Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000002148	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b	ENSGT00730000111225	ENSGT00940000163215 #7	ENSGT00940000155191.b #14	ENSGT00390000009664 #13	ENSGT00390000014721 #12	ENSGT00940000159844 #11	ENSGT00940000159372	ENSGT00940000162017 #10	ENSGT00940000162036 #18	ENSGT00940000162310 #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b	ENSGT00940000157496 #24	ENSGT01040000240503.B #25	ENSGT00390000009210 #26	ENSGT00940000160672 #27	ENSGT00940000160688 #28	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b #29	ENSGT00390000004049 #31	ENSGT00940000159866	ENSGT00940000163910 #32	ENSGT00940000160289	ENSGT00940000162799 #33	ENSGT00390000018162
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000013848 #7	ENSHGLG00000047766 #8	ENSHGLG00000040120 #9	ENSHGLG00000012038 #10	BCL6B (ENSHGLG00000013098) #11	C17orf49 (ENSHGLG00000009897) #12	RNASEK (ENSHGLG00000012296) #13	ENSHGLG00000010750 #14	ENSHGLG00000010039 #15	ENSHGLG00000045230 #16	ENSHGLG00000039896 #17	ENSHGLG00000034256 #18	ENSHGLG00000009539 #19	ASGR1 (ENSHGLG00000011616) #20	DLG4 (ENSHGLG00000010073) #21	ACADVL (ENSHGLG00000011018) #22	DVL2 (ENSHGLG00000009952) #23	GABARAP (ENSHGLG00000037772) #24	CTDNEP1 (ENSHGLG00000016839) #25	ELP5 (ENSHGLG00000041587) #26	CLDN7 (ENSHGLG00000011140) #27	SLC2A4 (ENSHGLG00000013185) #28	ENSHGLG00000044131 #29	ENSHGLG00000014186 #30	GPS2 (ENSHGLG00000011192) #31	ENSHGLG00000018261 #32	KCTD11 (ENSHGLG00000047152) #33	PLSCR3 (ENSHGLG00000019015) #34	TMEM256 (ENSHGLG00000018691) #35	NLGN2 (ENSHGLG00000041822) #36	SPEM2 (ENSHGLG00000009650) #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000002148	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b	ENSGT00730000111225	ENSGT00940000163215 #7	ENSGT00940000155191.b #14	ENSGT00390000009664 #13	ENSGT00390000014721 #12	ENSGT00940000159844 #11	ENSGT00940000159372	ENSGT00940000162017 #10	ENSGT00940000162036 #18	ENSGT00940000162310 #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b	ENSGT00940000157496 #24	ENSGT01040000240503.B #25	ENSGT00390000009210 #26	ENSGT00940000160672 #27	ENSGT00940000160688 #28	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b #29	ENSGT00390000004049 #31	ENSGT00940000159866	ENSGT00940000163910 #32	ENSGT00940000160289	ENSGT00940000162799 #33	ENSGT00390000018162
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00390000002148	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b	ENSGT00730000111225	ENSGT00940000163215 #7	ENSGT00940000155191.b #14	ENSGT00390000009664 #13	ENSGT00390000014721 #12	ENSGT00940000159844 #11	ENSGT00940000159372	ENSGT00940000162017 #10	ENSGT00940000162036 #18	ENSGT00940000162310 #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b	ENSGT00940000157496 #24	ENSGT01040000240503.B #25	ENSGT00390000009210 #26	ENSGT00940000160672 #27	ENSGT00940000160688 #28	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b #29	ENSGT00390000004049 #31	ENSGT00940000159866	ENSGT00940000163910 #32	ENSGT00940000160289	ENSGT00940000162799 #33	ENSGT00390000018162
Degu	MODERN SPECIES	139	ENSODEG00000017890 #7	ENSODEG00000017037	ALOX12 (ENSODEG00000017256) #14	RNASEK (ENSODEG00000017378) #13	ENSODEG00000017485 #12	BCL6B (ENSODEG00000017360) #11	SLC16A13 (ENSODEG00000017767)	SLC16A11 (ENSODEG00000017518) #10	ENSODEG00000017420	CLEC10A (ENSODEG00000017450) #18	ENSODEG00000017527	ASGR2 (ENSODEG00000017289) #19	ENSODEG00000020478	ASGR1 (ENSODEG00000017268) #20	DLG4 (ENSODEG00000017252) #21	ACADVL (ENSODEG00000017418) #22	DVL2 (ENSODEG00000017448) #23	PHF23 (ENSODEG00000017333)	GABARAP (ENSODEG00000017476) #24	ENSODEG00000017490 #25	ELP5 (ENSODEG00000017304) #26	CLDN7 (ENSODEG00000017387) #27	ENSODEG00000020514	SLC2A4 (ENSODEG00000017582) #28	YBX2 (ENSODEG00000017530) #30	ENSODEG00000017377 #29	GPS2 (ENSODEG00000017752) #31	NEURL4 (ENSODEG00000017430)	ACAP1 (ENSODEG00000017479)	KCTD11 (ENSODEG00000020512) #33	TMEM95 (ENSODEG00000017467)
Long-tailed chinchilla	MODERN SPECIES	174	ENSCLAG00000007478	MED11 (ENSCLAG00000010821)	ARRB2 (ENSCLAG00000011239)	PELP1 (ENSCLAG00000009775)	ENSCLAG00000008230 #7	ALOX12 (ENSCLAG00000009075) #14	RNASEK (ENSCLAG00000008824) #13	C17orf49 (ENSCLAG00000009875) #12	BCL6B (ENSCLAG00000014925) #11	SLC16A13 (ENSCLAG00000013278)	SLC16A11 (ENSCLAG00000010002) #10	CLEC10A (ENSCLAG00000007810) #18	ASGR2 (ENSCLAG00000007744) #19	ASGR1 (ENSCLAG00000012374) #20	DLG4 (ENSCLAG00000010331) #21	ACADVL (ENSCLAG00000009521) #22	DVL2 (ENSCLAG00000008610) #23	PHF23 (ENSCLAG00000007184)	GABARAP (ENSCLAG00000007883) #24	CTDNEP1 (ENSCLAG00000011085) #25	CLDN7 (ENSCLAG00000015583) #27	ELP5 (ENSCLAG00000014750) #26	SLC2A4 (ENSCLAG00000014647) #28	YBX2 (ENSCLAG00000010306) #30	ENSCLAG00000013712 #29	GPS2 (ENSCLAG00000012750) #31	NEURL4 (ENSCLAG00000014798)	ENSCLAG00000013536 #32	ACAP1 (ENSCLAG00000011835)	TMEM95 (ENSCLAG00000013396)	TNK1 (ENSCLAG00000012522)
Guinea pig	MODERN SPECIES	61	ENSCPOG00000032022	MED11 (ENSCPOG00000035175)	ARRB2 (ENSCPOG00000032406)	PELP1 (ENSCPOG00000000208)	ENSCPOG00000025306 #7	ALOX12 (ENSCPOG00000004058) #14	RNASEK (ENSCPOG00000004064) #13	C17orf49 (ENSCPOG00000004065) #12	BCL6B (ENSCPOG00000004066) #11	SLC16A11 (ENSCPOG00000005851) #10	SLC16A13 (ENSCPOG00000030718)	ENSCPOG00000009682 #18	ASGR2 (ENSCPOG00000039341) #19	ASGR1 (ENSCPOG00000009813) #20	DLG4 (ENSCPOG00000020815) #21	ACADVL (ENSCPOG00000020114) #22	DVL2 (ENSCPOG00000023401) #23	PHF23 (ENSCPOG00000033111)	ENSCPOG00000012853 #24	CTDNEP1 (ENSCPOG00000037721) #25	ELP5 (ENSCPOG00000032736) #26	CLDN7 (ENSCPOG00000020951) #27	SLC2A4 (ENSCPOG00000031830) #28	YBX2 (ENSCPOG00000009543) #30	ENSCPOG00000038013 #29	GPS2 (ENSCPOG00000035566) #31	NEURL4 (ENSCPOG00000009550)	ENSCPOG00000021214 #32	ACAP1 (ENSCPOG00000009885)	TMEM95 (ENSCPOG00000033494)	TNK1 (ENSCPOG00000009564)