Sauria	ANCESTRAL SPECIES	17	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT00950000186323	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35
Archelosauria	ANCESTRAL SPECIES	15	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT00950000186323	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35
Archosauria	ANCESTRAL SPECIES	17	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.d ##15	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35
Aves	ANCESTRAL SPECIES	15	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.d ##15	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36
Neognathae	ANCESTRAL SPECIES	14	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.d ##15	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b
Galloanserae	ANCESTRAL SPECIES	14	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.d ##15	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000165985	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b	ENSGT00440000037499
Phasianidae	ANCESTRAL SPECIES	14	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT01070000257270 #23	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b	ENSGT00440000037499.v
Phasianidae_b	ANCESTRAL SPECIES	18	ENSGT00940000153441.b	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT01070000257270 #23	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b	ENSGT00440000037499.v
Chicken	MODERN SPECIES	4	KLHL3 (ENSGALG00010015660) #7	NPY6R (ENSGALG00010015705) #8	RBMXL3 (ENSGALG00010015709) #9	SPOCK1 (ENSGALG00010015776) #10	TRPC7 (ENSGALG00010015802) #11	ENSGALG00010016992 #12	SMAD5 (ENSGALG00010015829) #13	TGFBI (ENSGALG00010012839) #14	LECT2 (ENSGALG00010012854) #15	FBXL21 (ENSGALG00010012859) #16	IL9 (ENSGALG00010012960) #17	SLC25A48 (ENSGALG00010013042) #18	ENSGALG00010013074 #19	CXCL14 (ENSGALG00010013086) #20	NEUROG1 (ENSGALG00010013092) #21	H2AFY (ENSGALG00010016581) #22	PITX1 (ENSGALG00010012790) #23	PCBD2 (ENSGALG00010013121) #24	TXNDC15 (ENSGALG00010013133) #25	C5orf24 (ENSGALG00010013180) #26	DDX46 (ENSGALG00010013186) #27	CAMLG (ENSGALG00010013198) #28	SEC24A (ENSGALG00010013241) #29	SAR1B (ENSGALG00010013254) #30	JADE2 (ENSGALG00010013261) #31	ENSGALG00010012800 #32	UBE2B (ENSGALG00010015848) #33	PPP2CA (ENSGALG00010015861) #34	SKP1 (ENSGALG00010015876) #35	TCF7 (ENSGALG00010015893) #36	ENSGALG00010015897 #37
Japanese quail	MODERN SPECIES	4	MYOT (ENSCJPG00005005204)	ENSCJPG00005005202 #8	HNRNPA0 (ENSCJPG00005005201) #9	KLHL3 (ENSCJPG00005005200) #7	SPOCK1 (ENSCJPG00005005199) #10	TRPC7 (ENSCJPG00005005195) #11	ENSCJPG00005005193 #12	SMAD5 (ENSCJPG00005005192) #13	TGFBI (ENSCJPG00005005188) #14	ENSCJPG00005005186 #15	ENSCJPG00005005182 #16	ENSCJPG00005005181 #17	SLC25A48 (ENSCJPG00005005179) #18	CXCL14 (ENSCJPG00005005173) #20	NEUROG1 (ENSCJPG00005005172) #21	MACROH2A1 (ENSCJPG00005005171) #22	PITX1 (ENSCJPG00005005163)	PCBD2 (ENSCJPG00005005162) #24	TXNDC15 (ENSCJPG00005005159) #25	C5orf24 (ENSCJPG00005005156) #26	DDX46 (ENSCJPG00005005147) #27	CAMLG (ENSCJPG00005005143) #28	SEC24A (ENSCJPG00005005137) #29	SAR1B (ENSCJPG00005005136) #30	JADE2 (ENSCJPG00005005135) #31	UBE2B (ENSCJPG00005005133) #33	PPP2CA (ENSCJPG00005005132) #34	SKP1 (ENSCJPG00005005131) #35	TCF7 (ENSCJPG00005005130) #36	VDAC1 (ENSCJPG00005005127)	C5orf15 (ENSCJPG00005005126)
Anatidae	ANCESTRAL SPECIES	15	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.d ##15	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000165985	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b
Pink-footed goose	MODERN SPECIES	9	MYOT (ENSABRG00000004346)	ENSABRG00000004354 #8	HNRNPA0 (ENSABRG00000004357) #9	KLHL3 (ENSABRG00000004383) #7	ENSABRG00000004924	SPOCK1 (ENSABRG00000004940) #10	TRPC7 (ENSABRG00000004975) #11	ENSABRG00000004996 #12	SMAD5 (ENSABRG00000005002) #13	TGFBI (ENSABRG00000005025) #14	ENSABRG00000005046 ##15	ENSABRG00000005052 #15	ENSABRG00000005060 #16	SLC25A48 (ENSABRG00000005075) #18	CXCL14 (ENSABRG00000005107) #20	MACROH2A1 (ENSABRG00000005120) #22	ENSABRG00000005145	PCBD2 (ENSABRG00000005148) #24	TXNDC15 (ENSABRG00000005150) #25	C5orf24 (ENSABRG00000005158) #26	DDX46 (ENSABRG00000005167) #27	CAMLG (ENSABRG00000005194) #28	SEC24A (ENSABRG00000005396) #29	SAR1B (ENSABRG00000011759) #30	JADE2 (ENSABRG00000011766) #31	UBE2B (ENSABRG00000011776) #33	PPP2CA (ENSABRG00000011781) #34	SKP1 (ENSABRG00000011783) #35	TCF7 (ENSABRG00000011798) #36	VDAC1 (ENSABRG00000011834)	C5orf15 (ENSABRG00000011842)
Duck	MODERN SPECIES	5	PKD2L2 (ENSAPLG00000012989)	MYOT (ENSAPLG00000012838)	ENSAPLG00000011420 #8	HNRNPA0 (ENSAPLG00000017729) #9	KLHL3 (ENSAPLG00000000978) #7	SPOCK1 (ENSAPLG00000002554) #10	TRPC7 (ENSAPLG00000002677) #11	ENSAPLG00000030156 #12	SMAD5 (ENSAPLG00000003593) #13	ENSAPLG00000030584 ##15	ENSAPLG00000004923 #15	ENSAPLG00000005001 #16	SLC25A48 (ENSAPLG00000005100) #18	CXCL14 (ENSAPLG00000005214) #20	NEUROG1 (ENSAPLG00000031251) #21	MACROH2A1 (ENSAPLG00000005243) #22	PITX1 (ENSAPLG00000028077)	PCBD2 (ENSAPLG00000013164) #24	TXNDC15 (ENSAPLG00000017719) #25	C5orf24 (ENSAPLG00000001548) #26	DDX46 (ENSAPLG00000013208) #27	CAMLG (ENSAPLG00000013700) #28	ENSAPLG00000013847	SAR1B (ENSAPLG00000007369) #30	JADE2 (ENSAPLG00000014696) #31	UBE2B (ENSAPLG00000014846) #33	PPP2CA (ENSAPLG00000014864) #34	SKP1 (ENSAPLG00000015147) #35	TCF7 (ENSAPLG00000015177) #36	VDAC1 (ENSAPLG00000015267)	C5orf15 (ENSAPLG00000016800)
Neognathae_b	ANCESTRAL SPECIES	16	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.d ##15	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b
Passeriformes	ANCESTRAL SPECIES	14	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.bb ##35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b	ENSGT00440000037499
Great tit	MODERN SPECIES	4	ENSPMJG00000008751 #8	HNRNPA0 (ENSPMJG00000008753) #9	KLHL3 (ENSPMJG00000008754) #7	SPOCK1 (ENSPMJG00000008764) #10	TRPC7 (ENSPMJG00000008773) #11	ENSPMJG00000009566 #12	SMAD5 (ENSPMJG00000009567) #13	TGFBI (ENSPMJG00000009604) #14	LECT2 (ENSPMJG00000009607) #15	ENSPMJG00000009608 #16	ENSPMJG00000009609 #17	SLC25A48 (ENSPMJG00000009610) #18	CXCL14 (ENSPMJG00000009614) #20	NEUROG1 (ENSPMJG00000009622) #21	ENSPMJG00000009624	MACROH2A1 (ENSPMJG00000009625) #22	ENSPMJG00000009628	PCBD2 (ENSPMJG00000009629) #24	TXNDC15 (ENSPMJG00000009630) #25	C5orf24 (ENSPMJG00000009631) #26	DDX46 (ENSPMJG00000009632) #27	CAMLG (ENSPMJG00000009633) #28	SEC24A (ENSPMJG00000009634) #29	SAR1B (ENSPMJG00000009641) #30	JADE2 (ENSPMJG00000009659) #31	UBE2B (ENSPMJG00000009661) #33	PPP2CA (ENSPMJG00000009662) #34	SKP1 (ENSPMJG00000009663) ##35	TCF7 (ENSPMJG00000009664) #36	ENSPMJG00000009665	VDAC1 (ENSPMJG00000009676)
Passeriformes_d	ANCESTRAL SPECIES	15	ENSGT00950000183033.a.b.b	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.bb ##35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b	ENSGT00440000037499
Flycatcher	MODERN SPECIES	4	MYOT (ENSFALG00000007614)	ENSFALG00000014359 #8	ENSFALG00000008105 #7	ENSFALG00000014395	ENSFALG00000008101 #10	TRPC7 (ENSFALG00000008079) #11	ENSFALG00000027875 #12	SMAD5 (ENSFALG00000008067) #13	ENSFALG00000024691	TGFBI (ENSFALG00000008035) #14	LECT2 (ENSFALG00000008019) #15	FBXL21P (ENSFALG00000028067) #16	ENSFALG00000028153 #17	SLC25A48 (ENSFALG00000007985) #18	CXCL14 (ENSFALG00000007978) #20	MACROH2A1 (ENSFALG00000007972) #22	PITX1 (ENSFALG00000026628)	PCBD2 (ENSFALG00000024599) #24	TXNDC15 (ENSFALG00000007957) #25	C5orf24 (ENSFALG00000027320) #26	DDX46 (ENSFALG00000007947) #27	CAMLG (ENSFALG00000007942) #28	SEC24A (ENSFALG00000007938) #29	SAR1B (ENSFALG00000007931) #30	JADE2 (ENSFALG00000024209) #31	UBE2B (ENSFALG00000026103) #33	PPP2CA (ENSFALG00000024680) #34	SKP1 (ENSFALG00000007917) ##35	TCF7 (ENSFALG00000023633) #36	VDAC1 (ENSFALG00000007902)	C5orf15 (ENSFALG00000028754)
Passeriformes_g	ANCESTRAL SPECIES	15	ENSGT00950000183033.a.b.b	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b	ENSGT00440000037499
Passeroidea	ANCESTRAL SPECIES	15	ENSGT00950000183033.a.b.b	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b	ENSGT00440000037499
Common canary	MODERN SPECIES	16	FAM13B (ENSSCAG00000011102)	MYOT (ENSSCAG00000011092)	ENSSCAG00000011089 #8	ENSSCAG00000011086	KLHL3 (ENSSCAG00000011076) #7	SPOCK1 (ENSSCAG00000011070) #10	TRPC7 (ENSSCAG00000011002) #11	ENSSCAG00000010987 #12	SMAD5 (ENSSCAG00000010982) #13	TGFBI (ENSSCAG00000010973) #14	LECT2 (ENSSCAG00000010969) #15	ENSSCAG00000010964 #16	ENSSCAG00000010962 #17	SLC25A48 (ENSSCAG00000010961) #18	CXCL14 (ENSSCAG00000010960) #20	MACROH2A1 (ENSSCAG00000010954) #22	PITX1 (ENSSCAG00000010951)	PCBD2 (ENSSCAG00000010942) #24	TXNDC15 (ENSSCAG00000010936) #25	C5orf24 (ENSSCAG00000010932) #26	DDX46 (ENSSCAG00000010927) #27	CAMLG (ENSSCAG00000010922) #28	SEC24A (ENSSCAG00000010912) #29	SAR1B (ENSSCAG00000010903) #30	JADE2 (ENSSCAG00000010894) #31	UBE2B (ENSSCAG00000010887) #33	PPP2CA (ENSSCAG00000010878) #34	SKP1 (ENSSCAG00000010873) #35	TCF7 (ENSSCAG00000010869) #36	VDAC1 (ENSSCAG00000010861)	C5orf15 (ENSSCAG00000010858)
Zebra finch	MODERN SPECIES	4	FAM13B (ENSTGUG00000001177)	MYOT (ENSTGUG00000001189)	ENSTGUG00000001193 #8	KLHL3 (ENSTGUG00000001194) #7	SPOCK1 (ENSTGUG00000001204) #10	TRPC7 (ENSTGUG00000001207) #11	ENSTGUG00000027485 #12	SMAD5 (ENSTGUG00000001214) #13	TGFBI (ENSTGUG00000001216) #14	ENSTGUG00000001227 #15	ENSTGUG00000001232 #16	ENSTGUG00000001237 #17	SLC25A48 (ENSTGUG00000001239) #18	CXCL14 (ENSTGUG00000017226) #20	NEUROG1 (ENSTGUG00000001245) #21	MACROH2A1 (ENSTGUG00000001246) #22	PITX1 (ENSTGUG00000001251)	PCBD2 (ENSTGUG00000019159) #24	TXNDC15 (ENSTGUG00000027749) #25	C5orf24 (ENSTGUG00000028499) #26	DDX46 (ENSTGUG00000001260) #27	CAMLG (ENSTGUG00000001268) #28	SEC24A (ENSTGUG00000001269) #29	SAR1B (ENSTGUG00000027303) #30	JADE2 (ENSTGUG00000001284) #31	UBE2B (ENSTGUG00000022464) #33	PPP2CA (ENSTGUG00000001287) #34	SKP1 (ENSTGUG00000001291) #35	TCF7 (ENSTGUG00000001295) #36	VDAC1 (ENSTGUG00000001300)	C5orf15 (ENSTGUG00000001302)
Medium ground finch	MODERN SPECIES	11	ENSGFOG00000003804	FAM13B (ENSGFOG00000003692)	ENSGFOG00000003603	ENSGFOG00000003590 #8	KLHL3 (ENSGFOG00000003571) #7	SPOCK1 (ENSGFOG00000003558) #10	TRPC7 (ENSGFOG00000003338) #11	ENSGFOG00000003303 #12	SMAD5 (ENSGFOG00000003289) #13	TGFBI (ENSGFOG00000002897) #14	LECT2 (ENSGFOG00000002844) #15	ENSGFOG00000002830 #16	ENSGFOG00000002815 #17	SLC25A48 (ENSGFOG00000002724) #18	CXCL14 (ENSGFOG00000002706) #20	MACROH2A1 (ENSGFOG00000002690) #22	PCBD2 (ENSGFOG00000002646) #24	C5orf24 (ENSGFOG00000002637) #26	DDX46 (ENSGFOG00000002488) #27	CAMLG (ENSGFOG00000002451) #28	SEC24A (ENSGFOG00000002418) #29	SAR1B (ENSGFOG00000002405) #30	JADE2 (ENSGFOG00000002376) #31	UBE2B (ENSGFOG00000002352) #33	PPP2CA (ENSGFOG00000002331) #34	SKP1 (ENSGFOG00000002318) ##35	TCF7 (ENSGFOG00000002284) #36	VDAC1 (ENSGFOG00000002261)	C5orf15 (ENSGFOG00000002233)	FSTL4 (ENSGFOG00000002205)	RAPGEF6 (ENSGFOG00000002089)
Neognathae_c	ANCESTRAL SPECIES	19	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.d ##15	ENSGT00390000015484.c #15	ENSGT00940000159491 #16	ENSGT00390000015384 #17	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000156580 #33	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35	ENSGT00940000159831 #36	ENSGT00950000182869.e.a.b
Golden eagle	MODERN SPECIES	14	HNRNPA0 (ENSACCG00020015921) #9	KLHL3 (ENSACCG00020015940) #7	ENSACCG00020015968	SPOCK1 (ENSACCG00020015988) #10	TRPC7 (ENSACCG00020016017) #11	ENSACCG00020016048 #12	SMAD5 (ENSACCG00020016058) #13	TGFBI (ENSACCG00020016071) #14	ENSACCG00020016086 ##15	ENSACCG00020016097 #15	ENSACCG00020016103 #16	ENSACCG00020016112 #17	SLC25A48 (ENSACCG00020016127) #18	CXCL14 (ENSACCG00020016148) #20	NEUROG1 (ENSACCG00020016159) #21	MACROH2A1 (ENSACCG00020016171) #22	PITX1 (ENSACCG00020009463)	CATSPER3 (ENSACCG00020009481)	PCBD2 (ENSACCG00020009501) #24	TXNDC15 (ENSACCG00020009510) #25	C5orf24 (ENSACCG00020009527) #26	DDX46 (ENSACCG00020009551) #27	CAMLG (ENSACCG00020009579) #28	ENSACCG00020009593	SAR1B (ENSACCG00020009625) #30	JADE2 (ENSACCG00020009669) #31	UBE2B (ENSACCG00020009706) #33	PPP2CA (ENSACCG00020009725) #34	SKP1 (ENSACCG00020009740) #35	TCF7 (ENSACCG00020009771) #36	VDAC1 (ENSACCG00020009806)
Kakapo	MODERN SPECIES	6	ENSSHBG00005008001	FAM13B (ENSSHBG00005007860)	PKD2L2 (ENSSHBG00005007766)	MYOT (ENSSHBG00005007750)	HNRNPA0 (ENSSHBG00005007726) #9	KLHL3 (ENSSHBG00005007688) #7	SPOCK1 (ENSSHBG00005007661) #10	SMAD5 (ENSSHBG00005007633) #13	TGFBI (ENSSHBG00005007609) #14	ENSSHBG00005007597 ##15	ENSSHBG00005007584 #15	ENSSHBG00005007567 #16	ENSSHBG00005007552 #17	SLC25A48 (ENSSHBG00005007537) #18	NEUROG1 (ENSSHBG00005007501) #21	MACROH2A1 (ENSSHBG00005007476) #22	PITX1 (ENSSHBG00005007456)	PCBD2 (ENSSHBG00005007449) #24	TXNDC15 (ENSSHBG00005007436) #25	C5orf24 (ENSSHBG00005007424) #26	DDX46 (ENSSHBG00005007082) #27	CAMLG (ENSSHBG00005007012) #28	SEC24A (ENSSHBG00005006963) #29	SAR1B (ENSSHBG00005006933) #30	JADE2 (ENSSHBG00005006895) #31	UBE2B (ENSSHBG00005006853) #33	PPP2CA (ENSSHBG00005006833) #34	SKP1 (ENSSHBG00005006814) #35	TCF7 (ENSSHBG00005006790) #36	VDAC1 (ENSSHBG00005006771)	C5orf15 (ENSSHBG00005006759)
African ostrich	MODERN SPECIES	835																MACROH2A1 (ENSSCUG00000015942) #22	ENSSCUG00000015947	CATSPER3 (ENSSCUG00000015949)	PCBD2 (ENSSCUG00000015952) #24	ENSSCUG00000015955 #25	C5orf24 (ENSSCUG00000015956) #26	DDX46 (ENSSCUG00000015957) #27	CAMLG (ENSSCUG00000015962) #28	SEC24A (ENSSCUG00000016032) #29	SAR1B (ENSSCUG00000016106) #30
Australian saltwater crocodile	MODERN SPECIES	34	KLHL3 (ENSCPRG00005011333) #7	ENSCPRG00005011310	ENSCPRG00005011293	SPOCK1 (ENSCPRG00005011286) #10	TRPC7 (ENSCPRG00005011244) #11	ENSCPRG00005011231 #12	SMAD5 (ENSCPRG00005011228) #13	TGFBI (ENSCPRG00005010905) #14	ENSCPRG00005010873 ##15	ENSCPRG00005010872 #15	ENSCPRG00005010859 #15	ENSCPRG00005010853 #16	SLC25A48 (ENSCPRG00005010833) #18	CXCL14 (ENSCPRG00005010826) #20	NEUROG1 (ENSCPRG00005010825) #21	MACROH2A1 (ENSCPRG00005010820) #22	CATSPER3 (ENSCPRG00005010812)	PCBD2 (ENSCPRG00005010811) #24	TXNDC15 (ENSCPRG00005010809) #25	C5orf24 (ENSCPRG00005010806) #26	DDX46 (ENSCPRG00005010752) #27	CAMLG (ENSCPRG00005010742) #28	SEC24A (ENSCPRG00005010507) #29	ENSCPRG00005010444	JADE2 (ENSCPRG00005010436) #31	CDKN2AIPNL (ENSCPRG00005010431)	UBE2B (ENSCPRG00005010425) #33	CDKL3 (ENSCPRG00005010415)	PPP2CA (ENSCPRG00005010409) #34	SKP1 (ENSCPRG00005010404) ##35	TCF7 (ENSCPRG00005010397) #36
Cryptodira	ANCESTRAL SPECIES	15	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT00950000186323	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c.a.a.b #15	ENSGT00390000015484.c.a.a.a #15	ENSGT00390000015484.c.a.b #15	ENSGT00940000159491.c.a #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT00950000186323	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c.a.a.b #15	ENSGT00390000015484.c.a.a.a.a.b #15	ENSGT00390000015484.c.a.a.a.b #15	ENSGT00390000015484.c.a.b #15	ENSGT00940000159491.c.a #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.bb ##35
Testudinidae	ANCESTRAL SPECIES	16	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT00950000186323	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c.a.a.b #15	ENSGT01000000222195	ENSGT00390000015484.c.a.a.a.a.b #15	ENSGT00390000015484.c.a.b #15	ENSGT00940000159491.c.a #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.ab.b #35
Abingdon island giant tortoise	MODERN SPECIES	933													SLC25A48 (ENSCABG00000000993) #18	CXCL14 (ENSCABG00000000997) #20	NEUROG1 (ENSCABG00000000999) #21	MACROH2A1 (ENSCABG00000001001) #22	PITX1 (ENSCABG00000001007)	CATSPER3 (ENSCABG00000001011)	PCBD2 (ENSCABG00000001064) #24	TXNDC15 (ENSCABG00000001067) #25	C5orf24 (ENSCABG00000001070) #26
Goode s thornscrub tortoise	MODERN SPECIES	22	HNRNPA0 (ENSGEVG00005006346) #9	ENSGEVG00005006359 #7	SPOCK1 (ENSGEVG00005006377) #10	ENSGEVG00005006418	TRPC7 (ENSGEVG00005006453) #11	ENSGEVG00005006606 #12	SMAD5 (ENSGEVG00005006615) #13	TGFBI (ENSGEVG00005006630) #14	ENSGEVG00005006660 #15	ENSGEVG00005006693	ENSGEVG00005006710 #16	ENSGEVG00005006727 #15	SLC25A48 (ENSGEVG00005006740) #18	CXCL14 (ENSGEVG00005006774) #20	NEUROG1 (ENSGEVG00005006791) #21	MACROH2A1 (ENSGEVG00005006827) #22	PITX1 (ENSGEVG00005006852)	CATSPER3 (ENSGEVG00005006893)	TXNDC15 (ENSGEVG00005006986) #25	C5orf24 (ENSGEVG00005007023) #26	DDX46 (ENSGEVG00005007169) #27	CAMLG (ENSGEVG00005007877) #28	SEC24A (ENSGEVG00005007906) #29	SAR1B (ENSGEVG00005007964) #30	JADE2 (ENSGEVG00005007986) #31	CDKN2AIPNL (ENSGEVG00005008010)	UBE2B (ENSGEVG00005008019) #33	CDKL3 (ENSGEVG00005008046)	PPP2CA (ENSGEVG00005008076) #34	SKP1 (ENSGEVG00005008099) #35	TCF7 (ENSGEVG00005008118) #36
Emydidae	ANCESTRAL SPECIES	11	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437.hc #13	ENSGT00530000063860.a #14	ENSGT00390000015484.c.a.a.b #15	ENSGT00390000015484.c.a.a.a.a.b #15	ENSGT00390000015484.c.a.a.a.a.a #15	ENSGT00390000015484.c.a.a.a.b #15	ENSGT00390000015484.c.a.b #15	ENSGT00940000159491.c.a #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.bb ##35
painted turtle	MODERN SPECIES	17	HNRNPA0 (ENSCPBG00000008738) #9	KLHL3 (ENSCPBG00000008722) #7	TRPC7 (ENSCPBG00000008697) #11	ENSCPBG00000008690 #12	SMAD5 (ENSCPBG00000008688) #13	TGFBI (ENSCPBG00000008680) #14	ENSCPBG00000008677 #15	ENSCPBG00000008671 #15	ENSCPBG00000008667 #15	ENSCPBG00000008659 #15	ENSCPBG00000008655 #15	ENSCPBG00000008646 #16	SLC25A48 (ENSCPBG00000008631) #18	CXCL14 (ENSCPBG00000008620) #20	NEUROG1 (ENSCPBG00000008612) #21	MACROH2A1 (ENSCPBG00000008601) #22	CATSPER3 (ENSCPBG00000008593)	PCBD2 (ENSCPBG00000008589) #24	TXNDC15 (ENSCPBG00000008581) #25	C5orf24 (ENSCPBG00000008578) #26	DDX46 (ENSCPBG00000008261) #27	CAMLG (ENSCPBG00000008225) #28	SEC24A (ENSCPBG00000008211) #29	SAR1B (ENSCPBG00000008203) #30	JADE2 (ENSCPBG00000007741) #31	CDKN2AIPNL (ENSCPBG00000007712)	UBE2B (ENSCPBG00000007706) #33	CDKL3 (ENSCPBG00000007685)	PPP2CA (ENSCPBG00000007670) #34	SKP1 (ENSCPBG00000007664) ##35	TCF7 (ENSCPBG00000007623) #36
Three-toed box turtle	MODERN SPECIES	306	SPOCK1 (ENSTMTG00000021453) #10	TRPC7 (ENSTMTG00000021396) #11	ENSTMTG00000021385 #12	SMAD5 (ENSTMTG00000021379) #13	TGFBI (ENSTMTG00000021370) #14	ENSTMTG00000021365 #15	ENSTMTG00000021362 #15	ENSTMTG00000021359 #15	ENSTMTG00000021348 #15	ENSTMTG00000021341 #15	ENSTMTG00000021335 #16	SLC25A48 (ENSTMTG00000021328) #18	CXCL14 (ENSTMTG00000021319) #20	NEUROG1 (ENSTMTG00000021314) #21	ENSTMTG00000021310	MACROH2A1 (ENSTMTG00000021300) #22	PITX1 (ENSTMTG00000021296)	PCBD2 (ENSTMTG00000021293) #24	TXNDC15 (ENSTMTG00000021288) #25	C5orf24 (ENSTMTG00000021283) #26	DDX46 (ENSTMTG00000021134) #27	CAMLG (ENSTMTG00000021110) #28	SEC24A (ENSTMTG00000021102) #29	SAR1B (ENSTMTG00000021093) #30	JADE2 (ENSTMTG00000021073) #31	CDKN2AIPNL (ENSTMTG00000021068)	UBE2B (ENSTMTG00000021063) #33	CDKL3 (ENSTMTG00000021054)	PPP2CA (ENSTMTG00000021047) #34	SKP1 (ENSTMTG00000021043) ##35	TCF7 (ENSTMTG00000021039) #36
Chinese turtle	MODERN SPECIES	525	ENSPSIG00000000035	KLHL3 (ENSPSIG00000015230) #7	SPOCK1 (ENSPSIG00000016274) #10	ENSPSIG00000003612	ENSPSIG00000000036	TRPC7 (ENSPSIG00000003622) #11	SMAD5 (ENSPSIG00000003731) #13	TGFBI (ENSPSIG00000003772) #14	ENSPSIG00000004007 #15	ENSPSIG00000004018 #15	ENSPSIG00000004021 #15	ENSPSIG00000004068 #16	SLC25A48 (ENSPSIG00000004099) #18	CXCL14 (ENSPSIG00000004117) #20	NEUROG1 (ENSPSIG00000004125) #21	MACROH2A1 (ENSPSIG00000004160) #22	ENSPSIG00000000037	PITX1 (ENSPSIG00000004242)	CATSPER3 (ENSPSIG00000004301)	PCBD2 (ENSPSIG00000004411) #24	TXNDC15 (ENSPSIG00000004419) #25	C5orf24 (ENSPSIG00000004507) #26	DDX46 (ENSPSIG00000004522) #27	CAMLG (ENSPSIG00000004577) #28	SEC24A (ENSPSIG00000004594) #29	SAR1B (ENSPSIG00000004800) #30	JADE2 (ENSPSIG00000004841) #31	CDKN2AIPNL (ENSPSIG00000004956)	UBE2B (ENSPSIG00000004966) #33	CDKL3 (ENSPSIG00000004969)	PPP2CA (ENSPSIG00000004984) #34
Lepidosauria	ANCESTRAL SPECIES	15	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT00950000186323	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00390000015484.d ##15	ENSGT00940000159491 #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000160154 #30	ENSGT00940000164397.b	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000161122	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT00950000186323	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00940000159491 #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000164397.b	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.bb ##35
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000161122	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000167175	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT00950000186323	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00940000159491 #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000164397.b	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.bb ##35
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000005070	ENSPMRG00000005068 #8	ENSPMRG00000005059	KLHL3 (ENSPMRG00000005048) #7	SPOCK1 (ENSPMRG00000005039) #10	ENSPMRG00000005036	TRPC7 (ENSPMRG00000005022) #11	ENSPMRG00000005017 #12	SMAD5 (ENSPMRG00000005010) #13	ENSPMRG00000012148	TGFBI (ENSPMRG00000012138) #14	ENSPMRG00000012134 #16	SLC25A48 (ENSPMRG00000012132) #18	ENSPMRG00000012131	NEUROG1 (ENSPMRG00000012128) #21	MACROH2A1 (ENSPMRG00000012125) #22	PITX1 (ENSPMRG00000012122)	CATSPER3 (ENSPMRG00000012117)	PCBD2 (ENSPMRG00000012115) #24	TXNDC15 (ENSPMRG00000012113) #25	C5orf24 (ENSPMRG00000012110) #26	DDX46 (ENSPMRG00000012038) #27	ENSPMRG00000012023 #28	SEC24A (ENSPMRG00000011870) #29	ENSPMRG00000011845	ENSPMRG00000011842 #31	ENSPMRG00000011840 #31	CDKN2AIPNL (ENSPMRG00000011837)	UBE2B (ENSPMRG00000011833) #33	CDKL3 (ENSPMRG00000011826)	PPP2CA (ENSPMRG00000011825) #34
Argentine black and white tegu	MODERN SPECIES	1	MYOT (ENSSMRG00000017389)	ENSSMRG00000017392 #8	ENSSMRG00000017394	KLHL3 (ENSSMRG00000017413) #7	ENSSMRG00000017419	SPOCK1 (ENSSMRG00000017432) #10	ENSSMRG00000017446	TRPC7 (ENSSMRG00000017452) #11	ENSSMRG00000017493 #12	SMAD5 (ENSSMRG00000017494) #13	TGFBI (ENSSMRG00000017510) #14	ENSSMRG00000017511 #16	SLC25A48 (ENSSMRG00000017512) #18	CXCL14 (ENSSMRG00000017516) #20	NEUROG1 (ENSSMRG00000017521) #21	MACROH2A1 (ENSSMRG00000017522) #22	PITX1 (ENSSMRG00000017537)	CATSPER3 (ENSSMRG00000017557)	PCBD2 (ENSSMRG00000017579) #24	TXNDC15 (ENSSMRG00000017580) #25	C5orf24 (ENSSMRG00000017582) #26	DDX46 (ENSSMRG00000017584) #27	CAMLG (ENSSMRG00000017636) #28	SEC24A (ENSSMRG00000017637) #29	ENSSMRG00000017681	JADE2 (ENSSMRG00000017697) #31	CDKN2AIPNL (ENSSMRG00000017700)	UBE2B (ENSSMRG00000017701) #33	CDKL3 (ENSSMRG00000017704)	PPP2CA (ENSSMRG00000017705) #34	SKP1 (ENSSMRG00000017706) #35
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00950000183033.a.b.b	ENSGT00940000161122	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00940000159491 #16	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000164397.b	ENSGT00940000160154 #30	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34
Elapidae	ANCESTRAL SPECIES	2	ENSGT01030000235081	ENSGT00950000183033.a.b.b	ENSGT00940000161122	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a.f #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000164397.b	ENSGT00940000158570 #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.bb ##35
Indian cobra	MODERN SPECIES	1	PKD2L2 (ENSNNAG00000002403)	MYOT (ENSNNAG00000002422)	ENSNNAG00000002430 #8	HNRNPA0 (ENSNNAG00000002435) #9	KLHL3 (ENSNNAG00000002444) #7	SPOCK1 (ENSNNAG00000002463) #10	ENSNNAG00000002470 #10	TRPC7 (ENSNNAG00000002502) #11	ENSNNAG00000002605 #12	SMAD5 (ENSNNAG00000002611) #13	TGFBI (ENSNNAG00000002618) #14	ENSNNAG00000002628 #16	SLC25A48 (ENSNNAG00000002634) #18	CXCL14 (ENSNNAG00000002654) #20	NEUROG1 (ENSNNAG00000002661) #21	MACROH2A1 (ENSNNAG00000002667) #22	PITX1 (ENSNNAG00000002679)	CATSPER3 (ENSNNAG00000002694)	PCBD2 (ENSNNAG00000002727) #24	TXNDC15 (ENSNNAG00000002732) #25	C5orf24 (ENSNNAG00000002736) #26	DDX46 (ENSNNAG00000002747) #27	ENSNNAG00000002763 #28	SEC24A (ENSNNAG00000002983) #29	ENSNNAG00000006501	JADE2 (ENSNNAG00000006519) #31	CDKN2AIPNL (ENSNNAG00000006543)	UBE2B (ENSNNAG00000006559) #33	CDKL3 (ENSNNAG00000006597)	PPP2CA (ENSNNAG00000006645) #34	SKP1 (ENSNNAG00000006670) ##35
Elapidae_a	ANCESTRAL SPECIES	11	ENSGT01030000235081	ENSGT00950000183033.a.b.b	ENSGT00940000161122	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a.f #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000164397.b	ENSGT00940000158570.d #31	ENSGT00940000158570.c #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34
Acanthophiinae	ANCESTRAL SPECIES	12	ENSGT01030000235081	ENSGT00950000183033.a.b.b	ENSGT00940000161122	ENSGT00940000159795.a	ENSGT00940000163511 #8	ENSGT00940000154808.a.b #9	ENSGT00940000157891 #7	ENSGT00940000158371 #10	ENSGT01060000248588.a.c.a.f #11	ENSGT01030000235204 #12	ENSGT00940000155437 #13	ENSGT00530000063860.a #14	ENSGT00940000159354 #18	ENSGT00390000000618 #20	ENSGT00940000162170 #21	ENSGT00940000159541 #22	ENSGT00940000154518.a	ENSGT00940000161455	ENSGT00390000007221.a.a #24	ENSGT00390000002845 #25	ENSGT00390000014889 #26	ENSGT00940000157753 #27	ENSGT00390000015996 #28	ENSGT00950000182924.B.a.b #29	ENSGT00940000164397.b	ENSGT00940000158570.d #31	ENSGT00940000157177	ENSGT00940000156580 #33	ENSGT00940000161317	ENSGT00550000074618.a.a #34	ENSGT00390000012652.bb ##35
Eastern brown snake	MODERN SPECIES	6	FAM13B (ENSPTXG00000013417)	PKD2L2 (ENSPTXG00000013259)	MYOT (ENSPTXG00000013252)	ENSPTXG00000013251 #8	HNRNPA0 (ENSPTXG00000013250) #9	KLHL3 (ENSPTXG00000013249) #7	SPOCK1 (ENSPTXG00000013248) #10	TRPC7 (ENSPTXG00000013208) #11	ENSPTXG00000013205 #12	SMAD5 (ENSPTXG00000013204) #13	TGFBI (ENSPTXG00000013203) #14	ENSPTXG00000013202 #16	SLC25A48 (ENSPTXG00000013201) #18	CXCL14 (ENSPTXG00000013200) #20	NEUROG1 (ENSPTXG00000013199) #21	MACROH2A1 (ENSPTXG00000007513) #22	PITX1 (ENSPTXG00000007511)	CATSPER3 (ENSPTXG00000007508)	PCBD2 (ENSPTXG00000007506) #24	TXNDC15 (ENSPTXG00000007504) #25	C5orf24 (ENSPTXG00000007502) #26	DDX46 (ENSPTXG00000007500) #27	CAMLG (ENSPTXG00000007498) #28	SEC24A (ENSPTXG00000007493) #29	ENSPTXG00000007491	JADE2 (ENSPTXG00000007487) #31	CDKN2AIPNL (ENSPTXG00000007485)	UBE2B (ENSPTXG00000007484) #33	CDKL3 (ENSPTXG00000007480)	PPP2CA (ENSPTXG00000007479) #34	SKP1 (ENSPTXG00000007477) ##35
Mainland tiger snake	MODERN SPECIES	4	ENSNSUG00000003074 #8	HNRNPA0 (ENSNSUG00000003078) #9	KLHL3 (ENSNSUG00000003079) #7	SPOCK1 (ENSNSUG00000003088) #10	ENSNSUG00000003090	ENSNSUG00000003091	ENSNSUG00000003093	TRPC7 (ENSNSUG00000003094) #11	ENSNSUG00000003172 #12	SMAD5 (ENSNSUG00000003173) #13	TGFBI (ENSNSUG00000003177) #14	ENSNSUG00000003227 #16	SLC25A48 (ENSNSUG00000003228) #18	CXCL14 (ENSNSUG00000003229) #20	NEUROG1 (ENSNSUG00000003231) #21	MACROH2A1 (ENSNSUG00000003232) #22	PITX1 (ENSNSUG00000003233)	CATSPER3 (ENSNSUG00000003236)	PCBD2 (ENSNSUG00000003269) #24	TXNDC15 (ENSNSUG00000003272) #25	C5orf24 (ENSNSUG00000003273) #26	DDX46 (ENSNSUG00000003281) #27	CAMLG (ENSNSUG00000004455) #28	SEC24A (ENSNSUG00000004456) #29	ENSNSUG00000004463	JADE2 (ENSNSUG00000004469) #31	CDKN2AIPNL (ENSNSUG00000004477)	UBE2B (ENSNSUG00000004480) #33	CDKL3 (ENSNSUG00000004483)	PPP2CA (ENSNSUG00000004490) #34	SKP1 (ENSNSUG00000004491) #35
Blue-lipped sea krait	MODERN SPECIES	1349																MACROH2A1 (ENSLLTG00000004446) #22	ENSLLTG00000004437
Lizard	MODERN SPECIES	837						ENSACAG00000035973	ENSACAG00000036627	TRPC7 (ENSACAG00000000336) #11	ENSACAG00000036444 #12	SMAD5 (ENSACAG00000000815) #13	TGFBI (ENSACAG00000000858) #14	fbxl21p (ENSACAG00000045147) #16	SLC25A48 (ENSACAG00000001174) #18	CXCL14 (ENSACAG00000042727) #20	NEUROG1 (ENSACAG00000001255) #21	MACROH2A1 (ENSACAG00000001269) #22	ENSACAG00000035237	ENSACAG00000043939	ENSACAG00000045294	CATSPER3 (ENSACAG00000001386)	PCBD2 (ENSACAG00000042954) #24	TXNDC15 (ENSACAG00000001427) #25	DDX46 (ENSACAG00000001437) #27	CAMLG (ENSACAG00000001591) #28	SEC24A (ENSACAG00000001623) #29	SAR1B (ENSACAG00000001850) #30	ENSACAG00000044786	ENSACAG00000035697	JADE2 (ENSACAG00000001897) #31
tuatara	MODERN SPECIES	1050							TRPC7 (ENSSPUG00000008551) #11	ENSSPUG00000008560	SMAD5 (ENSSPUG00000008573) #13	TGFBI (ENSSPUG00000008602) #14	LECT2 (ENSSPUG00000008638) ##15	ENSSPUG00000008674 #16	SLC25A48 (ENSSPUG00000008696) #18	CXCL14 (ENSSPUG00000008767) #20	NEUROG1 (ENSSPUG00000008778) #21	MACROH2A1 (ENSSPUG00000008802) #22	PITX1 (ENSSPUG00000008839)	CATSPER3 (ENSSPUG00000008855)	PCBD2 (ENSSPUG00000008886) #24	TXNDC15 (ENSSPUG00000008895) #25	C5orf24 (ENSSPUG00000008904) #26	DDX46 (ENSSPUG00000008985) #27	CAMLG (ENSSPUG00000009378) #28	SEC24A (ENSSPUG00000009401) #29	SAR1B (ENSSPUG00000009441) #30	JADE2 (ENSSPUG00000009471) #31	ENSSPUG00000009508	UBE2B (ENSSPUG00000009524) #33	CDKL3 (ENSSPUG00000009556)	PPP2CA (ENSSPUG00000009588) #34	SKP1 (ENSSPUG00000009612) #35