Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00950000182836.a	ENSGT00940000160921	ENSGT00940000158182	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408 #15	ENSGT00390000008808 #16	ENSGT01050000245125	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #25	ENSGT00440000037341.a	ENSGT00940000160910 #26	ENSGT00390000017627.a #27	ENSGT00940000159330 #28	ENSGT00950000183095.a.b.a.b.b #29	ENSGT00390000006205.a #30	ENSGT00440000039029 #31	ENSGT00940000160736	ENSGT00940000159084 #34	ENSGT00500000045333 #35	ENSGT00390000006395 #36	ENSGT00390000001588 #37	ENSGT00950000183024.a.a.b
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00390000009189	ENSGT00950000182836.a	ENSGT00940000160921	ENSGT00940000158182	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408 #15	ENSGT00390000008808 #16	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #25	ENSGT00440000037341.a	ENSGT00940000160910 #26	ENSGT00390000017627.a #27	ENSGT00940000159330 #28	ENSGT00950000183095.a.b.a.b.b #29	ENSGT00390000006205.a #30	ENSGT00440000039029 #31	ENSGT00940000160736	ENSGT00940000159084 #34	ENSGT00500000045333 #35	ENSGT00390000006395 #36	ENSGT00390000001588 #37	ENSGT00950000183024.a.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00390000009189	ENSGT00950000182836.a	ENSGT00940000160921	ENSGT00940000158182	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408 #15	ENSGT00390000008808 #16	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #25	ENSGT00440000037341.a	ENSGT00940000160910 #26	ENSGT00390000017627.a #27	ENSGT00940000159330 #28	ENSGT00950000183095.a.b.a.b.b #29	ENSGT00390000006205.a #30	ENSGT00440000039029 #31	ENSGT00940000160736	ENSGT00940000159084 #34	ENSGT00500000045333 #35	ENSGT00390000006395 #36	ENSGT00390000001588 #37	ENSGT00950000183024.a.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00940000154800.ab	ENSGT00390000009189	ENSGT00950000182836.a	ENSGT00940000160921	ENSGT00940000158182	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408 #15	ENSGT00390000008808 #16	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #25	ENSGT00440000037341.a	ENSGT00940000160910 #26	ENSGT00390000017627.a #27	ENSGT00940000159330 #28	ENSGT00950000183095.a.b.a.b.b #29	ENSGT00390000006205.a #30	ENSGT00440000039029 #31	ENSGT00940000160736	ENSGT00940000159084 #34	ENSGT00500000045333 #35	ENSGT00390000006395 #36	ENSGT00390000001588 #37	ENSGT00950000183024.a.a.b
Degu	MODERN SPECIES	61									ENSODEG00000010284 #15	ENSODEG00000009012 #16	SPAST (ENSODEG00000009753) #17	SLC30A6 (ENSODEG00000008632) #18	NLRC4 (ENSODEG00000010692) #19	YIPF4 (ENSODEG00000008923) #20	BIRC6 (ENSODEG00000008966) #21	TTC27 (ENSODEG00000010290) #22	LTBP1 (ENSODEG00000009508) #23	ENSODEG00000012474 #24	RASGRP3 (ENSODEG00000010417) #25	CRIM1 (ENSODEG00000011072) #26	FEZ2 (ENSODEG00000011376) #27	VIT (ENSODEG00000012033) #28	STRN (ENSODEG00000009292) #29	HEATR5B (ENSODEG00000009045) #30	GPATCH11 (ENSODEG00000011404) #31	ENSODEG00000019711 #32	ENSODEG00000010489 #33	SULT6B1 (ENSODEG00000009825) #34	ENSODEG00000010503 #35	ENSODEG00000011002 #36	ENSODEG00000011006 #37
Long-tailed chinchilla	MODERN SPECIES	148							SRD5A2 (ENSCLAG00000004854)	MEMO1 (ENSCLAG00000004990) #15	DPY30 (ENSCLAG00000005066) #16	SPAST (ENSCLAG00000005426) #17	SLC30A6 (ENSCLAG00000005442) #18	NLRC4 (ENSCLAG00000005687) #19	YIPF4 (ENSCLAG00000006034) #20	ENSCLAG00000006069	BIRC6 (ENSCLAG00000006515) #21	TTC27 (ENSCLAG00000003463) #22	LTBP1 (ENSCLAG00000003769) #23	RASGRP3 (ENSCLAG00000004010) #25	FAM98A (ENSCLAG00000004259)	CRIM1 (ENSCLAG00000006586) #26	ENSCLAG00000006903 #27	VIT (ENSCLAG00000006993) #28	STRN (ENSCLAG00000007211) #29	HEATR5B (ENSCLAG00000007347) #30	GPATCH11 (ENSCLAG00000008061) #31	ENSCLAG00000008409	SULT6B1 (ENSCLAG00000008525) #34	CEBPZOS (ENSCLAG00000009294) #35	CEBPZ (ENSCLAG00000009453) #36	NDUFAF7 (ENSCLAG00000017328) #37	PRKD3 (ENSCLAG00000004573)
Guinea pig	MODERN SPECIES	18	LCLAT1 (ENSCPOG00000035779)	CAPN13 (ENSCPOG00000004800)	GALNT14 (ENSCPOG00000004020)	ENSCPOG00000026094	EHD3 (ENSCPOG00000034108)	XDH (ENSCPOG00000005074)	SRD5A2 (ENSCPOG00000023716)	ENSCPOG00000025603	MEMO1 (ENSCPOG00000012278) #15	DPY30 (ENSCPOG00000006349) #16	SPAST (ENSCPOG00000008815) #17	SLC30A6 (ENSCPOG00000036174) #18	NLRC4 (ENSCPOG00000008148) #19	YIPF4 (ENSCPOG00000037032) #20	BIRC6 (ENSCPOG00000013371) #21	TTC27 (ENSCPOG00000000166) #22	LTBP1 (ENSCPOG00000007011) #23	RASGRP3 (ENSCPOG00000002062) #25	FAM98A (ENSCPOG00000002065)	ENSCPOG00000019281	CRIM1 (ENSCPOG00000009397) #26	FEZ2 (ENSCPOG00000009413) #27	VIT (ENSCPOG00000012173) #28	STRN (ENSCPOG00000012176) #29	HEATR5B (ENSCPOG00000012179) #30	GPATCH11 (ENSCPOG00000012194) #31	EIF2AK2 (ENSCPOG00000012198)	SULT6B1 (ENSCPOG00000012204) #34	CEBPZOS (ENSCPOG00000036822) #35	CEBPZ (ENSCPOG00000020778) #36	NDUFAF7 (ENSCPOG00000021066) #37
Naked mole-rat female	MODERN SPECIES	23	EHD3 (ENSHGLG00000014803)	XDH (ENSHGLG00000013979)	SRD5A2 (ENSHGLG00000047600)	ENSHGLG00000018935 #15	DPY30 (ENSHGLG00000013219) #16	ENSHGLG00000033496	SPAST (ENSHGLG00000005503) #17	SLC30A6 (ENSHGLG00000007024) #18	NLRC4 (ENSHGLG00000005309) #19	ENSHGLG00000009004	ENSHGLG00000020491	YIPF4 (ENSHGLG00000008283) #20	ENSHGLG00000047170	BIRC6 (ENSHGLG00000006871) #21	ENSHGLG00000015688	ENSHGLG00000015184 #22	ENSHGLG00000015265	ENSHGLG00000033660	ENSHGLG00000034734	ENSHGLG00000013628 #23	ENSHGLG00000047365	ENSHGLG00000017850	ENSHGLG00000045168	ENSHGLG00000006723	ENSHGLG00000011801 #25	ENSHGLG00000013582	ENSHGLG00000044801	ENSHGLG00000046438	ENSHGLG00000014990	ENSHGLG00000006761	ENSHGLG00000007155
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00950000182836.a	ENSGT00940000160921	ENSGT00940000158182	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408 #15	ENSGT00390000008808 #16	ENSGT01050000245125	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #25	ENSGT00440000037341.a	ENSGT00940000160910 #26	ENSGT00390000017627.a #27	ENSGT00940000159330 #28	ENSGT00950000183095.a.b.a.b.b #29	ENSGT00390000006205.a #30	ENSGT00440000039029 #31	ENSGT00940000160736	ENSGT00940000159084 #34	ENSGT00500000045333 #35	ENSGT00390000006395 #36	ENSGT00390000001588 #37	ENSGT00950000183024.a.a.b
Marmotini	ANCESTRAL SPECIES	14	ENSGT00940000160921.a	ENSGT00940000158182	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408 #15	ENSGT00390000008808.c #16	ENSGT01050000245125	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00390000006305.f	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #25	ENSGT00440000037341.a	ENSGT00940000160910 #26	ENSGT00390000017627.a #27	ENSGT00940000159330 #28	ENSGT00950000183095.a.b.a.b.b #29	ENSGT00390000006205.a #30	ENSGT00440000039029 #31	ENSGT00940000160736	ENSGT00940000159084 #34	ENSGT00500000045333 #35	ENSGT00390000006395 #36	ENSGT00390000001588 #37	ENSGT00950000183024.a.a.b
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00940000160921.a	ENSGT00940000158182	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00950000182886.b.a	ENSGT00390000006408 #15	ENSGT00390000008808.c #16	ENSGT01050000245125	ENSGT00940000156258 #17	ENSGT00940000159934 #18	ENSGT00940000161744 #19	ENSGT00940000153168.B #20	ENSGT00940000156126 #21	ENSGT00390000006305.f	ENSGT00500000044929 #22	ENSGT00940000155823.B #23	ENSGT00940000158843 #25	ENSGT00440000037341.a
Squirrel	MODERN SPECIES	93	LCLAT1 (ENSSTOG00000004703)	CAPN13 (ENSSTOG00000011438)	GALNT14 (ENSSTOG00000012135)	CAPN14 (ENSSTOG00000021907)	EHD3 (ENSSTOG00000028279)	XDH (ENSSTOG00000012152)	SRD5A2 (ENSSTOG00000028843)	MEMO1 (ENSSTOG00000002828) #15	DPY30 (ENSSTOG00000013372) #16	SPAST (ENSSTOG00000019363) #17	SLC30A6 (ENSSTOG00000002286) #18	NLRC4 (ENSSTOG00000026976) #19	YIPF4 (ENSSTOG00000012128) #20	BIRC6 (ENSSTOG00000028422) #21	ENSSTOG00000031910	TTC27 (ENSSTOG00000027305) #22	LTBP1 (ENSSTOG00000011543) #23	RASGRP3 (ENSSTOG00000010471) #25	FAM98A (ENSSTOG00000010483)
Arctic ground squirrel	MODERN SPECIES		ENSUPAG00010002033	GALNT14 (ENSUPAG00010001997)	EHD3 (ENSUPAG00010001987)	XDH (ENSUPAG00010001959)	SRD5A2 (ENSUPAG00010001940)	MEMO1 (ENSUPAG00010001812) #15	ENSUPAG00010001753 #16	ENSUPAG00010001748	SPAST (ENSUPAG00010001625) #17	ENSUPAG00010001616	SLC30A6 (ENSUPAG00010001566) #18	NLRC4 (ENSUPAG00010001525) #19	YIPF4 (ENSUPAG00010001510) #20	BIRC6 (ENSUPAG00010000246) #21	ENSUPAG00010000225	TTC27 (ENSUPAG00010000115) #22	LTBP1 (ENSUPAG00010000004) #23	RASGRP3 (ENSUPAG00010000003) #25	FAM98A (ENSUPAG00010000002)
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000019108	LCLAT1 (ENSMMMG00000019092)	ENSMMMG00000019074	GALNT14 (ENSMMMG00000019041)	EHD3 (ENSMMMG00000018998)	XDH (ENSMMMG00000018970)	SRD5A2 (ENSMMMG00000018968)	MEMO1 (ENSMMMG00000018930) #15	ENSMMMG00000018887 #16	SPAST (ENSMMMG00000018838) #17	SLC30A6 (ENSMMMG00000018819) #18	NLRC4 (ENSMMMG00000018816) #19	YIPF4 (ENSMMMG00000018753) #20	BIRC6 (ENSMMMG00000018677) #21	ENSMMMG00000018644	TTC27 (ENSMMMG00000018618) #22	LTBP1 (ENSMMMG00000018556) #23	RASGRP3 (ENSMMMG00000018522) #25	FAM98A (ENSMMMG00000018506)	CRIM1 (ENSMMMG00000018434) #26	FEZ2 (ENSMMMG00000018399) #27	VIT (ENSMMMG00000018350) #28	STRN (ENSMMMG00000017653) #29	HEATR5B (ENSMMMG00000017586) #30	GPATCH11 (ENSMMMG00000017576) #31	EIF2AK2 (ENSMMMG00000017268)	SULT6B1 (ENSMMMG00000017259) #34	CEBPZOS (ENSMMMG00000017252) #35	CEBPZ (ENSMMMG00000017245) #36	NDUFAF7 (ENSMMMG00000017232) #37	ENSMMMG00000017166
Eurasian red squirrel	MODERN SPECIES	5	CAPN13 (ENSSVLG00005025044)	ENSSVLG00005025015	GALNT14 (ENSSVLG00005024988)	CAPN14 (ENSSVLG00005024950)	EHD3 (ENSSVLG00005024888)	XDH (ENSSVLG00005024759)	SRD5A2 (ENSSVLG00005024728)	MEMO1 (ENSSVLG00005024673) #15	DPY30 (ENSSVLG00005024637) #16	ENSSVLG00005024614	ENSSVLG00005024266 #17	SLC30A6 (ENSSVLG00005024101) #18	NLRC4 (ENSSVLG00005024010) #19	YIPF4 (ENSSVLG00005023974) #20	BIRC6 (ENSSVLG00005021693) #21	TTC27 (ENSSVLG00005021475) #22	LTBP1 (ENSSVLG00005020250) #23	RASGRP3 (ENSSVLG00005020068) #25	FAM98A (ENSSVLG00005019999)	ENSSVLG00005019964	CRIM1 (ENSSVLG00005019815) #26	ENSSVLG00005019685	FEZ2 (ENSSVLG00005019615) #27	VIT (ENSSVLG00005019081) #28	STRN (ENSSVLG00005018617) #29	HEATR5B (ENSSVLG00005018556) #30	GPATCH11 (ENSSVLG00005018465) #31	EIF2AK2 (ENSSVLG00005018363)	SULT6B1 (ENSSVLG00005018225) #34	ENSSVLG00005018164 #35	CEBPZ (ENSSVLG00005017972) #36