Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00390000000406	ENSGT00940000155394	ENSGT00940000158014	ENSGT00940000157713	ENSGT00940000154980	ENSGT00530000063074.b.b	ENSGT00940000156622	ENSGT00390000002417	ENSGT00940000153362.a.hb.b.a	ENSGT00440000039564.b	ENSGT00390000018775	ENSGT00940000160727	ENSGT00940000162357	ENSGT00940000162547	ENSGT00940000159670 #21	ENSGT00940000157371 #22	ENSGT00940000162576	ENSGT00940000155878 #23	ENSGT00950000182885.A.b #24	ENSGT00940000156429.x #25	ENSGT00940000156786	ENSGT00390000017998 #27	ENSGT00940000161088 #28	ENSGT00390000001116 #29	ENSGT00940000160214 #32	ENSGT00940000158153	ENSGT00940000157212.B #34	ENSGT00940000156088 #35	ENSGT00950000183039.A #37	ENSGT00390000001285	ENSGT00530000063626.b
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00390000000406	ENSGT00940000155394	ENSGT00940000158014	ENSGT00940000157713	ENSGT00940000154980	ENSGT00530000063074.b.b	ENSGT00940000156622	ENSGT00390000002417	ENSGT00940000153362.a.hb.b.a	ENSGT00440000039564.b	ENSGT00390000018775	ENSGT00940000160727	ENSGT00940000162357	ENSGT00940000162547	ENSGT00940000159670 #21	ENSGT00940000157371 #22	ENSGT00940000162576	ENSGT00940000155878 #23	ENSGT00950000182885.A.b #24	ENSGT00940000156429.x #25	ENSGT00940000156786	ENSGT00390000017998 #27	ENSGT00940000161088 #28	ENSGT00390000001116 #29	ENSGT00940000160214 #32	ENSGT00940000158153	ENSGT00940000157212.B #34	ENSGT00940000156088 #35	ENSGT00950000183039.A #37	ENSGT00390000001285	ENSGT00530000063626.b
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00390000000406	ENSGT00940000155394	ENSGT00940000158014	ENSGT00940000157713	ENSGT00940000154980	ENSGT00530000063074.b.b	ENSGT00940000156622	ENSGT00390000002417	ENSGT00940000153362.a.hb.b.a	ENSGT00440000039564.b	ENSGT00390000018775	ENSGT00940000160727	ENSGT00940000162357	ENSGT00940000162547	ENSGT00940000159670 #21	ENSGT00940000157371 #22	ENSGT00940000162576	ENSGT00940000155878 #23	ENSGT00950000182885.A.b #24	ENSGT00940000156429.x #25	ENSGT00940000156786	ENSGT00390000017998 #27	ENSGT00940000161088 #28	ENSGT00390000001116 #29	ENSGT00940000160214 #32	ENSGT00940000158153	ENSGT00940000157212.B #34	ENSGT00940000156088 #35	ENSGT00950000183039.A #37	ENSGT00390000001285	ENSGT00530000063626.b
Degu	MODERN SPECIES	88	ENSODEG00000019041 #7	FGD4 (ENSODEG00000004678) #8	BICD1 (ENSODEG00000004640) #9	ENSODEG00000005005 #10	ENSODEG00000019136 #11	ENSODEG00000019216 #12	ENSODEG00000019221 #13	ENSODEG00000005428 #14	AMN1 (ENSODEG00000005175) #15	DENND5B (ENSODEG00000004914) #16	ENSODEG00000005420 #17	ENSODEG00000005301 #18	CAPRIN2 (ENSODEG00000005454) #19	ENSODEG00000004763 #20	CAPS2 (ENSODEG00000005006) #21	KCNC2 (ENSODEG00000004528) #22	ENSODEG00000004940 #23	TPH2 (ENSODEG00000005879) #24	TBC1D15 (ENSODEG00000005472) #25	ENSODEG00000019110 #26	TMEM19 (ENSODEG00000007134) #27	THAP2 (ENSODEG00000007099) #28	ENSODEG00000007051 #29	ENSODEG00000006640 #30	ENSODEG00000005318 #31	LGR5 (ENSODEG00000005026) #32	ENSODEG00000005914 #33	PTPRR (ENSODEG00000004892) #34	PTPRB (ENSODEG00000005212) #35	ENSODEG00000004686 #36	KCNMB4 (ENSODEG00000004677) #37
Long-tailed chinchilla	MODERN SPECIES	112	ENSCLAG00000005685	NAV3 (ENSCLAG00000012036)	E2F7 (ENSCLAG00000007164)	CSRP2 (ENSCLAG00000008899)	ZDHHC17 (ENSCLAG00000011124)	ENSCLAG00000017859	OSBPL8 (ENSCLAG00000010204)	BBS10 (ENSCLAG00000007902)	ENSCLAG00000005333	PHLDA1 (ENSCLAG00000006934)	KRR1 (ENSCLAG00000005111)	GLIPR1 (ENSCLAG00000006364)	GLIPR1L2 (ENSCLAG00000006004)	GLIPR1L1 (ENSCLAG00000005153)	ENSCLAG00000004453 #21	KCNC2 (ENSCLAG00000009275) #22	ATXN7L3B (ENSCLAG00000017725)	TRHDE (ENSCLAG00000005841) #23	TPH2 (ENSCLAG00000005112) #24	TBC1D15 (ENSCLAG00000008349) #25	RAB21 (ENSCLAG00000014056)	ENSCLAG00000015447 #27	THAP2 (ENSCLAG00000013769) #28	ZFC3H1 (ENSCLAG00000007646) #29	LGR5 (ENSCLAG00000007212) #32	TSPAN8 (ENSCLAG00000006059)	PTPRR (ENSCLAG00000007361) #34	PTPRB (ENSCLAG00000005366) #35	KCNMB4 (ENSCLAG00000015315) #37	CNOT2 (ENSCLAG00000014354)	MYRFL (ENSCLAG00000006967)
Guinea pig	MODERN SPECIES	9	SYT1 (ENSCPOG00000002054)	NAV3 (ENSCPOG00000015431)	E2F7 (ENSCPOG00000007375)	CSRP2 (ENSCPOG00000031460)	ZDHHC17 (ENSCPOG00000012534)	OSBPL8 (ENSCPOG00000001130)	BBS10 (ENSCPOG00000038158)	NAP1L1 (ENSCPOG00000019420)	PHLDA1 (ENSCPOG00000003245)	KRR1 (ENSCPOG00000014353)	GLIPR1 (ENSCPOG00000014351)	ENSCPOG00000013925	ENSCPOG00000011301	GLIPR1L1 (ENSCPOG00000011726)	CAPS2 (ENSCPOG00000011709) #21	KCNC2 (ENSCPOG00000003474) #22	ATXN7L3B (ENSCPOG00000040398)	TRHDE (ENSCPOG00000007500) #23	ENSCPOG00000035901 #23	TPH2 (ENSCPOG00000005406) #24	TBC1D15 (ENSCPOG00000004522) #25	RAB21 (ENSCPOG00000004741)	TMEM19 (ENSCPOG00000025019) #27	THAP2 (ENSCPOG00000009524) #28	ZFC3H1 (ENSCPOG00000009504) #29	LGR5 (ENSCPOG00000036056) #32	TSPAN8 (ENSCPOG00000034308)	PTPRR (ENSCPOG00000005707) #34	PTPRB (ENSCPOG00000005700) #35	CNOT2 (ENSCPOG00000004756)	MYRFL (ENSCPOG00000013850)
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000004489	ENSHGLG00000044176	ENSHGLG00000008641	ENSHGLG00000033319	ENSHGLG00000039577	ENSHGLG00000008111	BBS10 (ENSHGLG00000041362)	ENSHGLG00000046259	ENSHGLG00000014189	ENSHGLG00000045931	KRR1 (ENSHGLG00000004459)	GLIPR1 (ENSHGLG00000037317)	ENSHGLG00000037384	ENSHGLG00000049301	CAPS2 (ENSHGLG00000043754) #21	KCNC2 (ENSHGLG00000008212) #22	ATXN7L3B (ENSHGLG00000020493)	ENSHGLG00000046516	TRHDE (ENSHGLG00000008926) #23	TPH2 (ENSHGLG00000009477) #24	TBC1D15 (ENSHGLG00000012156) ##25	ENSHGLG00000032222	ENSHGLG00000012420	ENSHGLG00000012561	ENSHGLG00000040461 #27	ZFC3H1 (ENSHGLG00000014297) #29	LGR5 (ENSHGLG00000004903) #32	TSPAN8 (ENSHGLG00000009287)	ENSHGLG00000048295	PTPRR (ENSHGLG00000005019) #34	ENSHGLG00000035838