Bovidae	ANCESTRAL SPECIES	2	ENSGT00950000182887.C.a.a.b	ENSGT00730000111225 #7	ENSGT00940000162807 #8	ENSGT00940000163215 #10	ENSGT00390000004322.a.b #11	ENSGT00940000155191.b #12	ENSGT00390000009664 #13	ENSGT00390000014721 #14	ENSGT00940000159844 #15	ENSGT00940000159372 #16	ENSGT00940000162017 #17	ENSGT00940000162036 #18	ENSGT00940000162310.b #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b #24	ENSGT00940000157496 #25	ENSGT01040000240503.B #26	ENSGT00390000009210 #27	ENSGT00940000160672 #28	ENSGT00940000160688 #29	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b	ENSGT00390000004049 #31	ENSGT00940000159866 #32	ENSGT00940000163910 #33	ENSGT00940000160289 #34	ENSGT00940000162799	ENSGT00390000018162 #35
Caprinae	ANCESTRAL SPECIES	1	ENSGT00950000182887.C.a.a.b	ENSGT00730000111225 #7	ENSGT00940000162807 #8	ENSGT00940000163215 #10	ENSGT00390000004322.a.b #11	ENSGT00940000155191.b #12	ENSGT00390000009664 #13	ENSGT00390000014721 #14	ENSGT00940000159844 #15	ENSGT00940000159372 #16	ENSGT00940000162017 #17	ENSGT00940000162036 #18	ENSGT00940000162310.b #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b #24	ENSGT00940000157496 #25	ENSGT01040000240503.B #26	ENSGT00390000009210 #27	ENSGT00940000160672 #28	ENSGT00940000160688 #29	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b	ENSGT00390000004049 #31	ENSGT00940000159866 #32	ENSGT00940000163910 #33	ENSGT00940000160289 #34	ENSGT00390000018162 #35	ENSGT00940000162159 #36
Rambouillet Sheep	MODERN SPECIES	2	PELP1 (ENSOARG00020024393) #7	ALOX15 (ENSOARG00020024320) #8	ENSOARG00020024303 #9	ENSOARG00020021761 #10	ENSOARG00020021573 #11	ALOX12 (ENSOARG00020021553) #12	RNASEK (ENSOARG00020021492) #13	C17orf49 (ENSOARG00020021294) #14	BCL6B (ENSOARG00020021221) #15	SLC16A13 (ENSOARG00020021188) #16	SLC16A11 (ENSOARG00020021137) #17	CLEC10A (ENSOARG00020021092) #18	ASGR2 (ENSOARG00020021046) #19	ENSOARG00020021001 #20	DLG4 (ENSOARG00020019051) #21	ACADVL (ENSOARG00020018512) #22	DVL2 (ENSOARG00020018284) #23	PHF23 (ENSOARG00020018070) #24	GABARAP (ENSOARG00020017939) #25	CTDNEP1 (ENSOARG00020017866) #26	ELP5 (ENSOARG00020017795) #27	CLDN7 (ENSOARG00020017686) #28	SLC2A4 (ENSOARG00020017448) #29	YBX2 (ENSOARG00020017354) #30	GPS2 (ENSOARG00020017230) #31	NEURL4 (ENSOARG00020016228) #32	ENSOARG00020015367 #33	ACAP1 (ENSOARG00020015243) #34	TMEM95 (ENSOARG00020015173) #35	TNK1 (ENSOARG00020015110) #36	PLSCR3 (ENSOARG00020015038) #37
Goat	MODERN SPECIES	10	ENSCHIG00000011068	ARRB2 (ENSCHIG00000015924)	PELP1 (ENSCHIG00000026719) #7	ALOX15 (ENSCHIG00000025642) #8	ENSCHIG00000018052 #10	ENSCHIG00000010838	ALOX12 (ENSCHIG00000025520) #12	RNASEK (ENSCHIG00000009505) #13	C17orf49 (ENSCHIG00000019869) #14	BCL6B (ENSCHIG00000013253) #15	SLC16A13 (ENSCHIG00000019049) #16	SLC16A11 (ENSCHIG00000019140) #17	ASGR2 (ENSCHIG00000003690) #19	ASGR1 (ENSCHIG00000016569) #20	DLG4 (ENSCHIG00000009974) #21	ACADVL (ENSCHIG00000025328) #22	DVL2 (ENSCHIG00000025716) #23	PHF23 (ENSCHIG00000007385) #24	GABARAP (ENSCHIG00000021470) #25	CTDNEP1 (ENSCHIG00000006144) #26	ELP5 (ENSCHIG00000010521) #27	CLDN7 (ENSCHIG00000025376) #28	SLC2A4 (ENSCHIG00000020405) #29	YBX2 (ENSCHIG00000016407) #30	ENSCHIG00000025365	GPS2 (ENSCHIG00000004094) #31	NEURL4 (ENSCHIG00000018834) #32	ENSCHIG00000024951 #33	ACAP1 (ENSCHIG00000017749) #34	TMEM95 (ENSCHIG00000024443) #35	TNK1 (ENSCHIG00000008836) #36
Bovinae	ANCESTRAL SPECIES		ENSGT00950000182887.C.a.a.b	ENSGT00730000111225 #7	ENSGT00940000162807 #8	ENSGT00940000163215 #10	ENSGT00390000004322.a.b #11	ENSGT00940000155191.b #12	ENSGT00390000009664 #13	ENSGT00390000014721 #14	ENSGT00940000159844 #15	ENSGT00940000159372 #16	ENSGT00940000162017 #17	ENSGT00940000162036 #18	ENSGT00940000162310.b #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b #24	ENSGT00940000157496 #25	ENSGT01040000240503.B.cb.a #26	ENSGT00390000009210 #27	ENSGT00940000160672 #28	ENSGT00940000160688 #29	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b	ENSGT00390000004049 #31	ENSGT00940000159866 #32	ENSGT00940000163910 #33	ENSGT00940000160289 #34	ENSGT00940000162799	ENSGT00390000018162 #35
American bison	MODERN SPECIES	3166	ARRB2 (ENSBBBG00000014204)	PELP1 (ENSBBBG00000014246) #7	ALOX15 (ENSBBBG00000014284) #8	ENSBBBG00000003249 #10	ENSBBBG00000014314 #11	ALOX12 (ENSBBBG00000003259) #12	RNASEK (ENSBBBG00000014328) #13	C17orf49 (ENSBBBG00000014332) #14	BCL6B (ENSBBBG00000014349) #15	SLC16A13 (ENSBBBG00000014357) #16	SLC16A11 (ENSBBBG00000014363) #17	CLEC10A (ENSBBBG00000003285) #18	ASGR2 (ENSBBBG00000003294) #19	ENSBBBG00000003298 #20	DLG4 (ENSBBBG00000014616) #21	ACADVL (ENSBBBG00000014766) #22	DVL2 (ENSBBBG00000014849) #23	PHF23 (ENSBBBG00000003661) #24	GABARAP (ENSBBBG00000003665) #25	ENSBBBG00000003673 #26	ELP5 (ENSBBBG00000001242) #27	ENSBBBG00000001226 #28	SLC2A4 (ENSBBBG00000001170) #29	YBX2 (ENSBBBG00000001150) #30	ENSBBBG00000001095	GPS2 (ENSBBBG00000001059) #31	NEURL4 (ENSBBBG00000000855) #32	ENSBBBG00000003626 #33	ACAP1 (ENSBBBG00000015001) #34	KCTD11 (ENSBBBG00000015018)	TMEM95 (ENSBBBG00000000804) #35
Bos	ANCESTRAL SPECIES	1	ENSGT00950000182887.C.a.a.b	ENSGT00730000111225 #7	ENSGT00940000162807 #8	ENSGT00940000163215 #10	ENSGT00390000004322.a.b #11	ENSGT00940000155191.b #12	ENSGT00390000009664 #13	ENSGT00390000014721 #14	ENSGT00940000159844 #15	ENSGT00940000159372 #16	ENSGT00940000162017 #17	ENSGT00940000162036 #18	ENSGT00940000162310.b #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b #24	ENSGT00940000157496 #25	ENSGT01040000240503.B.cb.a #26	ENSGT00390000009210.g #27	ENSGT00940000160672 #28	ENSGT00940000160688 #29	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b	ENSGT00390000004049 #31	ENSGT00940000159866 #32	ENSGT00940000163910 #33	ENSGT00940000160289 #34	ENSGT00940000162799	ENSGT00390000018162 #35
Bos_b	ANCESTRAL SPECIES	15	ENSGT00950000182887.C.a.a.b	ENSGT00730000111225 #7	ENSGT00940000162807 #8	ENSGT00940000163215 #10	ENSGT00390000004322.a.b #11	ENSGT00940000155191.b #12	ENSGT00390000009664 #13	ENSGT00390000014721 #14	ENSGT00940000159844 #15	ENSGT00940000159372 #16	ENSGT00940000162017 #17	ENSGT00940000162036 #18	ENSGT00940000162310.b #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b #24	ENSGT00940000157496 #25	ENSGT01040000240503.B.cb.a #26	ENSGT00390000009210.g #27	ENSGT00940000160672 #28	ENSGT00940000160688 #29	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b	ENSGT00390000004049 #31	ENSGT00940000159866 #32	ENSGT00940000163910 #33	ENSGT00940000160289 #34	ENSGT00940000162799	ENSGT00390000018162 #35
Cow	MODERN SPECIES	10	PELP1 (ENSBTAG00000018315) #7	ARRB2 (ENSBTAG00000035587)	ALOX15 (ENSBTAG00000011990) #8	ALOX12E (ENSBTAG00000031933) #10	ENSBTAG00000053786 #11	ALOX12 (ENSBTAG00000021933) #12	RNASEK (ENSBTAG00000021932) #13	C19H17orf49 (ENSBTAG00000021931) #14	BCL6B (ENSBTAG00000020854) #15	SLC16A13 (ENSBTAG00000020853) #16	SLC16A11 (ENSBTAG00000020852) #17	CLEC10A (ENSBTAG00000017895) #18	ASGR2 (ENSBTAG00000025101) #19	ASGR1 (ENSBTAG00000012071) #20	DLG4 (ENSBTAG00000002564) #21	ACADVL (ENSBTAG00000003072) #22	DVL2 (ENSBTAG00000003075) #23	PHF23 (ENSBTAG00000014881) #24	GABARAP (ENSBTAG00000014883) #25	CTDNEP1 (ENSBTAG00000019443) #26	ELP5 (ENSBTAG00000019446) #27	CLDN7 (ENSBTAG00000019448) #28	SLC2A4 (ENSBTAG00000009190) #29	YBX2 (ENSBTAG00000009126) #30	EIF5A (ENSBTAG00000002018)	GPS2 (ENSBTAG00000010513) #31	NEURL4 (ENSBTAG00000010519) #32	ENSBTAG00000045892 #33	KCTD11 (ENSBTAG00000010532) #34	TMEM95 (ENSBTAG00000052395) #35	TNK1 (ENSBTAG00000017739) #36
Hybrid Bos Indicus	MODERN SPECIES	10	ENSBIXG00005027893	MED11 (ENSBIXG00005027870)	PELP1 (ENSBIXG00005027839) #7	ARRB2 (ENSBIXG00005027744)	ALOX15 (ENSBIXG00005027670) #8	ENSBIXG00005027412 #10	ALOX12 (ENSBIXG00005026201) #12	C17orf49 (ENSBIXG00005026070) #14	BCL6B (ENSBIXG00005025984) #15	SLC16A13 (ENSBIXG00005025912) #16	SLC16A11 (ENSBIXG00005025874) #17	CLEC10A (ENSBIXG00005025845) #18	ASGR2 (ENSBIXG00005025811) #19	ASGR1 (ENSBIXG00005025712) #20	DLG4 (ENSBIXG00005025633) #21	ACADVL (ENSBIXG00005024981) #22	DVL2 (ENSBIXG00005024794) #23	PHF23 (ENSBIXG00005024750) #24	GABARAP (ENSBIXG00005024650) #25	CTDNEP1 (ENSBIXG00005024608) #26	SLC2A4 (ENSBIXG00005004176) #29	CLDN7 (ENSBIXG00005024167) #28	YBX2 (ENSBIXG00005024122) #30	ENSBIXG00005024068	GPS2 (ENSBIXG00005023970) #31	NEURL4 (ENSBIXG00005023902) #32	ACAP1 (ENSBIXG00005023621) #34	ENSBIXG00005007232 #33	KCTD11 (ENSBIXG00005023396)	TMEM95 (ENSBIXG00005023385) #35	TNK1 (ENSBIXG00005023345) #36
Bos_a	ANCESTRAL SPECIES		ENSGT00950000182887.C.a.a.b	ENSGT00730000111225 #7	ENSGT00940000162807 #8	ENSGT00940000163215 #10	ENSGT00390000004322.a.b #11	ENSGT00940000155191.b #12	ENSGT00390000009664 #13	ENSGT00390000014721 #14	ENSGT00940000159844 #15	ENSGT00940000159372 #16	ENSGT00940000162017 #17	ENSGT00940000162036 #18	ENSGT00940000162310.b #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b #24	ENSGT00940000157496 #25	ENSGT01040000240503.B.cb.a #26	ENSGT00390000009210.g #27	ENSGT00390000009210.h #27	ENSGT00940000160672 #28	ENSGT00940000160688 #29	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b	ENSGT00390000004049 #31	ENSGT00940000159866 #32	ENSGT00940000163910 #33	ENSGT00940000160289 #34	ENSGT00940000162799
Domestic yak	MODERN SPECIES	10	ARRB2 (ENSBGRG00000025530)	PELP1 (ENSBGRG00000025469) #7	ENSBGRG00000025459	ALOX15 (ENSBGRG00000025402) #8	ENSBGRG00000024892 #10	ALOX12 (ENSBGRG00000024812) #12	RNASEK (ENSBGRG00000024780) #13	C17orf49 (ENSBGRG00000024751) #14	BCL6B (ENSBGRG00000024699) #15	SLC16A13 (ENSBGRG00000024689) #16	SLC16A11 (ENSBGRG00000024648) #17	CLEC10A (ENSBGRG00000024558) #18	ASGR2 (ENSBGRG00000024459) #19	ASGR1 (ENSBGRG00000024416) #20	DLG4 (ENSBGRG00000023062) #21	ACADVL (ENSBGRG00000022258) #22	DVL2 (ENSBGRG00000022017) #23	PHF23 (ENSBGRG00000021863) #24	GABARAP (ENSBGRG00000021792) #25	ENSBGRG00000021678 #26	ENSBGRG00000021626 #27	CLDN7 (ENSBGRG00000021527) #28	SLC2A4 (ENSBGRG00000021445) #29	YBX2 (ENSBGRG00000021388) #30	ENSBGRG00000021275	GPS2 (ENSBGRG00000021162) #31	NEURL4 (ENSBGRG00000020466) #32	ENSBGRG00000020404 #33	ACAP1 (ENSBGRG00000020229) #34	TMEM95 (ENSBGRG00000020097) #35	TNK1 (ENSBGRG00000019860) #36
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	286																ENSBMUG00000007006 #22	DVL2 (ENSBMUG00000006989) #23	PHF23 (ENSBMUG00000006921) #24	GABARAP (ENSBMUG00000006873) #25	CTDNEP1 (ENSBMUG00000006861) #26	ELP5 (ENSBMUG00000006843) #27	CLDN7 (ENSBMUG00000006825) #28	SLC2A4 (ENSBMUG00000006799) #29	YBX2 (ENSBMUG00000006793) #30	ENSBMUG00000006766	GPS2 (ENSBMUG00000006753) #31	NEURL4 (ENSBMUG00000006717) #32	ENSBMUG00000006688 #33	ENSBMUG00000006684 #33	ACAP1 (ENSBMUG00000006676) #34	KCTD11 (ENSBMUG00000006660)
Wild yak	MODERN SPECIES	1865	ARRB2 (ENSBMUG00000004895)	PELP1 (ENSBMUG00000004821) #7	ALOX15 (ENSBMUG00000004790) #8	ENSBMUG00000004768 #10	ENSBMUG00000004731 #11	ALOX12 (ENSBMUG00000004714) #12	RNASEK (ENSBMUG00000004694) #13	C17orf49 (ENSBMUG00000004676) #14	BCL6B (ENSBMUG00000004615) #15	SLC16A13 (ENSBMUG00000004604) #16	SLC16A11 (ENSBMUG00000004593) #17	CLEC10A (ENSBMUG00000004573) #18	ASGR2 (ENSBMUG00000004547) #19	ASGR1 (ENSBMUG00000004530) #20	DLG4 (ENSBMUG00000004476) #21	ENSBMUG00000004349 #22