Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000002148 #7	ENSGT00390000010184 #8	ENSGT00950000182887.C.a.a.b #9	ENSGT00730000111225 #10	ENSGT00940000163215 #11	ENSGT00940000155191.b #12	ENSGT00390000009664 #13	ENSGT00390000014721 #14	ENSGT00940000159844 #15	ENSGT00940000159372 #17	ENSGT00940000162017 #16	ENSGT00940000162036 #18	ENSGT00940000162310 #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b #24	ENSGT00940000157496 #25	ENSGT01040000240503.B #26	ENSGT00390000009210 #27	ENSGT00940000160672 #28	ENSGT00940000160688 #29	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b #31	ENSGT00390000004049 #32	ENSGT00940000159866 #33	ENSGT00940000163910 #34	ENSGT00940000160289 #35	ENSGT00940000162799	ENSGT00390000018162 #36
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000002148 #7	ENSGT00390000010184 #8	ENSGT00950000182887.C.a.a.b #9	ENSGT00730000111225 #10	ENSGT00940000163215 #11	ENSGT00940000155191.b #12	ENSGT00390000009664 #13	ENSGT00390000014721 #14	ENSGT00940000159844 #15	ENSGT00940000159372 #17	ENSGT00940000162017 #16	ENSGT00940000162036 #18	ENSGT00940000162310 #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b #24	ENSGT00940000157496 #25	ENSGT01040000240503.B #26	ENSGT00390000009210 #27	ENSGT00940000160672 #28	ENSGT00940000160688 #29	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b #31	ENSGT00390000004049 #32	ENSGT00940000159866 #33	ENSGT00940000163910 #34	ENSGT00940000160289 #35	ENSGT00940000162799	ENSGT00390000018162 #36
Guinea pig	MODERN SPECIES	61	ENSCPOG00000032022 #7	MED11 (ENSCPOG00000035175) #8	ARRB2 (ENSCPOG00000032406) #9	PELP1 (ENSCPOG00000000208) #10	ENSCPOG00000025306 #11	ALOX12 (ENSCPOG00000004058) #12	RNASEK (ENSCPOG00000004064) #13	C17orf49 (ENSCPOG00000004065) #14	BCL6B (ENSCPOG00000004066) #15	SLC16A11 (ENSCPOG00000005851) #16	SLC16A13 (ENSCPOG00000030718) #17	ENSCPOG00000009682 #18	ASGR2 (ENSCPOG00000039341) #19	ASGR1 (ENSCPOG00000009813) #20	DLG4 (ENSCPOG00000020815) #21	ACADVL (ENSCPOG00000020114) #22	DVL2 (ENSCPOG00000023401) #23	PHF23 (ENSCPOG00000033111) #24	ENSCPOG00000012853 #25	CTDNEP1 (ENSCPOG00000037721) #26	ELP5 (ENSCPOG00000032736) #27	CLDN7 (ENSCPOG00000020951) #28	SLC2A4 (ENSCPOG00000031830) #29	YBX2 (ENSCPOG00000009543) #30	ENSCPOG00000038013 #31	GPS2 (ENSCPOG00000035566) #32	NEURL4 (ENSCPOG00000009550) #33	ENSCPOG00000021214 #34	ACAP1 (ENSCPOG00000009885) #35	TMEM95 (ENSCPOG00000033494) #36	TNK1 (ENSCPOG00000009564) #37
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00390000002148 #7	ENSGT00390000010184 #8	ENSGT00950000182887.C.a.a.b #9	ENSGT00730000111225 #10	ENSGT00940000163215 #11	ENSGT00940000155191.b #12	ENSGT00390000009664 #13	ENSGT00390000014721 #14	ENSGT00940000159844 #15	ENSGT00940000159372 #17	ENSGT00940000162017 #16	ENSGT00940000162036 #18	ENSGT00940000162310 #19	ENSGT00940000161727 #20	ENSGT00940000157956 #21	ENSGT00940000158535 #22	ENSGT00950000182903.a.b #23	ENSGT00530000063882.b #24	ENSGT00940000157496 #25	ENSGT01040000240503.B #26	ENSGT00390000009210 #27	ENSGT00940000160672 #28	ENSGT00940000160688 #29	ENSGT00940000159816 #30	ENSGT00390000003738.a.a.b #31	ENSGT00390000004049 #32	ENSGT00940000159866 #33	ENSGT00940000163910 #34	ENSGT00940000160289 #35	ENSGT00940000162799	ENSGT00390000018162 #36
Degu	MODERN SPECIES	139	ENSODEG00000017890 #11	ENSODEG00000017037	ALOX12 (ENSODEG00000017256) #12	RNASEK (ENSODEG00000017378) #13	ENSODEG00000017485 #14	BCL6B (ENSODEG00000017360) #15	SLC16A13 (ENSODEG00000017767) #17	SLC16A11 (ENSODEG00000017518) #16	ENSODEG00000017420	CLEC10A (ENSODEG00000017450) #18	ENSODEG00000017527	ASGR2 (ENSODEG00000017289) #19	ENSODEG00000020478	ASGR1 (ENSODEG00000017268) #20	DLG4 (ENSODEG00000017252) #21	ACADVL (ENSODEG00000017418) #22	DVL2 (ENSODEG00000017448) #23	PHF23 (ENSODEG00000017333) #24	GABARAP (ENSODEG00000017476) #25	ENSODEG00000017490 #26	ELP5 (ENSODEG00000017304) #27	CLDN7 (ENSODEG00000017387) #28	ENSODEG00000020514	SLC2A4 (ENSODEG00000017582) #29	YBX2 (ENSODEG00000017530) #30	ENSODEG00000017377 #31	GPS2 (ENSODEG00000017752) #32	NEURL4 (ENSODEG00000017430) #33	ACAP1 (ENSODEG00000017479) #35	KCTD11 (ENSODEG00000020512)	TMEM95 (ENSODEG00000017467) #36
Long-tailed chinchilla	MODERN SPECIES	174	ENSCLAG00000007478 #7	MED11 (ENSCLAG00000010821) #8	ARRB2 (ENSCLAG00000011239) #9	PELP1 (ENSCLAG00000009775) #10	ENSCLAG00000008230 #11	ALOX12 (ENSCLAG00000009075) #12	RNASEK (ENSCLAG00000008824) #13	C17orf49 (ENSCLAG00000009875) #14	BCL6B (ENSCLAG00000014925) #15	SLC16A13 (ENSCLAG00000013278) #17	SLC16A11 (ENSCLAG00000010002) #16	CLEC10A (ENSCLAG00000007810) #18	ASGR2 (ENSCLAG00000007744) #19	ASGR1 (ENSCLAG00000012374) #20	DLG4 (ENSCLAG00000010331) #21	ACADVL (ENSCLAG00000009521) #22	DVL2 (ENSCLAG00000008610) #23	PHF23 (ENSCLAG00000007184) #24	GABARAP (ENSCLAG00000007883) #25	CTDNEP1 (ENSCLAG00000011085) #26	CLDN7 (ENSCLAG00000015583) #28	ELP5 (ENSCLAG00000014750) #27	SLC2A4 (ENSCLAG00000014647) #29	YBX2 (ENSCLAG00000010306) #30	ENSCLAG00000013712 #31	GPS2 (ENSCLAG00000012750) #32	NEURL4 (ENSCLAG00000014798) #33	ENSCLAG00000013536 #34	ACAP1 (ENSCLAG00000011835) #35	TMEM95 (ENSCLAG00000013396) #36	TNK1 (ENSCLAG00000012522) #37
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000013848 #11	ENSHGLG00000047766	ENSHGLG00000040120	ENSHGLG00000012038 #16	BCL6B (ENSHGLG00000013098) #15	C17orf49 (ENSHGLG00000009897) #14	RNASEK (ENSHGLG00000012296) #13	ENSHGLG00000010750 #12	ENSHGLG00000010039	ENSHGLG00000045230	ENSHGLG00000039896	ENSHGLG00000034256 #18	ENSHGLG00000009539 #19	ASGR1 (ENSHGLG00000011616) #20	DLG4 (ENSHGLG00000010073) #21	ACADVL (ENSHGLG00000011018) #22	DVL2 (ENSHGLG00000009952) #23	GABARAP (ENSHGLG00000037772) #25	CTDNEP1 (ENSHGLG00000016839) #26	ELP5 (ENSHGLG00000041587) #27	CLDN7 (ENSHGLG00000011140) #28	SLC2A4 (ENSHGLG00000013185) #29	ENSHGLG00000044131 #31	ENSHGLG00000014186 #30	GPS2 (ENSHGLG00000011192) #32	ENSHGLG00000018261 #34	KCTD11 (ENSHGLG00000047152)	PLSCR3 (ENSHGLG00000019015)	TMEM256 (ENSHGLG00000018691)	NLGN2 (ENSHGLG00000041822)	SPEM2 (ENSHGLG00000009650)