Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00390000009189	ENSGT00950000182836.a #7	ENSGT00940000160921 #8	ENSGT00940000158182 #9	ENSGT00940000160421 #10	ENSGT00940000159274 #11	ENSGT00950000183114.a.a #12	ENSGT00950000182886.b.a #13	ENSGT00390000006408 #15	ENSGT00390000008808 #16	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #24	ENSGT00440000037341.a #25	ENSGT00940000160910 #27	ENSGT00390000017627.a #28	ENSGT00940000159330 #29	ENSGT00950000183095.a.b.a.b.b #30	ENSGT00390000006205.a #31	ENSGT00440000039029 #32	ENSGT00940000160736 #33	ENSGT00940000159084 #34	ENSGT00500000045333 #35	ENSGT00390000006395 #36	ENSGT00390000001588 #37	ENSGT00950000183024.a.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00390000009189	ENSGT00950000182836.a #7	ENSGT00940000160921 #8	ENSGT00940000158182 #9	ENSGT00940000160421 #10	ENSGT00940000159274 #11	ENSGT00950000183114.a.a #12	ENSGT00950000182886.b.a #13	ENSGT00390000006408 #15	ENSGT00390000008808 #16	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #24	ENSGT00440000037341.a #25	ENSGT00940000160910 #27	ENSGT00390000017627.a #28	ENSGT00940000159330 #29	ENSGT00950000183095.a.b.a.b.b #30	ENSGT00390000006205.a #31	ENSGT00440000039029 #32	ENSGT00940000160736 #33	ENSGT00940000159084 #34	ENSGT00500000045333 #35	ENSGT00390000006395 #36	ENSGT00390000001588 #37	ENSGT00950000183024.a.a.b
Guinea pig	MODERN SPECIES	18	LCLAT1 (ENSCPOG00000035779) #7	CAPN13 (ENSCPOG00000004800) #8	GALNT14 (ENSCPOG00000004020) #9	ENSCPOG00000026094 #10	EHD3 (ENSCPOG00000034108) #11	XDH (ENSCPOG00000005074) #12	SRD5A2 (ENSCPOG00000023716) #13	ENSCPOG00000025603 #14	MEMO1 (ENSCPOG00000012278) #15	DPY30 (ENSCPOG00000006349) #16	SPAST (ENSCPOG00000008815) #17	SLC30A6 (ENSCPOG00000036174) #18	NLRC4 (ENSCPOG00000008148) #19	YIPF4 (ENSCPOG00000037032) #20	BIRC6 (ENSCPOG00000013371) #21	TTC27 (ENSCPOG00000000166) #22	LTBP1 (ENSCPOG00000007011) #23	RASGRP3 (ENSCPOG00000002062) #24	FAM98A (ENSCPOG00000002065) #25	ENSCPOG00000019281 #26	CRIM1 (ENSCPOG00000009397) #27	FEZ2 (ENSCPOG00000009413) #28	VIT (ENSCPOG00000012173) #29	STRN (ENSCPOG00000012176) #30	HEATR5B (ENSCPOG00000012179) #31	GPATCH11 (ENSCPOG00000012194) #32	EIF2AK2 (ENSCPOG00000012198) #33	SULT6B1 (ENSCPOG00000012204) #34	CEBPZOS (ENSCPOG00000036822) #35	CEBPZ (ENSCPOG00000020778) #36	NDUFAF7 (ENSCPOG00000021066) #37
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00940000154800.ab	ENSGT00390000009189	ENSGT00950000182836.a #7	ENSGT00940000160921 #8	ENSGT00940000158182 #9	ENSGT00940000159274 #11	ENSGT00950000183114.a.a #12	ENSGT00950000182886.b.a #13	ENSGT00390000006408 #15	ENSGT00390000008808 #16	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #24	ENSGT00440000037341.a #25	ENSGT00940000160910 #27	ENSGT00390000017627.a #28	ENSGT00940000159330 #29	ENSGT00950000183095.a.b.a.b.b #30	ENSGT00390000006205.a #31	ENSGT00440000039029 #32	ENSGT00940000160736 #33	ENSGT00940000159084 #34	ENSGT00500000045333 #35	ENSGT00390000006395 #36	ENSGT00390000001588 #37	ENSGT00950000183024.a.a.b
Long-tailed chinchilla	MODERN SPECIES	148							SRD5A2 (ENSCLAG00000004854) #13	MEMO1 (ENSCLAG00000004990) #15	DPY30 (ENSCLAG00000005066) #16	SPAST (ENSCLAG00000005426) #17	SLC30A6 (ENSCLAG00000005442) #18	NLRC4 (ENSCLAG00000005687) #19	YIPF4 (ENSCLAG00000006034) #20	ENSCLAG00000006069	BIRC6 (ENSCLAG00000006515) #21	TTC27 (ENSCLAG00000003463) #22	LTBP1 (ENSCLAG00000003769) #23	RASGRP3 (ENSCLAG00000004010) #24	FAM98A (ENSCLAG00000004259) #25	CRIM1 (ENSCLAG00000006586) #27	ENSCLAG00000006903 #28	VIT (ENSCLAG00000006993) #29	STRN (ENSCLAG00000007211) #30	HEATR5B (ENSCLAG00000007347) #31	GPATCH11 (ENSCLAG00000008061) #32	ENSCLAG00000008409 #33	SULT6B1 (ENSCLAG00000008525) #34	CEBPZOS (ENSCLAG00000009294) #35	CEBPZ (ENSCLAG00000009453) #36	NDUFAF7 (ENSCLAG00000017328) #37	PRKD3 (ENSCLAG00000004573)
Degu	MODERN SPECIES	61									ENSODEG00000010284 #15	ENSODEG00000009012 #16	SPAST (ENSODEG00000009753) #17	SLC30A6 (ENSODEG00000008632) #18	NLRC4 (ENSODEG00000010692) #19	YIPF4 (ENSODEG00000008923) #20	BIRC6 (ENSODEG00000008966) #21	TTC27 (ENSODEG00000010290) #22	LTBP1 (ENSODEG00000009508) #23	ENSODEG00000012474	RASGRP3 (ENSODEG00000010417) #24	CRIM1 (ENSODEG00000011072) #27	FEZ2 (ENSODEG00000011376) #28	VIT (ENSODEG00000012033) #29	STRN (ENSODEG00000009292) #30	HEATR5B (ENSODEG00000009045) #31	GPATCH11 (ENSODEG00000011404) #32	ENSODEG00000019711	ENSODEG00000010489	SULT6B1 (ENSODEG00000009825) #34	ENSODEG00000010503 #35	ENSODEG00000011002 #36	ENSODEG00000011006 #37
Naked mole-rat female	MODERN SPECIES	23	EHD3 (ENSHGLG00000014803) #11	XDH (ENSHGLG00000013979) #12	SRD5A2 (ENSHGLG00000047600) #13	ENSHGLG00000018935 #15	DPY30 (ENSHGLG00000013219) #16	ENSHGLG00000033496	SPAST (ENSHGLG00000005503) #17	SLC30A6 (ENSHGLG00000007024) #18	NLRC4 (ENSHGLG00000005309) #19	ENSHGLG00000009004	ENSHGLG00000020491	YIPF4 (ENSHGLG00000008283) #20	ENSHGLG00000047170	BIRC6 (ENSHGLG00000006871) #21	ENSHGLG00000015688	ENSHGLG00000015184 #22	ENSHGLG00000015265	ENSHGLG00000033660	ENSHGLG00000034734	ENSHGLG00000013628 #23	ENSHGLG00000047365	ENSHGLG00000017850	ENSHGLG00000045168	ENSHGLG00000006723	ENSHGLG00000011801 #24	ENSHGLG00000013582 #25	ENSHGLG00000044801	ENSHGLG00000046438	ENSHGLG00000014990	ENSHGLG00000006761	ENSHGLG00000007155