Rodentia_A ANCESTRAL SPECIES 3 ENSGT00390000010184 #8 ENSGT00950000182887.C.a.a.b #9 ENSGT00730000111225 #10 ENSGT00940000162807 ENSGT00940000163215 #11 ENSGT00940000155191.b #12 ENSGT00390000009664 #13 ENSGT00390000014721 #14 ENSGT00940000159844 #15 ENSGT00940000159372 #17 ENSGT00940000162017 #16 ENSGT00940000162036 #18 ENSGT00940000162310 #19 ENSGT00940000161727 #20 ENSGT00940000157956 #21 ENSGT00940000158535 #22 ENSGT00950000182903.a.b #23 ENSGT00530000063882.b #24 ENSGT00940000157496 #25 ENSGT01040000240503.B #26 ENSGT00390000009210 #27 ENSGT00940000160672 #28 ENSGT00940000160688 #29 ENSGT00940000159816 #30 ENSGT00390000003738.a.a.b #31 ENSGT00390000004049 #32 ENSGT00940000159866 #33 ENSGT00940000163910 #34 ENSGT00940000160289 #35 ENSGT00940000162799 ENSGT00390000018162 #36 Hystricomorpha ANCESTRAL SPECIES 3 ENSGT00390000002148 #7 ENSGT00390000010184 #8 ENSGT00950000182887.C.a.a.b #9 ENSGT00730000111225 #10 ENSGT00940000163215 #11 ENSGT00940000155191.b #12 ENSGT00390000009664 #13 ENSGT00390000014721 #14 ENSGT00940000159844 #15 ENSGT00940000159372 #17 ENSGT00940000162017 #16 ENSGT00940000162036 #18 ENSGT00940000162310 #19 ENSGT00940000161727 #20 ENSGT00940000157956 #21 ENSGT00940000158535 #22 ENSGT00950000182903.a.b #23 ENSGT00530000063882.b #24 ENSGT00940000157496 #25 ENSGT01040000240503.B #26 ENSGT00390000009210 #27 ENSGT00940000160672 #28 ENSGT00940000160688 #29 ENSGT00940000159816 #30 ENSGT00390000003738.a.a.b #31 ENSGT00390000004049 #32 ENSGT00940000159866 #33 ENSGT00940000163910 #34 ENSGT00940000160289 #35 ENSGT00940000162799 ENSGT00390000018162 #36 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00390000002148 #7 ENSGT00390000010184 #8 ENSGT00950000182887.C.a.a.b #9 ENSGT00730000111225 #10 ENSGT00940000163215 #11 ENSGT00940000155191.b #12 ENSGT00390000009664 #13 ENSGT00390000014721 #14 ENSGT00940000159844 #15 ENSGT00940000159372 #17 ENSGT00940000162017 #16 ENSGT00940000162036 #18 ENSGT00940000162310 #19 ENSGT00940000161727 #20 ENSGT00940000157956 #21 ENSGT00940000158535 #22 ENSGT00950000182903.a.b #23 ENSGT00530000063882.b #24 ENSGT00940000157496 #25 ENSGT01040000240503.B #26 ENSGT00390000009210 #27 ENSGT00940000160672 #28 ENSGT00940000160688 #29 ENSGT00940000159816 #30 ENSGT00390000003738.a.a.b #31 ENSGT00390000004049 #32 ENSGT00940000159866 #33 ENSGT00940000163910 #34 ENSGT00940000160289 #35 ENSGT00940000162799 ENSGT00390000018162 #36 Guinea pig MODERN SPECIES 61 ENSCPOG00000032022 #7 MED11 (ENSCPOG00000035175) #8 ARRB2 (ENSCPOG00000032406) #9 PELP1 (ENSCPOG00000000208) #10 ENSCPOG00000025306 #11 ALOX12 (ENSCPOG00000004058) #12 RNASEK (ENSCPOG00000004064) #13 C17orf49 (ENSCPOG00000004065) #14 BCL6B (ENSCPOG00000004066) #15 SLC16A11 (ENSCPOG00000005851) #16 SLC16A13 (ENSCPOG00000030718) #17 ENSCPOG00000009682 #18 ASGR2 (ENSCPOG00000039341) #19 ASGR1 (ENSCPOG00000009813) #20 DLG4 (ENSCPOG00000020815) #21 ACADVL (ENSCPOG00000020114) #22 DVL2 (ENSCPOG00000023401) #23 PHF23 (ENSCPOG00000033111) #24 ENSCPOG00000012853 #25 CTDNEP1 (ENSCPOG00000037721) #26 ELP5 (ENSCPOG00000032736) #27 CLDN7 (ENSCPOG00000020951) #28 SLC2A4 (ENSCPOG00000031830) #29 YBX2 (ENSCPOG00000009543) #30 ENSCPOG00000038013 #31 GPS2 (ENSCPOG00000035566) #32 NEURL4 (ENSCPOG00000009550) #33 ENSCPOG00000021214 #34 ACAP1 (ENSCPOG00000009885) #35 TMEM95 (ENSCPOG00000033494) #36 TNK1 (ENSCPOG00000009564) #37 Hystricomorpha_b ANCESTRAL SPECIES 22 ENSGT00390000002148 #7 ENSGT00390000010184 #8 ENSGT00950000182887.C.a.a.b #9 ENSGT00730000111225 #10 ENSGT00940000163215 #11 ENSGT00940000155191.b #12 ENSGT00390000009664 #13 ENSGT00390000014721 #14 ENSGT00940000159844 #15 ENSGT00940000159372 #17 ENSGT00940000162017 #16 ENSGT00940000162036 #18 ENSGT00940000162310 #19 ENSGT00940000161727 #20 ENSGT00940000157956 #21 ENSGT00940000158535 #22 ENSGT00950000182903.a.b #23 ENSGT00530000063882.b #24 ENSGT00940000157496 #25 ENSGT01040000240503.B #26 ENSGT00390000009210 #27 ENSGT00940000160672 #28 ENSGT00940000160688 #29 ENSGT00940000159816 #30 ENSGT00390000003738.a.a.b #31 ENSGT00390000004049 #32 ENSGT00940000159866 #33 ENSGT00940000163910 #34 ENSGT00940000160289 #35 ENSGT00940000162799 ENSGT00390000018162 #36 Degu MODERN SPECIES 139 ENSODEG00000017890 #11 ENSODEG00000017037 ALOX12 (ENSODEG00000017256) #12 RNASEK (ENSODEG00000017378) #13 ENSODEG00000017485 #14 BCL6B (ENSODEG00000017360) #15 SLC16A13 (ENSODEG00000017767) #17 SLC16A11 (ENSODEG00000017518) #16 ENSODEG00000017420 CLEC10A (ENSODEG00000017450) #18 ENSODEG00000017527 ASGR2 (ENSODEG00000017289) #19 ENSODEG00000020478 ASGR1 (ENSODEG00000017268) #20 DLG4 (ENSODEG00000017252) #21 ACADVL (ENSODEG00000017418) #22 DVL2 (ENSODEG00000017448) #23 PHF23 (ENSODEG00000017333) #24 GABARAP (ENSODEG00000017476) #25 ENSODEG00000017490 #26 ELP5 (ENSODEG00000017304) #27 CLDN7 (ENSODEG00000017387) #28 ENSODEG00000020514 SLC2A4 (ENSODEG00000017582) #29 YBX2 (ENSODEG00000017530) #30 ENSODEG00000017377 #31 GPS2 (ENSODEG00000017752) #32 NEURL4 (ENSODEG00000017430) #33 ACAP1 (ENSODEG00000017479) #35 KCTD11 (ENSODEG00000020512) TMEM95 (ENSODEG00000017467) #36 Long-tailed chinchilla MODERN SPECIES 174 ENSCLAG00000007478 #7 MED11 (ENSCLAG00000010821) #8 ARRB2 (ENSCLAG00000011239) #9 PELP1 (ENSCLAG00000009775) #10 ENSCLAG00000008230 #11 ALOX12 (ENSCLAG00000009075) #12 RNASEK (ENSCLAG00000008824) #13 C17orf49 (ENSCLAG00000009875) #14 BCL6B (ENSCLAG00000014925) #15 SLC16A13 (ENSCLAG00000013278) #17 SLC16A11 (ENSCLAG00000010002) #16 CLEC10A (ENSCLAG00000007810) #18 ASGR2 (ENSCLAG00000007744) #19 ASGR1 (ENSCLAG00000012374) #20 DLG4 (ENSCLAG00000010331) #21 ACADVL (ENSCLAG00000009521) #22 DVL2 (ENSCLAG00000008610) #23 PHF23 (ENSCLAG00000007184) #24 GABARAP (ENSCLAG00000007883) #25 CTDNEP1 (ENSCLAG00000011085) #26 CLDN7 (ENSCLAG00000015583) #28 ELP5 (ENSCLAG00000014750) #27 SLC2A4 (ENSCLAG00000014647) #29 YBX2 (ENSCLAG00000010306) #30 ENSCLAG00000013712 #31 GPS2 (ENSCLAG00000012750) #32 NEURL4 (ENSCLAG00000014798) #33 ENSCLAG00000013536 #34 ACAP1 (ENSCLAG00000011835) #35 TMEM95 (ENSCLAG00000013396) #36 TNK1 (ENSCLAG00000012522) #37 Naked mole-rat female MODERN SPECIES 12 ENSHGLG00000013848 #11 ENSHGLG00000047766 ENSHGLG00000040120 ENSHGLG00000012038 #16 BCL6B (ENSHGLG00000013098) #15 C17orf49 (ENSHGLG00000009897) #14 RNASEK (ENSHGLG00000012296) #13 ENSHGLG00000010750 #12 ENSHGLG00000010039 ENSHGLG00000045230 ENSHGLG00000039896 ENSHGLG00000034256 #18 ENSHGLG00000009539 #19 ASGR1 (ENSHGLG00000011616) #20 DLG4 (ENSHGLG00000010073) #21 ACADVL (ENSHGLG00000011018) #22 DVL2 (ENSHGLG00000009952) #23 GABARAP (ENSHGLG00000037772) #25 CTDNEP1 (ENSHGLG00000016839) #26 ELP5 (ENSHGLG00000041587) #27 CLDN7 (ENSHGLG00000011140) #28 SLC2A4 (ENSHGLG00000013185) #29 ENSHGLG00000044131 #31 ENSHGLG00000014186 #30 GPS2 (ENSHGLG00000011192) #32 ENSHGLG00000018261 #34 KCTD11 (ENSHGLG00000047152) PLSCR3 (ENSHGLG00000019015) TMEM256 (ENSHGLG00000018691) NLGN2 (ENSHGLG00000041822) SPEM2 (ENSHGLG00000009650) Sciuridae ANCESTRAL SPECIES 25 ENSGT00390000010184 #8 ENSGT00950000182887.C.a.a.b #9 ENSGT00730000111225 #10 ENSGT00940000162807 ENSGT00940000163215 #11 ENSGT00940000155191.b #12 ENSGT00390000009664 #13 ENSGT00390000014721 #14 ENSGT00940000159844 #15 ENSGT00940000159372 #17 ENSGT00940000162017 #16 ENSGT00940000162036 #18 ENSGT00940000162310 #19 ENSGT00940000161727 #20 ENSGT00940000157956 #21 ENSGT00940000158535 #22 ENSGT00950000182903.a.b #23 ENSGT00530000063882.b #24 ENSGT00940000157496 #25 ENSGT01040000240503.B #26 ENSGT00390000009210 #27 ENSGT00940000160672 #28 ENSGT00940000160688 #29 ENSGT00940000159816 #30 ENSGT00390000003738.a.a.b #31 ENSGT00390000004049 #32 ENSGT00940000159866 #33 ENSGT00940000163910 #34 ENSGT00940000160289 #35 ENSGT00940000162799 ENSGT00390000018162 #36 Marmotini ANCESTRAL SPECIES 42 ENSGT00940000163181 ENSGT00940000163303 ENSGT00940000162835 ENSGT00940000162945 ENSGT00940000163215 #11 ENSGT00940000155191.b #12 ENSGT00390000009664 #13 ENSGT00390000014721 #14 ENSGT00940000159844 #15 ENSGT00940000159372 #17 ENSGT00940000162017 #16 ENSGT00940000162036 #18 ENSGT00940000162310 #19 ENSGT00940000161727 #20 ENSGT00940000157956 #21 ENSGT00940000158535 #22 ENSGT00950000182903.a.b #23 ENSGT00530000063882.b #24 ENSGT00940000157496 #25 ENSGT01040000240503.B #26 ENSGT00390000009210 #27 ENSGT00940000160672 #28 ENSGT00940000160688 #29 ENSGT00940000159816 #30 ENSGT00390000003738.a.a.b #31 ENSGT00390000004049 #32 ENSGT00940000159866 #33 ENSGT00940000163910 #34 ENSGT00940000160289 #35 ENSGT00940000162799 ENSGT00390000018162 #36 Marmotini_b ANCESTRAL SPECIES 35 ENSGT00940000163181 ENSGT00940000163303 ENSGT00940000162835 ENSGT00940000162945 ENSGT00940000163215 #11 ENSGT00940000155191.b #12 ENSGT00390000009664 #13 ENSGT00390000014721 #14 ENSGT00940000159844 #15 ENSGT00940000159372 #17 ENSGT00940000162017 #16 ENSGT00940000162036 #18 ENSGT00940000162310 #19 ENSGT00940000161727 #20 ENSGT00940000157956 #21 ENSGT00940000158535 #22 ENSGT00950000182903.a.b #23 ENSGT00530000063882.b #24 ENSGT00940000157496 #25 ENSGT01040000240503.B #26 ENSGT00390000009210 #27 ENSGT00940000160672 #28 ENSGT00940000160688 #29 ENSGT00940000159816 #30 ENSGT00390000003738.a.a.b #31 ENSGT00390000004049 #32 ENSGT00940000159866 #33 ENSGT00940000163910 #34 ENSGT00940000160289 #35 ENSGT00940000162799 ENSGT00390000018162 #36 Squirrel MODERN SPECIES 195 ENSSTOG00000030408 ENSSTOG00000025587 OR3A1 (ENSSTOG00000020842) ENSSTOG00000028642 ENSSTOG00000010664 #11 ALOX12 (ENSSTOG00000006319) #12 RNASEK (ENSSTOG00000006350) #13 C17orf49 (ENSSTOG00000023220) #14 BCL6B (ENSSTOG00000006365) #15 SLC16A13 (ENSSTOG00000025634) #17 SLC16A11 (ENSSTOG00000024724) #16 ASGR2 (ENSSTOG00000027578) #19 ENSSTOG00000029607 ASGR1 (ENSSTOG00000008541) #20 DLG4 (ENSSTOG00000008559) #21 ACADVL (ENSSTOG00000008582) #22 DVL2 (ENSSTOG00000008603) #23 PHF23 (ENSSTOG00000022541) #24 GABARAP (ENSSTOG00000024711) #25 CTDNEP1 (ENSSTOG00000020211) #26 ELP5 (ENSSTOG00000001194) #27 CLDN7 (ENSSTOG00000001197) #28 SLC2A4 (ENSSTOG00000008616) #29 YBX2 (ENSSTOG00000008630) #30 ENSSTOG00000020652 #31 GPS2 (ENSSTOG00000020716) #32 NEURL4 (ENSSTOG00000007523) #33 ENSSTOG00000024856 #34 ACAP1 (ENSSTOG00000007588) #35 KCTD11 (ENSSTOG00000022117) TMEM95 (ENSSTOG00000030735) #36 Arctic ground squirrel MODERN SPECIES 77 CLEC10A (ENSUPAG00010013954) #18 ASGR2 (ENSUPAG00010013970) #19 ASGR1 (ENSUPAG00010013997) #20 DLG4 (ENSUPAG00010014047) #21 ACADVL (ENSUPAG00010014220) #22 DVL2 (ENSUPAG00010014286) #23 PHF23 (ENSUPAG00010014321) #24 GABARAP (ENSUPAG00010014341) #25 CTDNEP1 (ENSUPAG00010014358) #26 ELP5 (ENSUPAG00010014373) #27 CLDN7 (ENSUPAG00010014405) #28 SLC2A4 (ENSUPAG00010014416) #29 YBX2 (ENSUPAG00010014438) #30 ENSUPAG00010014451 #31 GPS2 (ENSUPAG00010014484) #32 NEURL4 (ENSUPAG00010014532) #33 ENSUPAG00010014750 #34 ACAP1 (ENSUPAG00010014808) #35 KCTD11 (ENSUPAG00010014856) TMEM95 (ENSUPAG00010014860) #36 Alpin marmot MODERN SPECIES 92 ENSMMMG00000018709 ENSMMMG00000018712 OR3A1 (ENSMMMG00000018718) ENSMMMG00000018732 ENSMMMG00000018739 #11 ALOX12 (ENSMMMG00000018784) #12 RNASEK (ENSMMMG00000018806) #13 C17orf49 (ENSMMMG00000018813) #14 BCL6B (ENSMMMG00000018844) #15 SLC16A13 (ENSMMMG00000018850) #17 SLC16A11 (ENSMMMG00000018851) #16 ENSMMMG00000018884 #18 ASGR2 (ENSMMMG00000018905) #19 ASGR1 (ENSMMMG00000018913) #20 DLG4 (ENSMMMG00000018940) #21 ACADVL (ENSMMMG00000019195) #22 DVL2 (ENSMMMG00000019219) #23 PHF23 (ENSMMMG00000019227) #24 GABARAP (ENSMMMG00000019236) #25 CTDNEP1 (ENSMMMG00000019241) #26 ELP5 (ENSMMMG00000019251) #27 CLDN7 (ENSMMMG00000019254) #28 SLC2A4 (ENSMMMG00000019260) #29 YBX2 (ENSMMMG00000019268) #30 ENSMMMG00000019282 #31 GPS2 (ENSMMMG00000019304) #32 NEURL4 (ENSMMMG00000019309) #33 ENSMMMG00000019415 #34 ACAP1 (ENSMMMG00000019466) #35 KCTD11 (ENSMMMG00000019479) TMEM95 (ENSMMMG00000019482) #36 Eurasian red squirrel MODERN SPECIES 12 ENSSVLG00005009734 ENSSVLG00005009703 ENSSVLG00005009686 ENSSVLG00005009598 #11 ALOX12 (ENSSVLG00005009559) #12 RNASEK (ENSSVLG00005009408) #13 C17orf49 (ENSSVLG00005009498) #14 BCL6B (ENSSVLG00005009352) #15 SLC16A13 (ENSSVLG00005009320) #17 SLC16A11 (ENSSVLG00005009286) #16 ENSSVLG00005009269 ENSSVLG00005009098 #18 ASGR2 (ENSSVLG00005009019) #19 ASGR1 (ENSSVLG00005008890) #20 DLG4 (ENSSVLG00005008616) #21 ACADVL (ENSSVLG00005008422) #22 DVL2 (ENSSVLG00005008374) #23 PHF23 (ENSSVLG00005008326) #24 ENSSVLG00005008294 #25 CTDNEP1 (ENSSVLG00005008230) #26 ELP5 (ENSSVLG00005008205) #27 CLDN7 (ENSSVLG00005008134) #28 SLC2A4 (ENSSVLG00005007987) #29 ENSSVLG00005007756 #31 GPS2 (ENSSVLG00005007679) #32 NEURL4 (ENSSVLG00005007333) #33 ENSSVLG00005007180 #34 ACAP1 (ENSSVLG00005007080) #35 KCTD11 (ENSSVLG00005007059) TMEM95 (ENSSVLG00005006999) #36 TNK1 (ENSSVLG00005006897) #37