSECAG00000048807	SNRPB2 (ENSECAG00000018407) #26	OTOR (ENSECAG00000017427) #27	PCSK2 (ENSECAG00000001142) #29	BFSP1 (ENSECAG00000021094) #30	DSTN (ENSECAG00000020103) #32	RRBP1 (ENSECAG00000014760) #33	MGME1 (ENSECAG00000012675) #36	SNX5 (ENSECAG00000017202) #35	OVOL2 (ENSECAG00000007899) #37	PET117 (ENSECAG00000035710)	KAT14 (ENSECAG00000017543)
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Megabat	MODERN SPECIES	3547												TASP1 (ENSPVAG00000001290) #18	ESF1 (ENSPVAG00000001295) #19	NDUFAF5 (ENSPVAG00000001297) #20	SEL1L2 (ENSPVAG00000001300) #21	MACROD2 (ENSPVAG00000001303) #22
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260	ENSGT00390000000549
Microbat	MODERN SPECIES	979	ENSMLUG00000027030	MKKS (ENSMLUG00000009387) #9	SLX4IP (ENSMLUG00000009402) #10	JAG1 (ENSMLUG00000009421) #12	ENSMLUG00000029200	BTBD3 (ENSMLUG00000003589) #14	SPTLC3 (ENSMLUG00000000973) #16	ISM1 (ENSMLUG00000000982) #17	TASP1 (ENSMLUG00000013068) #18	ENSMLUG00000028561	ESF1 (ENSMLUG00000013080) #19	NDUFAF5 (ENSMLUG00000013089) #20	SEL1L2 (ENSMLUG00000013093) #21	FLRT3 (ENSMLUG00000000376) #23	ENSMLUG00000026871	ENSMLUG00000013102 #22	ENSMLUG00000006574 #24	SNRPB2 (ENSMLUG00000008163) #26	ENSMLUG00000026931	OTOR (ENSMLUG00000008155) #27	PCSK2 (ENSMLUG00000002914) #29	ENSMLUG00000023134 #30	DSTN (ENSMLUG00000012174) #32	RRBP1 (ENSMLUG00000012180) #33	SNX5 (ENSMLUG00000002755) #35	ENSMLUG00000017787 #36	OVOL2 (ENSMLUG00000026760) #37	PET117 (ENSMLUG00000025281)	KAT14 (ENSMLUG00000007259)
Greater horseshoe bat	MODERN SPECIES	15	ANKEF1 (ENSRFEG00010019963)	ENSRFEG00010020030	ENSRFEG00010020052	SNAP25 (ENSRFEG00010020066)	MKKS (ENSRFEG00010020124) #9	SLX4IP (ENSRFEG00010020148) #10	JAG1 (ENSRFEG00010020177) #12	BTBD3 (ENSRFEG00010020340) #14	SPTLC3 (ENSRFEG00010005780) #16	ISM1 (ENSRFEG00010005824) #17	TASP1 (ENSRFEG00010005917) #18	ESF1 (ENSRFEG00010006010) #19	NDUFAF5 (ENSRFEG00010006058) #20	SEL1L2 (ENSRFEG00010006219) #21	ENSRFEG00010006464	MACROD2 (ENSRFEG00010006519) #22	FLRT3 (ENSRFEG00010006651) #23	ENSRFEG00010006689	KIF16B (ENSRFEG00010006763)	SNRPB2 (ENSRFEG00010006960) #26	OTOR (ENSRFEG00010007000) #27	PCSK2 (ENSRFEG00010007050) #29	BFSP1 (ENSRFEG00010007173) #30	RRBP1 (ENSRFEG00010007477) #33	BANF2 (ENSRFEG00010008240) #34	SNX5 (ENSRFEG00010008295) #35	MGME1 (ENSRFEG00010008379) #36	OVOL2 (ENSRFEG00010008405) #37	PET117 (ENSRFEG00010008472)	KAT14 (ENSRFEG00010008509)	ZNF133 (ENSRFEG00010008595)
Carnivora	ANCESTRAL SPECIES	20	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260	ENSGT00390000000549
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260	ENSGT00390000000549
Cat	MODERN SPECIES	2	PAK5 (ENSFCAG00000005955)	ENSFCAG00000006586	ENSFCAG00000048283	ANKEF1 (ENSFCAG00000009160)	SNAP25 (ENSFCAG00000010050)	MKKS (ENSFCAG00000008542) #9	SLX4IP (ENSFCAG00000022559) #10	JAG1 (ENSFCAG00000002195) #12	BTBD3 (ENSFCAG00000030089) #14	SPTLC3 (ENSFCAG00000014296) #16	ISM1 (ENSFCAG00000001828) #17	TASP1 (ENSFCAG00000001829) #18	ESF1 (ENSFCAG00000000919) #19	NDUFAF5 (ENSFCAG00000027094) #20	SEL1L2 (ENSFCAG00000000921) #21	MACROD2 (ENSFCAG00000033400) #22	FLRT3 (ENSFCAG00000025021) #23	KIF16B (ENSFCAG00000014489) #24	SNRPB2 (ENSFCAG00000026115) #26	OTOR (ENSFCAG00000004622) #27	PCSK2 (ENSFCAG00000011356) #29	BFSP1 (ENSFCAG00000028450) #30	DSTN (ENSFCAG00000038423) #32	RRBP1 (ENSFCAG00000011082) #33	BANF2 (ENSFCAG00000024351) #34	SNX5 (ENSFCAG00000005801) #35	MGME1 (ENSFCAG00000023195) #36	OVOL2 (ENSFCAG00000027530) #37	PET117 (ENSFCAG00000035351)	KAT14 (ENSFCAG00000005811)	ZNF133 (ENSFCAG00000014251)
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT01100000267093	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926.a.a	ENSGT00390000001146	ENSGT00940000162260
Tiger	MODERN SPECIES	248	ENSPTIG00000006628	PAK5 (ENSPTIG00000016922)	ENSPTIG00000006566	ANKEF1 (ENSPTIG00000015941)	SNAP25 (ENSPTIG00000014833)	MKKS (ENSPTIG00000013549) #9	SLX4IP (ENSPTIG00000013057) #10	JAG1 (ENSPTIG00000010646) #12	BTBD3 (ENSPTIG00000007433) #14	SPTLC3 (ENSPTIG00000006815) #16	ISM1 (ENSPTIG00000005717) #17	TASP1 (ENSPTIG00000021131) #18	ESF1 (ENSPTIG00000020063) #19	NDUFAF5 (ENSPTIG00000019550) #20	SEL1L2 (ENSPTIG00000016406) #21	ENSPTIG00000015183 #22	FLRT3 (ENSPTIG00000006287) #23	ENSPTIG00000014041	ENSPTIG00000006930 #24	SNRPB2 (ENSPTIG00000006217) #26
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00950000182843.a.a.a.b.a.a	ENSGT01100000264118	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204257	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000168989	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926.a.a	ENSGT00390000001146	ENSGT00940000162260
leopard	MODERN SPECIES	39	ENSPPRG00000019777	ANKEF1 (ENSPPRG00000005375)	SNAP25 (ENSPPRG00000006036)	ENSPPRG00000007442	MKKS (ENSPPRG00000008533) #9	SLX4IP (ENSPPRG00000008584) #10	JAG1 (ENSPPRG00000008773) #12	BTBD3 (ENSPPRG00000009239) #14	SPTLC3 (ENSPPRG00000009355) #16	ISM1 (ENSPPRG00000009567) #17	TASP1 (ENSPPRG00000010022) #18	ESF1 (ENSPPRG00000012007) #19	NDUFAF5 (ENSPPRG00000012600) #20	SEL1L2 (ENSPPRG00000014250) #21	FLRT3 (ENSPPRG00000020361) #23	MACROD2 (ENSPPRG00000016417) #22	ENSPPRG00000017513	ENSPPRG00000025019 #24	ENSPPRG00000024995 #26	OTOR (ENSPPRG00000024982) #27	PCSK2 (ENSPPRG00000024769) #29	BFSP1 (ENSPPRG00000024258) #30	DSTN (ENSPPRG00000024116) #32	RRBP1 (ENSPPRG00000003892) #33	BANF2 (ENSPPRG00000004962) #34	SNX5 (ENSPPRG00000005486) #35	MGME1 (ENSPPRG00000005711) #36	OVOL2 (ENSPPRG00000006276) #37	ENSPPRG00000006693	KAT14 (ENSPPRG00000008577)	ZNF133 (ENSPPRG00000010030)
lion	MODERN SPECIES	3	ENSPLOG00000003096	ENSPLOG00000003086	MKKS (ENSPLOG00000003029) #9	ENSPLOG00000003019	ENSPLOG00000003012	SLX4IP (ENSPLOG00000002989) #10	JAG1 (ENSPLOG00000002948) #12	BTBD3 (ENSPLOG00000002916) #14	SPTLC3 (ENSPLOG00000002876) #16	ISM1 (ENSPLOG00000002841) #17	TASP1 (ENSPLOG00000002804) #18	ESF1 (ENSPLOG00000002741) #19	NDUFAF5 (ENSPLOG00000002711) #20	SEL1L2 (ENSPLOG00000002598) #21	FLRT3 (ENSPLOG00000002553) #23	MACROD2 (ENSPLOG00000002497) #22	ENSPLOG00000002471	ENSPLOG00000002418 #24	ENSPLOG00000002364 #26	OTOR (ENSPLOG00000002345) #27	PCSK2 (ENSPLOG00000002273) #29	BFSP1 (ENSPLOG00000002231) #30	DSTN (ENSPLOG00000002214) #32	RRBP1 (ENSPLOG00000002037) #33	BANF2 (ENSPLOG00000001961) #34	SNX5 (ENSPLOG00000001918) #35	MGME1 (ENSPLOG00000001887) #36	OVOL2 (ENSPLOG00000001826) #37	ENSPLOG00000001815	KAT14 (ENSPLOG00000001794)	ZNF133 (ENSPLOG00000001772)
Caniformia	ANCESTRAL SPECIES		ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260	ENSGT00390000000549
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00940000162260	ENSGT00390000000549
Ursidae	ANCESTRAL SPECIES	14	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00660000097475
Ursus	ANCESTRAL SPECIES	1	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881.x.a #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23
Polar bear	MODERN SPECIES	253	LAMP5 (ENSUMAG00000007592)	PAK5 (ENSUMAG00000007598)	ENSUMAG00000007605	ANKEF1 (ENSUMAG00000007610)	SNAP25 (ENSUMAG00000007629)	MKKS (ENSUMAG00000007639) #9	SLX4IP (ENSUMAG00000007645) #10	JAG1 (ENSUMAG00000007745) #12	BTBD3 (ENSUMAG00000008482) #14	SPTLC3 (ENSUMAG00000008497) #16	ISM1 (ENSUMAG00000008548) #17	TASP1 (ENSUMAG00000008569) #18	ESF1 (ENSUMAG00000008579) #19	NDUFAF5 (ENSUMAG00000008586) #20	SEL1L2 (ENSUMAG00000008600) #21	ENSUMAG00000008631 #22	FLRT3 (ENSUMAG00000008656) #23
American black bear	MODERN SPECIES	1591																ENSUAMG00000002935 #22
Giant Panda	MODERN SPECIES	4	LAMP5 (ENSAMEG00000027299)	PAK5 (ENSAMEG00000002555)	ENSAMEG00000029909	ANKEF1 (ENSAMEG00000002566)	SNAP25 (ENSAMEG00000031368)	MKKS (ENSAMEG00000003668) #9	ENSAMEG00000003686 #10	JAG1 (ENSAMEG00000003690) #12	BTBD3 (ENSAMEG00000003794) #14	SPTLC3 (ENSAMEG00000008783) #16	ISM1 (ENSAMEG00000008811) #17	TASP1 (ENSAMEG00000008816) #18	ESF1 (ENSAMEG00000008830) #19	NDUFAF5 (ENSAMEG00000008837) #20	SEL1L2 (ENSAMEG00000008859) #21	MACROD2 (ENSAMEG00000005079) #22	FLRT3 (ENSAMEG00000019739) #23	ENSAMEG00000005047 #24	SNRPB2 (ENSAMEG00000016500) #26	OTOR (ENSAMEG00000016496) #27	PCSK2 (ENSAMEG00000005408) #29	BFSP1 (ENSAMEG00000005392) #30	DSTN (ENSAMEG00000005374) #32	RRBP1 (ENSAMEG00000005309) #33	BANF2 (ENSAMEG00000025778) #34	SNX5 (ENSAMEG00000005282) #35	MGME1 (ENSAMEG00000005278) #36	OVOL2 (ENSAMEG00000025156) #37	PET117 (ENSAMEG00000024609)	KAT14 (ENSAMEG00000005253)	ENSAMEG00000027804
Mustelinae	ANCESTRAL SPECIES	43	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00390000001146	ENSGT00940000162260	ENSGT00390000000549
American mink	DUPLICATION
American mink	MODERN SPECIES	28	PAK7 (ENSNVIG00000017934)	ENSNVIG00000017920	ANKEF1 (ENSNVIG00000017906)	ENSNVIG00000017897	SNAP25 (ENSNVIG00000017860)	MKKS (ENSNVIG00000017843) #9	JAG1 (ENSNVIG00000017758) #12	ENSNVIG00000017739	BTBD3 (ENSNVIG00000017698) #14	SPTC3 (ENSNVIG00000017652) #16	ISM1 (ENSNVIG00000017629) #17	TASP1 (ENSNVIG00000017586) #18	ESF1 (ENSNVIG00000017569) #19	NDUFAF5 (ENSNVIG00000017538) #20	SEL1L2 (ENSNVIG00000017421) #21	ENSNVIG00000017400 #22	FLRT3 (ENSNVIG00000017394) #23
American mink	MODERN SPECIES	209																ENSNVIG00000014089 #22	ENSNVIG00000014144 #24	ENSNVIG00000014307	SNRPB2 (ENSNVIG00000014312) #26	OTOR (ENSNVIG00000014322) #27	NEC2 (ENSNVIG00000014379) #29	ENSNVIG00000014445	BFSP1 (ENSNVIG00000014456) #30	DSTN (ENSNVIG00000014483) #32	RRBP1 (ENSNVIG00000014503) #33	BANF2 (ENSNVIG00000014712) #34	SNX5 (ENSNVIG00000014735) #35	MGME1 (ENSNVIG00000014780) #36	OVOL2 (ENSNVIG00000014783) #37	KAT14 (ENSNVIG00000014790)
Ferret	DUPLICATION
Ferret	MODERN SPECIES	204								BTBD3 (ENSMPUG00000001471) #14	SPTLC3 (ENSMPUG00000001468) #16	ENSMPUG00000001466	ISM1 (ENSMPUG00000001461) #17	TASP1 (ENSMPUG00000001455) #18	ESF1 (ENSMPUG00000001450) #19	NDUFAF5 (ENSMPUG00000001446) #20	SEL1L2 (ENSMPUG00000001441) #21	ENSMPUG00000001439 #22	FLRT3 (ENSMPUG00000019278) #23	ENSMPUG00000001433 #22	KIF16B (ENSMPUG00000001424)	ENSMPUG00000001392 #26	OTOR (ENSMPUG00000001388) #27	ENSMPUG00000001384 #29	ENSMPUG00000001379 #29	BFSP1 (ENSMPUG00000001361) #30	DSTN (ENSMPUG00000001358) #32	RRBP1 (ENSMPUG00000001305) #33	BANF2 (ENSMPUG00000001304) #34	SNX5 (ENSMPUG00000001302) #35	MGME1 (ENSMPUG00000001299) #36	OVOL2 (ENSMPUG00000001295) #37	KAT14 (ENSMPUG00000001292)
Ferret	MODERN SPECIES	204						BTBD3 (ENSMPUG00000001471) #14	SPTLC3 (ENSMPUG00000001468) #16	ENSMPUG00000001466	ISM1 (ENSMPUG00000001461) #17	TASP1 (ENSMPUG00000001455) #18	ESF1 (ENSMPUG00000001450) #19	NDUFAF5 (ENSMPUG00000001446) #20	SEL1L2 (ENSMPUG00000001441) #21	ENSMPUG00000001439 #22	FLRT3 (ENSMPUG00000019278) #23	ENSMPUG00000001433 #22	KIF16B (ENSMPUG00000001424)	ENSMPUG00000001392 #26	OTOR (ENSMPUG00000001388) #27	ENSMPUG00000001384 #29	ENSMPUG00000001379 #29	BFSP1 (ENSMPUG00000001361) #30	DSTN (ENSMPUG00000001358) #32	RRBP1 (ENSMPUG00000001305) #33	BANF2 (ENSMPUG00000001304) #34	SNX5 (ENSMPUG00000001302) #35	MGME1 (ENSMPUG00000001299) #36	OVOL2 (ENSMPUG00000001295) #37	KAT14 (ENSMPUG00000001292)	ZNF133 (ENSMPUG00000001287)	DZANK1 (ENSMPUG00000001282)
Canidae	ANCESTRAL SPECIES	19	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00390000012420.g.b	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.hb.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000162325.B.m	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Canis_lupus	ANCESTRAL SPECIES	13	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00390000012420.g.b	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a.hb.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT01090000260046.e.b.b.a.b.a.b	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000162325.B.m	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00390000001146
Dog	MODERN SPECIES	16	MKKS (ENSCAFG00845024406) #9	ENSCAFG00845024358	SLX4IP (ENSCAFG00845024277) #10	JAG1 (ENSCAFG00845024085) #12	ENSCAFG00845023966	ENSCAFG00845023935	BTBD3 (ENSCAFG00845023762) #14	SPTLC3 (ENSCAFG00845023443) #16	ISM1 (ENSCAFG00845023174) #17	TASP1 (ENSCAFG00845022281) #18	ESF1 (ENSCAFG00845021836) #19	NDUFAF5 (ENSCAFG00845021712) #20	ENSCAFG00845021581 #21	FLRT3 (ENSCAFG00845021537) #23	ENSCAFG00845021499	MACROD2 (ENSCAFG00845021310) #22	ENSCAFG00845019737 #24	SNRPB2 (ENSCAFG00845019488) #26	OTOR (ENSCAFG00845019434) #27	ENSCAFG00845019407	PCSK2 (ENSCAFG00845019218) #29	BFSP1 (ENSCAFG00845019013) #30	ENSCAFG00845018960	ENSCAFG00845018861 #32	RRBP1 (ENSCAFG00845017905) #33	BANF2 (ENSCAFG00845017652) #34	SNX5 (ENSCAFG00845017233) #35	MGME1 (ENSCAFG00845016974) #36	OVOL2 (ENSCAFG00845016881) #37	PET117 (ENSCAFG00845016583)	KAT14 (ENSCAFG00845016695)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	343	SNAP25 (ENSCAFG00020027561)	MKKS (ENSCAFG00020027558) #9	ENSCAFG00020027556	SLX4IP (ENSCAFG00020027554) #10	JAG1 (ENSCAFG00020027546) #12	ENSCAFG00020027539	BTBD3 (ENSCAFG00020027538) #14	ENSCAFG00020027536	SPTLC3 (ENSCAFG00020027535) #16	ISM1 (ENSCAFG00020027534) #17	ENSCAFG00020027532 #18	ESF1 (ENSCAFG00020027530) #19	NDUFAF5 (ENSCAFG00020027529) #20	SEL1L2 (ENSCAFG00020027528) #21	ENSCAFG00020027527 #22	ENSCAFG00020027525 #22	ENSCAFG00020027522 #24	ENSCAFG00020027520 #26	OTOR (ENSCAFG00020027519) #27	PCSK2 (ENSCAFG00020027517) #29	BFSP1 (ENSCAFG00020027516) #30	ENSCAFG00020027515	ENSCAFG00020027514 #32	RRBP1 (ENSCAFG00020027513) #33	BANF2 (ENSCAFG00020027512) #34	SNX5 (ENSCAFG00020027510) #35	MGME1 (ENSCAFG00020027509) #36	OVOL2 (ENSCAFG00020027506) #37	KAT14 (ENSCAFG00020027504)	ZNF133 (ENSCAFG00020027503)	DZANK1 (ENSCAFG00020027502)
Dingo	MODERN SPECIES	343	ANKEF1 (ENSCAFG00020027562)	SNAP25 (ENSCAFG00020027561)	MKKS (ENSCAFG00020027558) #9	ENSCAFG00020027556	SLX4IP (ENSCAFG00020027554) #10	JAG1 (ENSCAFG00020027546) #12	ENSCAFG00020027539	BTBD3 (ENSCAFG00020027538) #14	ENSCAFG00020027536	SPTLC3 (ENSCAFG00020027535) #16	ISM1 (ENSCAFG00020027534) #17	ENSCAFG00020027532 #18	ESF1 (ENSCAFG00020027530) #19	NDUFAF5 (ENSCAFG00020027529) #20	SEL1L2 (ENSCAFG00020027528) #21	ENSCAFG00020027527 #22	ENSCAFG00020027525 #22	ENSCAFG00020027522 #24	ENSCAFG00020027520 #26	OTOR (ENSCAFG00020027519) #27	PCSK2 (ENSCAFG00020027517) #29	BFSP1 (ENSCAFG00020027516) #30	ENSCAFG00020027515	ENSCAFG00020027514 #32	RRBP1 (ENSCAFG00020027513) #33	BANF2 (ENSCAFG00020027512) #34	SNX5 (ENSCAFG00020027510) #35	MGME1 (ENSCAFG00020027509) #36	OVOL2 (ENSCAFG00020027506) #37	KAT14 (ENSCAFG00020027504)	ZNF133 (ENSCAFG00020027503)
Red fox	DUPLICATION
Red fox	MODERN SPECIES	40	TBC1D32 (ENSVVUG00000014396)	GJA1 (ENSVVUG00000014389)	ENSVVUG00000014381	ENSVVUG00000014369	ENSVVUG00000014365	SPTLC3 (ENSVVUG00000014355) #16	ISM1 (ENSVVUG00000014349) #17	TASP1 (ENSVVUG00000014321) #18	ESF1 (ENSVVUG00000014318) #19	NDUFAF5 (ENSVVUG00000014314) #20	ENSVVUG00000014312	SEL1L2 (ENSVVUG00000014288) #21	ENSVVUG00000014282 #22	ENSVVUG00000014270	FLRT3 (ENSVVUG00000014266) #23	ENSVVUG00000014232 #22	KIF16B (ENSVVUG00000014146) #24	SNRPB2 (ENSVVUG00000014114) #26	OTOR (ENSVVUG00000014110) #27	ENSVVUG00000014108	PCSK2 (ENSVVUG00000014102) #29	BFSP1 (ENSVVUG00000014097) #30	ENSVVUG00000014095	DSTN (ENSVVUG00000014088) #32	RRBP1 (ENSVVUG00000013194) #33	BANF2 (ENSVVUG00000013129) #34	SNX5 (ENSVVUG00000013100) #35	MGME1 (ENSVVUG00000013096) #36	OVOL2 (ENSVVUG00000013094) #37	PET117 (ENSVVUG00000013063)	KAT14 (ENSVVUG00000013037)
Red fox	MODERN SPECIES	40	MCM9 (ENSVVUG00000015719)	FAM184A (ENSVVUG00000015630)	MAN1A1 (ENSVVUG00000014582)	TBC1D32 (ENSVVUG00000014396)	GJA1 (ENSVVUG00000014389)	ENSVVUG00000014381	ENSVVUG00000014369	ENSVVUG00000014365	SPTLC3 (ENSVVUG00000014355) #16	ISM1 (ENSVVUG00000014349) #17	TASP1 (ENSVVUG00000014321) #18	ESF1 (ENSVVUG00000014318) #19	NDUFAF5 (ENSVVUG00000014314) #20	ENSVVUG00000014312	SEL1L2 (ENSVVUG00000014288) #21	ENSVVUG00000014282 #22	ENSVVUG00000014270	FLRT3 (ENSVVUG00000014266) #23	ENSVVUG00000014232 #22	KIF16B (ENSVVUG00000014146) #24	SNRPB2 (ENSVVUG00000014114) #26	OTOR (ENSVVUG00000014110) #27	ENSVVUG00000014108	PCSK2 (ENSVVUG00000014102) #29	BFSP1 (ENSVVUG00000014097) #30	ENSVVUG00000014095	DSTN (ENSVVUG00000014088) #32	RRBP1 (ENSVVUG00000013194) #33	BANF2 (ENSVVUG00000013129) #34	SNX5 (ENSVVUG00000013100) #35	MGME1 (ENSVVUG00000013096) #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157404 #22
Common shrew	MODERN SPECIES	5251																MACROD2 (ENSSARG00000004564) #22
Hedgehog	MODERN SPECIES	6748																MACROD2 (ENSEEUG00000004815) #22
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00390000000549
Xenarthra	ANCESTRAL SPECIES	619										ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23
Sloth	MODERN SPECIES	6000																MACROD2 (ENSCHOG00000013506) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3362									ENSDNOG00000047472	ENSDNOG00000044584 #16	ISM1 (ENSDNOG00000032534) #17	TASP1 (ENSDNOG00000033632) #18	ESF1 (ENSDNOG00000019409) #19	NDUFAF5 (ENSDNOG00000019414) #20	SEL1L2 (ENSDNOG00000000570) #21	ENSDNOG00000039202 #22	FLRT3 (ENSDNOG00000043104) #23	ENSDNOG00000044705	PTGIS (ENSDNOG00000025660)	KCNB1 (ENSDNOG00000000147)	ENSDNOG00000037300	ZNFX1 (ENSDNOG00000037538)	DDX27 (ENSDNOG00000019453)	ENSDNOG00000038972	STAU1 (ENSDNOG00000014933)	CSE1L (ENSDNOG00000014906)	ARFGEF2 (ENSDNOG00000014873)
Armadillo	MODERN SPECIES	4262																ENSDNOG00000038579 #22	ENSDNOG00000048636	ENSDNOG00000032022	ENSDNOG00000032495	KIF16B (ENSDNOG00000009561)	SNRPB2 (ENSDNOG00000014137) #26	OTOR (ENSDNOG00000014151) #27	ENSDNOG00000044596
Afrotheria	ANCESTRAL SPECIES	3	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00390000000549
Tenrec	MODERN SPECIES	6525																MACROD2 (ENSETEG00000004916) #22	ENSETEG00000004921
Afrotheria_a	ANCESTRAL SPECIES	3	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00520000060326	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00390000000549
Elephant	MODERN SPECIES	180	LAMP5 (ENSLAFG00000008107)	PAK5 (ENSLAFG00000008110)	ENSLAFG00000027252	ANKEF1 (ENSLAFG00000015532)	SNAP25 (ENSLAFG00000013794)	MKKS (ENSLAFG00000004067) #9	JAG1 (ENSLAFG00000018468) #12	ENSLAFG00000032435	BTBD3 (ENSLAFG00000002708) #14	SPTLC3 (ENSLAFG00000013239) #16	ISM1 (ENSLAFG00000009111) #17	TASP1 (ENSLAFG00000000916) #18	ESF1 (ENSLAFG00000005479) #19	NDUFAF5 (ENSLAFG00000005487) #20	SEL1L2 (ENSLAFG00000016340) #21	ENSLAFG00000013323 #22	FLRT3 (ENSLAFG00000006446) #23	ENSLAFG00000030655	ENSLAFG00000022629	SNRPB2 (ENSLAFG00000008775) #26	OTOR (ENSLAFG00000030261) #27	PCSK2 (ENSLAFG00000030779) #29	BFSP1 (ENSLAFG00000022404) #30	DSTN (ENSLAFG00000015679) #32	ENSLAFG00000015681 #33	BANF2 (ENSLAFG00000009720) #34	SNX5 (ENSLAFG00000010593) #35	MGME1 (ENSLAFG00000010595) #36	OVOL2 (ENSLAFG00000010597) #37	PET117 (ENSLAFG00000028489)	KAT14 (ENSLAFG00000005652)
Hyrax	MODERN SPECIES	5556																MACROD2 (ENSPCAG00000009751) #22
Marsupialia	ANCESTRAL SPECIES	19	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00390000000549
Opossum	DUPLICATION
Opossum	MODERN SPECIES		MKKS (ENSMODG00000004860) #9	JAG1 (ENSMODG00000004910) #12	ENSMODG00000047165	BTBD3 (ENSMODG00000004924) #14	SPTLC3 (ENSMODG00000005015) #16	ISM1 (ENSMODG00000005022) #17	ENSMODG00000023134	TASP1 (ENSMODG00000005044) #18	ENSMODG00000038816	ENSMODG00000005052	ESF1 (ENSMODG00000005066) #19	NDUFAF5 (ENSMODG00000005082) #20	ENSMODG00000005209	ENSMODG00000005203	SEL1L2 (ENSMODG00000005222) #21	ENSMODG00000005277 #22	FLRT3 (ENSMODG00000005288) #23	ENSMODG00000046291 #22	ENSMODG00000005375	SNRPB2 (ENSMODG00000005392) #26	OTOR (ENSMODG00000005398) #27	PCSK2 (ENSMODG00000005404) #29	BFSP1 (ENSMODG00000005413) #30	DSTN (ENSMODG00000005428) #32	ENSMODG00000005445 #34	SNX5 (ENSMODG00000005489) #35	MGME1 (ENSMODG00000005495) #36	OVOL2 (ENSMODG00000005504) #37	PET117 (ENSMODG00000048522)	KAT14 (ENSMODG00000005543)	ENSMODG00000048005
Opossum	MODERN SPECIES		ENSMODG00000047165	BTBD3 (ENSMODG00000004924) #14	SPTLC3 (ENSMODG00000005015) #16	ISM1 (ENSMODG00000005022) #17	ENSMODG00000023134	TASP1 (ENSMODG00000005044) #18	ENSMODG00000038816	ENSMODG00000005052	ESF1 (ENSMODG00000005066) #19	NDUFAF5 (ENSMODG00000005082) #20	ENSMODG00000005209	ENSMODG00000005203	SEL1L2 (ENSMODG00000005222) #21	ENSMODG00000005277 #22	FLRT3 (ENSMODG00000005288) #23	ENSMODG00000046291 #22	ENSMODG00000005375	SNRPB2 (ENSMODG00000005392) #26	OTOR (ENSMODG00000005398) #27	PCSK2 (ENSMODG00000005404) #29	BFSP1 (ENSMODG00000005413) #30	DSTN (ENSMODG00000005428) #32	ENSMODG00000005445 #34	SNX5 (ENSMODG00000005489) #35	MGME1 (ENSMODG00000005495) #36	OVOL2 (ENSMODG00000005504) #37	PET117 (ENSMODG00000048522)	KAT14 (ENSMODG00000005543)	ENSMODG00000048005	DZANK1 (ENSMODG00000005606)	ENSMODG00000005624
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349.b #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146	ENSGT00390000000549
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656.qb.a	ENSGT00940000158656.qb.b	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349.b #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656.qb.a	ENSGT00940000158656.qb.b	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00950000183000.c.a.b #32	ENSGT00940000158015 #33	ENSGT00940000162003 #34	ENSGT00940000154632 #35	ENSGT00390000003349.b #36	ENSGT00940000159359 #37	ENSGT00520000059926	ENSGT00390000001146
koala	MODERN SPECIES	1	ENSPCIG00000026932	ENSPCIG00000026935	ANKEF1 (ENSPCIG00000026937)	SNAP25 (ENSPCIG00000026939)	MKKS (ENSPCIG00000024039) #9	JAG1 (ENSPCIG00000024043) #12	BTBD3 (ENSPCIG00000029490) #14	SPTLC3 (ENSPCIG00000029486) #16	ENSPCIG00000033242	ENSPCIG00000029489	ISM1 (ENSPCIG00000029484) #17	TASP1 (ENSPCIG00000032434) #18	ESF1 (ENSPCIG00000019331) #19	NDUFAF5 (ENSPCIG00000019329) #20	SEL1L2 (ENSPCIG00000019324) #21	ENSPCIG00000019322 #22	FLRT3 (ENSPCIG00000019323) #23	KIF16B (ENSPCIG00000000231)	SNRPB2 (ENSPCIG00000000357) #26	OTOR (ENSPCIG00000034758) #27	PCSK2 (ENSPCIG00000000394) #29	BFSP1 (ENSPCIG00000000414) #30	DSTN (ENSPCIG00000000641) #32	ENSPCIG00000000650 #33	ENSPCIG00000032617 #34	ENSPCIG00000000714	SNX5 (ENSPCIG00000000749) #35	MGME1 (ENSPCIG00000000777) #36	OVOL2 (ENSPCIG00000025433) #37	ENSPCIG00000037388	KAT14 (ENSPCIG00000000838)
Common wonbat	MODERN SPECIES	1073	ENSVURG00010007519	ANKEF1 (ENSVURG00010007502)	SNAP25 (ENSVURG00010007480)	MKKS (ENSVURG00010007467) #9	JAG1 (ENSVURG00010007418) #12	BTBD3 (ENSVURG00010007389) #14	ENSVURG00010007384	ENSVURG00010007373	ENSVURG00010007368	ENSVURG00010007362	SPTLC3 (ENSVURG00010007353) #16	ISM1 (ENSVURG00010007337) #17	ENSVURG00010007321 #18	ESF1 (ENSVURG00010007304) #19	NDUFAF5 (ENSVURG00010007287) #20	ENSVURG00010007268 #22	FLRT3 (ENSVURG00010007258) #23	ENSVURG00010007164 #24	SNRPB2 (ENSVURG00010007126) #26	PCSK2 (ENSVURG00010007104) #29	BFSP1 (ENSVURG00010007074) #30	DSTN (ENSVURG00010007057) #32	ENSVURG00010006612 #33	BANF2 (ENSVURG00010006569) #34	SNX5 (ENSVURG00010006490) #35	ENSVURG00010006467 #36	OVOL2 (ENSVURG00010006395) #37	ENSVURG00010006385	KAT14 (ENSVURG00010006371)	DZANK1 (ENSVURG00010006342)	POLR3F (ENSVURG00010006328)
Wallaby	MODERN SPECIES	1066																MACROD2 (ENSMEUG00000004972) #22
Tasmanian devil	MODERN SPECIES	1	PLCB4 (ENSSHAG00000012910)	LAMP5 (ENSSHAG00000012635)	PAK5 (ENSSHAG00000011856)	ANKEF1 (ENSSHAG00000008375)	SNAP25 (ENSSHAG00000005450)	MKKS (ENSSHAG00000001723) #9	JAG1 (ENSSHAG00000018470) #12	BTBD3 (ENSSHAG00000024298) #14	ENSSHAG00000027404	SPTLC3 (ENSSHAG00000010254) #16	ISM1 (ENSSHAG00000029948) #17	TASP1 (ENSSHAG00000005139) #18	ESF1 (ENSSHAG00000000449) #19	NDUFAF5 (ENSSHAG00000015542) #20	SEL1L2 (ENSSHAG00000018909) #21	ENSSHAG00000025801 #22	FLRT3 (ENSSHAG00000025725) #23	ENSSHAG00000024359	KIF16B (ENSSHAG00000015822)	SNRPB2 (ENSSHAG00000024149) #26	PCSK2 (ENSSHAG00000010370) #29	BFSP1 (ENSSHAG00000009946) #30	DSTN (ENSSHAG00000021432) #32	ENSSHAG00000022291 #33	ENSSHAG00000027906	ENSSHAG00000024157 #34	SNX5 (ENSSHAG00000018544) #35	MGME1 (ENSSHAG00000018526) #36	OVOL2 (ENSSHAG00000018466) #37	KAT14 (ENSSHAG00000018332)	DZANK1 (ENSSHAG00000018171)
Platypus	MODERN SPECIES	20	PLCB4 (ENSOANG00000008418)	LAMP5 (ENSOANG00000008419)	PAK5 (ENSOANG00000008420)	ANKEF1 (ENSOANG00000008421)	SNAP25 (ENSOANG00000042348)	MKKS (ENSOANG00000008423) #9	ENSOANG00000008424 #10	JAG1 (ENSOANG00000008425) #12	BTBD3 (ENSOANG00000046792) #14	SPTLC3 (ENSOANG00000008428) #16	ISM1 (ENSOANG00000042942) #17	TASP1 (ENSOANG00000008430) #18	ESF1 (ENSOANG00000008432) #19	NDUFAF5 (ENSOANG00000008433) #20	SEL1L2 (ENSOANG00000008435) #21	ENSOANG00000046730 #22	FLRT3 (ENSOANG00000029552) #23	ENSOANG00000031862	KIF16B (ENSOANG00000001236)	SNRPB2 (ENSOANG00000040662) #26	OTOR (ENSOANG00000043382) #27	PCSK2 (ENSOANG00000001239) #29	BFSP1 (ENSOANG00000037460) #30	DSTN (ENSOANG00000001246) #32	ENSOANG00000038933 #33	ENSOANG00000001247 #33	ENSOANG00000037227 #34	SNX5 (ENSOANG00000040202) #35	MGME1 (ENSOANG00000038109) #36	OVOL2 (ENSOANG00000001250) #37	PET117 (ENSOANG00000049166)
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00940000170045	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052
Lepidosauria	ANCESTRAL SPECIES	69									ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1907																ENSSPUG00000018808 #22
tuatara	MODERN SPECIES	1128									SPTLC3 (ENSSPUG00000012703) #16	ENSSPUG00000012679	TASP1 (ENSSPUG00000012660) #18	ESF1 (ENSSPUG00000012635) #19	NDUFAF5 (ENSSPUG00000012616) #20	SEL1L2 (ENSSPUG00000012575) #21	FLRT3 (ENSSPUG00000012563) #23	ENSSPUG00000012551 #22
Episquamata	ANCESTRAL SPECIES		ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148 #12	ENSGT00940000156246	ENSGT00940000164630	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Toxicofera	ANCESTRAL SPECIES		ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148 #12	ENSGT00940000156246	ENSGT00940000164630	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B.a #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Lizard	MODERN SPECIES		NHLRC3 (ENSACAG00000016533)	ENSACAG00000016543	COG6 (ENSACAG00000016560)	FOXO1 (ENSACAG00000016628)	MRPS31 (ENSACAG00000016639)	SLC25A15 (ENSACAG00000016648)	ENSACAG00000016678	ENSACAG00000016722	THSD1 (ENSACAG00000016751)	ENSACAG00000016762	CKAP2 (ENSACAG00000016806)	NEK3 (ENSACAG00000016818)	NEK5 (ENSACAG00000016821)	ALG11 (ENSACAG00000016829)	ATP7B (ENSACAG00000016831)	ENSACAG00000016892 #22	ENSACAG00000016901 #23	BTBD3 (ENSACAG00000001511) #14	ENSACAG00000042234	thap5 (ENSACAG00000038775)	DNAJB9 (ENSACAG00000038397)	ENSACAG00000022673	JAG1 (ENSACAG00000001567) #12	ENSACAG00000043189	MKKS (ENSACAG00000001885) #9	SNAP25 (ENSACAG00000001920)	ANKEF1 (ENSACAG00000001973)	PAK5 (ENSACAG00000002086)	LAMP5 (ENSACAG00000029533)	PLCB4 (ENSACAG00000002271)	ENSACAG00000034560
Elapidae	ANCESTRAL SPECIES		ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148 #12	ENSGT00940000156246	ENSGT00940000164630	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B.a #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405	ENSGT00940000156327
Indian cobra	MODERN SPECIES		ENSNNAG00000011256	ENSNNAG00000011261	ANKEF1 (ENSNNAG00000011274)	SNAP25 (ENSNNAG00000011304)	MKKS (ENSNNAG00000011359) #9	JAG1 (ENSNNAG00000011383) #12	DNAJB9 (ENSNNAG00000011462)	ENSNNAG00000011489	BTBD3 (ENSNNAG00000011513) #14	SPTLC3 (ENSNNAG00000011590) #16	ISM1 (ENSNNAG00000011807) #17	TASP1 (ENSNNAG00000011821) #18	ESF1 (ENSNNAG00000011923) #19	NDUFAF5 (ENSNNAG00000012005) #20	SEL1L2 (ENSNNAG00000012056) #21	ENSNNAG00000012226 #22	FLRT3 (ENSNNAG00000012260) #23	SNRPB2 (ENSNNAG00000012519) #26	PCSK2 (ENSNNAG00000012540) #29	BFSP1 (ENSNNAG00000012581) #30	ENSNNAG00000012694	ENSNNAG00000012745	FBXO48 (ENSNNAG00000012774)	PLEK (ENSNNAG00000012798)	CNRIP1 (ENSNNAG00000012863)	ENSNNAG00000012878	PPP3R1 (ENSNNAG00000012886)	PNO1 (ENSNNAG00000012918)	DNAAF10 (ENSNNAG00000012936)	C1D (ENSNNAG00000012988)	MEIS1 (ENSNNAG00000013019)
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148.c #12	ENSGT00940000156246	ENSGT00940000164630	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B.a #18	ENSGT00390000004881.q #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405	ENSGT00940000156327
Blue-lipped sea krait	MODERN SPECIES	10101																ENSLLTG00000013611 #22
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148.c #12	ENSGT00940000156246	ENSGT00940000164630	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B.a #18	ENSGT00390000004881.q #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405	ENSGT00940000156327
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	23	LAMP5 (ENSNSUG00000019207)	ENSNSUG00000019206	ENSNSUG00000019205	ANKEF1 (ENSNSUG00000019204)	SNAP25 (ENSNSUG00000019203)	MKKS (ENSNSUG00000019202) #9	ENSNSUG00000019201 #12	DNAJB9 (ENSNSUG00000019199)	ENSNSUG00000019198	BTBD3 (ENSNSUG00000019197) #14	SPTLC3 (ENSNSUG00000019196) #16	ISM1 (ENSNSUG00000019195) #17	TASP1 (ENSNSUG00000019194) #18	ESF1 (ENSNSUG00000019193) #19	NDUFAF5 (ENSNSUG00000019192) #20	ENSNSUG00000019191 #22	FLRT3 (ENSNSUG00000019190) #23	KIF16B (ENSNSUG00000019188)	SNRPB2 (ENSNSUG00000019187) #26	PCSK2 (ENSNSUG00000019186) #29	BFSP1 (ENSNSUG00000019185) #30	ENSNSUG00000019184	ENSNSUG00000019182	FBXO48 (ENSNSUG00000019181)	PLEK (ENSNSUG00000019180)	CNRIP1 (ENSNSUG00000019179)	PPP3R1 (ENSNSUG00000019177)	PNO1 (ENSNSUG00000019176)	DNAAF10 (ENSNSUG00000019175)	C1D (ENSNSUG00000019174)	MEIS1 (ENSNSUG00000019167)
Mainland tiger snake	MODERN SPECIES	163								ENSNSUG00000010839	ENSNSUG00000010838	ENSNSUG00000010835	RHCG (ENSNSUG00000010834)	POLG (ENSNSUG00000010830)	FANCI (ENSNSUG00000010827)	RLBP1 (ENSNSUG00000010826)	ABHD2 (ENSNSUG00000010824)	ENSNSUG00000010822 #22	MFGE8 (ENSNSUG00000010821)	HAPLN3 (ENSNSUG00000010818)	ENSNSUG00000010815	ISG20 (ENSNSUG00000010813)	ENSNSUG00000010811	DET1 (ENSNSUG00000010810)	MRPS11 (ENSNSUG00000010809)	MRPL46 (ENSNSUG00000010808)	NTRK3 (ENSNSUG00000010805)
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	43									KIF7 (ENSPTXG00000005530)	ENSPTXG00000005522	RHCG (ENSPTXG00000005519)	POLG (ENSPTXG00000005467)	FANCI (ENSPTXG00000005462)	RLBP1 (ENSPTXG00000005461)	ABHD2 (ENSPTXG00000005457)	ENSPTXG00000005454 #22	MFGE8 (ENSPTXG00000005452)	HAPLN3 (ENSPTXG00000005451)	ENSPTXG00000005387	ENSPTXG00000005384	DET1 (ENSPTXG00000005381)	MRPS11 (ENSPTXG00000005380)	MRPL46 (ENSPTXG00000005378)	NTRK3 (ENSPTXG00000005357)	AGBL1 (ENSPTXG00000005356)	KLHL25 (ENSPTXG00000005355)	AKAP13 (ENSPTXG00000005277)	PLEKHO2 (ENSPTXG00000005273)	PCSK6 (ENSPTXG00000005043)	SNRPA1 (ENSPTXG00000005038)	ENSPTXG00000005036
Eastern brown snake	MODERN SPECIES	56													ENSPTXG00000005879 #19	NDUFAF5 (ENSPTXG00000005878) #20	SEL1L2 (ENSPTXG00000005877) #21	ENSPTXG00000005876 #22	FLRT3 (ENSPTXG00000005875) #23	KIF16B (ENSPTXG00000005874)	SNRPB2 (ENSPTXG00000005873) #26	PCSK2 (ENSPTXG00000005804) #29	BFSP1 (ENSPTXG00000005802) #30	ENSPTXG00000005800	ENSPTXG00000005799	FBXO48 (ENSPTXG00000005797)	PLEK (ENSPTXG00000005794)	CNRIP1 (ENSPTXG00000005792)	PPP3R1 (ENSPTXG00000005790)	PNO1 (ENSPTXG00000005788)	DNAAF10 (ENSPTXG00000005787)	C1D (ENSPTXG00000005785)	MEIS1 (ENSPTXG00000005783)
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00940000160148 #12	ENSGT00940000156246	ENSGT00940000162392	ENSGT00940000164630	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b
Argentine black and white tegu	MODERN SPECIES	43	PAK5 (ENSSMRG00000022563)	ANKEF1 (ENSSMRG00000022560)	SNAP25 (ENSSMRG00000022558)	MKKS (ENSSMRG00000022555) #9	JAG1 (ENSSMRG00000022553) #12	DNAJB9 (ENSSMRG00000022548)	ENSSMRG00000022547	BTBD3 (ENSSMRG00000022546) #14	ENSSMRG00000022545	SPTLC3 (ENSSMRG00000022543) #16	ISM1 (ENSSMRG00000022542) #17	TASP1 (ENSSMRG00000022537) #18	ENSSMRG00000022535 #19	ENSSMRG00000022533 #19	NDUFAF5 (ENSSMRG00000022532) #20	ENSSMRG00000022531 #22	FLRT3 (ENSSMRG00000022530) #23	ENSSMRG00000022529	ENSSMRG00000022526 #24	SNRPB2 (ENSSMRG00000022525) #26	OTOR (ENSSMRG00000022524) #27
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000001533	SNAP25 (ENSPMRG00000001539)	MKKS (ENSPMRG00000001551) #9	JAG1 (ENSPMRG00000001642) #12	DNAJB9 (ENSPMRG00000001957)	THAP5 (ENSPMRG00000001966)	ENSPMRG00000001973	BTBD3 (ENSPMRG00000001980) #14	ENSPMRG00000001988	SPTLC3 (ENSPMRG00000001998) #16	ISM1 (ENSPMRG00000002021) #17	TASP1 (ENSPMRG00000002039) #18	ESF1 (ENSPMRG00000002058) #19	NDUFAF5 (ENSPMRG00000002068) #20	SEL1L2 (ENSPMRG00000002085) #21	ENSPMRG00000002121 #22	FLRT3 (ENSPMRG00000002123) #23	KIF16B (ENSPMRG00000002144)	SNRPB2 (ENSPMRG00000002233) #26	OTOR (ENSPMRG00000002241) #27	PCSK2 (ENSPMRG00000002244) #29	BFSP1 (ENSPMRG00000002249) #30	ENSPMRG00000002256	ENSPMRG00000002259	ENSPMRG00000002261	VSNL1 (ENSPMRG00000002266)	SMC6 (ENSPMRG00000002270)	GEN1 (ENSPMRG00000002288)	KCNS3 (ENSPMRG00000002300)	WDR35 (ENSPMRG00000002308)	RDH14 (ENSPMRG00000002345)
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00940000170045	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052
Archosauria	ANCESTRAL SPECIES	29	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052
Aves	ANCESTRAL SPECIES	35	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052
African ostrich	MODERN SPECIES	570														ENSSCUG00000011059	FLRT3 (ENSSCUG00000011061) #23	MACROD2 (ENSSCUG00000011065) #22	ENSSCUG00000011080 #24	SNRPB2 (ENSSCUG00000011093) #26	OTOR (ENSSCUG00000011095) #27	PCSK2 (ENSSCUG00000011104) #29	BFSP1 (ENSSCUG00000011117) #30	ENSSCUG00000011118	CCDC85A (ENSSCUG00000011119)	VRK2 (ENSSCUG00000011123)	FANCL (ENSSCUG00000011125)	ENSSCUG00000011144	PAPOLG (ENSSCUG00000011148)	REL (ENSSCUG00000011150)	ENSSCUG00000011153	ENSSCUG00000011155	PEX13 (ENSSCUG00000011156)
Neognathae	ANCESTRAL SPECIES	32	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT01040000241398.a	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c
Galloanserae	ANCESTRAL SPECIES	29	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT01040000241398.a	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c
Anatidae	ANCESTRAL SPECIES	45	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544
Pink-footed goose	MODERN SPECIES	85	LAMP5 (ENSABRG00000002361)	PAK5 (ENSABRG00000002379)	ENSABRG00000002450	ANKEF1 (ENSABRG00000002538)	ENSABRG00000002620	SNAP25 (ENSABRG00000002627)	MKKS (ENSABRG00000002644) #9	SLX4IP (ENSABRG00000002670) #10	JAG1 (ENSABRG00000002698) #12	BTBD3 (ENSABRG00000002829) #14	SPTLC3 (ENSABRG00000002928) #16	ISM1 (ENSABRG00000002951) #17	TASP1 (ENSABRG00000002961) #18	ESF1 (ENSABRG00000002993) #19	NDUFAF5 (ENSABRG00000003006) #20	ENSABRG00000003035 #22	FLRT3 (ENSABRG00000003057) #23	ENSABRG00000003099	KIF16B (ENSABRG00000003161)	SNRPB2 (ENSABRG00000003318) #26	OTOR (ENSABRG00000003352) #27	PCSK2 (ENSABRG00000003371) #29	BFSP1 (ENSABRG00000003401) #30	ENSABRG00000003459
Duck	MODERN SPECIES	21				ENSAPLG00000008530	ANKEF1 (ENSAPLG00000008532)	SNAP25 (ENSAPLG00000008826)	MKKS (ENSAPLG00000009014) #9	SLX4IP (ENSAPLG00000009267) #10	JAG1 (ENSAPLG00000009296) #12	BTBD3 (ENSAPLG00000010945) #14	SPTLC3 (ENSAPLG00000011146) #16	ISM1 (ENSAPLG00000011456) #17	TASP1 (ENSAPLG00000011487) #18	ESF1 (ENSAPLG00000012113) #19	NDUFAF5 (ENSAPLG00000012410) #20	ENSAPLG00000012416 #22	FLRT3 (ENSAPLG00000012417) #23	ENSAPLG00000012517	ENSAPLG00000012639 #24	ENSAPLG00000030393	SNRPB2 (ENSAPLG00000012904) #26	OTOR (ENSAPLG00000012952) #27	BFSP1 (ENSAPLG00000015558) #30	PCSK2 (ENSAPLG00000014969) #29	ENSAPLG00000014957	ENSAPLG00000001355	ENSAPLG00000014601	ENSAPLG00000017662	LAMP5 (ENSAPLG00000014591)	PLCB4 (ENSAPLG00000013577)	PLCB1 (ENSAPLG00000012885)
Phasianidae	ANCESTRAL SPECIES	29	ENSGT01030000234620.a.a.a.b	ENSGT00390000016927	ENSGT00940000157952	ENSGT00530000064165.b	ENSGT00390000003866.a.a	ENSGT00950000183209.b.a.a	ENSGT00940000153954.d	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000165109	ENSGT00940000157908	ENSGT00400000022158	ENSGT00950000183114.a.a	ENSGT00390000004881 #19	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT01040000241398.a	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Phasianidae_b	ANCESTRAL SPECIES	28	ENSGT01030000234620.a.a.a.b	ENSGT00390000016927	ENSGT00940000157952	ENSGT00530000064165.b	ENSGT00390000003866.a.a	ENSGT00950000183209.b.a.a	ENSGT00940000153954.d	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000165109	ENSGT00940000157908	ENSGT00400000022158	ENSGT00950000183114.a.a	ENSGT00390000004881 #19	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT01040000241398.a	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Chicken	DUPLICATION
Chicken	MODERN SPECIES	22	PPP2R5D (ENSGALG00010018428)	MEA1 (ENSGALG00010018440)	KLHDC3 (ENSGALG00010018448)	ENSGALG00010018476	ENSGALG00010018492	ENSGALG00010018509	ENSGALG00010018520	MRPL2 (ENSGALG00010018556)	ENSGALG00010018560	ENSGALG00010018566	PTK7 (ENSGALG00010018576)	SRF (ENSGALG00010018587)	ENSGALG00010018598	XDH (ENSGALG00010018628)	ESF1 (ENSGALG00010018644) #19	ENSGALG00010018693 #22	FLRT3 (ENSGALG00010018747) #23	ENSGALG00010020009 #22	ENSGALG00010018857 #24	SNRPB2 (ENSGALG00010019263) #26	CTAGE1 (ENSGALG00010019275) #27	NRXN1 (ENSGALG00010017272)	ENSGALG00010017295	FSHR (ENSGALG00010019997)	LHCGR (ENSGALG00010017301)	GTF2A1L (ENSGALG00010017311)	STON1 (ENSGALG00010017326)	ENSGALG00010017350	EHD3 (ENSGALG00010017359)	CAPN14 (ENSGALG00010017369)	GALNT14 (ENSGALG00010017376)
Chicken	MODERN SPECIES	22	KLHDC3 (ENSGALG00010018448)	ENSGALG00010018476	ENSGALG00010018492	ENSGALG00010018509	ENSGALG00010018520	MRPL2 (ENSGALG00010018556)	ENSGALG00010018560	ENSGALG00010018566	PTK7 (ENSGALG00010018576)	SRF (ENSGALG00010018587)	ENSGALG00010018598	XDH (ENSGALG00010018628)	ESF1 (ENSGALG00010018644) #19	ENSGALG00010018693 #22	FLRT3 (ENSGALG00010018747) #23	ENSGALG00010020009 #22	ENSGALG00010018857 #24	SNRPB2 (ENSGALG00010019263) #26	CTAGE1 (ENSGALG00010019275) #27	NRXN1 (ENSGALG00010017272)	ENSGALG00010017295	FSHR (ENSGALG00010019997)	LHCGR (ENSGALG00010017301)	GTF2A1L (ENSGALG00010017311)	STON1 (ENSGALG00010017326)	ENSGALG00010017350	EHD3 (ENSGALG00010017359)	CAPN14 (ENSGALG00010017369)	GALNT14 (ENSGALG00010017376)	CAPN13 (ENSGALG00010017447)	LBH (ENSGALG00010017485)
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES	21	ABHD12 (ENSCJPG00005015587)	MEA1 (ENSCJPG00005015586)	PPP2R5D (ENSCJPG00005015454)	ENSCJPG00005015450	KLHDC3 (ENSCJPG00005015449)	ENSCJPG00005015448	ENSCJPG00005015447	ENSCJPG00005015443	MRPL2 (ENSCJPG00005015441)	ENSCJPG00005015284	ENSCJPG00005015277	PTK7 (ENSCJPG00005015274)	SRF (ENSCJPG00005015271)	XDH (ENSCJPG00005011886)	ESF1 (ENSCJPG00005011869) #19	ENSCJPG00005011862 #22	FLRT3 (ENSCJPG00005011861) #23	ENSCJPG00005011850 #22	ENSCJPG00005011809 #24	SNRPB2 (ENSCJPG00005011807) #26	OTOR (ENSCJPG00005011805) #27	TMEM17 (ENSCJPG00005011798)	EHBP1 (ENSCJPG00005011795)	OTX1 (ENSCJPG00005011794)	WDPCP (ENSCJPG00005011776)	MDH1 (ENSCJPG00005011775)	UGP2 (ENSCJPG00005011774)	VPS54 (ENSCJPG00005011596)	PELI1 (ENSCJPG00005011590)	ENSCJPG00005011569	ENSCJPG00005011568
Japanese quail	MODERN SPECIES	21	PPP2R5D (ENSCJPG00005015454)	ENSCJPG00005015450	KLHDC3 (ENSCJPG00005015449)	ENSCJPG00005015448	ENSCJPG00005015447	ENSCJPG00005015443	MRPL2 (ENSCJPG00005015441)	ENSCJPG00005015284	ENSCJPG00005015277	PTK7 (ENSCJPG00005015274)	SRF (ENSCJPG00005015271)	XDH (ENSCJPG00005011886)	ESF1 (ENSCJPG00005011869) #19	ENSCJPG00005011862 #22	FLRT3 (ENSCJPG00005011861) #23	ENSCJPG00005011850 #22	ENSCJPG00005011809 #24	SNRPB2 (ENSCJPG00005011807) #26	OTOR (ENSCJPG00005011805) #27	TMEM17 (ENSCJPG00005011798)	EHBP1 (ENSCJPG00005011795)	OTX1 (ENSCJPG00005011794)	WDPCP (ENSCJPG00005011776)	MDH1 (ENSCJPG00005011775)	UGP2 (ENSCJPG00005011774)	VPS54 (ENSCJPG00005011596)	PELI1 (ENSCJPG00005011590)	ENSCJPG00005011569	ENSCJPG00005011568	ENSCJPG00005011566	AFTPH (ENSCJPG00005011562)
Neognathae_b	ANCESTRAL SPECIES	32	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052
Neognathae_c	ANCESTRAL SPECIES	35	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052
Golden eagle	MODERN SPECIES	24	PAK5 (ENSACCG00020007169)	ENSACCG00020007151	ANKEF1 (ENSACCG00020007125)	SNAP25 (ENSACCG00020007103)	MKKS (ENSACCG00020007082) #9	ENSACCG00020007070	ENSACCG00020007055	SLX4IP (ENSACCG00020007039) #10	JAG1 (ENSACCG00020006840) #12	BTBD3 (ENSACCG00020006627) #14	SPTLC3 (ENSACCG00020006590) #16	ISM1 (ENSACCG00020006569) #17	TASP1 (ENSACCG00020006539) #18	ESF1 (ENSACCG00020006518) #19	NDUFAF5 (ENSACCG00020006499) #20	ENSACCG00020006494 #22	FLRT3 (ENSACCG00020006489) #23	ENSACCG00020006473	KIF16B (ENSACCG00020006377)	SNRPB2 (ENSACCG00020006344) #26	OTOR (ENSACCG00020006336) #27	PCSK2 (ENSACCG00020006307) #29	BFSP1 (ENSACCG00020006284) #30	ENSACCG00020006272	APLF (ENSACCG00020006257)	FBXO48 (ENSACCG00020006254)	PLEK (ENSACCG00020006245)	CNRIP1 (ENSACCG00020006234)	PPP3R1 (ENSACCG00020006223)	PNO1 (ENSACCG00020006212)	DNAAF10 (ENSACCG00020006200)
Passeriformes	ANCESTRAL SPECIES	31	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908	ENSGT00940000156852	ENSGT00940000154857.i.a	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000162977 #24	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00390000018199.b.c.b	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c
Great tit	MODERN SPECIES	22	LAMP5 (ENSPMJG00000000667)	PAK5 (ENSPMJG00000000677)	ENSPMJG00000000701	ANKEF1 (ENSPMJG00000000704)	ENSPMJG00000000712	SNAP25 (ENSPMJG00000000814)	MKKS (ENSPMJG00000000818) #9	SLX4IP (ENSPMJG00000000828) #10	JAG1 (ENSPMJG00000000837) #12	BTBD3 (ENSPMJG00000000926) #14	SPTLC3 (ENSPMJG00000001025) #16	ISM1 (ENSPMJG00000001043) #17	TASP1 (ENSPMJG00000001234) #18	ESF1 (ENSPMJG00000001267) #19	NDUFAF5 (ENSPMJG00000001281) #20	ENSPMJG00000001313 #22	FLRT3 (ENSPMJG00000001325) #23	ENSPMJG00000001339	ENSPMJG00000001425 #24	SNRPB2 (ENSPMJG00000001585) #26	OTOR (ENSPMJG00000001589) #27	PCSK2 (ENSPMJG00000001625) #29	BFSP1 (ENSPMJG00000001637) #30	ENSPMJG00000001644	APLF (ENSPMJG00000001658)	ENSPMJG00000001662	FBXO48 (ENSPMJG00000001663)	PLEK (ENSPMJG00000001665)	CNRIP1 (ENSPMJG00000001670)	PPP3R1 (ENSPMJG00000001689)	PNO1 (ENSPMJG00000001695)
Passeriformes_d	ANCESTRAL SPECIES	32	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908	ENSGT00940000156852	ENSGT00940000154857.i.a	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00390000018199.b.c.b.a	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Passeriformes_g	ANCESTRAL SPECIES	42										ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00390000018199.b.c.b.a	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Medium ground finch	MODERN SPECIES	172										BTBD3 (ENSGFOG00000014721) #14	SPTLC3 (ENSGFOG00000001881) #16	ISM1 (ENSGFOG00000001930) #17	TASP1 (ENSGFOG00000001942) #18	ESF1 (ENSGFOG00000001958) #19	NDUFAF5 (ENSGFOG00000001974) #20	ENSGFOG00000002051 #22	ENSGFOG00000002060 #23
Passeroidea	ANCESTRAL SPECIES	41										ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000170045	ENSGT00940000162838	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00390000018199.b.c.b.a	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Common canary	MODERN SPECIES	23	PAX1 (ENSSCAG00000014782)	XRN2 (ENSSCAG00000014793)	ENSSCAG00000014807	RALGAPA2 (ENSSCAG00000014824)	CFAP61 (ENSSCAG00000014845)	CRNKL1 (ENSSCAG00000014865)	SLC24A3 (ENSSCAG00000014909)	RIN2 (ENSSCAG00000014970)	BTBD3 (ENSSCAG00000014984) #14	ENSSCAG00000014990	SPTLC3 (ENSSCAG00000014993) #16	ISM1 (ENSSCAG00000015000) #17	TASP1 (ENSSCAG00000015009) #18	ESF1 (ENSSCAG00000015014) #19	NDUFAF5 (ENSSCAG00000015020) #20	ENSSCAG00000015029 #22	FLRT3 (ENSSCAG00000015035) #23	ENSSCAG00000015043	KIF16B (ENSSCAG00000015062)	CAPN2 (ENSSCAG00000015110)	TP53BP2 (ENSSCAG00000015158)	FBXO28 (ENSSCAG00000015167)	DEGS1 (ENSSCAG00000015175)	NVL (ENSSCAG00000015178)	CNIH4 (ENSSCAG00000015185)	ENSSCAG00000015189	WDR26 (ENSSCAG00000015199)	CNIH3 (ENSSCAG00000015221)	LBR (ENSSCAG00000015229)	ENAH (ENSSCAG00000015236)	SRP9 (ENSSCAG00000015245)
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	23	RBKS (ENSTGUG00000020327)	MRPL33 (ENSTGUG00000002538)	ENSTGUG00000022344	SLC4A1AP (ENSTGUG00000002524)	SUPT7L (ENSTGUG00000002523)	LRFN2 (ENSTGUG00000023274)	MOCS1 (ENSTGUG00000002508)	DAAM2 (ENSTGUG00000002495)	KIF6 (ENSTGUG00000002485)	BTBD3 (ENSTGUG00000025475) #14	SPTLC3 (ENSTGUG00000002471) #16	ISM1 (ENSTGUG00000002469) #17	TASP1 (ENSTGUG00000002456) #18	ESF1 (ENSTGUG00000002450) #19	NDUFAF5 (ENSTGUG00000002444) #20	ENSTGUG00000026464 #22	FLRT3 (ENSTGUG00000023686) #23	ENSTGUG00000022278 #22	ENSTGUG00000002422 #24	ENSTGUG00000020896 #26	ENSTGUG00000023714	ENSTGUG00000028808	PCSK2 (ENSTGUG00000002403) #29	BFSP1 (ENSTGUG00000002401) #30	ENSTGUG00000002397	ENSTGUG00000028491	APLF (ENSTGUG00000028592)	FBXO48 (ENSTGUG00000026746)	PLEK (ENSTGUG00000002380)	CNRIP1 (ENSTGUG00000021224)	PPP3R1 (ENSTGUG00000018231)
Zebra finch	MODERN SPECIES	23	ENSTGUG00000022344	SLC4A1AP (ENSTGUG00000002524)	SUPT7L (ENSTGUG00000002523)	LRFN2 (ENSTGUG00000023274)	MOCS1 (ENSTGUG00000002508)	DAAM2 (ENSTGUG00000002495)	KIF6 (ENSTGUG00000002485)	BTBD3 (ENSTGUG00000025475) #14	SPTLC3 (ENSTGUG00000002471) #16	ISM1 (ENSTGUG00000002469) #17	TASP1 (ENSTGUG00000002456) #18	ESF1 (ENSTGUG00000002450) #19	NDUFAF5 (ENSTGUG00000002444) #20	ENSTGUG00000026464 #22	FLRT3 (ENSTGUG00000023686) #23	ENSTGUG00000022278 #22	ENSTGUG00000002422 #24	ENSTGUG00000020896 #26	ENSTGUG00000023714	ENSTGUG00000028808	PCSK2 (ENSTGUG00000002403) #29	BFSP1 (ENSTGUG00000002401) #30	ENSTGUG00000002397	ENSTGUG00000028491	APLF (ENSTGUG00000028592)	FBXO48 (ENSTGUG00000026746)	PLEK (ENSTGUG00000002380)	CNRIP1 (ENSTGUG00000021224)	PPP3R1 (ENSTGUG00000018231)	PNO1 (ENSTGUG00000002369)	DNAAF10 (ENSTGUG00000018213)
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	21	PLCB4 (ENSFALG00000011105)	LAMP5 (ENSFALG00000011091)	PAK5 (ENSFALG00000011074)	ENSFALG00000024936	ANKEF1 (ENSFALG00000011067)	SNAP25 (ENSFALG00000011049)	MKKS (ENSFALG00000011040) #9	SLX4IP (ENSFALG00000011038) #10	JAG1 (ENSFALG00000010980) #12	BTBD3 (ENSFALG00000010947) #14	SPTLC3 (ENSFALG00000010942) #16	ISM1 (ENSFALG00000010932) #17	TASP1 (ENSFALG00000024889) #18	ESF1 (ENSFALG00000010914) #19	NDUFAF5 (ENSFALG00000010903) #20	ENSFALG00000024417 #22	FLRT3 (ENSFALG00000015336) #23	ENSFALG00000025250 #22	ENSFALG00000010872 #24	ENSFALG00000000892	SRF (ENSFALG00000000878)	PTK7 (ENSFALG00000000861)	ENSFALG00000023186	ENSFALG00000000847	MRPL2 (ENSFALG00000000843)	ENSFALG00000000821	ENSFALG00000000809	ENSFALG00000024240	ENSFALG00000028939	KLHDC3 (ENSFALG00000022945)	ABHD12 (ENSFALG00000000792)
Flycatcher	MODERN SPECIES	21	PAK5 (ENSFALG00000011074)	ENSFALG00000024936	ANKEF1 (ENSFALG00000011067)	SNAP25 (ENSFALG00000011049)	MKKS (ENSFALG00000011040) #9	SLX4IP (ENSFALG00000011038) #10	JAG1 (ENSFALG00000010980) #12	BTBD3 (ENSFALG00000010947) #14	SPTLC3 (ENSFALG00000010942) #16	ISM1 (ENSFALG00000010932) #17	TASP1 (ENSFALG00000024889) #18	ESF1 (ENSFALG00000010914) #19	NDUFAF5 (ENSFALG00000010903) #20	ENSFALG00000024417 #22	FLRT3 (ENSFALG00000015336) #23	ENSFALG00000025250 #22	ENSFALG00000010872 #24	ENSFALG00000000892	SRF (ENSFALG00000000878)	PTK7 (ENSFALG00000000861)	ENSFALG00000023186	ENSFALG00000000847	MRPL2 (ENSFALG00000000843)	ENSFALG00000000821	ENSFALG00000000809	ENSFALG00000024240	ENSFALG00000028939	KLHDC3 (ENSFALG00000022945)	ABHD12 (ENSFALG00000000792)	PPP2R5D (ENSFALG00000000797)	PYGB (ENSFALG00000000756)
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	60	SNAP25 (ENSCPRG00005012126)	MKKS (ENSCPRG00005012132) #9	ENSCPRG00005012134	ENSCPRG00005012137	SLX4IP (ENSCPRG00005012145) #10	JAG1 (ENSCPRG00005012155) #12	ENSCPRG00005012198	BTBD3 (ENSCPRG00005012231) #14	SPTLC3 (ENSCPRG00005012240) #16	ISM1 (ENSCPRG00005012251) #17	TASP1 (ENSCPRG00005012266) #18	ENSCPRG00005012274 #19	ENSCPRG00005012299 #19	NDUFAF5 (ENSCPRG00005012315) #20	SEL1L2 (ENSCPRG00005012330) #21	ENSCPRG00005012379 #22	FLRT3 (ENSCPRG00005012390) #23	ENSCPRG00005012460 #22	KIF16B (ENSCPRG00005012529)	SNRPB2 (ENSCPRG00005012601) #26	OTOR (ENSCPRG00005012606) #27	PCSK2 (ENSCPRG00005012678) #29	BFSP1 (ENSCPRG00005012685) #30	ENSCPRG00005012710	APLF (ENSCPRG00005012739)	FBXO48 (ENSCPRG00005012746)	PLEK (ENSCPRG00005012755)	CNRIP1 (ENSCPRG00005012769)	PPP3R1 (ENSCPRG00005012773)	PNO1 (ENSCPRG00005012776)	DNAAF10 (ENSCPRG00005012802)
Australian saltwater crocodile	MODERN SPECIES	60	ENSCPRG00005012134	ENSCPRG00005012137	SLX4IP (ENSCPRG00005012145) #10	JAG1 (ENSCPRG00005012155) #12	ENSCPRG00005012198	BTBD3 (ENSCPRG00005012231) #14	SPTLC3 (ENSCPRG00005012240) #16	ISM1 (ENSCPRG00005012251) #17	TASP1 (ENSCPRG00005012266) #18	ENSCPRG00005012274 #19	ENSCPRG00005012299 #19	NDUFAF5 (ENSCPRG00005012315) #20	SEL1L2 (ENSCPRG00005012330) #21	ENSCPRG00005012379 #22	FLRT3 (ENSCPRG00005012390) #23	ENSCPRG00005012460 #22	KIF16B (ENSCPRG00005012529)	SNRPB2 (ENSCPRG00005012601) #26	OTOR (ENSCPRG00005012606) #27	PCSK2 (ENSCPRG00005012678) #29	BFSP1 (ENSCPRG00005012685) #30	ENSCPRG00005012710	APLF (ENSCPRG00005012739)	FBXO48 (ENSCPRG00005012746)	PLEK (ENSCPRG00005012755)	CNRIP1 (ENSCPRG00005012769)	PPP3R1 (ENSCPRG00005012773)	PNO1 (ENSCPRG00005012776)	DNAAF10 (ENSCPRG00005012802)	C1D (ENSCPRG00005012813)	ENSCPRG00005012839
Cryptodira	ANCESTRAL SPECIES	56	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162977 #24
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00960000192974	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337	ENSGT00940000154186.a	ENSGT00390000001858
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00960000192974	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337	ENSGT00940000154186.a.c	ENSGT00390000001858
Goode s thornscrub tortoise	MODERN SPECIES	17	SNAP25 (ENSGEVG00005011386)	MKKS (ENSGEVG00005011357) #9	SLX4IP (ENSGEVG00005011307) #10	JAG1 (ENSGEVG00005011086) #12	BTBD3 (ENSGEVG00005010998) #14	ENSGEVG00005010972	ENSGEVG00005010934	SPTLC3 (ENSGEVG00005010827) #16	ISM1 (ENSGEVG00005010755) #17	TASP1 (ENSGEVG00005010643) #18	ENSGEVG00005010560 #19	ENSGEVG00005010522 #19	NDUFAF5 (ENSGEVG00005010165) #20	SEL1L2 (ENSGEVG00005009876) #21	FLRT3 (ENSGEVG00005009842) #23	ENSGEVG00005009818 #22	ENSGEVG00005009613 #24	COMMD1 (ENSGEVG00005009544)	B3GNT2 (ENSGEVG00005009523)	TMEM17 (ENSGEVG00005009491)	EHBP1 (ENSGEVG00005009124)	OTX1 (ENSGEVG00005009002)	ENSGEVG00005008975	MDH1 (ENSGEVG00005004454)	UGP2 (ENSGEVG00005004320)	VPS54 (ENSGEVG00005004270)	PELI1 (ENSGEVG00005004247)	LGALSL (ENSGEVG00005004215)	ENSGEVG00005004188	ENSGEVG00005004165	ENSGEVG00005004141
Abingdon island giant tortoise	MODERN SPECIES	1443					ENSCABG00000005423	ENSCABG00000005425	ENSCABG00000005427	SPTLC3 (ENSCABG00000005429) #16	ISM1 (ENSCABG00000005434) #17	TASP1 (ENSCABG00000005439) #18	ENSCABG00000005549 #19	ENSCABG00000005550 #19	ENSCABG00000005554 #19	NDUFAF5 (ENSCABG00000005566) #20	SEL1L2 (ENSCABG00000005739) #21	ENSCABG00000005776 #22	FLRT3 (ENSCABG00000005777) #23
Emydidae	ANCESTRAL SPECIES	41	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00950000184667	ENSGT00990000204385	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00390000008610.a.a.j.a	ENSGT00960000192974	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162977 #24	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337	ENSGT00940000154186.a	ENSGT00390000001858
painted turtle	MODERN SPECIES	12	ENSCPBG00000023334	ENSCPBG00000023331	SLX4IP (ENSCPBG00000023328) #10	JAG1 (ENSCPBG00000023326) #12	BTBD3 (ENSCPBG00000023320) #14	ENSCPBG00000023316	ENSCPBG00000023313 #16	ENSCPBG00000023311 #16	ISM1 (ENSCPBG00000023309) #17	TASP1 (ENSCPBG00000023305) #18	ENSCPBG00000023302 #19	ENSCPBG00000023301 #19	ENSCPBG00000023300 #19	NDUFAF5 (ENSCPBG00000023288) #20	SEL1L2 (ENSCPBG00000023287) #21	ENSCPBG00000023285 #22	FLRT3 (ENSCPBG00000023283) #23	ENSCPBG00000023271 #24
Three-toed box turtle	MODERN SPECIES	62	MKKS (ENSTMTG00000011017) #9	ENSTMTG00000011039	SLX4IP (ENSTMTG00000011053) #10	JAG1 (ENSTMTG00000011091) #12	BTBD3 (ENSTMTG00000011163) #14	ENSTMTG00000011173	ENSTMTG00000011181	SPTLC3 (ENSTMTG00000011203) #16	ENSTMTG00000011271	TASP1 (ENSTMTG00000011283) #18	ENSTMTG00000011318 #19	ENSTMTG00000011328 #19	ENSTMTG00000011336 #19	NDUFAF5 (ENSTMTG00000011360) #20	SEL1L2 (ENSTMTG00000011547) #21	ENSTMTG00000011585 #22	FLRT3 (ENSTMTG00000011594) #23	ENSTMTG00000011617 #24	COMMD1 (ENSTMTG00000011699)	B3GNT2 (ENSTMTG00000011706)	TMEM17 (ENSTMTG00000011710)	EHBP1 (ENSTMTG00000011723)	OTX1 (ENSTMTG00000011768)	ENSTMTG00000011785	ENSTMTG00000011798	MDH1 (ENSTMTG00000011807)	UGP2 (ENSTMTG00000011829)	VPS54 (ENSTMTG00000011848)	PELI1 (ENSTMTG00000011887)	LGALSL (ENSTMTG00000011905)	AFTPH (ENSTMTG00000011932)
Chinese turtle	MODERN SPECIES	424						ENSPSIG00000017620 #16	ENSPSIG00000017617	ISM1 (ENSPSIG00000017612) #17	TASP1 (ENSPSIG00000017144) #18	ENSPSIG00000017141 #19	ENSPSIG00000016731 #19	NDUFAF5 (ENSPSIG00000016473) #20	SEL1L2 (ENSPSIG00000013896) #21	FLRT3 (ENSPSIG00000001080) #23	ENSPSIG00000001074	ENSPSIG00000013684 #22
Anura	ANCESTRAL SPECIES	16	ENSGT00940000156426	ENSGT00940000163025.b	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000176188	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b
Frog	MODERN SPECIES	5	snap25 (ENSXETG00000015096)	mkks (ENSXETG00000032529) #9	slx4ip (ENSXETG00000030968) #10	jag1 (ENSXETG00000002340) #12	ENSXETG00000038409	btbd3 (ENSXETG00000044303) #14	ENSXETG00000046267	sptlc3 (ENSXETG00000008083) #16	ENSXETG00000035204	ENSXETG00000040440	ncoa1 (ENSXETG00000008081) #17	tasp1 (ENSXETG00000008080) #18	esf1 (ENSXETG00000008079) #19	ndufaf5 (ENSXETG00000008078) #20	ENSXETG00000045737	macrod2 (ENSXETG00000034883) #22	flrt3 (ENSXETG00000008706) #23	ENSXETG00000048798	kif16b (ENSXETG00000003551) #24	snrpb2 (ENSXETG00000003550) #26	otor (ENSXETG00000003548) #27	pcsk2 (ENSXETG00000003545) #29	bfsp1 (ENSXETG00000003544) #30	ENSXETG00000017361	aplf (ENSXETG00000025938)	fbxo48 (ENSXETG00000037084)	plek (ENSXETG00000017358)	cnrip1 (ENSXETG00000035745)	ppp3r1 (ENSXETG00000017355)	pno1 (ENSXETG00000017349)	dnaaf10 (ENSXETG00000046703)
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000019926	ENSLLEG00000019991	NVL (ENSLLEG00000020025)	FBXO28 (ENSLLEG00000020481)	TP53BP2 (ENSLLEG00000020879)	CAPN2 (ENSLLEG00000021003)	CAPN8 (ENSLLEG00000021455)	ENSLLEG00000021715	ENSLLEG00000023310	ENSLLEG00000004987	ENSLLEG00000005009	ENSLLEG00000005019	ENSLLEG00000005047	ENSLLEG00000005085	ENSLLEG00000005091	ENSLLEG00000005109 #22	FLRT3 (ENSLLEG00000005132) #23	ENSLLEG00000005144	ENSLLEG00000005150	ENSLLEG00000005159	KIF16B (ENSLLEG00000005254)	SNRPB2 (ENSLLEG00000006146) #26	OTOR (ENSLLEG00000006223) #27	ENSLLEG00000006248	ENSLLEG00000006259	ENSLLEG00000006269	PCSK2 (ENSLLEG00000006368) #29	BFSP1 (ENSLLEG00000007208) #30	ENSLLEG00000007250	ENSLLEG00000007298	APLF (ENSLLEG00000007325)
Coelacanth	MODERN SPECIES	456							JAG1 (ENSLACG00000001168) #12	BTBD3 (ENSLACG00000012602) #14	ENSLACG00000013756	SPTLC3 (ENSLACG00000014547) #16	ISM1 (ENSLACG00000015199) #17	TASP1 (ENSLACG00000015667) #18	ESF1 (ENSLACG00000016439) #19	NDUFAF5 (ENSLACG00000016605) #20	SEL1L2 (ENSLACG00000016649) #21	ENSLACG00000016841 #22
Actinopterygii	ANCESTRAL SPECIES	19	ENSGT00940000156258	ENSGT00390000008808	ENSGT00940000157923	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c.`b.b	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00660000097267	ENSGT00390000015405
Neopterygii	ANCESTRAL SPECIES	3	ENSGT00940000156258	ENSGT00390000008808	ENSGT00940000157923	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000160148 #12	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000161298 #21	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838	ENSGT00390000007046.b.a.a #26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000166657	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c.`b.b	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405
Spotted gar	MODERN SPECIES	654	dpy30 (ENSLOCG00000015945)	psen2 (ENSLOCG00000015948)	memo1 (ENSLOCG00000015951)	srd5a2b (ENSLOCG00000015953)	mkks (ENSLOCG00000015954) #9	SLX4IP (ENSLOCG00000015956) #10	JAG1 (ENSLOCG00000015958) #12	ENSLOCG00000015966	BTBD3 (ENSLOCG00000015968) #14	sptlc3 (ENSLOCG00000015971) #16	ism1 (ENSLOCG00000015977) #17	tasp1 (ENSLOCG00000015978) #18	esf1 (ENSLOCG00000015979) #19	ndufaf5 (ENSLOCG00000015981) #20	SEL1L2 (ENSLOCG00000015982) #21	macrod2 (ENSLOCG00000015985) #22	flrt3 (ENSLOCG00000017360) #23	KIF16B (ENSLOCG00000015987)	SNRPB2 (ENSLOCG00000015992) #26	OTOR (ENSLOCG00000015995) #27	pcsk2 (ENSLOCG00000015998) #29	BFSP1 (ENSLOCG00000016001) #30	prokr1b (ENSLOCG00000016003)	APLF (ENSLOCG00000016006)	fbxo48 (ENSLOCG00000016009)	plek (ENSLOCG00000016011)	cnrip1a (ENSLOCG00000016014)	ppp3r1a (ENSLOCG00000016015)	pno1 (ENSLOCG00000016017)	dnaaf10 (ENSLOCG00000016020)	ENSLOCG00000016022
Osteoglossocephalai	ANCESTRAL SPECIES	39	ENSGT00940000157923	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000008808.r.b	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000176188	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965 #29	ENSGT00390000016976 #30	ENSGT00940000166657	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c.`b.b	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405	ENSGT00390000009597
Osteoglossiformes	ANCESTRAL SPECIES	128	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000008808.r.b	ENSGT00940000157923	ENSGT00390000006408.xb	ENSGT00950000182886.b.a.c	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212.w	ENSGT00940000156461.e #14	ENSGT00940000158513 #16	ENSGT00940000159062.a #17	ENSGT00950000183045.B #18	ENSGT00390000004881 #19	ENSGT00390000014687 #20	ENSGT00940000157404 #22	ENSGT00940000159704.e #23	ENSGT00940000162838.g.a	ENSGT00390000007046.b.b.a ##26	ENSGT00950000182767.b.a.b.b.a #27	ENSGT00940000156965.a #29	ENSGT00390000016976.a #30	ENSGT00940000166657	ENSGT00940000157885.i	ENSGT00390000004284	ENSGT00950000183091.A.b	ENSGT00390000015405	ENSGT00940000156327.k	ENSGT00940000156841.a.a	ENSGT00940000154556.f
P. kingsleyae	MODERN SPECIES	53	VIT (ENSPKIG00000024171)	SPAST (ENSPKIG00000024207)	DPY30 (ENSPKIG00000024233)	psen2 (ENSPKIG00000024241)	memo1 (ENSPKIG00000024273)	srd5a2b (ENSPKIG00000024297)	mkks (ENSPKIG00000024314) #9	slx4ip (ENSPKIG00000024328) #10	ENSPKIG00000024339	BTBD3 (ENSPKIG00000024350) #14	sptlc3 (ENSPKIG00000024362) #16	ism1 (ENSPKIG00000024391) #17	tasp1 (ENSPKIG00000024416) #18	esf1 (ENSPKIG00000024448) #19	ndufaf5 (ENSPKIG00000024484) #20	MACROD2 (ENSPKIG00000024518) #22	flrt3 (ENSPKIG00000024539) #23	ENSPKIG00000024541
Asian bonytongue	MODERN SPECIES	19	psen2 (ENSSFOG00015009505)	memo1 (ENSSFOG00015009552)	srd5a2b (ENSSFOG00015009575)	mkks (ENSSFOG00015009652) #9	SLX4IP (ENSSFOG00015009679) #10	ENSSFOG00015009705	BTBD3 (ENSSFOG00015009867) #14	sptlc3 (ENSSFOG00015009932) #16	ism1 (ENSSFOG00015010039) #17	ENSSFOG00015030709	tasp1 (ENSSFOG00015010078) #18	ENSSFOG00015031537 #19	esf1 (ENSSFOG00015010145) #19	ndufaf5 (ENSSFOG00015010167) #20	flrt3 (ENSSFOG00015010370) #23	MACROD2 (ENSSFOG00015010225) #22	KIF16B (ENSSFOG00015010383)	ENSSFOG00015010475 ##26	OTOR (ENSSFOG00015010508) #27	pcsk2 (ENSSFOG00015010552) #29	BFSP1 (ENSSFOG00015010667) #30	prokr1b (ENSSFOG00015010694)	cnrip1a (ENSSFOG00015010755)	plek (ENSSFOG00015010711)	dnaaf10 (ENSSFOG00015010775)	c1d (ENSSFOG00015010861)	ENSSFOG00015010893	SPRED2 (ENSSFOG00015032832)	ACTR2 (ENSSFOG00015011048)	zgc:153169 (ENSSFOG00015011091) ##18	ENSSFOG00015032633
Clupeocephala	ANCESTRAL SPECIES	629																ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b
Euteleosteomorpha	ANCESTRAL SPECIES	17	ENSGT00940000159330	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000008808.r.b	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000154784.D.a.a.b.a.b	ENSGT00940000158672.c	ENSGT00390000001121
Protacanthopterygii	ANCESTRAL SPECIES	9	ENSGT00940000156150.x	ENSGT00940000177206	ENSGT00940000160250	ENSGT00940000157412.a.b	ENSGT00940000161045.a	ENSGT01050000244940.a.b	ENSGT00940000155509.b.a	ENSGT00940000159143.c	ENSGT00940000156033.f	ENSGT01090000260051.b.a.a.b.a	ENSGT00940000159449.c	ENSGT01060000248556.A.b.b	ENSGT00390000003652.c.a	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00980000203132	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT01000000217848	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00940000156914.o.a	ENSGT00940000165077	ENSGT00940000155303.k	ENSGT00940000154935.c.b.b	ENSGT00390000014618.a.a
Northern pike	MODERN SPECIES	5	gpx9 (ENSELUG00000029790)	ENSELUG00000013329	fbxl15 (ENSELUG00000013318)	pax2b (ENSELUG00000013291)	chst3b (ENSELUG00000013228)	GHITM (ENSELUG00000013210)	CDHR1 (ENSELUG00000013182)	LRIT2 (ENSELUG00000013146)	lrit1b (ENSELUG00000013116)	rgrb (ENSELUG00000013087)	slc18a3b (ENSELUG00000013055)	CHAT (ENSELUG00000013037)	PARG (ENSELUG00000012972)	ENSELUG00000006733	flrt3 (ENSELUG00000029984) #23	ENSELUG00000012892 #22	ENSELUG00000012812	ENSELUG00000032551	mad2l1bp (ENSELUG00000031585)	ENSELUG00000012743	EPHX1 (ENSELUG00000012704)	cyt (ENSELUG00000029059)	ENSELUG00000028513	ENSELUG00000012634	si:dkey-76k16.6 (ENSELUG00000012580)	mgme1 (ENSELUG00000000462) #36	snx5 (ENSELUG00000012556) #35	rrbp1a (ENSELUG00000012506) #33	anxa11b (ENSELUG00000012449)	ENSELUG00000000457	DLG5 (ENSELUG00000012407)
Salmoninae	ANCESTRAL SPECIES	201															ENSGT00940000159704.i #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b.d	ENSGT00390000003812	ENSGT01000000217848	ENSGT00940000154755.q	ENSGT01010000227566	ENSGT00950000183133.c.b	ENSGT00390000003349.x #36	ENSGT00940000154632.rb #35	ENSGT00940000158015.k.a.d #33	ENSGT00940000158015.k.a.c #33	ENSGT00940000156914.o.a	ENSGT00940000165077	ENSGT00940000155303.k	ENSGT00940000154935.d	ENSGT01060000252273
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT01100000263556.b.a.b	ENSGT00940000164807.E.a.a.a.b.a.a.b	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b.d	ENSGT00840000130048	ENSGT00400000022326.b.a.b.a.b.a.b	ENSGT00400000022326.b.a.b.a.b.a.a.b	ENSGT00940000156486.f	ENSGT00940000153496.a.b.a.d.b	ENSGT00940000159449.c.a	ENSGT01060000248556.A.b.b.f	ENSGT00950000183576	ENSGT00940000156878.i.a.b.j	ENSGT01010000223290	ENSGT00940000159704.i #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b.d	ENSGT00390000003812	ENSGT01000000217848	ENSGT00940000154755.q	ENSGT01010000227566	ENSGT00950000183133.c.b	ENSGT00390000003349.x #36	ENSGT00940000154632.rb #35	ENSGT00940000158015.k.a.d #33	ENSGT00940000165077.b.a	ENSGT00940000155303.k	ENSGT00940000154935.c.b.b.e	ENSGT00390000014618.a.a.a	ENSGT00950000182869.e.a.a.r.b	ENSGT00940000155540.b.b.h
Salmo	ANCESTRAL SPECIES	23	ENSGT01100000263556.b.a.b	ENSGT00940000164807.E.a.a.a.b.a.a.b	ENSGT00390000013648	ENSGT00390000004010.a.b.a.b.d	ENSGT00400000022326.b.a.b.a.b.a.b	ENSGT00400000022326.b.a.b.a.b.a.a.b	ENSGT00940000156486.f	ENSGT00940000153496.a.b.a.d.b	ENSGT00940000159449.c.a	ENSGT01060000248556.A.b.b.f	ENSGT00950000183576	ENSGT00940000156878.i.a.b.j	ENSGT00940000159704.i #23	ENSGT00960000193277.d	ENSGT01020000231608	ENSGT00940000157404 #22	ENSGT00940000162838.g.b.d	ENSGT00390000003812	ENSGT01000000217848	ENSGT00940000154755.q	ENSGT00950000183133.c.b	ENSGT00390000003349.x #36	ENSGT00940000154632.rb #35	ENSGT00940000158015.k.a.d #33	ENSGT00940000165077.b.a	ENSGT00940000155303.k	ENSGT00940000154935.c.b.b.e	ENSGT00390000014618.a.a.a	ENSGT00950000182869.e.a.a.r.b	ENSGT00940000155540.b.b.h	ENSGT00990000212911
Atlantic salmon	MODERN SPECIES		kdelr2b (ENSSSAG00000106651)	ENSSSAG00000001515	ENSSSAG00000089513	ENSSSAG00000083817	ENSSSAG00000001100	ENSSSAG00000001005	ENSSSAG00000000991	ENSSSAG00000000969	ENSSSAG00000105707	ENSSSAG00000122154	ARF4 (ENSSSAG00000000952)	flrt3 (ENSSSAG00000000935) #23	ENSSSAG00000099965	ENSSSAG00000083876	ENSSSAG00000000923	ENSSSAG00000107074 #22	ENSSSAG00000071942	mad2l1bp (ENSSSAG00000111635)	CYT (ENSSSAG00000071927)	ENSSSAG00000119742	si:dkey-76k16.6 (ENSSSAG00000071919)	ENSSSAG00000071915	snx5 (ENSSSAG00000077435) #35	rrbp1a (ENSSSAG00000071894) #33	ENSSSAG00000071876	DLG5 (ENSSSAG00000071416)	KCNMA1 (ENSSSAG00000005176)	ZNF503 (ENSSSAG00000003838)	ENSSSAG00000089959	VDAC2 (ENSSSAG00000003819)	SAMD8 (ENSSSAG00000103699)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000157404 #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000157404 #22
Chinook salmon	MODERN SPECIES		CDR2 (ENSOTSG00005014036)	ENSOTSG00005014035	ENSOTSG00005014034	ENSOTSG00005014033	mettl9 (ENSOTSG00005014032)	kdelr2b (ENSOTSG00005014031)	ENSOTSG00005014029	ENSOTSG00005014028	DAGLB (ENSOTSG00005013548)	SPAG9 (ENSOTSG00005008937)	SLC18A3 (ENSOTSG00005008920)	ENSOTSG00005008919	ENSOTSG00005008915	flrt3 (ENSOTSG00005008914) #23	mecp2 (ENSOTSG00005008909)	ENSOTSG00005008908 #22	ENSOTSG00005008907	ENSOTSG00005008904	mad2l1bp (ENSOTSG00005008903)	ENSOTSG00005008902	ENSOTSG00005008900	ENSOTSG00005008899	si:dkey-76k16.6 (ENSOTSG00005008897)	mgme1 (ENSOTSG00005008894) #36	snx5 (ENSOTSG00005008893) #35	rrbp1a (ENSOTSG00005008892) #33	DLG5 (ENSOTSG00005008105)	ENSOTSG00005005834	ZNF503 (ENSOTSG00005005794)	VDAC2 (ENSOTSG00005003562)	SAMD8 (ENSOTSG00005003538)
Acanthomorphata	ANCESTRAL SPECIES	16	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Pinecone sodierfish	MODERN SPECIES	6	HEATR5B (ENSMMDG00005018430)	STRN (ENSMMDG00005017892)	VIT (ENSMMDG00005017862)	ENSMMDG00005017857	SPAST (ENSMMDG00005017342)	memo1 (ENSMMDG00005017324)	srd5a2b (ENSMMDG00005017315)	mkks (ENSMMDG00005017308) #9	slx4ip (ENSMMDG00005017306) #10	jag1b (ENSMMDG00005014679)	BTBD3 (ENSMMDG00005014641) #14	sptlc3 (ENSMMDG00005012687) #16	ism1 (ENSMMDG00005012637) #17	tasp1 (ENSMMDG00005011374) #18	flrt3 (ENSMMDG00005011327) #23	macrod2 (ENSMMDG00005011326) #22	ENSMMDG00005011317	mad2l1bp (ENSMMDG00005011313)	EPHX1 (ENSMMDG00005011242)	ENSMMDG00005011239	cst3 (ENSMMDG00005011237)	ENSMMDG00005011235	ENSMMDG00005011232	ENSMMDG00005011226	ENSMMDG00005011222	mgme1 (ENSMMDG00005011218) #36	snx5 (ENSMMDG00005010592) #35	rrbp1a (ENSMMDG00005010565) #33	ENSMMDG00005010562 ##32	capn1a (ENSMMDG00005009520)	mrpl14 (ENSMMDG00005009500)
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Tiger tail seahorse	MODERN SPECIES	177	STRN (ENSHCOG00000010828)	VIT (ENSHCOG00000010888)	ENSHCOG00000010917	SPAST (ENSHCOG00000010925)	memo1 (ENSHCOG00000010954)	srd5a2b (ENSHCOG00000011093)	mkks (ENSHCOG00000011154) #9	slx4ip (ENSHCOG00000011186) #10	jag1b (ENSHCOG00000011231)	BTBD3 (ENSHCOG00000011251) #14	sptlc3 (ENSHCOG00000011296) #16	ism1 (ENSHCOG00000011304) #17	tasp1 (ENSHCOG00000011341) #18	flrt3 (ENSHCOG00000011347) #23	ENSHCOG00000011383	ENSHCOG00000011419 #22	mad2l1bp (ENSHCOG00000011425)	EPHX1 (ENSHCOG00000011517)	cst3 (ENSHCOG00000011639)	ENSHCOG00000011690	ENSHCOG00000011705	mgme1 (ENSHCOG00000011698) #36	snx5 (ENSHCOG00000011741) #35	rrbp1a (ENSHCOG00000011763) #33	capn2l (ENSHCOG00000011841)	capn1a (ENSHCOG00000011931)	mrpl14 (ENSHCOG00000011944)	ENSHCOG00000011955	ENSHCOG00000011961	ENSHCOG00000012038	ENSHCOG00000012045
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000176188	ENSGT00970000197202	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a.i.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b	ENSGT00390000010094.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a.i.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b	ENSGT00390000010094.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a.b	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00940000173161	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00950000183133.c.a.i.a	ENSGT00940000154755	ENSGT00950000183133.c.a.i.b	ENSGT00390000003349 #36	ENSGT00950000183133.c.b	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a.b	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00940000173161	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.db	ENSGT00950000183133.c.a.i.a	ENSGT00390000003349 #36	ENSGT00950000183133.c.b	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b	ENSGT00390000010094.b
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a.b	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00940000173161	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.db	ENSGT00950000183133.c.a.i.a.a	ENSGT00950000183133.c.b.e	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b	ENSGT00390000010094.b
P. nyererei	MODERN SPECIES	536										jag1b (ENSPNYG00000018860)	BTBD3 (ENSPNYG00000018843) #14	sptlc3 (ENSPNYG00000018802) #16	ism1 (ENSPNYG00000018782) #17	tasp1 (ENSPNYG00000018702) #18	flrt3 (ENSPNYG00000018677) #23	ENSPNYG00000018658 #22	mad2l1bp (ENSPNYG00000018628)	EPHX1 (ENSPNYG00000018591)	cst3 (ENSPNYG00000018569)	ENSPNYG00000018551	si:dkey-76k16.6 (ENSPNYG00000018530)	mgme1 (ENSPNYG00000018537) #36	snx5 (ENSPNYG00000018492) #35	rrbp1a (ENSPNYG00000018464) #33	ENSPNYG00000018453 ##32	ENSPNYG00000018437	capn1a (ENSPNYG00000018396)	mrpl14 (ENSPNYG00000018386)	ENSPNYG00000018373	ENSPNYG00000018346	ENSPNYG00000018322
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a.b	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00940000173161	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.db	ENSGT00950000183133.c.a.i.b	ENSGT00950000183133.c.a.i.a.a.a	ENSGT00950000183133.c.b.e	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Eastern happy	MODERN SPECIES	4	gpatch11 (ENSACLG00000024037)	HEATR5B (ENSACLG00000024095)	STRN (ENSACLG00000024334)	VIT (ENSACLG00000024370)	ENSACLG00000024629	ENSACLG00000024662	memo1 (ENSACLG00000024677)	srd5a2b (ENSACLG00000024735)	mkks (ENSACLG00000024744) #9	ENSACLG00000024756	jag1b (ENSACLG00000024773)	BTBD3 (ENSACLG00000024974) #14	tasp1 (ENSACLG00000024990) #18	sptlc3 (ENSACLG00000025168) #16	ism1 (ENSACLG00000025200) #17	macrod2 (ENSACLG00000025244) #22	flrt3 (ENSACLG00000025261) #23	KIF16B (ENSACLG00000025264)	mad2l1bp (ENSACLG00000025281)	EPHX1 (ENSACLG00000025287)	ENSACLG00000025314	ENSACLG00000025321	ENSACLG00000025334	si:dkey-76k16.6 (ENSACLG00000025349)	ENSACLG00000025372	si:dkey-76k16.6 (ENSACLG00000025379)	mgme1 (ENSACLG00000025408) #36	snx5 (ENSACLG00000025419) #35	rrbp1a (ENSACLG00000025482) #33	ENSACLG00000025553 ##32	ENSACLG00000025577
Zebra mbuna	MODERN SPECIES	1095	pde10a (ENSMZEG00005008134)	ENSMZEG00005008216	pla2g12b (ENSMZEG00005008222)	OIT3 (ENSMZEG00005008239)	mcu (ENSMZEG00005008268)	micu1 (ENSMZEG00005008277)	ENSMZEG00005008313	mrps6 (ENSMZEG00005008327)	psap (ENSMZEG00005008340)	SLC29A3 (ENSMZEG00005008354)	unc5b (ENSMZEG00005008372)	ly6pge (ENSMZEG00005008401)	ENSMZEG00005008468	nsmce4a (ENSMZEG00005008674)	flrt3 (ENSMZEG00005008682) #23	macrod2 (ENSMZEG00005008696) #22	ENSMZEG00005008708	mad2l1bp (ENSMZEG00005008739)	EPHX1 (ENSMZEG00005008747)	cst3 (ENSMZEG00005008766)	ENSMZEG00005008777	ENSMZEG00005008786	ENSMZEG00005008799	si:dkey-76k16.6 (ENSMZEG00005008805)	ENSMZEG00005008815	si:dkey-76k16.6 (ENSMZEG00005008824)	si:dkey-76k16.6 (ENSMZEG00005008835)	mgme1 (ENSMZEG00005008855) #36	snx5 (ENSMZEG00005008866) #35	rrbp1a (ENSMZEG00005008901) #33	ENSMZEG00005008951 ##32
Lyretail cichlid	MODERN SPECIES	464	gpatch11 (ENSNBRG00000012291)	HEATR5B (ENSNBRG00000012371)	STRN (ENSNBRG00000012461)	VIT (ENSNBRG00000012480)	ENSNBRG00000012516	ENSNBRG00000012523	ENSNBRG00000012544	memo1 (ENSNBRG00000012556)	srd5a2b (ENSNBRG00000012600)	mkks (ENSNBRG00000012684) #9	jag1b (ENSNBRG00000012716)	BTBD3 (ENSNBRG00000012764) #14	sptlc3 (ENSNBRG00000012774) #16	ism1 (ENSNBRG00000012807) #17	tasp1 (ENSNBRG00000012819) #18	macrod2 (ENSNBRG00000012850) #22	flrt3 (ENSNBRG00000012881) #23	ENSNBRG00000012886	mad2l1bp (ENSNBRG00000012891)	EPHX1 (ENSNBRG00000012906)	ENSNBRG00000012939	cst3 (ENSNBRG00000012954)	si:dkey-76k16.6 (ENSNBRG00000012968)	snx5 (ENSNBRG00000012975) #35	rrbp1a (ENSNBRG00000013000) #33	ENSNBRG00000013011 ##32	ENSNBRG00000013021	capn1a (ENSNBRG00000013080)	mrpl14 (ENSNBRG00000013115)	TMEM63B (ENSNBRG00000013142)	ENSNBRG00000013168
Nile tilapia	MODERN SPECIES	4	HEATR5B (ENSONIG00000010077)	STRN (ENSONIG00000010067)	VIT (ENSONIG00000010061)	ENSONIG00000010060	SPAST (ENSONIG00000010056)	memo1 (ENSONIG00000010052)	srd5a2 (ENSONIG00000027842)	mkks (ENSONIG00000010046) #9	slx4ip (ENSONIG00000027252) #10	jag1b (ENSONIG00000010039)	BTBD3 (ENSONIG00000010037) #14	sptlc3 (ENSONIG00000010032) #16	ism1 (ENSONIG00000010030) #17	tasp1 (ENSONIG00000010027) #18	flrt3 (ENSONIG00000021268) #23	ENSONIG00000027922 #22	ENSONIG00000040784	ENSONIG00000038467	mad2l1bp (ENSONIG00000010026)	EPHX1 (ENSONIG00000010022)	ENSONIG00000010020	cst3 (ENSONIG00000010019)	ENSONIG00000010018	si:dkey-76k16.6 (ENSONIG00000034096)	ENSONIG00000028788	mgme1 (ENSONIG00000010017) #36	snx5 (ENSONIG00000010013) #35	rrbp1a (ENSONIG00000010011) #33	ENSONIG00000010009 ##32	ENSONIG00000009988	capn1a (ENSONIG00000009965)
Pomacentridae	ANCESTRAL SPECIES	9	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Bicolor damselfish	MODERN SPECIES	237	HEATR5B (ENSSPAG00000007729)	STRN (ENSSPAG00000007845)	VIT (ENSSPAG00000007934)	ENSSPAG00000007966	SPAST (ENSSPAG00000007993)	memo1 (ENSSPAG00000008018)	srd5a2b (ENSSPAG00000008065)	mkks (ENSSPAG00000008081) #9	slx4ip (ENSSPAG00000008114) #10	jag1b (ENSSPAG00000008142)	ENSSPAG00000008242	BTBD3 (ENSSPAG00000008250) #14	sptlc3 (ENSSPAG00000008271) #16	ism1 (ENSSPAG00000008323) #17	tasp1 (ENSSPAG00000008342) #18	ENSSPAG00000008388 #22	flrt3 (ENSSPAG00000008438) #23
Pomacentridae_A	ANCESTRAL SPECIES	7	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Spiny chromis	MODERN SPECIES	329															tasp1 (ENSAPOG00000002800) #18	ENSAPOG00000002770 #22	flrt3 (ENSAPOG00000002754) #23	mad2l1bp (ENSAPOG00000002746)
Amphiprion	ANCESTRAL SPECIES	45	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Orange clownfish	MODERN SPECIES	12	STRN (ENSAPEG00000023506)	VIT (ENSAPEG00000023484)	ENSAPEG00000023477	ENSAPEG00000023461	SPAST (ENSAPEG00000023437)	memo1 (ENSAPEG00000023405)	srd5a2b (ENSAPEG00000023353)	mkks (ENSAPEG00000023348) #9	ENSAPEG00000023329	jag1b (ENSAPEG00000023277)	BTBD3 (ENSAPEG00000023258) #14	sptlc3 (ENSAPEG00000023210) #16	ism1 (ENSAPEG00000023195) #17	tasp1 (ENSAPEG00000023173) #18	flrt3 (ENSAPEG00000023170) #23	ENSAPEG00000023136 #22	ENSAPEG00000023058	mad2l1bp (ENSAPEG00000023051)	EPHX1 (ENSAPEG00000023026)	cst3 (ENSAPEG00000023017)	ENSAPEG00000023010	si:dkey-76k16.6 (ENSAPEG00000023006)	mgme1 (ENSAPEG00000022996) #36	snx5 (ENSAPEG00000022985) #35	rrbp1a (ENSAPEG00000022935) #33	ENSAPEG00000022916 ##32	capn2l (ENSAPEG00000022893)	ENSAPEG00000022190	capn1a (ENSAPEG00000020321)	mrpl14 (ENSAPEG00000020026)	TMEM63B (ENSAPEG00000019994)
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000169225	ENSGT00940000154755.bb	ENSGT00950000183133.c.a	ENSGT00940000154755.cb	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c
Oryzias	ANCESTRAL SPECIES	6	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.bb.f	ENSGT00940000169225.b.a.b	ENSGT00940000169225.b.a.a	ENSGT00940000154755.bb.e.a.a	ENSGT00940000154755.cb	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.bb.f	ENSGT00940000169225.b.a.b	ENSGT00940000169225.b.a.a	ENSGT00940000154755.bb.e.a.a	ENSGT00940000154755.cb	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c
Japanese Medaka HdrR	MODERN SPECIES	6	STRN (ENSORLG00000012319)	ENSORLG00000029791	VIT (ENSORLG00000012264)	ENSORLG00000020890	SPAST (ENSORLG00000012235)	memo1 (ENSORLG00000012215)	srd5a2b (ENSORLG00000024527)	mkks (ENSORLG00000012207) #9	slx4ip (ENSORLG00000026106) #10	jag1b (ENSORLG00000012175)	BTBD3 (ENSORLG00000012118) #14	sptlc3 (ENSORLG00000012104) #16	ism1 (ENSORLG00000012072) #17	tasp1 (ENSORLG00000012063) #18	flrt3 (ENSORLG00000026789) #23	ENSORLG00000012049 #22	ENSORLG00000012033	mad2l1bp (ENSORLG00000025014)	EPHX1 (ENSORLG00000012021)	ENSORLG00000027846	ENSORLG00000011980	ENSORLG00000029554	ENSORLG00000011973	ENSORLG00000011970	ENSORLG00000011965	ENSORLG00000011963	si:dkey-76k16.6 (ENSORLG00000011959)	mgme1 (ENSORLG00000025746) #36	snx5 (ENSORLG00000011923) #35	ENSORLG00000011865 ##32	rrbp1a (ENSORLG00000011879) #33
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.bb.f	ENSGT00940000169225.b.a.b	ENSGT00940000169225.b.a.a.d	ENSGT00940000154755.bb.e.a.b	ENSGT00940000169225.b.b	ENSGT00940000169225.b.a.a.c.a.a	ENSGT00940000154755.bb.e.a.a	ENSGT00940000154755.bb.e.b	ENSGT00940000154755.cb	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35
Javanese ricefish	MODERN SPECIES	6	HEATR5B (ENSOJAG00000019759)	STRN (ENSOJAG00000019389)	VIT (ENSOJAG00000019314)	ENSOJAG00000019280	memo1 (ENSOJAG00000018608)	srd5a2b (ENSOJAG00000018595)	mkks (ENSOJAG00000018585) #9	slx4ip (ENSOJAG00000018567) #10	jag1b (ENSOJAG00000017408)	BTBD3 (ENSOJAG00000017329) #14	sptlc3 (ENSOJAG00000017158) #16	ism1 (ENSOJAG00000017122) #17	tasp1 (ENSOJAG00000016711) #18	flrt3 (ENSOJAG00000016668) #23	ENSOJAG00000016655	ENSOJAG00000016642 #22	ENSOJAG00000016626	mad2l1bp (ENSOJAG00000016608)	EPHX1 (ENSOJAG00000016568)	ENSOJAG00000016558	ENSOJAG00000016535	ENSOJAG00000016511	ENSOJAG00000016503	ENSOJAG00000016483	ENSOJAG00000016470	ENSOJAG00000016338	ENSOJAG00000016256	ENSOJAG00000016145	ENSOJAG00000016127	ENSOJAG00000016115	si:dkey-76k16.6 (ENSOJAG00000016106)
Indian medaka	MODERN SPECIES	27	VIT (ENSOMEG00000020181)	ENSOMEG00000020247	SPAST (ENSOMEG00000020289)	memo1 (ENSOMEG00000020365)	srd5a2b (ENSOMEG00000020406)	mkks (ENSOMEG00000020417) #9	slx4ip (ENSOMEG00000020442) #10	jag1b (ENSOMEG00000020537)	ENSOMEG00000020572	BTBD3 (ENSOMEG00000020590) #14	sptlc3 (ENSOMEG00000020617) #16	ism1 (ENSOMEG00000020648) #17	tasp1 (ENSOMEG00000020749) #18	ENSOMEG00000020785	flrt3 (ENSOMEG00000020799) #23	ENSOMEG00000020834 #22	ENSOMEG00000020891	mad2l1bp (ENSOMEG00000020909)	EPHX1 (ENSOMEG00000020936)	ENSOMEG00000020961	ENSOMEG00000020988	ENSOMEG00000000553	ENSOMEG00000021013	ENSOMEG00000021035	ENSOMEG00000021050	ENSOMEG00000021062	ENSOMEG00000021079	ENSOMEG00000021090	ENSOMEG00000021116	ENSOMEG00000021139	ENSOMEG00000021151
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00970000197202	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000169225	ENSGT00940000154755.bb	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b
Aplocheiloidei	ANCESTRAL SPECIES	28	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00940000173161	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.bb.a.b	ENSGT00940000154755.bb.a.a	ENSGT00940000169225	ENSGT00940000154755.bb.b	ENSGT00950000183133.c.a	ENSGT00390000003349 #36	ENSGT00950000183133.c.b	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b
Mangrove rivulus	MODERN SPECIES	23													sptlc3 (ENSKMAG00000014453) #16	ism1 (ENSKMAG00000014501) #17	tasp1 (ENSKMAG00000014528) #18	ENSKMAG00000014614 #22	ENSKMAG00000014666	flrt3 (ENSKMAG00000014673) #23	mad2l1bp (ENSKMAG00000014683)	EPHX1 (ENSKMAG00000014701)	ENSKMAG00000014736	ENSKMAG00000014744	ENSKMAG00000014754	ENSKMAG00000014801	ENSKMAG00000014815	ENSKMAG00000014831	mgme1 (ENSKMAG00000014851) #36	si:dkey-76k16.6 (ENSKMAG00000014859)	snx5 (ENSKMAG00000014874) #35	rrbp1a (ENSKMAG00000014934) #33	ENSKMAG00000015014 ##32
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.bb.c.b	ENSGT00950000183133.c.a	ENSGT00940000169225	ENSGT00940000154755.bb.c.a	ENSGT00940000154755.bb.d	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00970000197202	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.bb.c.b	ENSGT00940000154755.bb.c.a.b	ENSGT00940000169225	ENSGT00940000154755.bb.c.a.a	ENSGT00940000154755.bb.d	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33
Platyfish	MODERN SPECIES	14	gpatch11 (ENSXMAG00000006508)	HEATR5B (ENSXMAG00000006472)	STRN (ENSXMAG00000006457)	VIT (ENSXMAG00000006446)	ENSXMAG00000006440	SPAST (ENSXMAG00000006416)	memo1 (ENSXMAG00000006396)	srd5a2b (ENSXMAG00000006388)	mkks (ENSXMAG00000006382) #9	slx4ip (ENSXMAG00000026044) #10	jag1b (ENSXMAG00000006308)	BTBD3 (ENSXMAG00000021775) #14	sptlc3 (ENSXMAG00000029893) #16	ism1 (ENSXMAG00000006273) #17	tasp1 (ENSXMAG00000006253) #18	ENSXMAG00000029786 #22	flrt3 (ENSXMAG00000019821) #23	mad2l1bp (ENSXMAG00000006243)	EPHX1 (ENSXMAG00000006228)	ENSXMAG00000022467	ENSXMAG00000026050	ENSXMAG00000022325	ENSXMAG00000006211	ENSXMAG00000006208	mgme1 (ENSXMAG00000028599) #36	snx5 (ENSXMAG00000006160) #35	rrbp1a (ENSXMAG00000006142) #33	ENSXMAG00000022802 ##32	ENSXMAG00000006017	capn1a (ENSXMAG00000005878)	mrpl14 (ENSXMAG00000024229)
Poecilia	ANCESTRAL SPECIES	11	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00950000183045.B.f #18	ENSGT00940000159062 #17	ENSGT00950000183045.B.e #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.bb.c.b	ENSGT00940000154755.bb.c.a.b	ENSGT00940000169225	ENSGT00940000154755.bb.c.a.a	ENSGT00940000154755.bb.d	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b
NAME_6	ANCESTRAL SPECIES	73											ENSGT00940000158513 #16	ENSGT00950000183045.B.f #18	ENSGT00940000159062 #17	ENSGT00950000183045.B.e #18	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755.bb.c.b	ENSGT00940000169225	ENSGT00940000154755.bb.c.a.a.a	ENSGT00940000154755.bb.c.a.a.b	ENSGT00940000154755.bb.c.a.b	ENSGT00940000154755.bb.d	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32
Amazon molly	MODERN SPECIES	267											tasp1 (ENSPFOG00000017345) #18	sptlc3 (ENSPFOG00000017387) #16	ism1 (ENSPFOG00000017336) #17	tasp1 (ENSPFOG00000017310) #18	flrt3 (ENSPFOG00000019998) #23	ENSPFOG00000017303 #22	ENSPFOG00000022125	mad2l1bp (ENSPFOG00000017294)	EPHX1 (ENSPFOG00000017269)	ENSPFOG00000022316	ENSPFOG00000017258	ENSPFOG00000024617	ENSPFOG00000017249	ENSPFOG00000017247	ENSPFOG00000017237	ENSPFOG00000017245	si:dkey-76k16.6 (ENSPFOG00000017230)	mgme1 (ENSPFOG00000017211) #36	snx5 (ENSPFOG00000017151) #35	rrbp1a (ENSPFOG00000017093) #33	ENSPFOG00000017145 ##32
NAME_4	ANCESTRAL SPECIES	225	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00390000003812
Sheepshead minnow	MODERN SPECIES	202					calm2a (ENSCVAG00000020712)	ENSCVAG00000020692	ENSCVAG00000020657	ENSCVAG00000020639	epcam (ENSCVAG00000020618)	PLEKHH2 (ENSCVAG00000020482)	ENSCVAG00000020278	ENSCVAG00000020256	ENSCVAG00000020132	ENSCVAG00000020129	flrt3 (ENSCVAG00000020111) #23	ENSCVAG00000020103 #22	mad2l1bp (ENSCVAG00000020096)	ENSCVAG00000020088	ENSCVAG00000020084	btr12 (ENSCVAG00000020057)	ENSCVAG00000020025	ENSCVAG00000020004	ENSCVAG00000019984	LRBA (ENSCVAG00000019569)	mab21l2 (ENSCVAG00000019140)	rps3a (ENSCVAG00000019113)	sh3d19 (ENSCVAG00000019092)
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT00940000159330.g.b	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000176188	ENSGT00970000197202	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT00940000159330.g.b	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.g.b	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b	ENSGT00390000010094.b
Fugu	MODERN SPECIES	16	gpatch11 (ENSTRUG00000024052)	HEATR5B (ENSTRUG00000004006)	STRN (ENSTRUG00000005371)	VIT (ENSTRUG00000005729)	ENSTRUG00000006137	SPAST (ENSTRUG00000000131)	memo1 (ENSTRUG00000000155)	mkks (ENSTRUG00000000162) #9	slx4ip (ENSTRUG00000025568) #10	jag1b (ENSTRUG00000030297)	BTBD3 (ENSTRUG00000000170) #14	sptlc3 (ENSTRUG00000000176) #16	ism1 (ENSTRUG00000000202) #17	tasp1 (ENSTRUG00000000209) #18	flrt3 (ENSTRUG00000018142) #23	ENSTRUG00000000219 #22	ENSTRUG00000026979	mad2l1bp (ENSTRUG00000032287)	EPHX1 (ENSTRUG00000006133)	cst3 (ENSTRUG00000006415)	ENSTRUG00000032856	mgme1 (ENSTRUG00000006643) #36	snx5 (ENSTRUG00000006736) #35	rrbp1a (ENSTRUG00000007143) #33	ENSTRUG00000019845 ##32	ENSTRUG00000007432	capn1a (ENSTRUG00000008487)	mrpl14 (ENSTRUG00000031140)	ENSTRUG00000031918	TMEM63B (ENSTRUG00000010221)	ENSTRUG00000023393
Tetraodon	MODERN SPECIES	9	ENSTNIG00000000327	gpatch11 (ENSTNIG00000001655)	HEATR5B (ENSTNIG00000016651)	STRN (ENSTNIG00000016650)	VIT (ENSTNIG00000016649)	ENSTNIG00000016648	memo1 (ENSTNIG00000016647)	srd5a2b (ENSTNIG00000016646)	mkks (ENSTNIG00000016645) #9	jag1b (ENSTNIG00000016644)	ENSTNIG00000016643	ENSTNIG00000002132	sptlc3 (ENSTNIG00000016642) #16	ism1 (ENSTNIG00000016641) #17	tasp1 (ENSTNIG00000016640) #18	ENSTNIG00000016639 #22	flrt3 (ENSTNIG00000016638) #23	ENSTNIG00000016637	mad2l1bp (ENSTNIG00000000387)	EPHX1 (ENSTNIG00000016636)	cst3 (ENSTNIG00000016635)	ENSTNIG00000016634	mgme1 (ENSTNIG00000016633) #36	snx5 (ENSTNIG00000016632) #35	rrbp1a (ENSTNIG00000016631) #33	capn2l (ENSTNIG00000016630)	ENSTNIG00000016629	ENSTNIG00000016628	capn1a (ENSTNIG00000016627)	mrpl14 (ENSTNIG00000016626)	TMEM63B (ENSTNIG00000016625)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121
Ballan wrasse	MODERN SPECIES	670																ENSLBEG00000009217 #22
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Large yellow croaker	MODERN SPECIES	2	gpatch11 (ENSLCRG00005003827)	HEATR5B (ENSLCRG00005003848)	STRN (ENSLCRG00005003946)	VIT (ENSLCRG00005004487)	ENSLCRG00005004495	SPAST (ENSLCRG00005004507)	memo1 (ENSLCRG00005004574)	srd5a2b (ENSLCRG00005004580)	mkks (ENSLCRG00005004584) #9	slx4ip (ENSLCRG00005004585) #10	jag1b (ENSLCRG00005004600)	BTBD3 (ENSLCRG00005005990) #14	sptlc3 (ENSLCRG00005006007) #16	ism1 (ENSLCRG00005007854) #17	tasp1 (ENSLCRG00005007860) #18	macrod2 (ENSLCRG00005007876) #22	flrt3 (ENSLCRG00005007877) #23	KIF16B (ENSLCRG00005007878)	mad2l1bp (ENSLCRG00005007883)	EPHX1 (ENSLCRG00005007886)	cst3 (ENSLCRG00005007906)	ENSLCRG00005007908	si:dkey-76k16.6 (ENSLCRG00005007912)	mgme1 (ENSLCRG00005007919) #36	snx5 (ENSLCRG00005007928) #35	rrbp1a (ENSLCRG00005007950) #33	ENSLCRG00005007951 ##32	capn2l (ENSLCRG00005007957)	capn1a (ENSLCRG00005008015)	mrpl14 (ENSLCRG00005008348)	TMEM63B (ENSLCRG00005008359)
European seabass	MODERN SPECIES	1	GPATCH11 (ENSDLAG00005025055)	HEATR5B (ENSDLAG00005025071)	STRN (ENSDLAG00005025193)	VIT (ENSDLAG00005025537)	ENSDLAG00005025539	SPAST (ENSDLAG00005025547)	memo1 (ENSDLAG00005031630)	srd5a2b (ENSDLAG00005025572)	mkks (ENSDLAG00005025573) #9	slx4ip (ENSDLAG00005028935) #10	jag1b (ENSDLAG00005025630)	BTBD3 (ENSDLAG00005027009) #14	sptlc3 (ENSDLAG00005025776) #16	ism1 (ENSDLAG00005000072) #17	tasp1 (ENSDLAG00005000081) #18	macrod2 (ENSDLAG00005000090) #22	ENSDLAG00005028369 #23	KIF16B (ENSDLAG00005000102)	mad2l1bp (ENSDLAG00005031662)	ENSDLAG00005000131	ENSDLAG00005000208 #36	cst3 (ENSDLAG00005000164)	si:dkey-76k16.6 (ENSDLAG00005000187)	snx5 (ENSDLAG00005000285) #35	rrbp1a (ENSDLAG00005000548) #33	ENSDLAG00005000562 ##32	ENSDLAG00005000590	CAPN11 (ENSDLAG00005001439)	ENSDLAG00005004618	ENSDLAG00005004643	ENSDLAG00005027891
Gilthead seabream	MODERN SPECIES	6	HEATR5B (ENSSAUG00010005081)	STRN (ENSSAUG00010004922)	VIT (ENSSAUG00010004830)	ENSSAUG00010004815	SPAST (ENSSAUG00010003337)	memo1 (ENSSAUG00010003308)	srd5a2b (ENSSAUG00010003302)	mkks (ENSSAUG00010003296) #9	slx4ip (ENSSAUG00010003290) #10	jag1b (ENSSAUG00010002541)	BTBD3 (ENSSAUG00010026421) #14	sptlc3 (ENSSAUG00010026226) #16	ism1 (ENSSAUG00010026206) #17	tasp1 (ENSSAUG00010026121) #18	flrt3 (ENSSAUG00010026114) #23	macrod2 (ENSSAUG00010026112) #22	ENSSAUG00010026108	mad2l1bp (ENSSAUG00010026105)	ENSSAUG00010026101	ENSSAUG00010026099	ENSSAUG00010026098	ENSSAUG00010026094	ENSSAUG00010026093	si:dkey-76k16.6 (ENSSAUG00010026089)	EPHX1 (ENSSAUG00010026079)	mgme1 (ENSSAUG00010026072) #36	snx5 (ENSSAUG00010026032) #35	rrbp1a (ENSSAUG00010026028) #33	ENSSAUG00010026027 ##32	capn2l (ENSSAUG00010026026)	ENSSAUG00010026025
Perciformes	ANCESTRAL SPECIES	17	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121
Pike perch	MODERN SPECIES	10	gpatch11 (ENSSLUG00000005118)	HEATR5B (ENSSLUG00000005323)	STRN (ENSSLUG00000006575)	VIT (ENSSLUG00000007756)	ENSSLUG00000007814	SPAST (ENSSLUG00000007876)	memo1 (ENSSLUG00000009002)	srd5a2b (ENSSLUG00000009031)	mkks (ENSSLUG00000009052) #9	slx4ip (ENSSLUG00000009071) #10	jag1b (ENSSLUG00000009252)	BTBD3 (ENSSLUG00000011285) #14	sptlc3 (ENSSLUG00000011339) #16	ism1 (ENSSLUG00000012475) #17	tasp1 (ENSSLUG00000012494) #18	MACROD2 (ENSSLUG00000012558) #22	flrt3 (ENSSLUG00000012564) #23	ENSSLUG00000012567	mad2l1bp (ENSSLUG00000012568)	EPHX1 (ENSSLUG00000012576)	ENSSLUG00000012633	ENSSLUG00000012640	ENSSLUG00000012641	si:dkey-76k16.6 (ENSSLUG00000012649)	mgme1 (ENSSLUG00000012656) #36	snx5 (ENSSLUG00000012686) #35	rrbp1a (ENSSLUG00000013125) #33	ENSSLUG00000013138 ##32	ENSSLUG00000013250	capn1a (ENSSLUG00000017054)	mrpl14 (ENSSLUG00000018207)
Cottioidei	ANCESTRAL SPECIES	17	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT00940000159330.g.a	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b	ENSGT00390000010094.b
Lumpfish	MODERN SPECIES	6	HEATR5B (ENSCLMG00005019960)	STRN (ENSCLMG00005019891)	ENSCLMG00005019890	ENSCLMG00005019889	ENSCLMG00005019888	SPAST (ENSCLMG00005019862)	memo1 (ENSCLMG00005019853)	srd5a2b (ENSCLMG00005019850)	mkks (ENSCLMG00005019847) #9	jag1b (ENSCLMG00005019531)	BTBD3 (ENSCLMG00005019529) #14	sptlc3 (ENSCLMG00005019050) #16	ism1 (ENSCLMG00005019031) #17	tasp1 (ENSCLMG00005019010) #18	flrt3 (ENSCLMG00005019007) #23	macrod2 (ENSCLMG00005019006) #22	ENSCLMG00005019002	mad2l1bp (ENSCLMG00005018999)	EPHX1 (ENSCLMG00005018996)	cst3 (ENSCLMG00005018995)	mgme1 (ENSCLMG00005018993) #36	snx5 (ENSCLMG00005018581) #35	rrbp1a (ENSCLMG00005018572) #33	ENSCLMG00005018570 ##32	capn2l (ENSCLMG00005017837)	ENSCLMG00005016900	capn1a (ENSCLMG00005016781)	mrpl14 (ENSCLMG00005016776)	TMEM63B (ENSCLMG00005013312)	ENSCLMG00005013286	ENSCLMG00005013285
Stickleback	MODERN SPECIES	6	ENSGACG00000004345	eif2ak2 (ENSGACG00000004355)	gpatch11 (ENSGACG00000004367)	HEATR5B (ENSGACG00000004370)	STRN (ENSGACG00000004399)	VIT (ENSGACG00000004414)	ENSGACG00000004428	SPAST (ENSGACG00000004443)	memo1 (ENSGACG00000004455)	mkks (ENSGACG00000004481) #9	jag1b (ENSGACG00000004493)	BTBD3 (ENSGACG00000004507) #14	sptlc3 (ENSGACG00000004513) #16	ism1 (ENSGACG00000004530) #17	tasp1 (ENSGACG00000004532) #18	macrod2 (ENSGACG00000004566) #22	flrt3 (ENSGACG00000004572) #23	mad2l1bp (ENSGACG00000004576)	EPHX1 (ENSGACG00000004582)	ENSGACG00000004652	ENSGACG00000004654	mgme1 (ENSGACG00000004659) #36	snx5 (ENSGACG00000004673) #35	rrbp1a (ENSGACG00000004737) #33	ENSGACG00000004750 ##32	capn2l (ENSGACG00000004767)	capn1a (ENSGACG00000004833)	mrpl14 (ENSGACG00000004984)	TMEM63B (ENSGACG00000004988)	ENSGACG00000005030	nsmce4a (ENSGACG00000005042)
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000176188	ENSGT00970000197202	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b
Carangaria	ANCESTRAL SPECIES	19	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000176188	ENSGT00970000197202	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b
Carangaria_A	ANCESTRAL SPECIES	29	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT01010000223290	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00970000197202	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121
Seriola	ANCESTRAL SPECIES	14	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000159704 #23	ENSGT00940000157404 #22	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.a	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.a.a.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b
Greater amberjack	MODERN SPECIES	30	HEATR5B (ENSSDUG00000002667)	STRN (ENSSDUG00000002578)	VIT (ENSSDUG00000002544)	ENSSDUG00000002514	SPAST (ENSSDUG00000002494)	memo1 (ENSSDUG00000002449)	srd5a2b (ENSSDUG00000002399)	mkks (ENSSDUG00000002383) #9	slx4ip (ENSSDUG00000002377) #10	jag1b (ENSSDUG00000002321)	BTBD3 (ENSSDUG00000002304) #14	sptlc3 (ENSSDUG00000002286) #16	ism1 (ENSSDUG00000002273) #17	tasp1 (ENSSDUG00000002232) #18	flrt3 (ENSSDUG00000002221) #23	macrod2 (ENSSDUG00000002184) #22	mad2l1bp (ENSSDUG00000002133)	cst3 (ENSSDUG00000002114)	EPHX1 (ENSSDUG00000001926)	ENSSDUG00000001896	mgme1 (ENSSDUG00000001833) #36	snx5 (ENSSDUG00000001769) #35	rrbp1a (ENSSDUG00000001688) #33	ENSSDUG00000001671 ##32	capn2l (ENSSDUG00000001627)	ENSSDUG00000001541	capn1a (ENSSDUG00000001497)	mrpl14 (ENSSDUG00000001464)	TMEM63B (ENSSDUG00000001392)	ENSSDUG00000001357	ENSSDUG00000001341
Pleuronectoidei	ANCESTRAL SPECIES	28	ENSGT00940000163863.f.b.b	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23
Tongue sole	MODERN SPECIES	3	ENSCSEG00000006668	eif4e1c (ENSCSEG00000006680)	si:dkey-228d14.5 (ENSCSEG00000006688)	zgc:110319 (ENSCSEG00000006699)	ccar1 (ENSCSEG00000006707)	ENSCSEG00000006729	si:ch211-198a12.6 (ENSCSEG00000006739)	ENSCSEG00000006742	zgc:154058 (ENSCSEG00000006748)	mat1a (ENSCSEG00000006756)	jag1b (ENSCSEG00000006774)	BTBD3 (ENSCSEG00000006847) #14	sptlc3 (ENSCSEG00000006855) #16	ism1 (ENSCSEG00000006862) #17	tasp1 (ENSCSEG00000006877) #18	ENSCSEG00000006931 #22	flrt3 (ENSCSEG00000006975) #23	fuom (ENSCSEG00000006986)	echs1 (ENSCSEG00000007019)	sprn (ENSCSEG00000007151)	mtg1 (ENSCSEG00000007158)	paox (ENSCSEG00000007205)	rassf4a (ENSCSEG00000007227)	ENSCSEG00000007273	ENSCSEG00000007282	cxcl12a (ENSCSEG00000007286)	ERCC6 (ENSCSEG00000007301)	drgx (ENSCSEG00000007379)	vstm4a (ENSCSEG00000007399)	ENSCSEG00000007423	LRRC18 (ENSCSEG00000007446)
Turbot	MODERN SPECIES	6	HEATR5B (ENSSMAG00000010167)	STRN (ENSSMAG00000010123)	VIT (ENSSMAG00000010055)	ENSSMAG00000010025	ENSSMAG00000028791	ENSSMAG00000010013	memo1 (ENSSMAG00000009980)	mkks (ENSSMAG00000009943) #9	slx4ip (ENSSMAG00000009935) #10	jag1b (ENSSMAG00000009842)	BTBD3 (ENSSMAG00000009820) #14	sptlc3 (ENSSMAG00000009789) #16	ism1 (ENSSMAG00000009780) #17	tasp1 (ENSSMAG00000009721) #18	ENSSMAG00000009711 #23	ENSSMAG00000024469 #22	ENSSMAG00000025360	mad2l1bp (ENSSMAG00000009690)	cst3 (ENSSMAG00000009666)	ENSSMAG00000009655	snx5 (ENSSMAG00000009605) #35	rrbp1a (ENSSMAG00000009485) #33	ENSSMAG00000009598 ##32	ENSSMAG00000009447	ENSSMAG00000009420	CAPN11 (ENSSMAG00000009323)	ENSSMAG00000009304	ENSSMAG00000009234	ENSSMAG00000009211	ENSSMAG00000009204	nsmce4a (ENSSMAG00000009185)
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b	ENSGT00390000010094.b
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00440000039029	ENSGT00390000006205.a	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00940000159330.h	ENSGT01100000263524.G.f.a	ENSGT00940000156258.f.a	ENSGT00390000006408	ENSGT00950000182886.b.a.a	ENSGT00390000007214 #9	ENSGT00390000016400 #10	ENSGT00940000166212	ENSGT00940000156461 #14	ENSGT00940000158513 #16	ENSGT00940000159062 #17	ENSGT00950000183045.B #18	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00390000003812	ENSGT00390000002210.c.a	ENSGT00940000154755	ENSGT00950000183133.c.b	ENSGT00390000003349 #36	ENSGT00940000154632 #35	ENSGT00940000158015.k.a #33	ENSGT00950000183000.d ##32	ENSGT00940000154784.D.b.c.b	ENSGT00940000158672.c	ENSGT00390000001121	ENSGT00940000157084.e.b	ENSGT00390000010094.b
Climbing perch	MODERN SPECIES	6	GPATCH11 (ENSATEG00000015556)	HEATR5B (ENSATEG00000015657)	STRN (ENSATEG00000015765)	VIT (ENSATEG00000015883)	ENSATEG00000016185	SPAST (ENSATEG00000016207)	memo1 (ENSATEG00000016244)	srd5a2b (ENSATEG00000016286)	mkks (ENSATEG00000016310) #9	slx4ip (ENSATEG00000026552) #10	jag1b (ENSATEG00000016331)	BTBD3 (ENSATEG00000026592) #14	sptlc3 (ENSATEG00000016434) #16	ism1 (ENSATEG00000016470) #17	tasp1 (ENSATEG00000016489) #18	macrod2 (ENSATEG00000016590) #22	ENSATEG00000016604 #23	KIF16B (ENSATEG00000016614)	mad2l1bp (ENSATEG00000016656)	ENSATEG00000016662	cst3 (ENSATEG00000027967)	si:dkey-76k16.6 (ENSATEG00000028408)	mgme1 (ENSATEG00000016926) #36	snx5 (ENSATEG00000016994) #35	rrbp1a (ENSATEG00000017047) #33	ENSATEG00000026310 ##32	ENSATEG00000017108	CAPN11 (ENSATEG00000017129)	ENSATEG00000017225	ENSATEG00000017241	ENSATEG00000017265
Siamese fighting fish	MODERN SPECIES	6	gpatch11 (ENSBSLG00000007570)	HEATR5B (ENSBSLG00000007591)	STRN (ENSBSLG00000007890)	VIT (ENSBSLG00000008650)	ENSBSLG00000008688	SPAST (ENSBSLG00000008729)	memo1 (ENSBSLG00000008856)	srd5a2b (ENSBSLG00000008888)	mkks (ENSBSLG00000008889) #9	slx4ip (ENSBSLG00000008892) #10	jag1b (ENSBSLG00000009046)	BTBD3 (ENSBSLG00000009660) #14	sptlc3 (ENSBSLG00000009672) #16	ism1 (ENSBSLG00000010371) #17	tasp1 (ENSBSLG00000010381) #18	macrod2 (ENSBSLG00000010476) #22	flrt3 (ENSBSLG00000010483) #23	ENSBSLG00000010486	KIF16B (ENSBSLG00000010497)	mad2l1bp (ENSBSLG00000010509)	ENSBSLG00000010514	EPHX1 (ENSBSLG00000010516)	slc27a1b (ENSBSLG00000010559)	si:dkey-76k16.6 (ENSBSLG00000011374)	mgme1 (ENSBSLG00000011380) #36	snx5 (ENSBSLG00000011778) #35	rrbp1a (ENSBSLG00000012429) #33	ENSBSLG00000012469 ##32	ENSBSLG00000012483	capn1a (ENSBSLG00000012665)	mrpl14 (ENSBSLG00000013302)
Otomorpha	ANCESTRAL SPECIES	110	ENSGT00390000010094.b	ENSGT00940000157084.e.b	ENSGT00390000001121	ENSGT00940000158672.c	ENSGT00940000154784.D.a.a.b.a.b	ENSGT00940000154784.D.b.c.b	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a #33	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00950000183133.c.b	ENSGT00950000183133.c.a	ENSGT00940000154755	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00980000203132	ENSGT00950000183045.B #18	ENSGT00940000159062 #17	ENSGT00940000158513 #16	ENSGT00940000156461 #14	ENSGT00940000166212	ENSGT00390000016400 #10	ENSGT00390000007214 #9	ENSGT00950000182886.b.a.a	ENSGT00390000006408	ENSGT01100000263524.G.f.a	ENSGT00940000159330	ENSGT00510000052164.a	ENSGT00990000204590
Otophysi	ANCESTRAL SPECIES	180	ENSGT00940000159342.b	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00390000001121	ENSGT00940000158672.c	ENSGT00940000154784.D.a.a.b.a.b	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a #33	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00950000183133.c.b	ENSGT00950000183133.c.a	ENSGT00940000154755	ENSGT00390000002210.c.a.n	ENSGT00390000003812	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00980000203132	ENSGT00950000183045.B #18	ENSGT00940000159062 #17	ENSGT00940000158513 #16	ENSGT00940000156461 #14	ENSGT00940000166212	ENSGT00390000016400 #10	ENSGT00390000007214 #9	ENSGT00950000182886.b.a.a	ENSGT00390000006408	ENSGT00390000012017	ENSGT00940000157846.c	ENSGT00390000011433.s.a	ENSGT00390000007723
Characiphysae	ANCESTRAL SPECIES	31	ENSGT00940000159342.b	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00390000001121	ENSGT00940000158672.c	ENSGT00940000154784.D.a.a.b.a.b	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a #33	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00940000154755.kb.b	ENSGT00950000183133.c.b	ENSGT00940000154755.jb	ENSGT00390000002210.c.a.n	ENSGT00390000003812	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000176188	ENSGT00940000158298	ENSGT00390000014679.d.b	ENSGT00940000154800.h	ENSGT00940000154644.jb.b.h	ENSGT00390000014679.d.a	ENSGT00940000159201	ENSGT00950000183576	ENSGT00940000161517.D	ENSGT00940000159639	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00950000183181.A.a	ENSGT00390000000411
Channel catfish	MODERN SPECIES	22	msh6 (ENSIPUG00000018740)	ENSIPUG00000018751	tsnax (ENSIPUG00000018757)	ENSIPUG00000018776	ENSIPUG00000018796	ENSIPUG00000018807	spred2b (ENSIPUG00000018860)	glyat (ENSIPUG00000018900)	ENSIPUG00000018917	si:dkey-76k16.6 (ENSIPUG00000018921)	cyt (ENSIPUG00000018929)	ENSIPUG00000018947	ENSIPUG00000018959	mad2l1bp (ENSIPUG00000018965)	ephx1 (ENSIPUG00000018974)	macrod2 (ENSIPUG00000019017) #22	flrt3 (ENSIPUG00000019079) #23	glo1 (ENSIPUG00000019103)	ENSIPUG00000019114	Btbd9 (ENSIPUG00000019128)	zfand3 (ENSIPUG00000019182)	mdga1 (ENSIPUG00000019210)	ENSIPUG00000019325	LV1 (ENSIPUG00000019329)	ENSIPUG00000019337	zfyve21 (ENSIPUG00000019344)	FAM160B1 (ENSIPUG00000019373)	ablim1a (ENSIPUG00000019434)	dact2 (ENSIPUG00000019514)	eif3l (ENSIPUG00000019522)	SMOC2 (ENSIPUG00000019553)
Characiphysae_b	ANCESTRAL SPECIES	67	ENSGT00940000158284	ENSGT00940000159342.b	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00390000001121	ENSGT00940000158672.c	ENSGT00940000154784.D.a.a.b.a.b	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a #33	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00950000183133.c.b	ENSGT00940000154755.jb	ENSGT00390000002210.c.a.n	ENSGT00390000003812	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000176188	ENSGT00390000002768.b	ENSGT00390000009312.a	ENSGT00940000158298	ENSGT00390000014679.d.b	ENSGT00940000154800.h	ENSGT00390000014679.d.a	ENSGT00940000159201	ENSGT00950000183576	ENSGT00940000161517.D	ENSGT00940000159639	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00950000183181.A.a
Characoidei	ANCESTRAL SPECIES	86	ENSGT00940000158284	ENSGT00940000159342.b	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00390000001121	ENSGT00940000158672.c	ENSGT00940000154784.D.a.a.b.a.b	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a #33	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00950000183133.c.b	ENSGT00940000154755.jb	ENSGT00390000002210.c.a.n	ENSGT00390000003812	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000176188	ENSGT00390000002768.b	ENSGT00390000009312.a	ENSGT00940000158298	ENSGT00390000014679.d.a	ENSGT00940000159201	ENSGT00950000183576.f	ENSGT00940000161517.D	ENSGT00940000159639	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00950000183181.A.a	ENSGT00390000000411	ENSGT00390000018436.a.b
Red-bellied piranha	MODERN SPECIES	790														EPHX1 (ENSPNAG00000026155)	mad2l1bp (ENSPNAG00000026165)	ENSPNAG00000026221 #22	flrt3 (ENSPNAG00000026227) #23	sox9b (ENSPNAG00000026277)
Electric eel	MODERN SPECIES	105																ENSEEEG00000011511 #22	glo1 (ENSEEEG00000011516)	zfand3 (ENSEEEG00000011520)	MDGA1 (ENSEEEG00000011526)	ENSEEEG00000011529	ENSEEEG00000011545	ENSEEEG00000011686	ENSEEEG00000011688	lbh (ENSEEEG00000011689)	lclat1 (ENSEEEG00000011691)	slc30a10 (ENSEEEG00000011694)	ENSEEEG00000011696	ypel5 (ENSEEEG00000011698)	ENSEEEG00000011710	ENSEEEG00000011739	FNDC5 (ENSEEEG00000011774)
Cyprinoidei	ANCESTRAL SPECIES	38	ENSGT00940000154641.B.a.d.a.c	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00390000010349.a.a.a.a	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.a	ENSGT00940000169013	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a #33	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00950000183133.c.b	ENSGT00950000183133.c.a	ENSGT00940000154755	ENSGT00390000002210.c.a.n	ENSGT00390000003812	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.g.b	ENSGT00950000183045.B #18	ENSGT00940000159062 #17	ENSGT00940000158513 #16	ENSGT00940000156461 #14	ENSGT00940000166212	ENSGT00390000016400 #10	ENSGT00390000007214 #9	ENSGT00950000182886.b.a.a	ENSGT00390000006408	ENSGT00390000012017.f	ENSGT00390000012017.e	ENSGT00940000157846.c	ENSGT00390000011433.s.a
Zebrafish	MODERN SPECIES	4	ENSDARG00000067661	ftr81 (ENSDARG00000109055)	ENSDARG00000014246	cfl1l (ENSDARG00000012972) ##32	rrbp1a (ENSDARG00000013763) #33	snx5 (ENSDARG00000020442) #35	ENSDARG00000116199	mgme1 (ENSDARG00000016656) #36	si:dkey-76k16.6 (ENSDARG00000077481)	ENSDARG00000075561	zgc:163030 (ENSDARG00000069192)	cst3 (ENSDARG00000007795)	ENSDARG00000104106	EPHX1 (ENSDARG00000103298)	mad2l1bp (ENSDARG00000104943)	macrod2 (ENSDARG00000032601) #22	flrt3 (ENSDARG00000076895) #23	KIF16B (ENSDARG00000080018)	tasp1 (ENSDARG00000060580) #18	ism1 (ENSDARG00000020541) #17	sptlc3 (ENSDARG00000030743) #16	BTBD3 (ENSDARG00000087517) #14	jag1b (ENSDARG00000013168)	slx4ip (ENSDARG00000039069) #10	mkks (ENSDARG00000016139) #9	srd5a2b (ENSDARG00000039067)	memo1 (ENSDARG00000010823)	ENSDARG00000053386	ENSDARG00000060410	PSME4 (ENSDARG00000087911)	GPR75 (ENSDARG00000098526)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	86	ENSGT00940000154641.B.a.d.a.c.b.a	ENSGT00940000154641.B.a.d.a.c.a.a	ENSGT00390000010349.a.b.db	ENSGT00940000155720.d.a	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.a.a	ENSGT00940000169013.a.b	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a.b #33	ENSGT00940000154632.qb #35	ENSGT00390000003349.t #36	ENSGT00950000183133.c.b	ENSGT00940000154755.mb.b	ENSGT01000000217848	ENSGT00390000002210.c.a.n.f	ENSGT00390000003812.i	ENSGT00940000157404.c.a #22	ENSGT00940000159704.g #23	ENSGT00940000157404.d #22	ENSGT00950000183045.B.j #18	ENSGT00940000159062.c.b #17	ENSGT00940000158513.p #16	ENSGT00940000156461.h #14	ENSGT00940000166212.s.b	ENSGT00390000016400.c #10	ENSGT00390000007214.a #9	ENSGT00950000182886.b.a.a.b	ENSGT00390000006408.yb	ENSGT00390000012017.e.b	ENSGT00940000157846.c.a.a	ENSGT00390000011433.s.a.b	ENSGT00390000007723.e
Goldfish	MODERN SPECIES	4	ENSCARG00000018142	cxcl18a.1 (ENSCARG00000018134)	cxcl12a (ENSCARG00000018125)	ERCC6 (ENSCARG00000018099)	drgx (ENSCARG00000018083)	vstm4a (ENSCARG00000018074)	ENSCARG00000018058	LRRC18 (ENSCARG00000018050)	esr2b (ENSCARG00000018030)	ENSCARG00000017986	ADGRB3 (ENSCARG00000017864)	lmbrd1 (ENSCARG00000017292)	ENSCARG00000017253	ENSCARG00000017240	ENSCARG00000017212	macrod2 (ENSCARG00000017197) #22	tasp1 (ENSCARG00000016866) #18	ism1 (ENSCARG00000016848) #17	sptlc3 (ENSCARG00000016473) #16	BTBD3 (ENSCARG00000016457) #14	ENSCARG00000016449	jag1b (ENSCARG00000015951)	slx4ip (ENSCARG00000015887) #10	mkks (ENSCARG00000015881) #9	srd5a2b (ENSCARG00000015876)	memo1 (ENSCARG00000015855)	ENSCARG00000015827	THBS2 (ENSCARG00000015197)	PSME4 (ENSCARG00000013923)	GPR75 (ENSCARG00000013856)	agpat4 (ENSCARG00000013845)
Cyprininae_a	ANCESTRAL SPECIES	29						ENSGT00940000169013.a.b	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a.b #33	ENSGT00940000154632.qb #35	ENSGT00390000003349.t #36	ENSGT00950000183133.c.b	ENSGT00950000183133.c.a	ENSGT00940000154755.mb.a.a	ENSGT00390000002210.c.a.n.f	ENSGT00390000003812.i	ENSGT00940000157404.c.a #22	ENSGT00940000159704.g #23	ENSGT00940000157404.d #22	ENSGT00950000183045.B.j #18	ENSGT00940000159062.c.b #17	ENSGT00940000158513.p #16	ENSGT00940000156461.h #14	ENSGT00940000166212.s.b	ENSGT00390000016400.c #10	ENSGT00390000007214.a #9	ENSGT00950000182886.b.a.a.b	ENSGT00390000006408.yb	ENSGT00390000012017.e.b	ENSGT00940000157846.c.a.a	ENSGT00390000011433.s.a.b	ENSGT00390000007723.e
Common carp reference	MODERN SPECIES	18	dcdc2b (ENSCCRG00000074677)	tmem234 (ENSCCRG00000010940)	ENSCCRG00000068285	zgc:172120 (ENSCCRG00000010937)	ENSCCRG00000056733	btbd6a (ENSCCRG00000041907)	brf1a (ENSCCRG00000078564)	ENSCCRG00000041896	ENSCCRG00000036600	rrbp1a (ENSCCRG00000055855) #33	snx5 (ENSCCRG00000040698) #35	mgme1 (ENSCCRG00000040661) #36	ENSCCRG00000040655	ENSCCRG00000040649	mad2l1bp (ENSCCRG00000052781)	macrod2 (ENSCCRG00000080476) #22	flrt3 (ENSCCRG00000081794) #23	ENSCCRG00000075666	tasp1 (ENSCCRG00000024736) #18	ism1 (ENSCCRG00000021140) #17	sptlc3 (ENSCCRG00000070477) #16	BTBD3 (ENSCCRG00000074403) #14	jag1b (ENSCCRG00000018272)	slx4ip (ENSCCRG00000078555) #10	mkks (ENSCCRG00000023678) #9	srd5a2b (ENSCCRG00000026771)	memo1 (ENSCCRG00000026739)	ENSCCRG00000026727	ENSCCRG00000015527	PSME4 (ENSCCRG00000008833)	ENSCCRG00000056325
Cyprininae	ANCESTRAL SPECIES	4	ENSGT00500000044870.b.c	ENSGT00940000164359.a.a	ENSGT00940000166919	ENSGT00940000154641.B.a.d.a.c.a.b	ENSGT00940000155720.d.b	ENSGT00390000010349.a.b.eb	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.a.b	ENSGT00940000169013.a.a	ENSGT00940000158015.k.a.a #33	ENSGT00940000154632.pb #35	ENSGT00390000003349.s #36	ENSGT00950000183133.c.a	ENSGT00940000154755.mb.a.a	ENSGT00390000002210.c.a.n.e	ENSGT00390000003812.j.a	ENSGT00940000157404.c.b #22	ENSGT00940000159704.h #23	ENSGT00940000162838.g.b	ENSGT00950000183045.B.i #18	ENSGT00940000159062.c.a #17	ENSGT00940000158513.o #16	ENSGT00940000156461.g #14	ENSGT00940000166212.s.a	ENSGT00390000016400.d #10	ENSGT00390000007214.b #9	ENSGT00950000182886.b.a.a.a	ENSGT00390000006408.`c	ENSGT00390000012017.e.a	ENSGT00940000157846.c.a.b	ENSGT00390000011433.s.a.a	ENSGT00390000007723.f
Cyprininae_a	ANCESTRAL SPECIES	167														ENSGT00390000002210.c.a.n.e.a	ENSGT00390000003812.j.a	ENSGT00940000157404.c.b #22	ENSGT00940000159704.h #23	ENSGT00940000162838.g.b	ENSGT00950000183045.B.i #18	ENSGT00940000159062.c.a #17	ENSGT00940000158513.o #16	ENSGT00940000156461.g #14	ENSGT00940000166212.s.a	ENSGT00390000016400.d #10	ENSGT00950000182886.b.a.a.a	ENSGT00390000006408.`c	ENSGT00390000012017.e.a.a	ENSGT00390000012017.f	ENSGT00940000157846.c.a.b	ENSGT00390000011433.s.a.a	ENSGT00390000007723.f
Common carp reference	MODERN SPECIES	48	tmem234 (ENSCCRG00000011731)	ENSCCRG00000011730	zgc:172120 (ENSCCRG00000011728)	brf1a (ENSCCRG00000048813)	btbd6a (ENSCCRG00000048823)	ENSCCRG00000048828	ENSCCRG00000014029	ENSCCRG00000062730	cfl1l (ENSCCRG00000028989) ##32	rrbp1a (ENSCCRG00000053909) #33	snx5 (ENSCCRG00000002999) #35	si:dkey-76k16.6 (ENSCCRG00000003264)	ENSCCRG00000065062	ENSCCRG00000052398	mad2l1bp (ENSCCRG00000061912)	macrod2 (ENSCCRG00000067480) #22	flrt3 (ENSCCRG00000076283) #23	tasp1 (ENSCCRG00000059408) #18	KIF16B (ENSCCRG00000024733)	ism1 (ENSCCRG00000024737) #17	sptlc3 (ENSCCRG00000021300) #16	BTBD3 (ENSCCRG00000069327) #14	jag1b (ENSCCRG00000023729)	srd5a2b (ENSCCRG00000023679)	memo1 (ENSCCRG00000075241)	ENSCCRG00000063034	ENSCCRG00000058068	ENSCCRG00000031090	PSME4 (ENSCCRG00000031275)	ENSCCRG00000053798	erlec1 (ENSCCRG00000034613)
Goldfish	MODERN SPECIES	31	ENSCARG00000047809	zgc:172120 (ENSCARG00000047823)	brf1a (ENSCARG00000047867)	btbd6a (ENSCARG00000047948)	ENSCARG00000047990	ENSCARG00000048059	cfl1l (ENSCARG00000048314) ##32	rrbp1a (ENSCARG00000048346) #33	snx5 (ENSCARG00000048450) #35	mgme1 (ENSCARG00000049046) #36	ENSCARG00000049071	ENSCARG00000049304	EPHX1 (ENSCARG00000049361)	mad2l1bp (ENSCARG00000049409)	mad2l1bp (ENSCARG00000049428)	macrod2 (ENSCARG00000049564) #22	flrt3 (ENSCARG00000049596) #23	KIF16B (ENSCARG00000049616)	tasp1 (ENSCARG00000049659) #18	ism1 (ENSCARG00000050343) #17	sptlc3 (ENSCARG00000050374) #16	BTBD3 (ENSCARG00000050841) #14	jag1b (ENSCARG00000050888)	slx4ip (ENSCARG00000051581) #10	mkks (ENSCARG00000051601) #9	srd5a2b (ENSCARG00000051672)	memo1 (ENSCARG00000051685)	ENSCARG00000051770	ENSCARG00000051875	PSME4 (ENSCARG00000053232)	GPR75 (ENSCARG00000053908)
Cyprininae	ANCESTRAL SPECIES	86	ENSGT00390000010349.a.b.db	ENSGT00940000155720.d.a	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.a.a	ENSGT00940000169013.a.b	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a.b #33	ENSGT00940000154632.qb #35	ENSGT00390000003349.t #36	ENSGT00950000183133.c.b	ENSGT00940000154755.mb.b	ENSGT01000000217848	ENSGT00390000002210.c.a.n.f	ENSGT00390000003812.i	ENSGT00940000157404.c.a #22	ENSGT00940000159704.g #23	ENSGT00940000157404.d #22	ENSGT00950000183045.B.j #18	ENSGT00940000159062.c.b #17	ENSGT00940000158513.p #16	ENSGT00940000156461.h #14	ENSGT00940000166212.s.b	ENSGT00390000016400.c #10	ENSGT00390000007214.a #9	ENSGT00950000182886.b.a.a.b	ENSGT00390000006408.yb	ENSGT00390000012017.e.b	ENSGT00940000157846.c.a.a	ENSGT00390000011433.s.a.b	ENSGT00390000007723.e	ENSGT00530000063603.B.c	ENSGT00950000182836.b.b.b.b.c
Cyprininae_a	ANCESTRAL SPECIES	29				ENSGT00940000169013.a.b	ENSGT00950000183000.d ##32	ENSGT00940000158015.k.a.b #33	ENSGT00940000154632.qb #35	ENSGT00390000003349.t #36	ENSGT00950000183133.c.b	ENSGT00950000183133.c.a	ENSGT00940000154755.mb.a.a	ENSGT00390000002210.c.a.n.f	ENSGT00390000003812.i	ENSGT00940000157404.c.a #22	ENSGT00940000159704.g #23	ENSGT00940000157404.d #22	ENSGT00950000183045.B.j #18	ENSGT00940000159062.c.b #17	ENSGT00940000158513.p #16	ENSGT00940000156461.h #14	ENSGT00940000166212.s.b	ENSGT00390000016400.c #10	ENSGT00390000007214.a #9	ENSGT00950000182886.b.a.a.b	ENSGT00390000006408.yb	ENSGT00390000012017.e.b	ENSGT00940000157846.c.a.a	ENSGT00390000011433.s.a.b	ENSGT00390000007723.e	ENSGT00530000063603.B.c	ENSGT00950000182836.b.b.b.b.c
Golden-line barbel	MODERN SPECIES	70	oip5 (ENSSGRG00000036797)	tmem39b (ENSSGRG00000036799)	ccdc28b (ENSSGRG00000036832)	zgc:172120 (ENSSGRG00000036837)	brf1a (ENSSGRG00000036838)	btbd6a (ENSSGRG00000036840)	ENSSGRG00000036865	rrbp1a (ENSSGRG00000037558) #33	snx5 (ENSSGRG00000037592) #35	mgme1 (ENSSGRG00000038142) #36	ENSSGRG00000038149	ENSSGRG00000038150	EPHX1 (ENSSGRG00000038152)	mad2l1bp (ENSSGRG00000038177)	flrt3 (ENSSGRG00000038180) #23	macrod2 (ENSSGRG00000038181) #22	tasp1 (ENSSGRG00000038183) #18	sptlc3 (ENSSGRG00000038203) #16	BTBD3 (ENSSGRG00000038206) #14	jag1b (ENSSGRG00000038212)	slx4ip (ENSSGRG00000038363) #10	mkks (ENSSGRG00000038365) #9	srd5a2b (ENSSGRG00000038367)	memo1 (ENSSGRG00000038384)	ENSSGRG00000038541	ENSSGRG00000038545
Clupeiformes	ANCESTRAL SPECIES	193									ENSGT00940000158015.k.a #33	ENSGT00940000154632 #35	ENSGT00390000003349 #36	ENSGT00950000183133.c.b	ENSGT00940000154755	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000157404 #22	ENSGT00940000159704 #23	ENSGT00940000162838.h	ENSGT00950000183045.B #18	ENSGT00940000159062 #17	ENSGT00940000158513 #16	ENSGT00940000156461 #14	ENSGT00940000166212	ENSGT00940000173161	ENSGT00390000012785	ENSGT00950000183059.b.a.b.q	ENSGT00950000183095.a.b.a.b.b.b	ENSGT00390000006205.a	ENSGT00440000039029	ENSGT00940000160736	ENSGT00940000163863
Atlantic herring	MODERN SPECIES	4	EML6 (ENSCHAG00000023182)	SPTBN1 (ENSCHAG00000020514)	ACYP2 (ENSCHAG00000020356)	ENSCHAG00000020342	slc30a6 (ENSCHAG00000020058)	ENSCHAG00000020035	SULT6B1 (ENSCHAG00000019999)	ACOXL (ENSCHAG00000019726)	ENSCHAG00000019697	ANAPC1 (ENSCHAG00000019502)	si:dkey-76k16.6 (ENSCHAG00000019464)	mgme1 (ENSCHAG00000019455) #36	snx5 (ENSCHAG00000019163) #35	rrbp1a (ENSCHAG00000019098) #33	flrt3 (ENSCHAG00000019089) #23	macrod2 (ENSCHAG00000019005) #22	ENSCHAG00000018990	ENSCHAG00000018956	ENSCHAG00000018943	tasp1 (ENSCHAG00000018870) #18	ism1 (ENSCHAG00000018813) #17	sptlc3 (ENSCHAG00000017627) #16	BTBD3 (ENSCHAG00000017580) #14	jag1b (ENSCHAG00000015232)	slx4ip (ENSCHAG00000015082) #10	ENSCHAG00000015067	cfap36 (ENSCHAG00000015041)	PLD5 (ENSCHAG00000015023)	STRN (ENSCHAG00000014228)	HEATR5B (ENSCHAG00000011196)	gpatch11 (ENSCHAG00000011023)
Denticle herring	MODERN SPECIES	18	capn1a (ENSDCDG00000033520)	capn2a (ENSDCDG00000034694)	ENSDCDG00000035038	cfl1l (ENSDCDG00000035231) ##32	snx5 (ENSDCDG00000035234) #35	mgme1 (ENSDCDG00000035238) #36	si:dkey-76k16.6 (ENSDCDG00000035239)	cst3 (ENSDCDG00000035241)	EPHX1 (ENSDCDG00000035250)	EPHX1 (ENSDCDG00000035245)	mad2l1bp (ENSDCDG00000035252)	snx5 (ENSDCDG00000035253) #35	mgme1 (ENSDCDG00000035255) #36	si:dkey-76k16.6 (ENSDCDG00000002901)	mad2l1bp (ENSDCDG00000002914)	macrod2 (ENSDCDG00000002979) #22	flrt3 (ENSDCDG00000003001) #23	ENSDCDG00000003013	tasp1 (ENSDCDG00000003063) #18	ism1 (ENSDCDG00000003116) #17	ENSDCDG00000003123	sptlc3 (ENSDCDG00000003192) #16	BTBD3 (ENSDCDG00000003560) #14	jag1b (ENSDCDG00000003629)	ENSDCDG00000004592	ENSDCDG00000004596	cfap36 (ENSDCDG00000004605)	PLD5 (ENSDCDG00000004612)	STRN (ENSDCDG00000004699)	HEATR5B (ENSDCDG00000007821)	gpatch11 (ENSDCDG00000017143)