Sarcopterygii	ANCESTRAL SPECIES	209											ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00420000030417	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00390000013943 #35
Tetrapoda	ANCESTRAL SPECIES	79											ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00420000030417	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00390000013943 #35	ENSGT00550000074878	ENSGT01030000234626.B
Amniota	ANCESTRAL SPECIES	1	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00420000030417	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000162065 #34	ENSGT00940000155089 #33	ENSGT00390000013943 #35
Mammalia	ANCESTRAL SPECIES	2	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00420000030417	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000162065 #34	ENSGT00940000155089 #33	ENSGT00390000013943 #35
Theria	ANCESTRAL SPECIES	4	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00420000030417	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00940000168329	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34
Eutheria	ANCESTRAL SPECIES	9	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00420000030417	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Primates	ANCESTRAL SPECIES	5	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a.n.a	ENSGT00530000063927.a.a.n.b	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Platyrrhini	ANCESTRAL SPECIES	2					ENSGT00530000063927.a.a.o.b	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00530000063927.a.a.n.b	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543.f.b ##24	ENSGT00910000146857 #23	ENSGT00940000156543.e #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Cebidae	ANCESTRAL SPECIES	5	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a.n.b	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543.f.b ##24	ENSGT00910000146857 #23	ENSGT00940000156543.e #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Cebidae_a	ANCESTRAL SPECIES	26									ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543.f.b ##24	ENSGT00910000146857 #23	ENSGT00940000156543.e #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Bolivian squirrel monkey	MODERN SPECIES	101										CCR6 (ENSSBOG00000026892) #16	CEP43 (ENSSBOG00000021544) #17	RNASET2 (ENSSBOG00000022586) #18	RPS6KA2 (ENSSBOG00000023209) #19	MPC1 (ENSSBOG00000030115) #20	SFT2D1 (ENSSBOG00000020053) #21	TBXT (ENSSBOG00000023313) #22	ENSSBOG00000030891 #23	ENSSBOG00000030466 #24	C6orf118 (ENSSBOG00000024744) #25	QKI (ENSSBOG00000036267) #26	PACRG (ENSSBOG00000036098) #27	PRKN (ENSSBOG00000019735) #28	AGPAT4 (ENSSBOG00000023179) #29	MAP3K4 (ENSSBOG00000022969) #30	PLG (ENSSBOG00000033802) #31	SLC22A3 (ENSSBOG00000024841) #32	SLC22A2 (ENSSBOG00000035664) #33	SLC22A1 (ENSSBOG00000029054) #34	IGF2R (ENSSBOG00000024078) #35	MAS1 (ENSSBOG00000019912) #36	PNLDC1 (ENSSBOG00000019135) #37
Capuchin	MODERN SPECIES	389									CCR6 (ENSCCAG00000023108) #16	CEP43 (ENSCCAG00000002534) #17	RNASET2 (ENSCCAG00000022079) #18	RPS6KA2 (ENSCCAG00000032079) #19	MPC1 (ENSCCAG00000027814) #20	SFT2D1 (ENSCCAG00000030562) #21	PRR18 (ENSCCAG00000031870)	TBXT (ENSCCAG00000024677) #22	ENSCCAG00000037393 ##24	ENSCCAG00000022749	ENSCCAG00000019705	ENSCCAG00000036924	ENSCCAG00000034417	ENSCCAG00000029815	ENSCCAG00000020853	C6orf118 (ENSCCAG00000037689) #25
Marmoset	MODERN SPECIES	16	ENSCJAG00000077331	ENSCJAG00000082400	CCR6 (ENSCJAG00000076944) #16	ENSCJAG00000082139	ENSCJAG00000077314	ENSCJAG00000076555	CEP43 (ENSCJAG00000000473) #17	ENSCJAG00000073948	ENSCJAG00000053408	ENSCJAG00000000469 #18	ENSCJAG00000077718	RPS6KA2 (ENSCJAG00000000462) #19	ENSCJAG00000012552 #20	SFT2D1 (ENSCJAG00000012533) #21	PRR18 (ENSCJAG00000012527)	TBXT (ENSCJAG00000012508) #22	PDE10A (ENSCJAG00000012410) #24	ENSCJAG00000075058	ENSCJAG00000077202	QKI (ENSCJAG00000012368) #26	PACRG (ENSCJAG00000012365) #27	PRKN (ENSCJAG00000012355) #28	AGPAT4 (ENSCJAG00000012323) #29	MAP3K4 (ENSCJAG00000012176) #30	ENSCJAG00000084439	PLG (ENSCJAG00000012132) #31	SLC22A3 (ENSCJAG00000012093) #32	SLC22A2 (ENSCJAG00000012056) #33	IGF2R (ENSCJAG00000011908) #35	ENSCJAG00000081097	PNLDC1 (ENSCJAG00000011865) #37
Mas night monkey	MODERN SPECIES	1228							UNC93A (ENSANAG00000021160)	ENSANAG00000021339	CCR6 (ENSANAG00000024393) #16	CEP43 (ENSANAG00000027428) #17	RNASET2 (ENSANAG00000025875) #18	RPS6KA2 (ENSANAG00000036583) #19	MPC1 (ENSANAG00000025179) #20	SFT2D1 (ENSANAG00000019628) #21	PRR18 (ENSANAG00000020254)	TBXT (ENSANAG00000035431) #22
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000157183.a.a	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35
Cercopithecidae	ANCESTRAL SPECIES	34	ENSGT00940000155237	ENSGT00530000063927.a.a.n.b.b.b.a	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000157183.a.a	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000157183.a.a.b	ENSGT00940000155208 #31	ENSGT00940000157183.a.a.a	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063927.a.a.n.b.b.b.a	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153095.g.b.a.a.a.b.b.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000157183.a.a.a	ENSGT00940000157183.a.a.b	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063927.a.a.n.b.b.b.a	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153095.g.b.a.a.a.b.b.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000157183.a.a.a	ENSGT00940000157183.a.a.b	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35
Macaca_a	ANCESTRAL SPECIES	26	ENSGT00950000182767.b.b.d.hb.a.a.a.a.b	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30
Crab-eating macaque	MODERN SPECIES	14	AFDN (ENSMFAG00000044776)	ENSMFAG00000047394	ENSMFAG00000032754	TTLL2 (ENSMFAG00000041604)	UNC93A (ENSMFAG00000035470)	CCR6 (ENSMFAG00000062524) #16	CEP43 (ENSMFAG00000040151) #17	ENSMFAG00000049160	RNASET2 (ENSMFAG00000039774) #18	ENSMFAG00000051223	RPS6KA2 (ENSMFAG00000032453) #19	MPC1 (ENSMFAG00000003954) #20	SFT2D1 (ENSMFAG00000039956) #21	ENSMFAG00000059048	ENSMFAG00000049559	TBXT (ENSMFAG00000030026) #22	PDE10A (ENSMFAG00000046132) #24	C6orf118 (ENSMFAG00000031329) #25	QKI (ENSMFAG00000044069) #26	ENSMFAG00000057576	PACRG (ENSMFAG00000039741) #27	PRKN (ENSMFAG00000002107) #28	AGPAT4 (ENSMFAG00000041781) #29	MAP3K4 (ENSMFAG00000036572) #30	ENSMFAG00000061670	PLG (ENSMFAG00000050264) #31	ENSMFAG00000051812 #31	ENSMFAG00000063217	ENSMFAG00000064690	SLC22A3 (ENSMFAG00000002893) #32	SLC22A2 (ENSMFAG00000031849) #33
Rhesus	MODERN SPECIES	14	FRMD1 (ENSMMUG00000020445)	KIF25 (ENSMMUG00000020444)	AFDN (ENSMMUG00000021044)	ENSMMUG00000062443	ENSMMUG00000029352	TTLL2 (ENSMMUG00000005680)	UNC93A (ENSMMUG00000008228)	GPR31 (ENSMMUG00000060558)	CCR6 (ENSMMUG00000005676) #16	CEP43 (ENSMMUG00000005674) #17	RNASET2 (ENSMMUG00000005673) #18	RPS6KA2 (ENSMMUG00000005670) #19	MPC1 (ENSMMUG00000011739) #20	SFT2D1 (ENSMMUG00000011736) #21	PRR18 (ENSMMUG00000011700)	TBXT (ENSMMUG00000017047) #22	PDE10A (ENSMMUG00000023614) #24	C4H6orf118 (ENSMMUG00000023613) #25	ENSMMUG00000055955	QKI (ENSMMUG00000000428) #26	ENSMMUG00000054834	PACRG (ENSMMUG00000020412) #27	PRKN (ENSMMUG00000020410) #28	AGPAT4 (ENSMMUG00000006147) #29	MAP3K4 (ENSMMUG00000006143) #30	ENSMMUG00000057619	PLG (ENSMMUG00000016945) #31	ENSMMUG00000016201	SLC22A3 (ENSMMUG00000005717) #32	SLC22A2 (ENSMMUG00000005715) #33	SLC22A1 (ENSMMUG00000015662) #34
Pig-tailed macaque	MODERN SPECIES	139	SMOC2 (ENSMNEG00000020280)	DACT2 (ENSMNEG00000039050)	ENSMNEG00000030291	FRMD1 (ENSMNEG00000042258)	KIF25 (ENSMNEG00000040085)	AFDN (ENSMNEG00000030609)	ENSMNEG00000035667	TTLL2 (ENSMNEG00000043374)	UNC93A (ENSMNEG00000033918)	CCR6 (ENSMNEG00000033597) #16	CEP43 (ENSMNEG00000044780) #17	RNASET2 (ENSMNEG00000033732) #18	RPS6KA2 (ENSMNEG00000028453) #19	MPC1 (ENSMNEG00000030001) #20	SFT2D1 (ENSMNEG00000034299) #21	TBXT (ENSMNEG00000040011) #22	ENSMNEG00000037990	ENSMNEG00000022920	ENSMNEG00000038868 #23	PDE10A (ENSMNEG00000027445) #24	C6orf118 (ENSMNEG00000036512) #25	ENSMNEG00000026836	ENSMNEG00000043724 #26	PACRG (ENSMNEG00000042289) #27	PRKN (ENSMNEG00000027725) #28	AGPAT4 (ENSMNEG00000037275) #29	MAP3K4 (ENSMNEG00000032311) #30	PLG (ENSMNEG00000042095) #31
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00950000182767.b.b.d.hb.a.a.a.a.b	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153095.g.b.a.a.a.b.b.b	ENSGT00940000155310.b #26	ENSGT01090000260381	ENSGT00940000157330 #27	ENSGT00390000011034.`c #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000157183.a.a.a	ENSGT00940000157183.a.a.b	ENSGT00940000160810 #32	ENSGT00940000155089 #33
Cercopithecinae_d	ANCESTRAL SPECIES	133	ENSGT00950000183181.A.a	ENSGT00950000182767.b.b.d.hb.a.a.a.a.b	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00910000148244	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00390000012628.a.a.d.d.d.a	ENSGT00940000165037	ENSGT00910000147801	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153095.g.b.a.a.a.b.b.b
Sooty mangabey	MODERN SPECIES	220															SFT2D1 (ENSCATG00000034006) #21	TBXT (ENSCATG00000038841) #22	ENSCATG00000038207	ENSCATG00000035247	PDE10A (ENSCATG00000039033) #24	ENSCATG00000040268 #23	C6orf118 (ENSCATG00000034818) #25	ENSCATG00000016910	ENSCATG00000037623 #26	ENSCATG00000038866	PACRG (ENSCATG00000036404) #27	PRKN (ENSCATG00000033190) #28	AGPAT4 (ENSCATG00000012223) #29	MAP3K4 (ENSCATG00000038027) #30	ENSCATG00000034269	PLG (ENSCATG00000039756) #31
Drill	MODERN SPECIES	1309	FRMD1 (ENSMLEG00000040855)	KIF25 (ENSMLEG00000043513)	AFDN (ENSMLEG00000026403)	ENSMLEG00000037970	ENSMLEG00000016774	ENSMLEG00000024803	TTLL2 (ENSMLEG00000028265)	UNC93A (ENSMLEG00000033154)	CCR6 (ENSMLEG00000040801) #16	CEP43 (ENSMLEG00000030168) #17	RNASET2 (ENSMLEG00000020984) #18	RPS6KA2 (ENSMLEG00000018321) #19	ENSMLEG00000024978	MPC1 (ENSMLEG00000040167) #20	SFT2D1 (ENSMLEG00000036233) #21	TBXT (ENSMLEG00000028132) #22	ENSMLEG00000035760	ENSMLEG00000039755	ENSMLEG00000032182	ENSMLEG00000004880	ENSMLEG00000035256 #23	PDE10A (ENSMLEG00000036596) #24	C6orf118 (ENSMLEG00000041650) #25	ENSMLEG00000044157	ENSMLEG00000033347 #26	ENSMLEG00000025987	PACRG (ENSMLEG00000040096) #27	PRKN (ENSMLEG00000042695) #28
Olive baboon	MODERN SPECIES	16	KIF25 (ENSPANG00000006177)	ENSPANG00000037433	AFDN (ENSPANG00000022297)	ENSPANG00000042736	ENSPANG00000008429	UNC93A (ENSPANG00000022873)	GPR31 (ENSPANG00000045312)	CCR6 (ENSPANG00000038558) #16	CEP43 (ENSPANG00000008430) #17	RNASET2 (ENSPANG00000022370) #18	ENSPANG00000041620	RPS6KA2 (ENSPANG00000018198) #19	MPC1 (ENSPANG00000030766) #20	SFT2D1 (ENSPANG00000000460) #21	PRR18 (ENSPANG00000035337)	TBXT (ENSPANG00000005068) #22	PDE10A (ENSPANG00000019045) #24	C6orf118 (ENSPANG00000010211) #25	ENSPANG00000047222	QKI (ENSPANG00000006711) #26	ENSPANG00000043294	ENSPANG00000040612	PACRG (ENSPANG00000030883) #27	ENSPANG00000048628	PRKN (ENSPANG00000022007) #28	AGPAT4 (ENSPANG00000043829) #29	ENSPANG00000050992	MAP3K4 (ENSPANG00000013261) #30	PLG (ENSPANG00000007072) #31	ENSPANG00000038033	ENSPANG00000042063
Vervet Monkey	MODERN SPECIES	4	FRMD1 (ENSCSAG00000012014)	KIF25 (ENSCSAG00000012027)	AFDN (ENSCSAG00000012040)	ENSCSAG00000012055	TTLL2 (ENSCSAG00000012063)	UNC93A (ENSCSAG00000012079)	ENSCSAG00000012101	GPR31 (ENSCSAG00000018984)	CCR6 (ENSCSAG00000012111) #16	CEP43 (ENSCSAG00000012128) #17	RNASET2 (ENSCSAG00000012144) #18	ENSCSAG00000012150	RPS6KA2 (ENSCSAG00000012167) #19	SFT2D1 (ENSCSAG00000012180) #21	PRR18 (ENSCSAG00000012184)	TBXT (ENSCSAG00000012200) #22	ENSCSAG00000012208	PDE10A (ENSCSAG00000012225) #24	C6orf118 (ENSCSAG00000012234) #25	ENSCSAG00000012244	QKI (ENSCSAG00000012257) #26	PRKN (ENSCSAG00000012267) #28	ENSCSAG00000018983	AGPAT4 (ENSCSAG00000012273) #29	MAP3K4 (ENSCSAG00000012282) #30	PLG (ENSCSAG00000012290) #31	LPA (ENSCSAG00000012297)	SLC22A3 (ENSCSAG00000012348) #32	SLC22A2 (ENSCSAG00000012370) #33	SLC22A1 (ENSCSAG00000012377) #34	IGF2R (ENSCSAG00000012403) #35
Rhinopithecus	ANCESTRAL SPECIES	403													ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31
Golden snub-nosed monkey	MODERN SPECIES	1619													ENSRROG00000027242	MPC1 (ENSRROG00000030479) #20	SFT2D1 (ENSRROG00000019794) #21	TBXT (ENSRROG00000029792) #22	ENSRROG00000039451 #23
Black snub-nosed monkey	MODERN SPECIES	295													RPS6KA2 (ENSRBIG00000018635) #19	MPC1 (ENSRBIG00000036142) #20	SFT2D1 (ENSRBIG00000036071) #21	TBXT (ENSRBIG00000037010) #22	PDE10A (ENSRBIG00000023020) #24	ENSRBIG00000036166 #23	C6orf118 (ENSRBIG00000004596) #25	QKI (ENSRBIG00000043656) #26	PACRG (ENSRBIG00000005726) #27	PRKN (ENSRBIG00000027594) #28	AGPAT4 (ENSRBIG00000031711) #29	MAP3K4 (ENSRBIG00000036975) #30	PLG (ENSRBIG00000042750) #31
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000154957.B.s.b	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000155208.o.a #31	ENSGT00940000157183.a.a	ENSGT00940000155208.p #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34
Hominidae	ANCESTRAL SPECIES	5	ENSGT00580000082081	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000154957.B.s.b	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000155208.o.a #31	ENSGT00940000157183.a.a	ENSGT00940000155208.p #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00580000082081	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a.a #18	ENSGT00940000154957.B.s.b	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000155208.o.a #31	ENSGT00940000157183.a.a	ENSGT00940000155208.p #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34
Gorilla	MODERN SPECIES	19	ENSGGOG00000037096	AFDN (ENSGGOG00000007655)	ENSGGOG00000011747	TTLL2 (ENSGGOG00000014857)	ENSGGOG00000011740	ENSGGOG00000040061	GPR31 (ENSGGOG00000007378)	CCR6 (ENSGGOG00000040098) #16	CEP43 (ENSGGOG00000024970) #17	RNASET2 (ENSGGOG00000000498) #18	ENSGGOG00000041475	RPS6KA2 (ENSGGOG00000004934) #19	ENSGGOG00000038590 #20	SFT2D1 (ENSGGOG00000024304) #21	ENSGGOG00000028089	TBXT (ENSGGOG00000007693) #22	ENSGGOG00000003914 #24	C6orf118 (ENSGGOG00000014415) #25	QKI (ENSGGOG00000000733) #26	PACRG (ENSGGOG00000014095) #27	PRKN (ENSGGOG00000041961) #28	ENSGGOG00000023810	MAP3K4 (ENSGGOG00000008360) #30	PLG (ENSGGOG00000010300) #31	LPA (ENSGGOG00000016065)	SLC22A3 (ENSGGOG00000001951) #32	SLC22A2 (ENSGGOG00000013636) #33	SLC22A1 (ENSGGOG00000001671) #34	ENSGGOG00000022414	IGF2R (ENSGGOG00000001658) #35	MAS1 (ENSGGOG00000010485) #36
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00580000082081	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a.a #18	ENSGT00940000154957.B.s.b	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000155208.o.a #31	ENSGT00940000157183.a.a	ENSGT00940000155208.p #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34
Pan	ANCESTRAL SPECIES	5	ENSGT00580000082081	ENSGT00940000155237	ENSGT00530000063927.a.a.n.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00530000063927.a.a.n.b.b.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a.a #18	ENSGT00940000154957.B.s.b	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00910000146857 #23	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00910000148333	ENSGT00880000138034 #30	ENSGT00940000155208.o.a #31	ENSGT00940000157183.a.a	ENSGT00940000155208.p #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34
Chimpanzee	MODERN SPECIES	19	ENSPTRG00000050527	AFDN (ENSPTRG00000018810)	ENSPTRG00000047620	ENSPTRG00000047252	TTLL2 (ENSPTRG00000018805)	UNC93A (ENSPTRG00000018803)	ENSPTRG00000018802	GPR31 (ENSPTRG00000018800)	CEP43 (ENSPTRG00000033965) #17	RNASET2 (ENSPTRG00000018796) #18	ENSPTRG00000047422	RPS6KA2 (ENSPTRG00000018793) #19	MPC1 (ENSPTRG00000024084) #20	SFT2D1 (ENSPTRG00000023700) #21	PRR18 (ENSPTRG00000018790)	TBXT (ENSPTRG00000018789) #22	PDE10A (ENSPTRG00000018787) #24	C6H6orf118 (ENSPTRG00000018786) #25	QKI (ENSPTRG00000018785) #26	PACRG (ENSPTRG00000048824) #27	PRKN (ENSPTRG00000018781) #28	AGPAT4 (ENSPTRG00000018779) #29	ENSPTRG00000048118	MAP3K4 (ENSPTRG00000046415) #30	PLG (ENSPTRG00000018774) #31	LPA (ENSPTRG00000018770)	SLC22A3 (ENSPTRG00000018769) #32	SLC22A2 (ENSPTRG00000018768) #33	SLC22A1 (ENSPTRG00000018767) #34	ENSPTRG00000051861	IGF2R (ENSPTRG00000018764) #35
Bonobo	MODERN SPECIES	19	AFDN (ENSPPAG00000018981)	ENSPPAG00000025522	ENSPPAG00000040260	TTLL2 (ENSPPAG00000043935)	UNC93A (ENSPPAG00000034812)	ENSPPAG00000031294	ENSPPAG00000028331	GPR31 (ENSPPAG00000013225)	CCR6 (ENSPPAG00000035908) #16	CEP43 (ENSPPAG00000039127) #17	RNASET2 (ENSPPAG00000031557) #18	ENSPPAG00000038016	RPS6KA2 (ENSPPAG00000038721) #19	ENSPPAG00000034758 #20	SFT2D1 (ENSPPAG00000001173) #21	TBXT (ENSPPAG00000030203) #22	ENSPPAG00000025444 #23	ENSPPAG00000034143 #24	C6orf118 (ENSPPAG00000032502) #25	ENSPPAG00000038059 #26	PACRG (ENSPPAG00000000755) #27	PRKN (ENSPPAG00000034661) #28	AGPAT4 (ENSPPAG00000041903) #29	ENSPPAG00000006234	MAP3K4 (ENSPPAG00000037745) #30	PLG (ENSPPAG00000042434) #31	ENSPPAG00000034032	ENSPPAG00000026664 #31	SLC22A3 (ENSPPAG00000009760) #32	SLC22A2 (ENSPPAG00000012601) #33	SLC22A1 (ENSPPAG00000017979) #34
Human	MODERN SPECIES	18	KIF25 (ENSG00000125337)	AFDN (ENSG00000130396)	TTLL2 (ENSG00000120440)	UNC93A (ENSG00000112494)	GPR31 (ENSG00000120436)	CCR6 (ENSG00000112486) #16	ENSG00000272980	CEP43 (ENSG00000213066) #17	RNASET2 (ENSG00000026297) #18	ENSG00000249141	RAMACL (ENSG00000235272)	RPS6KA2 (ENSG00000071242) #19	MPC1 (ENSG00000060762) #20	SFT2D1 (ENSG00000198818) #21	PRR18 (ENSG00000176381)	TBXT (ENSG00000164458) #22	PDE10A (ENSG00000112541) #24	C6orf118 (ENSG00000112539) #25	QKI (ENSG00000112531) #26	PACRG (ENSG00000112530) #27	PRKN (ENSG00000185345) #28	AGPAT4 (ENSG00000026652) #29	MAP3K4 (ENSG00000085511) #30	PLG (ENSG00000122194) #31	LPA (ENSG00000198670)	SLC22A3 (ENSG00000146477) #32	SLC22A2 (ENSG00000112499) #33	SLC22A1 (ENSG00000175003) #34	IGF2R (ENSG00000197081) #35	MAS1 (ENSG00000130368) #36	PNLDC1 (ENSG00000146453) #37
Orangutan	MODERN SPECIES	19	ENSPPYG00000017179	AFDN (ENSPPYG00000017176)	ENSPPYG00000017174	ENSPPYG00000017172	TTLL2 (ENSPPYG00000017171)	UNC93A (ENSPPYG00000017170)	GPR31 (ENSPPYG00000017169)	CCR6 (ENSPPYG00000017168) #16	CEP43 (ENSPPYG00000032640) #17	RNASET2 (ENSPPYG00000037542) #18	RPS6KA2 (ENSPPYG00000017167) #19	ENSPPYG00000017166 #20	ENSPPYG00000017165 #21	PRR18 (ENSPPYG00000017164)	ENSPPYG00000032308	TBXT (ENSPPYG00000017163) #22	PDE10A (ENSPPYG00000017162) #24	C6orf118 (ENSPPYG00000017161) #25	QKI (ENSPPYG00000017160) #26	ENSPPYG00000035748	PACRG (ENSPPYG00000017159) #27	PRKN (ENSPPYG00000017158) #28	AGPAT4 (ENSPPYG00000017156) #29	ENSPPYG00000038768	MAP3K4 (ENSPPYG00000017155) #30	PLG (ENSPPYG00000017153) #31	ENSPPYG00000039278	ENSPPYG00000029841 #31	SLC22A3 (ENSPPYG00000017152) #32	SLC22A2 (ENSPPYG00000017151) #33	SLC22A1 (ENSPPYG00000017150) #34
Gibbon	MODERN SPECIES	18	ENSNLEG00000033655	FRMD1 (ENSNLEG00000000364)	KIF25 (ENSNLEG00000000354)	AFDN (ENSNLEG00000000333)	ENSNLEG00000033899	TTLL2 (ENSNLEG00000031278)	UNC93A (ENSNLEG00000011647)	ENSNLEG00000011641	CCR6 (ENSNLEG00000032795) #16	CEP43 (ENSNLEG00000011605) #17	RNASET2 (ENSNLEG00000027795) #18	ENSNLEG00000034042	RPS6KA2 (ENSNLEG00000011560) #19	ENSNLEG00000032002 #20	SFT2D1 (ENSNLEG00000031636) #21	TBXT (ENSNLEG00000011552) #22	ENSNLEG00000033543 #23	ENSNLEG00000011508 #24	C6orf118 (ENSNLEG00000011493) #25	ENSNLEG00000011478 #26	PACRG (ENSNLEG00000011474) #27	PRKN (ENSNLEG00000011473) #28	ENSNLEG00000011464 #29	MAP3K4 (ENSNLEG00000011428) #30	ENSNLEG00000011380 #31	ENSNLEG00000011373 #32	SLC22A2 (ENSNLEG00000011367) #33	ENSNLEG00000035654 #34	ENSNLEG00000035869	IGF2R (ENSNLEG00000011313) #35	PNLDC1 (ENSNLEG00000011282) #37
Tarsier	MODERN SPECIES	4338													RPS6KA2 (ENSTSYG00000001179) #19	MPC1 (ENSTSYG00000006173) #20	SFT2D1 (ENSTSYG00000028861) #21	TBXT (ENSTSYG00000012076) #22
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00390000012017	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Lemuriformes_a	ANCESTRAL SPECIES	210			ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22
Coquerels sifaka	MODERN SPECIES	763								UNC93A (ENSPCOG00000014524)	TTLL2 (ENSPCOG00000020258)	CEP43 (ENSPCOG00000018903) #17	RNASET2 (ENSPCOG00000019496) #18	RPS6KA2 (ENSPCOG00000020638) #19	MPC1 (ENSPCOG00000019319) #20	SFT2D1 (ENSPCOG00000023025) #21	PRR18 (ENSPCOG00000016779)	TBXT (ENSPCOG00000006781) #22
Greater bamboo lemur	MODERN SPECIES	817			SMOC2 (ENSPSMG00000025182)	DACT2 (ENSPSMG00000025188)	ENSPSMG00000025200	AFDN (ENSPSMG00000025355)	UNC93A (ENSPSMG00000025376)	CCR6 (ENSPSMG00000025379) #16	CEP43 (ENSPSMG00000025401) #17	ENSPSMG00000025419	RNASET2 (ENSPSMG00000025420) #18	RPS6KA2 (ENSPSMG00000025541) #19	MPC1 (ENSPSMG00000025556) #20	SFT2D1 (ENSPSMG00000025558) #21	PRR18 (ENSPSMG00000025559)	TBXT (ENSPSMG00000025564) #22
Mouse lemur	MODERN SPECIES	28	WDR27 (ENSMICG00000013170)	THBS2 (ENSMICG00000009323)	SMOC2 (ENSMICG00000000590)	DACT2 (ENSMICG00000033819)	KIF25 (ENSMICG00000044733)	AFDN (ENSMICG00000003571)	UNC93A (ENSMICG00000004803)	TTLL2 (ENSMICG00000047984)	CCR6 (ENSMICG00000028385) #16	CEP43 (ENSMICG00000014198) #17	RNASET2 (ENSMICG00000014184) #18	RPS6KA2 (ENSMICG00000003856) #19	MPC1 (ENSMICG00000003851) #20	SFT2D1 (ENSMICG00000034411) #21	PRR18 (ENSMICG00000042137)	TBXT (ENSMICG00000016122) #22	PDE10A (ENSMICG00000008121) #24	C6orf118 (ENSMICG00000046277) #25	QKI (ENSMICG00000009220) #26	PACRG (ENSMICG00000009209) #27	PRKN (ENSMICG00000009200) #28	AGPAT4 (ENSMICG00000009184) #29	MAP3K4 (ENSMICG00000007663) #30	ENSMICG00000034395 #31	SLC22A3 (ENSMICG00000007647) #32	SLC22A2 (ENSMICG00000007636) #33	SLC22A1 (ENSMICG00000007625) #34	IGF2R (ENSMICG00000007582) #35	PNLDC1 (ENSMICG00000008021) #37	MRPL18 (ENSMICG00000044845)	ENSMICG00000007998
Bushbaby	MODERN SPECIES	171	THBS2 (ENSOGAG00000015677)	SMOC2 (ENSOGAG00000009845)	DACT2 (ENSOGAG00000005520)	KIF25 (ENSOGAG00000001753)	AFDN (ENSOGAG00000003132)	UNC93A (ENSOGAG00000027493)	TTLL2 (ENSOGAG00000033615)	ENSOGAG00000033331	CCR6 (ENSOGAG00000025164) #16	CEP43 (ENSOGAG00000006310) #17	RNASET2 (ENSOGAG00000006308) #18	ENSOGAG00000033842	RPS6KA2 (ENSOGAG00000006306) #19	SFT2D1 (ENSOGAG00000006302) #21	PRR18 (ENSOGAG00000030765)	TBXT (ENSOGAG00000007863) #22	PDE10A (ENSOGAG00000007629) #24	C6orf118 (ENSOGAG00000007625) #25	QKI (ENSOGAG00000003634) #26	PACRG (ENSOGAG00000004947) #27	PRKN (ENSOGAG00000010979) #28	AGPAT4 (ENSOGAG00000004567) #29	MAP3K4 (ENSOGAG00000004556) #30	ENSOGAG00000030352 #31	SLC22A3 (ENSOGAG00000004550) #32	SLC22A2 (ENSOGAG00000005281) #33	ENSOGAG00000005280	SLC22A1 (ENSOGAG00000005276) #34	IGF2R (ENSOGAG00000005270) #35	MAS1 (ENSOGAG00000005268) #36	ENSOGAG00000031154
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Glires	ANCESTRAL SPECIES	5	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Lagomorpha	ANCESTRAL SPECIES	64															ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394	ENSGT00550000074878
Rabbit	MODERN SPECIES	3																TBXT (ENSOCUG00000000660) #22	PDE10A (ENSOCUG00000009218) #24	ENSOCUG00000016006	ENSOCUG00000034613	ENSOCUG00000030844	QKI (ENSOCUG00000004117) #26	PACRG (ENSOCUG00000013289) #27	ENSOCUG00000031144	ENSOCUG00000025750 #28	ENSOCUG00000035966 #28	ENSOCUG00000033664 #29	ENSOCUG00000032142	MAP3K4 (ENSOCUG00000017154) #30	ENSOCUG00000001766 #31	SLC22A3 (ENSOCUG00000004222) #32	SLC22A2 (ENSOCUG00000002542) #33
Pika	MODERN SPECIES	2882															SFT2D1 (ENSOPRG00000003408) #21	ENSOPRG00000003376 #22
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00950000183181.A.a	ENSGT00940000162752	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Marmotini	ANCESTRAL SPECIES	11	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00390000015545.v	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063359.A	ENSGT00940000155237	ENSGT00940000162166	ENSGT00940000162787	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00390000015545.v	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Arctic ground squirrel	MODERN SPECIES	116														SFT2D1 (ENSUPAG00010012170) #21	PRR18 (ENSUPAG00010012167)	TBXT (ENSUPAG00010012160) #22	PDE10A (ENSUPAG00010011970) #24	ENSUPAG00010011964 #25	QKI (ENSUPAG00010011918) #26	PACRG (ENSUPAG00010011904) #27	ENSUPAG00010011891	PRKN (ENSUPAG00010011852) #28	AGPAT4 (ENSUPAG00010011837) #29	ENSUPAG00010011827	MAP3K4 (ENSUPAG00010011747) #30	ENSUPAG00010011719 #31	SLC22A3 (ENSUPAG00010011704) #32	SLC22A2 (ENSUPAG00010011687) #33	SLC22A1 (ENSUPAG00010011671) #34	IGF2R (ENSUPAG00010011620) #35
Squirrel	MODERN SPECIES	89	THBS2 (ENSSTOG00000028868)	SMOC2 (ENSSTOG00000011824)	DACT2 (ENSSTOG00000028857)	AFDN (ENSSTOG00000014943)	KIF25 (ENSSTOG00000027308)	FRMD1 (ENSSTOG00000019365)	ENSSTOG00000002281	ENSSTOG00000025800	GPR31 (ENSSTOG00000002401)	CCR6 (ENSSTOG00000022381) #16	CEP43 (ENSSTOG00000028679) #17	RNASET2 (ENSSTOG00000010853) #18	RPS6KA2 (ENSSTOG00000005318) #19	MPC1 (ENSSTOG00000024720) #20	SFT2D1 (ENSSTOG00000031211) #21	TBXT (ENSSTOG00000028238) #22	PDE10A (ENSSTOG00000001947) #24	C6orf118 (ENSSTOG00000020468) #25	QKI (ENSSTOG00000009113) #26	PACRG (ENSSTOG00000010375) #27	ENSSTOG00000034364	PRKN (ENSSTOG00000021965) #28	AGPAT4 (ENSSTOG00000002544) #29	MAP3K4 (ENSSTOG00000002821) #30	ENSSTOG00000020315 #31	SLC22A3 (ENSSTOG00000007036) #32	SLC22A2 (ENSSTOG00000010147) #33	SLC22A1 (ENSSTOG00000009024) #34	IGF2R (ENSSTOG00000008960) #35	MAS1 (ENSSTOG00000029761) #36	ENSSTOG00000026373 #36
Alpin marmot	MODERN SPECIES	55	THBS2 (ENSMMMG00000008020)	ENSMMMG00000008062	SMOC2 (ENSMMMG00000008070)	DACT2 (ENSMMMG00000008118)	UNC93A (ENSMMMG00000008150)	AFDN (ENSMMMG00000008187)	KIF25 (ENSMMMG00000008818)	FRMD1 (ENSMMMG00000008833)	ENSMMMG00000008905	CCR6 (ENSMMMG00000008925) #16	ENSMMMG00000008953 #17	RNASET2 (ENSMMMG00000008966) #18	RPS6KA2 (ENSMMMG00000008982) #19	MPC1 (ENSMMMG00000009012) #20	ENSMMMG00000009041	TBXT (ENSMMMG00000009058) #22	PDE10A (ENSMMMG00000009083) #24	ENSMMMG00000009166 #25	QKI (ENSMMMG00000009192) #26	PACRG (ENSMMMG00000009213) #27	PRKN (ENSMMMG00000009240) #28	ENSMMMG00000009285	AGPAT4 (ENSMMMG00000009306) #29	MAP3K4 (ENSMMMG00000009318) #30	ENSMMMG00000009428 #31	SLC22A3 (ENSMMMG00000009457) #32	SLC22A2 (ENSMMMG00000009474) #33	SLC22A1 (ENSMMMG00000009498) #34	IGF2R (ENSMMMG00000009520) #35	MAS1 (ENSMMMG00000009593) #36	ENSMMMG00000009610 #36
Eurasian red squirrel	MODERN SPECIES	16	AFDN (ENSSVLG00005008595)	ENSSVLG00005008872	UNC93A (ENSSVLG00005008938)	TTLL2 (ENSSVLG00005009051)	ENSSVLG00005009071	CCR6 (ENSSVLG00005009206) #16	CEP43 (ENSSVLG00005009283) #17	RNASET2 (ENSSVLG00005009530) #18	RPS6KA2 (ENSSVLG00005009658) #19	ENSSVLG00005009894	ENSSVLG00005009919	ENSSVLG00005009943	MPC1 (ENSSVLG00005009984) #20	SFT2D1 (ENSSVLG00005010090) #21	PRR18 (ENSSVLG00005010120)	TBXT (ENSSVLG00005010149) #22	ENSSVLG00005010236	PDE10A (ENSSVLG00005010372) #24	C6orf118 (ENSSVLG00005010851) #25	QKI (ENSSVLG00005011023) #26	PACRG (ENSSVLG00005011174) #27	PRKN (ENSSVLG00005011292) #28	AGPAT4 (ENSSVLG00005011803) #29	MAP3K4 (ENSSVLG00005011972) #30	ENSSVLG00005013042 #31	ENSSVLG00005013165 #31	ENSSVLG00005013240 #31	SLC22A3 (ENSSVLG00005013302) #32	SLC22A2 (ENSSVLG00005013453) #33	SLC22A1 (ENSSVLG00005013724) #34	IGF2R (ENSSVLG00005013999) #35
Hystricomorpha	ANCESTRAL SPECIES	53	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000002386	ENSHGLG00000004839	ENSHGLG00000033385	ENSHGLG00000002718	ENSHGLG00000002951	CCR6 (ENSHGLG00000050244) #16	ENSHGLG00000003848 #17	ENSHGLG00000002675 #18	RPS6KA2 (ENSHGLG00000003392) #19	MPC1 (ENSHGLG00000034371) #20	SFT2D1 (ENSHGLG00000002919) #21	ENSHGLG00000049190	ENSHGLG00000032835	ENSHGLG00000040761	ENSHGLG00000041990	TBXT (ENSHGLG00000002638) #22	PDE10A (ENSHGLG00000003609) #24	C6orf118 (ENSHGLG00000040311) #25	ENSHGLG00000002800	ENSHGLG00000033943	ENSHGLG00000020018	QKI (ENSHGLG00000003074) #26	ENSHGLG00000040590	PACRG (ENSHGLG00000048524) #27	ENSHGLG00000041594	ENSHGLG00000050950 #28	PRKN (ENSHGLG00000006873) #28	ENSHGLG00000034284	AGPAT4 (ENSHGLG00000008163) #29	MAP3K4 (ENSHGLG00000011068) #30	ENSHGLG00000017452 #31
Hystricomorpha_a	ANCESTRAL SPECIES	30	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Guinea pig	MODERN SPECIES	60	SAMD5 (ENSCPOG00000036984)	STXBP5 (ENSCPOG00000013005)	ENSCPOG00000002354	ENSCPOG00000002358	AFDN (ENSCPOG00000008268)	UNC93A (ENSCPOG00000031556)	ENSCPOG00000009004	GPR31 (ENSCPOG00000001786)	CCR6 (ENSCPOG00000034828) #16	CEP43 (ENSCPOG00000036620) #17	RNASET2 (ENSCPOG00000007899) #18	RPS6KA2 (ENSCPOG00000005210) #19	MPC1 (ENSCPOG00000005208) #20	SFT2D1 (ENSCPOG00000031625) #21	ENSCPOG00000000167	TBXT (ENSCPOG00000001358) #22	PDE10A (ENSCPOG00000008783) #24	C6orf118 (ENSCPOG00000008774) #25	QKI (ENSCPOG00000003424) #26	PACRG (ENSCPOG00000013410) #27	PRKN (ENSCPOG00000006136) #28	AGPAT4 (ENSCPOG00000006135) #29	MAP3K4 (ENSCPOG00000013392) #30	ENSCPOG00000011605 #31	SLC22A3 (ENSCPOG00000010127) #32	SLC22A2 (ENSCPOG00000001527) #33	IGF2R (ENSCPOG00000013207) #35	MAS1 (ENSCPOG00000000027) #36	PNLDC1 (ENSCPOG00000019565) #37	MRPL18 (ENSCPOG00000040103)	TCP1 (ENSCPOG00000001676)
Hystricomorpha_b	ANCESTRAL SPECIES	29	ENSGT00940000158473.b	ENSGT00530000063408.A	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Degu	MODERN SPECIES	302								AFDN (ENSODEG00000001381)	UNC93A (ENSODEG00000001133)	CEP43 (ENSODEG00000000977) #17	RNASET2 (ENSODEG00000002506) #18	RPS6KA2 (ENSODEG00000002466) #19	ENSODEG00000002397 #20	ENSODEG00000018858	SFT2D1 (ENSODEG00000002355) #21	ENSODEG00000002340 #22	ENSODEG00000002320	ENSODEG00000018790	PDE10A (ENSODEG00000001220) #24	C6orf118 (ENSODEG00000001191) #25
Long-tailed chinchilla	MODERN SPECIES	146	ZC3H12D (ENSCLAG00000002831)	TAB2 (ENSCLAG00000002977)	UST (ENSCLAG00000003051)	SASH1 (ENSCLAG00000003367)	STXBP5 (ENSCLAG00000004159)	ADGB (ENSCLAG00000004642)	AFDN (ENSCLAG00000003013)	UNC93A (ENSCLAG00000004396)	ENSCLAG00000004820	CCR6 (ENSCLAG00000005134) #16	CEP43 (ENSCLAG00000005200) #17	RNASET2 (ENSCLAG00000005811) #18	RPS6KA2 (ENSCLAG00000002285) #19	MPC1 (ENSCLAG00000002442) #20	SFT2D1 (ENSCLAG00000002586) #21	TBXT (ENSCLAG00000002632) #22	PDE10A (ENSCLAG00000004872) #24	C6orf118 (ENSCLAG00000006108) #25	ENSCLAG00000006238 #26	PACRG (ENSCLAG00000008105) #27	PRKN (ENSCLAG00000008284) #28	AGPAT4 (ENSCLAG00000008421) #29	MAP3K4 (ENSCLAG00000008769) #30	ENSCLAG00000002399 #31	SLC22A3 (ENSCLAG00000002492) #32	SLC22A2 (ENSCLAG00000002562) #33	SLC22A1 (ENSCLAG00000002646) #34	IGF2R (ENSCLAG00000002642) #35	MAS1 (ENSCLAG00000017515) #36	PNLDC1 (ENSCLAG00000003228) #37	MRPL18 (ENSCLAG00000012045)
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Kangaroo rat	MODERN SPECIES	396		ENSDORG00000014082	ENSDORG00000014079	Phf10 (ENSDORG00000013350)	Wdr27 (ENSDORG00000010049)	Thbs2 (ENSDORG00000005713)	Smoc2 (ENSDORG00000006153)	ENSDORG00000003713	Afdn (ENSDORG00000010887)	ENSDORG00000012694	Ccr6 (ENSDORG00000012594) #16	Cep43 (ENSDORG00000004815) #17	ENSDORG00000011636 #18	Rps6ka2 (ENSDORG00000007779) #19	ENSDORG00000010309 #21	ENSDORG00000012736 #22	Pde10a (ENSDORG00000005783) #24	Qki (ENSDORG00000008151) #26	ENSDORG00000026934 #27	ENSDORG00000027142 #28	Agpat4 (ENSDORG00000015627) #29	ENSDORG00000025664 #30	Plg (ENSDORG00000024248) #31	Slc22a3 (ENSDORG00000008402) #32	Slc22a2 (ENSDORG00000008400) #33	Slc22a1 (ENSDORG00000011523) #34	Igf2r (ENSDORG00000009527) #35	Mas1 (ENSDORG00000003320) #36	Pnldc1 (ENSDORG00000011517) #37	ENSDORG00000011510	ENSDORG00000011505
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Lesser Egyptian jerboa	MODERN SPECIES	44	1600012H06Rik (ENSJJAG00000009779)	Wdr27 (ENSJJAG00000018913)	Thbs2 (ENSJJAG00000005730)	ENSJJAG00000022960	Smoc2 (ENSJJAG00000009559)	Dact2 (ENSJJAG00000006451)	ENSJJAG00000015043	ENSJJAG00000011658	Afdn (ENSJJAG00000011148)	ENSJJAG00000020398	Cep43 (ENSJJAG00000024342) #17	ENSJJAG00000013485 #18	Rps6ka2 (ENSJJAG00000005765) #19	ENSJJAG00000020707 #20	ENSJJAG00000023581 #21	ENSJJAG00000022568 #22	Pde10a (ENSJJAG00000010428) #24	ENSJJAG00000005686 #25	ENSJJAG00000010987	ENSJJAG00000017023	Pabpc6 (ENSJJAG00000019230)	Qki (ENSJJAG00000022765) #26	Pacrg (ENSJJAG00000013819) #27	ENSJJAG00000022340	Prkn (ENSJJAG00000011282) #28	Agpat4 (ENSJJAG00000024380) #29	ENSJJAG00000017984 #30	ENSJJAG00000016960 #30	Plg (ENSJJAG00000023805) #31	Slc22a3 (ENSJJAG00000015842) #32	Slc22a2 (ENSJJAG00000020676) #33
Muroidea	ANCESTRAL SPECIES	22	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00400000024673	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956 #19	ENSGT00400000024673	ENSGT00640000091563.a #18	ENSGT00390000007441 #17	ENSGT01030000234667.b #16	ENSGT00510000046988.r #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00940000162166	ENSGT00940000155237.d	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956 #19	ENSGT00400000024673	ENSGT00640000091563.a #18	ENSGT00390000007441 #17	ENSGT01030000234667.b #16	ENSGT00510000046988.r #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000160886.p.a.b.a.a	ENSGT00940000162166	ENSGT00940000155237.d	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956 #19	ENSGT00400000024673	ENSGT00640000091563.a #18	ENSGT00390000007441 #17	ENSGT01030000234667.b #16	ENSGT00510000046988.r #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	1	Smoc2 (ENSCGRG00001000600)	Dact2 (ENSCGRG00001007356)	ENSCGRG00001010553	ENSCGRG00001010432	Afdn (ENSCGRG00001013153)	ENSCGRG00001007918	ENSCGRG00001024904	Ttll2 (ENSCGRG00001024844)	ENSCGRG00001000721	Gpr31b (ENSCGRG00001006182)	ENSCGRG00001024787	Rps6ka2 (ENSCGRG00001024721) #19	ENSCGRG00001024749 #18	ENSCGRG00001024881 #20	ENSCGRG00001024817 #21	ENSCGRG00001024700 #22	Pde10a (ENSCGRG00001016395) #24	1700010I14Rik (ENSCGRG00001014965) #25	Pabpc6 (ENSCGRG00001007983)	Qki (ENSCGRG00001012114) #26	Pacrg (ENSCGRG00001010865) #27	ENSCGRG00001009195	Prkn (ENSCGRG00001011980) #28	Agpat4 (ENSCGRG00001024340) #29	Map3k4 (ENSCGRG00001023770) #30	Plg (ENSCGRG00001023181) #31	ENSCGRG00001022809	Slc22a3 (ENSCGRG00001024404) #32	Slc22a2 (ENSCGRG00001023859) #33	Slc22a1 (ENSCGRG00001023484) #34	Igf2r (ENSCGRG00001022921) #35
Chinese hamster chok1gshd	MODERN SPECIES	317	Commd3 (ENSCGRG00001017290)	Bmi1 (ENSCGRG00001001400)	Spag6 (ENSCGRG00001015624)	Pip4k2a (ENSCGRG00001007191)	Armc3 (ENSCGRG00001020234)	Msrb2 (ENSCGRG00001021607)	Ptf1a (ENSCGRG00001018977)	4921504E06Rik (ENSCGRG00001011440)	ENSCGRG00001010382	Otud1 (ENSCGRG00001005968)	Etl4 (ENSCGRG00001017877)	Arhgap21 (ENSCGRG00001016768)	ENSCGRG00001021203	Enkur (ENSCGRG00001019789)	Thnsl1 (ENSCGRG00001002158)	ENSCGRG00001000506 #22	Gpr158 (ENSCGRG00001020901)	ENSCGRG00001008346	Myo3a (ENSCGRG00001010156)	Gad2 (ENSCGRG00001016806)	Apbb1ip (ENSCGRG00001024669)	ENSCGRG00001021110	Pdss1 (ENSCGRG00001001187)	Abi1 (ENSCGRG00001015687)	Acbd5 (ENSCGRG00001015527)	Mastl (ENSCGRG00001012625)	Yme1l1 (ENSCGRG00001024397)	Potegl (ENSCGRG00001019810)	Crem (ENSCGRG00001013907)	Cul2 (ENSCGRG00001010730)	Bambi (ENSCGRG00001004379)
Golden Hamster	MODERN SPECIES	759	1600012H06Rik (ENSMAUG00000010894)	Wdr27 (ENSMAUG00000010557)	Thbs2 (ENSMAUG00000011839)	Smoc2 (ENSMAUG00000009780)	Dact2 (ENSMAUG00000011468)	Afdn (ENSMAUG00000012864)	ENSMAUG00000020571	Rps6ka2 (ENSMAUG00000002007) #19	ENSMAUG00000000942	ENSMAUG00000000335 #18	Cep43 (ENSMAUG00000020602) #17	Ccr6 (ENSMAUG00000011050) #16	ENSMAUG00000006423 #20	ENSMAUG00000008523 #21	Prr18 (ENSMAUG00000001676)	T (ENSMAUG00000000951) #22	Pde10a (ENSMAUG00000000760) #24	1700010I14Rik (ENSMAUG00000015515) #25
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00950000183181.A.a	ENSGT00940000160886.p.a.b.a.a	ENSGT00940000162166	ENSGT00940000155237.d	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956 #19	ENSGT00640000091563.a #18	ENSGT01030000234667.b #16	ENSGT00510000046988.r #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Prairie vole	MODERN SPECIES	358	Wdr27 (ENSMOCG00000001650)	Thbs2 (ENSMOCG00000020846)	Smoc2 (ENSMOCG00000007672)	Dact2 (ENSMOCG00000011813)	Afdn (ENSMOCG00000017063)	ENSMOCG00000011368	ENSMOCG00000016335	ENSMOCG00000019493	Rps6ka2 (ENSMOCG00000011166) #19	ENSMOCG00000016647 #18	ENSMOCG00000014231	Ccr6 (ENSMOCG00000022621) #16	ENSMOCG00000003155 #20	ENSMOCG00000012383 #21	Prr18 (ENSMOCG00000014100)	T (ENSMOCG00000016940) #22	Pde10a (ENSMOCG00000016596) #24	1700010I14Rik (ENSMOCG00000011216) #25	Qki (ENSMOCG00000008370) #26	Pacrg (ENSMOCG00000018703) #27	Prkn (ENSMOCG00000000910) #28	Agpat4 (ENSMOCG00000002544) #29	Map3k4 (ENSMOCG00000015705) #30	ENSMOCG00000016399	Plg (ENSMOCG00000021058) #31	Slc22a3 (ENSMOCG00000009699) #32	Slc22a2 (ENSMOCG00000000432) #33	Slc22a1 (ENSMOCG00000006138) #34	Igf2r (ENSMOCG00000016653) #35	Mas1 (ENSMOCG00000012154) #36	Pnldc1 (ENSMOCG00000014287) #37
Northern American deer mouse	MODERN SPECIES	7	Smoc2 (ENSPEMG00000018849)	Dact2 (ENSPEMG00000006283)	ENSPEMG00000031076	ENSPEMG00000025001	Afdn (ENSPEMG00000009605)	ENSPEMG00000017052	Ttll2 (ENSPEMG00000012262)	ENSPEMG00000006421	Gpr31b (ENSPEMG00000029005)	Rps6ka2 (ENSPEMG00000008858) #19	ENSPEMG00000011035 #18	ENSPEMG00000018400 #20	ENSPEMG00000017376 #21	Prr18 (ENSPEMG00000014412)	ENSPEMG00000027563	T (ENSPEMG00000015655) #22	Pde10a (ENSPEMG00000013375) #24	1700010I14Rik (ENSPEMG00000009028) #25	Pabpc6 (ENSPEMG00000028235)	Qki (ENSPEMG00000007765) #26	Pacrg (ENSPEMG00000008420) #27	ENSPEMG00000025332	ENSPEMG00000028613	Prkn (ENSPEMG00000013734) #28	Agpat4 (ENSPEMG00000000276) #29	ENSPEMG00000007201	Map3k4 (ENSPEMG00000011456) #30	Plg (ENSPEMG00000006099) #31	Slc22a3 (ENSPEMG00000001370) #32	Slc22a2 (ENSPEMG00000009409) #33	Slc22a1 (ENSPEMG00000013645) #34
Murinae	ANCESTRAL SPECIES	29	ENSGT00950000183181.A.a	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956 #19	ENSGT00400000024673	ENSGT00640000091563.a #18	ENSGT00390000007441 #17	ENSGT01030000234667.b #16	ENSGT00510000046988.q.b #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Mus	ANCESTRAL SPECIES	21	ENSGT00940000155237	ENSGT00970000194611	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956 #19	ENSGT00400000024673	ENSGT00640000091563.a #18	ENSGT00390000007441 #17	ENSGT01030000234667.b #16	ENSGT00510000046988.q.b #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Mus_A	ANCESTRAL SPECIES	10	ENSGT00970000194611	ENSGT00940000160886.p.a.b.b.b	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956 #19	ENSGT00400000024673	ENSGT00640000091563.a #18	ENSGT00390000007441 #17	ENSGT01030000234667.b #16	ENSGT00510000046988.q.b #20	ENSGT00390000018525.a.a.j #21	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000160886.p.a.b.b.b.f	ENSGT00940000160886.p.a.b.b.b.e.b	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956 #19	ENSGT00400000024673	ENSGT00640000091563.a #18	ENSGT00390000007441 #17	ENSGT01030000234667.b #16	ENSGT00510000046988.q.b.b.a #20	ENSGT00390000018525.a.a.j #21	ENSGT00390000002164	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000154721.db.a	ENSGT00700000105447.b.a	ENSGT00940000153773.a.a.b.e.b	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065.d #34
Mouse	MODERN SPECIES	8	Rps6ka2 (ENSMUSG00000023809) #19	Tcp10a (ENSMUSG00000071322)	Ttll2 (ENSMUSG00000079722)	Gm49630 (ENSMUSG00000116672)	Unc93a2 (ENSMUSG00000056133)	Fndc1 (ENSMUSG00000071984)	Tagap (ENSMUSG00000033450)	Rsph3a (ENSMUSG00000073471)	Rnaset2a (ENSMUSG00000095687) #18	Cep43 (ENSMUSG00000069135) #17	Ccr6 (ENSMUSG00000040899) #16	Mpc1 (ENSMUSG00000023861) #20	Sft2d1 (ENSMUSG00000073468) #21	Prr18 (ENSMUSG00000055945)	T2 (ENSMUSG00000058159)	T (ENSMUSG00000062327) #22	Pde10a (ENSMUSG00000023868) #24	1700010I14Rik (ENSMUSG00000023873) #25	Gm17728 (ENSMUSG00000072968)	Pabpc6 (ENSMUSG00000046173)	Qki (ENSMUSG00000062078) #26	Pacrg (ENSMUSG00000037196) #27	Prkn (ENSMUSG00000023826) #28	Agpat4 (ENSMUSG00000023827) #29	Map3k4 (ENSMUSG00000014426) #30	Plg (ENSMUSG00000059481) #31	Slc22a3 (ENSMUSG00000023828) #32	Slc22a2 (ENSMUSG00000040966) #33	Slc22a1 (ENSMUSG00000023829) #34	Igf2r (ENSMUSG00000023830) #35	Mas1 (ENSMUSG00000068037) #36
Mus_C	ANCESTRAL SPECIES	34	ENSGT00940000157993.i	ENSGT00940000157993.j	ENSGT00530000063558.B	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000159956 #19	ENSGT00400000024673	ENSGT00640000091563.a #18	ENSGT00390000007441 #17	ENSGT01030000234667.b #16	ENSGT00510000046988.q.b.a #20	ENSGT00510000046988.q.b.b.a #20	ENSGT00390000018525.a.a.j #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00960000191666
Steppe mouse	MODERN SPECIES	2543									Ccr6 (ENSMSIG00000026019) #16	ENSMSIG00000026036	ENSMSIG00000026047 #20	Sft2d1 (ENSMSIG00000026097) #21	Prr18 (ENSMSIG00000026109)	ENSMSIG00000026117	T2 (ENSMSIG00000026128)	T (ENSMSIG00000026153) #22	ENSMSIG00000026177
spretus	MODERN SPECIES	8	Ttll2 (MGP_SPRETEiJ_G0021943)	MGP_SPRETEiJ_G0021944	MGP_SPRETEiJ_G0021945	Gpr31b (MGP_SPRETEiJ_G0021946)	Rps6ka2 (MGP_SPRETEiJ_G0021947) #19	MGP_SPRETEiJ_G0021948	MGP_SPRETEiJ_G0021949	MGP_SPRETEiJ_G0021950 #18	MGP_SPRETEiJ_G0021951 #18	Cep43 (MGP_SPRETEiJ_G0021952) #17	Ccr6 (MGP_SPRETEiJ_G0021953) #16	MGP_SPRETEiJ_G0021954 #20	Sft2d1 (MGP_SPRETEiJ_G0021955) #21	MGP_SPRETEiJ_G0021956 #21	Prr18 (MGP_SPRETEiJ_G0021957)	T (MGP_SPRETEiJ_G0021958) #22	MGP_SPRETEiJ_G0021959	MGP_SPRETEiJ_G0021960	Gm17728 (MGP_SPRETEiJ_G0021961)	Pabpc6 (MGP_SPRETEiJ_G0021962)	Qki (MGP_SPRETEiJ_G0021963) #26	Pacrg (MGP_SPRETEiJ_G0021964) #27	Prkn (MGP_SPRETEiJ_G0021965) #28	Agpat4 (MGP_SPRETEiJ_G0021966) #29	Map3k4 (MGP_SPRETEiJ_G0021967) #30	Plg (MGP_SPRETEiJ_G0021968) #31	Slc22a3 (MGP_SPRETEiJ_G0021969) #32	Slc22a2 (MGP_SPRETEiJ_G0021970) #33	Slc22a1 (MGP_SPRETEiJ_G0021971) #34	Igf2r (MGP_SPRETEiJ_G0021972) #35	Mas1 (MGP_SPRETEiJ_G0021973) #36
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021076	Ttll2 (MGP_CAROLIEiJ_G0021075)	MGP_CAROLIEiJ_G0021074	MGP_CAROLIEiJ_G0021073	MGP_CAROLIEiJ_G0021072	Gpr31b (MGP_CAROLIEiJ_G0021071)	Rps6ka2 (MGP_CAROLIEiJ_G0021070) #19	MGP_CAROLIEiJ_G0021069 #18	MGP_CAROLIEiJ_G0021068 #18	Cep43 (MGP_CAROLIEiJ_G0021067) #17	Ccr6 (MGP_CAROLIEiJ_G0021066) #16	MGP_CAROLIEiJ_G0021065 #20	MGP_CAROLIEiJ_G0021064 #21	Prr18 (MGP_CAROLIEiJ_G0021063)	Sft2d1 (MGP_CAROLIEiJ_G0021062) #21	T (MGP_CAROLIEiJ_G0021061) #22	Pde10a (MGP_CAROLIEiJ_G0021060) #24	1700010I14Rik (MGP_CAROLIEiJ_G0021059) #25	Pabpc6 (MGP_CAROLIEiJ_G0021058)	Qki (MGP_CAROLIEiJ_G0021057) #26	Pacrg (MGP_CAROLIEiJ_G0021056) #27	Prkn (MGP_CAROLIEiJ_G0021055) #28	Agpat4 (MGP_CAROLIEiJ_G0021054) #29	Map3k4 (MGP_CAROLIEiJ_G0021053) #30	Plg (MGP_CAROLIEiJ_G0021052) #31	Slc22a3 (MGP_CAROLIEiJ_G0021051) #32	Slc22a2 (MGP_CAROLIEiJ_G0021050) #33	Slc22a1 (MGP_CAROLIEiJ_G0021049) #34	MGP_CAROLIEiJ_G0021048	Mas1 (MGP_CAROLIEiJ_G0021047) #36	Mrgprh (MGP_CAROLIEiJ_G0021046) #36
Shrew mouse	MODERN SPECIES	13	MGP_PahariEiJ_G0023393	MGP_PahariEiJ_G0023392	MGP_PahariEiJ_G0023391	Gpr31b (MGP_PahariEiJ_G0023390)	Rps6ka2 (MGP_PahariEiJ_G0023389) #19	MGP_PahariEiJ_G0023388	MGP_PahariEiJ_G0023387	MGP_PahariEiJ_G0023386 #18	MGP_PahariEiJ_G0023385 #18	Cep43 (MGP_PahariEiJ_G0023384) #17	Ccr6 (MGP_PahariEiJ_G0023383) #16	MGP_PahariEiJ_G0023382 #20	MGP_PahariEiJ_G0023381 #21	Prr18 (MGP_PahariEiJ_G0023380)	MGP_PahariEiJ_G0023379 #21	T (MGP_PahariEiJ_G0023378) #22	MGP_PahariEiJ_G0023377	Pde10a (MGP_PahariEiJ_G0023376) #24	MGP_PahariEiJ_G0023375 #25	MGP_PahariEiJ_G0023374	Qki (MGP_PahariEiJ_G0023373) #26	Pacrg (MGP_PahariEiJ_G0023372) #27	Prkn (MGP_PahariEiJ_G0023371) #28	Agpat4 (MGP_PahariEiJ_G0023370) #29	Map3k4 (MGP_PahariEiJ_G0023369) #30	Plg (MGP_PahariEiJ_G0023368) #31	Slc22a3 (MGP_PahariEiJ_G0023367) #32	Slc22a2 (MGP_PahariEiJ_G0023366) #33	Slc22a1 (MGP_PahariEiJ_G0023365) #34	Igf2r (MGP_PahariEiJ_G0023364) #35	Mas1 (MGP_PahariEiJ_G0023363) #36
Rat	MODERN SPECIES		Smok2a (ENSRNOG00000052093)	LOC102546375 (ENSRNOG00000063775)	RGD1560718 (ENSRNOG00000059551)	Unc93a (ENSRNOG00000047027)	Ttll2 (ENSRNOG00000033901)	Tcp10b (ENSRNOG00000013374)	Rps6ka2 (ENSRNOG00000013194) #19	Rnaset2 (ENSRNOG00000013190) #18	Cep43 (ENSRNOG00000055093) #17	Ccr6 (ENSRNOG00000012964) #16	Mpc1 (ENSRNOG00000012415) #20	Sft2d1 (ENSRNOG00000024140) #21	Prr18 (ENSRNOG00000070586)	ENSRNOG00000066810	T2 (ENSRNOG00000024172)	Tbxt (ENSRNOG00000012229) #22	Pde10a (ENSRNOG00000011310) #24	MGC94891 (ENSRNOG00000011243) #25	Pabpc6 (ENSRNOG00000017367)	Qki (ENSRNOG00000048297) #26	Pacrg (ENSRNOG00000068261) #27	Prkn (ENSRNOG00000055547) #28	Agpat4 (ENSRNOG00000017731) #29	Map3k4 (ENSRNOG00000017419) #30	AABR07001512.1 (ENSRNOG00000017412)	Plg (ENSRNOG00000017223) #31	Slc22a3 (ENSRNOG00000022946) #32	Slc22a2 (ENSRNOG00000016625) #33	Slc22a1 (ENSRNOG00000016337) #34	Igf2r (ENSRNOG00000014997) #35	Mas1 (ENSRNOG00000014971) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	906						ENSNGAG00000012008	Ttll2 (ENSNGAG00000012987)	ENSNGAG00000007143	Ccr6 (ENSNGAG00000020176) #16	Cep43 (ENSNGAG00000013354) #17	ENSNGAG00000014822 #18	ENSNGAG00000015365	Rps6ka2 (ENSNGAG00000017074) #19	ENSNGAG00000003126 #20	ENSNGAG00000013272 #21	ENSNGAG00000016587 #22	Pde10a (ENSNGAG00000006185) #24
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Camelidae	ANCESTRAL SPECIES	37	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Alpaca	MODERN SPECIES	1592																ENSVPAG00000011903 #22
Arabian camel	MODERN SPECIES	34	THBS2 (ENSCDRG00005018864)	SMOC2 (ENSCDRG00005006417)	ENSCDRG00005006599	ENSCDRG00005006634	ENSCDRG00005006727	AFDN (ENSCDRG00005006936)	UNC93A (ENSCDRG00005007860)	GPR31 (ENSCDRG00005007976)	CCR6 (ENSCDRG00005007993) #16	CEP43 (ENSCDRG00005008019) #17	RNASET2 (ENSCDRG00005008141) #18	RPS6KA2 (ENSCDRG00005008268) #19	ENSCDRG00005008762 #20	SFT2D1 (ENSCDRG00005008896) #21	ENSCDRG00005009017	TBXT (ENSCDRG00005009061) #22	PDE10A (ENSCDRG00005009275) #24	C6orf118 (ENSCDRG00005010197) #25	QKI (ENSCDRG00005010246) #26	PACRG (ENSCDRG00005010327) #27	PRKN (ENSCDRG00005010399) #28	AGPAT4 (ENSCDRG00005011648) #29	MAP3K4 (ENSCDRG00005011806) #30	ENSCDRG00005013803 #31	SLC22A3 (ENSCDRG00005014054) #32	SLC22A2 (ENSCDRG00005014141) #33	SLC22A1 (ENSCDRG00005014227) #34	IGF2R (ENSCDRG00005014304) #35	MAS1 (ENSCDRG00005014532) #36	PNLDC1 (ENSCDRG00005014558) #37	MRPL18 (ENSCDRG00005014810)
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000163337.b	ENSGT00940000162994.f.d.k.b	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a.c #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Percora_a	ANCESTRAL SPECIES	21	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a.c #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Bovidae	ANCESTRAL SPECIES	21	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a.c.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Bovinae	ANCESTRAL SPECIES	35	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a.c.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Bos	ANCESTRAL SPECIES	19	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00960000189610	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a.c.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Bos_a	ANCESTRAL SPECIES	54	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00960000189610	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a.c.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.a.a.b ##26	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Domestic yak	MODERN SPECIES	1	THBS2 (ENSBGRG00000008670)	SMOC2 (ENSBGRG00000008750)	ENSBGRG00000009024	ENSBGRG00000009164	ENSBGRG00000009297	AFDN (ENSBGRG00000009419)	UNC93A (ENSBGRG00000012262)	TTLL2 (ENSBGRG00000012397)	GPR31 (ENSBGRG00000012428)	CCR6 (ENSBGRG00000012482) #16	CEP43 (ENSBGRG00000012562) #17	ENSBGRG00000012908 #18	RPS6KA2 (ENSBGRG00000013026) #19	MPC1 (ENSBGRG00000013665) #20	ENSBGRG00000013792 #21	TBXT (ENSBGRG00000013963) #22	ENSBGRG00000014027	PDE10A (ENSBGRG00000014116) #24	C6orf118 (ENSBGRG00000014805) #25	QKI (ENSBGRG00000015040) ##26	ENSBGRG00000015527	PACRG (ENSBGRG00000015551) #27	PRKN (ENSBGRG00000015642) #28	ENSBGRG00000016774	AGPAT4 (ENSBGRG00000016794) #29	MAP3K4 (ENSBGRG00000017036) #30	ENSBGRG00000020575	ENSBGRG00000020646 #31	SLC22A3 (ENSBGRG00000020975) #32	SLC22A2 (ENSBGRG00000021163) #33	SLC22A1 (ENSBGRG00000021387) #34
Wild yak	MODERN SPECIES	1544																TBXT (ENSBMUG00000001220) #22
Bos_b	ANCESTRAL SPECIES	42	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00960000189610	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a.c.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Hybrid Bos Indicus	MODERN SPECIES	28	SMOC2 (ENSBIXG00005012408)	ENSBIXG00005012456	ENSBIXG00005001381	ENSBIXG00005001388	AFDN (ENSBIXG00005012820)	UNC93A (ENSBIXG00005012929)	TTLL2 (ENSBIXG00005001456)	ENSBIXG00005012953	GPR31 (ENSBIXG00005012976)	CCR6 (ENSBIXG00005007110) #16	CEP43 (ENSBIXG00005013080) #17	RNASET2 (ENSBIXG00005013120) #18	RPS6KA2 (ENSBIXG00005013242) #19	MPC1 (ENSBIXG00005006802) #20	SFT2D1 (ENSBIXG00005013324) #21	TBXT (ENSBIXG00005013358) #22	PDE10A (ENSBIXG00005013474) #24	C6orf118 (ENSBIXG00005013567) #25	ENSBIXG00005001665	QKI (ENSBIXG00005007533) ##26	ENSBIXG00005013801	PACRG (ENSBIXG00005013833) #27	PRKN (ENSBIXG00005007712) #28	AGPAT4 (ENSBIXG00005014474) #29	ENSBIXG00005006130	MAP3K4 (ENSBIXG00005002084) #30	ENSBIXG00005007542 #31	SLC22A3 (ENSBIXG00005014926) #32	SLC22A2 (ENSBIXG00005006381) #33	SLC22A1 (ENSBIXG00005015034) #34	IGF2R (ENSBIXG00005015279) #35
Cow	MODERN SPECIES	28	SMOC2 (ENSBTAG00000013176)	DACT2 (ENSBTAG00000031532)	FRMD1 (ENSBTAG00000014062)	KIF25 (ENSBTAG00000007694)	AFDN (ENSBTAG00000005557)	UNC93A (ENSBTAG00000014498)	TTLL2 (ENSBTAG00000031481)	GPR31 (ENSBTAG00000014497)	CCR6 (ENSBTAG00000014496) #16	ENSBTAG00000054087	CEP43 (ENSBTAG00000014495) #17	RNASET2 (ENSBTAG00000014494) #18	RPS6KA2 (ENSBTAG00000021741) #19	MPC1 (ENSBTAG00000027879) #20	SFT2D1 (ENSBTAG00000002993) #21	TBXT (ENSBTAG00000018681) #22	PDE10A (ENSBTAG00000007758) #24	C9H6orf118 (ENSBTAG00000015485) #25	QKI (ENSBTAG00000011593) #26	PACRG (ENSBTAG00000011106) #27	PRKN (ENSBTAG00000018996) #28	AGPAT4 (ENSBTAG00000007668) #29	ENSBTAG00000052236	MAP3K4 (ENSBTAG00000020079) #30	PLG (ENSBTAG00000001271) #31	SLC22A3 (ENSBTAG00000039080) #32	SLC22A2 (ENSBTAG00000009583) #33	SLC22A1 (ENSBTAG00000008540) #34	IGF2R (ENSBTAG00000002402) #35	MAS1 (ENSBTAG00000031724) #36	PNLDC1 (ENSBTAG00000015166) #37
American bison	MODERN SPECIES	3049												RNASET2 (ENSBBBG00000008672) #18	RPS6KA2 (ENSBBBG00000022362) #19	MPC1 (ENSBBBG00000005893) #20	ENSBBBG00000007688 #21	TBXT (ENSBBBG00000022311) #22	PDE10A (ENSBBBG00000022256) #24
Caprinae	ANCESTRAL SPECIES		ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a.c.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Goat	MODERN SPECIES	28	PHF10 (ENSCHIG00000020859)	WDR27 (ENSCHIG00000014042)	THBS2 (ENSCHIG00000016627)	SMOC2 (ENSCHIG00000024776)	ENSCHIG00000008025	AFDN (ENSCHIG00000022083)	TTLL2 (ENSCHIG00000023826)	ENSCHIG00000010837	ENSCHIG00000025672	CCR6 (ENSCHIG00000025437) #16	CEP43 (ENSCHIG00000023724) #17	RNASET2 (ENSCHIG00000021432) #18	RPS6KA2 (ENSCHIG00000016479) #19	MPC1 (ENSCHIG00000016041) #20	ENSCHIG00000010788 #21	TBXT (ENSCHIG00000011143) #22	ENSCHIG00000021177	ENSCHIG00000005334	ENSCHIG00000021845	PDE10A (ENSCHIG00000022822) #24	C6orf118 (ENSCHIG00000013027) #25	ENSCHIG00000012121	QKI (ENSCHIG00000018891) #26	ENSCHIG00000015636 #27	ENSCHIG00000022840 #27	ENSCHIG00000010884 #27	ENSCHIG00000016416 #28	ENSCHIG00000025260 #28	ENSCHIG00000020982 #28	AGPAT4 (ENSCHIG00000016729) #29	ENSCHIG00000024395
Rambouillet Sheep	MODERN SPECIES	24	THBS2 (ENSOARG00020026173)	SMOC2 (ENSOARG00020026168)	ENSOARG00020026165	ENSOARG00020026161	KIF25 (ENSOARG00020026158)	AFDN (ENSOARG00020026148)	UNC93A (ENSOARG00020026141)	TTLL2 (ENSOARG00020026140)	GPR31 (ENSOARG00020026138)	CCR6 (ENSOARG00020026137) #16	CEP43 (ENSOARG00020026135) #17	RNASET2 (ENSOARG00020026133) #18	RPS6KA2 (ENSOARG00020026129) #19	MPC1 (ENSOARG00020026121) #20	ENSOARG00020026119 #21	T (ENSOARG00020026117) #22	ENSOARG00020026114	PDE10A (ENSOARG00020026110) #24	C6orf118 (ENSOARG00020026106) #25	QKI (ENSOARG00020026100) #26	ENSOARG00020026099	PACRG (ENSOARG00020026098) #27	PRKN (ENSOARG00020026093) #28	AGPAT4 (ENSOARG00020026075) #29	MAP3K4 (ENSOARG00020025996) #30	ENSOARG00020025929 #31	SLC22A3 (ENSOARG00020025917) #32	SLC22A2 (ENSOARG00020025906) #33	SLC22A1 (ENSOARG00020025899) #34	IGF2R (ENSOARG00020007810) #35	MAS1 (ENSOARG00020006641) #36
Siberian musk deer	MODERN SPECIES	61	WDR27 (ENSMMSG00000004495)	THBS2 (ENSMMSG00000004445)	SMOC2 (ENSMMSG00000004418)	ENSMMSG00000004399	KIF25 (ENSMMSG00000004380)	AFDN (ENSMMSG00000004278)	UNC93A (ENSMMSG00000004249)	TTLL2 (ENSMMSG00000004233)	GPR31 (ENSMMSG00000004230)	CCR6 (ENSMMSG00000004222) #16	CEP43 (ENSMMSG00000004190) #17	RNASET2 (ENSMMSG00000004161) #18	RPS6KA2 (ENSMMSG00000004107) #19	MPC1 (ENSMMSG00000004070) #20	ENSMMSG00000004063 #21	TBXT (ENSMMSG00000004018) #22	PDE10A (ENSMMSG00000003706) #24	C6orf118 (ENSMMSG00000003599) #25	QKI (ENSMMSG00000003545) #26	PACRG (ENSMMSG00000003517) #27	ENSMMSG00000003500	PRKN (ENSMMSG00000003365) #28	AGPAT4 (ENSMMSG00000003318) #29	MAP3K4 (ENSMMSG00000002913) #30	ENSMMSG00000002739	ENSMMSG00000002676 #31	SLC22A3 (ENSMMSG00000002642) #32	SLC22A2 (ENSMMSG00000002601) #33	SLC22A1 (ENSMMSG00000002522) #34	IGF2R (ENSMMSG00000002420) #35	MAS1 (ENSMMSG00000002388) #36
Yarkand deer	MODERN SPECIES	18	ENSCHYG00000026761	ENSCHYG00000026752	FRMD1 (ENSCHYG00000026739)	ENSCHYG00000026733	AFDN (ENSCHYG00000026646)	UNC93A (ENSCHYG00000026589)	TTLL2 (ENSCHYG00000026577)	ENSCHYG00000026568	GPR31 (ENSCHYG00000026561)	CCR6 (ENSCHYG00000026557) #16	ENSCHYG00000026541 #17	RNASET2 (ENSCHYG00000026522) #18	RPS6KA2 (ENSCHYG00000026381) #19	MPC1 (ENSCHYG00000026331) #20	SFT2D1 (ENSCHYG00000026311) #21	TBXT (ENSCHYG00000026275) #22	ENSCHYG00000026255	PDE10A (ENSCHYG00000026108) #24	C6orf118 (ENSCHYG00000026045) #25	QKI (ENSCHYG00000026014) #26	PACRG (ENSCHYG00000025979) #27	PRKN (ENSCHYG00000025824) #28	AGPAT4 (ENSCHYG00000025772) #29	MAP3K4 (ENSCHYG00000025579) #30	ENSCHYG00000025465 #31	SLC22A3 (ENSCHYG00000025420) #32	SLC22A2 (ENSCHYG00000025351) #33	SLC22A1 (ENSCHYG00000025285) #34	IGF2R (ENSCHYG00000023202) #35	MAS1 (ENSCHYG00000022925) #36	PNLDC1 (ENSCHYG00000022800) #37
Cetacea	ANCESTRAL SPECIES	18	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00940000153877.h.c.b.b	ENSGT00940000154508.a.a.h	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00390000018085.a.b.b	ENSGT00940000162065 #34	ENSGT00390000013943 #35
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00940000153877.h.c.b.b	ENSGT00940000154508.a.a.h	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00390000018085.a.b.b	ENSGT00940000162065 #34	ENSGT00390000013943 #35
Narwhal	MODERN SPECIES	301	C6orf120 (ENSMMNG00015005595)	THBS2 (ENSMMNG00015005517)	SMOC2 (ENSMMNG00015005479)	DACT2 (ENSMMNG00015005450)	FRMD1 (ENSMMNG00015005432)	ENSMMNG00015012486	AFDN (ENSMMNG00015012415)	UNC93A (ENSMMNG00015012361)	GPR31 (ENSMMNG00015012351)	CCR6 (ENSMMNG00015012341) #16	CEP43 (ENSMMNG00015012318) #17	RNASET2 (ENSMMNG00015012292) #18	RPS6KA2 (ENSMMNG00015012184) #19	MPC1 (ENSMMNG00015012133) #20	SFT2D1 (ENSMMNG00015012112) #21	TBXT (ENSMMNG00015012069) #22	PDE10A (ENSMMNG00015011925) #24	C6orf118 (ENSMMNG00015011860) #25	QKI (ENSMMNG00015011839) #26	PACRG (ENSMMNG00015011827) #27	ENSMMNG00015011816	AGPAT4 (ENSMMNG00015011728) #29	MAP3K4 (ENSMMNG00015011572) #30	ENSMMNG00015011493 #31	SLC22A3 (ENSMMNG00015011477) #32	SLC22A2 (ENSMMNG00015011459) #33	ENSMMNG00015011446	SLC22A1 (ENSMMNG00015011429) #34	IGF2R (ENSMMNG00015011406) #35	MAS1 (ENSMMNG00015011391) #36	PNLDC1 (ENSMMNG00015011367) #37
Beluga whale	MODERN SPECIES	80	ENSDLEG00000009291	THBS2 (ENSDLEG00000009218)	SMOC2 (ENSDLEG00000009149)	DACT2 (ENSDLEG00000009128)	FRMD1 (ENSDLEG00000009084)	AFDN (ENSDLEG00000008803)	UNC93A (ENSDLEG00000008686)	GPR31 (ENSDLEG00000008676)	CCR6 (ENSDLEG00000008660) #16	FGFR1OP (ENSDLEG00000008619) #17	RNASET2 (ENSDLEG00000008582) #18	RPS6KA2 (ENSDLEG00000008370) #19	MPC1 (ENSDLEG00000008231) #20	SFT2D1 (ENSDLEG00000008117) #21	ENSDLEG00000014310	TBXT (ENSDLEG00000014293) #22	PDE10A (ENSDLEG00000014196) #24	C6orf118 (ENSDLEG00000014153) #25	QKI (ENSDLEG00000014103) #26	ENSDLEG00000014088 #27	ENSDLEG00000014077 #27	ENSDLEG00000014063	ENSDLEG00000014046	ENSDLEG00000014031	AGPAT4 (ENSDLEG00000013962) #29	MAP3K4 (ENSDLEG00000013778) #30	PLG (ENSDLEG00000013736) #31	SLC22A3 (ENSDLEG00000013670) #32	SLC22A2 (ENSDLEG00000013647) #33	SLC22A1 (ENSDLEG00000013591) #34	IGF2R (ENSDLEG00000013373) #35
Vaquita	MODERN SPECIES	3	C6orf120 (ENSPSNG00000009759)	ENSPSNG00000009798	THBS2 (ENSPSNG00000009838)	SMOC2 (ENSPSNG00000009968)	DACT2 (ENSPSNG00000010088)	FRMD1 (ENSPSNG00000010162)	AFDN (ENSPSNG00000010491)	UNC93A (ENSPSNG00000011811)	GPR31 (ENSPSNG00000011991)	CCR6 (ENSPSNG00000012011) #16	CEP43 (ENSPSNG00000012059) #17	RNASET2 (ENSPSNG00000012163) #18	RPS6KA2 (ENSPSNG00000012290) #19	MPC1 (ENSPSNG00000012700) #20	SFT2D1 (ENSPSNG00000012816) #21	TBXT (ENSPSNG00000012892) #22	PDE10A (ENSPSNG00000013372) #24	QKI (ENSPSNG00000015355) #26	PACRG (ENSPSNG00000015572) #27	PRKN (ENSPSNG00000015749) #28	ENSPSNG00000016356	ENSPSNG00000016413	AGPAT4 (ENSPSNG00000016495) #29	MAP3K4 (ENSPSNG00000016678) #30	ENSPSNG00000016905 #31	SLC22A3 (ENSPSNG00000017154) #32	SLC22A2 (ENSPSNG00000017306) #33	ENSPSNG00000017468	ENSPSNG00000017517 #34	IGF2R (ENSPSNG00000017592) #35	MAS1 (ENSPSNG00000017797) #36
Dolphin	MODERN SPECIES	1530																TBXT (ENSTTRG00000016665) #22
Sperm whale	MODERN SPECIES	1	TBP (ENSPCTG00005000605)	PSMB1 (ENSPCTG00005000648)	FAM120B (ENSPCTG00005000692)	DLL1 (ENSPCTG00005000763)	THBS2 (ENSPCTG00005000803)	SMOC2 (ENSPCTG00005000882)	DACT2 (ENSPCTG00005000897)	AFDN (ENSPCTG00005001219)	GPR31 (ENSPCTG00005001742)	CCR6 (ENSPCTG00005001752) #16	FGFR1OP (ENSPCTG00005001773) #17	RNASET2 (ENSPCTG00005001817) #18	RPS6KA2 (ENSPCTG00005001904) #19	MPC1 (ENSPCTG00005002036) #20	SFT2D1 (ENSPCTG00005002060) #21	TBXT (ENSPCTG00005002094) #22	PDE10A (ENSPCTG00005002171) #24	QKI (ENSPCTG00005002421) #26	PACRG (ENSPCTG00005002460) #27	ENSPCTG00005002486 #28	ENSPCTG00005002514	ENSPCTG00005002531	MAP3K4 (ENSPCTG00005002630) #30	ENSPCTG00005002991	ENSPCTG00005003046 #31	SLC22A3 (ENSPCTG00005003082) #32	ENSPCTG00005003105	SLC22A2 (ENSPCTG00005003126) #33	SLC22A1 (ENSPCTG00005003152) #34	IGF2R (ENSPCTG00005003188) #35	MAS1 (ENSPCTG00005003224) #36
Blue whale	MODERN SPECIES	3	C6orf120 (ENSBMSG00010009587)	ENSBMSG00010009592	THBS2 (ENSBMSG00010009601)	SMOC2 (ENSBMSG00010009620)	DACT2 (ENSBMSG00010009647)	FRMD1 (ENSBMSG00010009676)	AFDN (ENSBMSG00010009709)	UNC93A (ENSBMSG00010009745)	GPR31 (ENSBMSG00010009771)	CCR6 (ENSBMSG00010009781) #16	CEP43 (ENSBMSG00010009801) #17	ENSBMSG00010009839 #18	RPS6KA2 (ENSBMSG00010009920) #19	MPC1 (ENSBMSG00010010171) #20	SFT2D1 (ENSBMSG00010010197) #21	TBXT (ENSBMSG00010010219) #22	PDE10A (ENSBMSG00010010298) #24	C6orf118 (ENSBMSG00010010372) #25	QKI (ENSBMSG00010010393) #26	ENSBMSG00010010411 #27	ENSBMSG00010010418	PRKN (ENSBMSG00010010461) #28	ENSBMSG00010010664	AGPAT4 (ENSBMSG00010010688) #29	MAP3K4 (ENSBMSG00010010709) #30	ENSBMSG00010010741 #31	SLC22A3 (ENSBMSG00010010779) #32	SLC22A2 (ENSBMSG00010010814) #33	SLC22A1 (ENSBMSG00010010839) #34	ENSBMSG00010010858	IGF2R (ENSBMSG00010010889) #35
Suina	ANCESTRAL SPECIES	18	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394	ENSGT00550000074878
Pig	MODERN SPECIES		SMOC2 (ENSSSCG00000004013)	DACT2 (ENSSSCG00000031703)	FRMD1 (ENSSSCG00000004017)	ENSSSCG00000004016	AFDN (ENSSSCG00000004018)	UNC93A (ENSSSCG00000027404)	ENSSSCG00000032403	GPR31 (ENSSSCG00000062590)	CCR6 (ENSSSCG00000024562) #16	ENSSSCG00000034196	CEP43 (ENSSSCG00000004023) #17	ENSSSCG00000004024 #18	RPS6KA2 (ENSSSCG00000004022) #19	ENSSSCG00000032916 #20	SFT2D1 (ENSSSCG00000004020) #21	TBXT (ENSSSCG00000036609) #22	PDE10A (ENSSSCG00000004027) #24	ENSSSCG00000051306	QKI (ENSSSCG00000004029) #26	PACRG (ENSSSCG00000038153) #27	ENSSSCG00000047165	PRKN (ENSSSCG00000004032) #28	ENSSSCG00000053549	AGPAT4 (ENSSSCG00000004033) #29	MAP3K4 (ENSSSCG00000004037) #30	PLG (ENSSSCG00000004038) #31	SLC22A3 (ENSSSCG00000004039) #32	SLC22A2 (ENSSSCG00000004040) #33	SLC22A1 (ENSSSCG00000004041) #34	IGF2R (ENSSSCG00000004044) #35	MAS1 (ENSSSCG00000059431) #36
Chacoan peccary	MODERN SPECIES	66								UNC93A (ENSCWAG00000020371)	GPR31 (ENSCWAG00000020324)	CCR6 (ENSCWAG00000020319) #16	CEP43 (ENSCWAG00000020301) #17	RNASET2 (ENSCWAG00000020254) #18	RPS6KA2 (ENSCWAG00000020169) #19	MPC1 (ENSCWAG00000020147) #20	SFT2D1 (ENSCWAG00000020135) #21	TBXT (ENSCWAG00000020086) #22	PDE10A (ENSCWAG00000019393) #24	QKI (ENSCWAG00000019227) #26	ENSCWAG00000019203 #27
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988.i.a #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Equus	ANCESTRAL SPECIES	46	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988.i.a #20	ENSGT00390000018525.a.a #21	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Horse	MODERN SPECIES	24	DACT2 (ENSECAG00000013363)	ENSECAG00000056197	FRMD1 (ENSECAG00000010465)	KIF25 (ENSECAG00000008965)	AFDN (ENSECAG00000014680)	UNC93A (ENSECAG00000008764)	ENSECAG00000003447	GPR31 (ENSECAG00000005409)	CCR6 (ENSECAG00000005185) #16	CEP43 (ENSECAG00000019040) #17	RNASET2 (ENSECAG00000038762) #18	RPS6KA2 (ENSECAG00000020508) #19	MPC1 (ENSECAG00000020275) #20	SFT2D1 (ENSECAG00000019479) #21	ENSECAG00000028989	TBXT (ENSECAG00000007994) #22	PDE10A (ENSECAG00000008004) #24	C31H6orf118 (ENSECAG00000000126) #25	QKI (ENSECAG00000017504) #26	PACRG (ENSECAG00000014308) #27	PRKN (ENSECAG00000004645) #28	AGPAT4 (ENSECAG00000001189) #29	MAP3K4 (ENSECAG00000012724) #30	ENSECAG00000031093	ENSECAG00000007979 #31	SLC22A3 (ENSECAG00000004372) #32	SLC22A2 (ENSECAG00000021017) #33	SLC22A1 (ENSECAG00000016404) #34	ENSECAG00000044529	IGF2R (ENSECAG00000019509) #35	MAS1 (ENSECAG00000028126) #36
Donkey	MODERN SPECIES	20	ENSEASG00005000507	ENSEASG00005000482	ENSEASG00005000454	AFDN (ENSEASG00005000410)	ENSEASG00005000398	ENSEASG00005026055	ENSEASG00005027533	CCR6 (ENSEASG00005028790) #16	CEP43 (ENSEASG00005000363) #17	RNASET2 (ENSEASG00005000345) #18	RPS6KA2 (ENSEASG00005000339) #19	ENSEASG00005029716 #20	SFT2D1 (ENSEASG00005028687) #21	ENSEASG00005011917	ENSEASG00005000239	TBXT (ENSEASG00005000114) #22	PDE10A (ENSEASG00005019729) #24	C6orf118 (ENSEASG00005019727) #25	QKI (ENSEASG00005019724) #26	PACRG (ENSEASG00005019723) #27	PRKN (ENSEASG00005019721) #28	ENSEASG00005019711 #29	ENSEASG00005019709	MAP3K4 (ENSEASG00005019701) #30	ENSEASG00005019697 #31	SLC22A3 (ENSEASG00005019679) #32	SLC22A2 (ENSEASG00005019670) #33	SLC22A1 (ENSEASG00005019667) #34	IGF2R (ENSEASG00005019232) #35	MAS1 (ENSEASG00005019033) #36	PNLDC1 (ENSEASG00005019029) #37
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988.j #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Megabat	MODERN SPECIES	1907																TBXT (ENSPVAG00000001151) #22
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988.j #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Microbat	MODERN SPECIES	1285															ENSMLUG00000010982 #21	TBXT (ENSMLUG00000011294) #22	PDE10A (ENSMLUG00000006020) #24	ENSMLUG00000003358 #25	QKI (ENSMLUG00000002829) #26
Greater horseshoe bat	MODERN SPECIES	43	THBS2 (ENSRFEG00010017238)	SMOC2 (ENSRFEG00010017158)	DACT2 (ENSRFEG00010017136)	ENSRFEG00010017041	KIF25 (ENSRFEG00010016920)	AFDN (ENSRFEG00010016618)	UNC93A (ENSRFEG00010016531)	TTLL2 (ENSRFEG00010016487)	GPR31 (ENSRFEG00010016471)	CCR6 (ENSRFEG00010016432) #16	CEP43 (ENSRFEG00010016308) #17	RNASET2 (ENSRFEG00010016230) #18	RPS6KA2 (ENSRFEG00010015929) #19	MPC1 (ENSRFEG00010015775) #20	SFT2D1 (ENSRFEG00010015726) #21	TBXT (ENSRFEG00010015487) #22
Carnivora	ANCESTRAL SPECIES	4	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Caniformia	ANCESTRAL SPECIES	3	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000171186	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Canidae	ANCESTRAL SPECIES	34	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000171186	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00950000185354	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000003582.q.a.b.b.b	ENSGT00940000157912 #22	ENSGT00940000171186	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.a.b.b	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Dog	MODERN SPECIES		ENSCAFG00845004891	UNC93A (ENSCAFG00845004882)	ENSCAFG00845004871	ENSCAFG00845004865	ENSCAFG00845004856	ENSCAFG00845004845	GPR31 (ENSCAFG00845004842)	CCR6 (ENSCAFG00845004836) #16	ENSCAFG00845004827	CEP43 (ENSCAFG00845004808) #17	RNASET2 (ENSCAFG00845004774) #18	RPS6KA2 (ENSCAFG00845004742) #19	MPC1 (ENSCAFG00845004722) #20	SFT2D1 (ENSCAFG00845004712) #21	ENSCAFG00845004701	TBXT (ENSCAFG00845004679) #22	ENSCAFG00845004656	PDE10A (ENSCAFG00845004510) #24	C6orf118 (ENSCAFG00845004390) #25	ENSCAFG00845004368	QKI (ENSCAFG00845002617) #26	PACRG (ENSCAFG00845002583) #27	PRKN (ENSCAFG00845002459) #28	AGPAT4 (ENSCAFG00845002356) #29	MAP3K4 (ENSCAFG00845002271) #30	PLG (ENSCAFG00845002222) #31	SLC22A3 (ENSCAFG00845002183) #32	SLC22A2 (ENSCAFG00845002163) #33	SLC22A1 (ENSCAFG00845002132) #34	IGF2R (ENSCAFG00845002089) #35	MAS1 (ENSCAFG00845002042) #36
Dingo	MODERN SPECIES	125	DACT2 (ENSCAFG00020021138)	KIF25 (ENSCAFG00020021134)	AFDN (ENSCAFG00020019469)	UNC93A (ENSCAFG00020019373)	TTLL2 (ENSCAFG00020019369)	ENSCAFG00020019364	GPR31 (ENSCAFG00020019357)	CCR6 (ENSCAFG00020019355) #16	ENSCAFG00020019351	CEP43 (ENSCAFG00020019346) #17	ENSCAFG00020019344 #18	RPS6KA2 (ENSCAFG00020019329) #19	ENSCAFG00020019314 #20	SFT2D1 (ENSCAFG00020019308) #21	ENSCAFG00020019299	TBXT (ENSCAFG00020019286) #22	ENSCAFG00020019285	ENSCAFG00020019279	PDE10A (ENSCAFG00020019197) #24	C6orf118 (ENSCAFG00020019164) #25	ENSCAFG00020019148	ENSCAFG00020019146	ENSCAFG00020019125	ENSCAFG00020019102	QKI (ENSCAFG00020019085) #26	ENSCAFG00020019027 #27	ENSCAFG00020018978	ENSCAFG00020018975 #28	ENSCAFG00020018908 #28	ENSCAFG00020018877 #28	AGPAT4 (ENSCAFG00020018873) #29
Red fox	MODERN SPECIES	119		ENSVVUG00000021651	FRMD1 (ENSVVUG00000021653)	ENSVVUG00000021657	AFDN (ENSVVUG00000021664)	UNC93A (ENSVVUG00000021681)	TTLL2 (ENSVVUG00000021682)	ENSVVUG00000021683	GPR31 (ENSVVUG00000021684)	CCR6 (ENSVVUG00000021685) #16	CEP43 (ENSVVUG00000021689) #17	RNASET2 (ENSVVUG00000021691) #18	RPS6KA2 (ENSVVUG00000021694) #19	MPC1 (ENSVVUG00000021696) #20	SFT2D1 (ENSVVUG00000021697) #21	TBXT (ENSVVUG00000021698) #22	ENSVVUG00000021701	PDE10A (ENSVVUG00000001300) #24	CUNH6orf118 (ENSVVUG00000001400) #25	ENSVVUG00000001421	QKI (ENSVVUG00000001467) #26	ENSVVUG00000001516 #27	ENSVVUG00000001531 #27	ENSVVUG00000001546 #27	ENSVVUG00000001570 #28	ENSVVUG00000001590 #28	AGPAT4 (ENSVVUG00000001618) #29	MAP3K4 (ENSVVUG00000001652) #30	ENSVVUG00000001770	PLG (ENSVVUG00000001801) #31	SLC22A3 (ENSVVUG00000001828) #32
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000171186	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Ursidae	ANCESTRAL SPECIES	22	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000171186	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Ursus	ANCESTRAL SPECIES	81	ENSGT00390000012017	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000171186	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00970000197976	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
American black bear	MODERN SPECIES	5413																TBXT (ENSUAMG00000022364) #22
Polar bear	MODERN SPECIES	150	C6orf120 (ENSUMAG00000008635)	WDR27 (ENSUMAG00000008657)	THBS2 (ENSUMAG00000008727)	SMOC2 (ENSUMAG00000009131)	ENSUMAG00000009159	AFDN (ENSUMAG00000009347)	UNC93A (ENSUMAG00000011469)	ENSUMAG00000011474	GPR31 (ENSUMAG00000011480)	CCR6 (ENSUMAG00000011482) #16	CEP43 (ENSUMAG00000011487) #17	ENSUMAG00000011501 #18	RPS6KA2 (ENSUMAG00000011529) #19	MPC1 (ENSUMAG00000011553) #20	ENSUMAG00000011556 #21	TBXT (ENSUMAG00000011569) #22	ENSUMAG00000011603	PDE10A (ENSUMAG00000011612) #24	C6orf118 (ENSUMAG00000011626) #25	ENSUMAG00000011639	QKI (ENSUMAG00000011658) #26	ENSUMAG00000011678 #27	ENSUMAG00000011681 #27	ENSUMAG00000011688 #28	ENSUMAG00000011694	ENSUMAG00000011702 #28	ENSUMAG00000011710	ENSUMAG00000011729 #28	AGPAT4 (ENSUMAG00000011739) #29	MAP3K4 (ENSUMAG00000011760) #30	ENSUMAG00000011793 #31
Giant Panda	MODERN SPECIES	1	ENSAMEG00000027619	FRMD1 (ENSAMEG00000009505)	ENSAMEG00000009494	ENSAMEG00000009474	ENSAMEG00000009446	ENSAMEG00000009444	ENSAMEG00000024255	ENSAMEG00000009418	CCR6 (ENSAMEG00000028123) #16	ENSAMEG00000009406 #17	ENSAMEG00000009382 #18	ENSAMEG00000009376	RPS6KA2 (ENSAMEG00000009322) #19	MPC1 (ENSAMEG00000009318) #20	SFT2D1 (ENSAMEG00000009311) #21	TBXT (ENSAMEG00000009278) #22	PDE10A (ENSAMEG00000008225) #24	C6orf118 (ENSAMEG00000008271) #25	ENSAMEG00000028308	ENSAMEG00000027289 #26	QKI (ENSAMEG00000008459) #26	PACRG (ENSAMEG00000008449) #27	PRKN (ENSAMEG00000015876) #28	ENSAMEG00000015885 #29	MAP3K4 (ENSAMEG00000015908) #30	ENSAMEG00000015960 #31	SLC22A3 (ENSAMEG00000015037) #32	SLC22A2 (ENSAMEG00000015045) #33	SLC22A1 (ENSAMEG00000015110) #34	IGF2R (ENSAMEG00000015172) #35	MAS1 (ENSAMEG00000019584) #36
Mustelinae	ANCESTRAL SPECIES	141	ENSGT00390000018879	ENSGT00390000012017	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343
Ferret	MODERN SPECIES	311	ENSMPUG00000020196	ENSMPUG00000006603	AFDN (ENSMPUG00000006585)	ENSMPUG00000006578	ENSMPUG00000006573	ENSMPUG00000006567	TTLL2 (ENSMPUG00000006555)	ENSMPUG00000006548	GPR31 (ENSMPUG00000020195)	CCR6 (ENSMPUG00000006543) #16	CEP43 (ENSMPUG00000006531) #17	RNASET2 (ENSMPUG00000006468) #18	RPS6KA2 (ENSMPUG00000006452) #19	MPC1 (ENSMPUG00000006432) #20	ENSMPUG00000006424	TBXT (ENSMPUG00000006418) #22	ENSMPUG00000006413	PDE10A (ENSMPUG00000006396) #24	C6orf118 (ENSMPUG00000006389) #25	ENSMPUG00000006378	ENSMPUG00000006374	QKI (ENSMPUG00000006368) #26	ENSMPUG00000006361 #27	ENSMPUG00000006352
American mink	MODERN SPECIES	212												RNASET2 (ENSNVIG00000018487) #18	RPS6KA2 (ENSNVIG00000018379) #19	MPC1 (ENSNVIG00000018351) #20	SFT2D1 (ENSNVIG00000018339) #21	TBXT (ENSNVIG00000018332) #22	PDE10A (ENSNVIG00000018209) #24	C6orf118 (ENSNVIG00000018192) #25	ENSNVIG00000018185	QKI (ENSNVIG00000018179) #26	PACRG (ENSNVIG00000018167) #27
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Cat	MODERN SPECIES	236	THBS2 (ENSFCAG00000002420)	SMOC2 (ENSFCAG00000002419)	DACT2 (ENSFCAG00000040491)	FRMD1 (ENSFCAG00000041618)	KIF25 (ENSFCAG00000030309)	AFDN (ENSFCAG00000000864)	UNC93A (ENSFCAG00000006973)	GPR31 (ENSFCAG00000044243)	CCR6 (ENSFCAG00000046616) #16	CEP43 (ENSFCAG00000005106) #17	RNASET2 (ENSFCAG00000031545) #18	RPS6KA2 (ENSFCAG00000005103) #19	MPC1 (ENSFCAG00000038385) #20	SFT2D1 (ENSFCAG00000033223) #21	ENSFCAG00000051868	TBXT (ENSFCAG00000000777) #22	PDE10A (ENSFCAG00000012867) #24	CB2H6orf118 (ENSFCAG00000045037) #25	QKI (ENSFCAG00000019399) #26	PACRG (ENSFCAG00000028010) #27	ENSFCAG00000034013	PRKN (ENSFCAG00000038081) #28	AGPAT4 (ENSFCAG00000000357) #29	ENSFCAG00000038094	MAP3K4 (ENSFCAG00000000356) #30	PLG (ENSFCAG00000023975) #31	SLC22A3 (ENSFCAG00000000355) #32	SLC22A2 (ENSFCAG00000002852) #33	SLC22A1 (ENSFCAG00000002851) #34	IGF2R (ENSFCAG00000002850) #35	MAS1 (ENSFCAG00000002849) #36
Panthera	ANCESTRAL SPECIES	7	ENSGT00390000012017	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00390000012017	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
lion	MODERN SPECIES	5	WDR27 (ENSPLOG00000004880)	ENSPLOG00000004847	THBS2 (ENSPLOG00000004817)	SMOC2 (ENSPLOG00000004781)	DACT2 (ENSPLOG00000004757)	KIF25 (ENSPLOG00000004705)	AFDN (ENSPLOG00000004692)	UNC93A (ENSPLOG00000004674)	GPR31 (ENSPLOG00000004665)	CCR6 (ENSPLOG00000004660) #16	CEP43 (ENSPLOG00000004651) #17	ENSPLOG00000004632 #18	RPS6KA2 (ENSPLOG00000004555) #19	MPC1 (ENSPLOG00000004524) #20	SFT2D1 (ENSPLOG00000004514) #21	TBXT (ENSPLOG00000004499) #22	PDE10A (ENSPLOG00000004454) #24	C6orf118 (ENSPLOG00000004379) #25	QKI (ENSPLOG00000004330) #26	PACRG (ENSPLOG00000004324) #27	PRKN (ENSPLOG00000004285) #28	AGPAT4 (ENSPLOG00000004245) #29	MAP3K4 (ENSPLOG00000004139) #30	ENSPLOG00000004087 #31	ENSPLOG00000004079 #31	ENSPLOG00000004061 #31	SLC22A3 (ENSPLOG00000004048) #32	SLC22A2 (ENSPLOG00000004027) #33	SLC22A1 (ENSPLOG00000004002) #34	IGF2R (ENSPLOG00000003880) #35	MAS1 (ENSPLOG00000003857) #36
leopard	MODERN SPECIES	59	THBS2 (ENSPPRG00000011283)	SMOC2 (ENSPPRG00000011589)	ENSPPRG00000011757	ENSPPRG00000011962	KIF25 (ENSPPRG00000015361)	AFDN (ENSPPRG00000000999)	UNC93A (ENSPPRG00000001893)	GPR31 (ENSPPRG00000014821)	CCR6 (ENSPPRG00000002424) #16	CEP43 (ENSPPRG00000004055) #17	ENSPPRG00000004367	RNASET2 (ENSPPRG00000005136) #18	RPS6KA2 (ENSPPRG00000007163) #19	MPC1 (ENSPPRG00000007955) #20	SFT2D1 (ENSPPRG00000008072) #21	TBXT (ENSPPRG00000008721) #22	PDE10A (ENSPPRG00000012201) #24	C6orf118 (ENSPPRG00000012423) #25	QKI (ENSPPRG00000013383) #26	PACRG (ENSPPRG00000018305) #27	PRKN (ENSPPRG00000002801) #28	AGPAT4 (ENSPPRG00000003125) #29	MAP3K4 (ENSPPRG00000007372) #30	ENSPPRG00000007637 #31	SLC22A3 (ENSPPRG00000007817) #32	SLC22A2 (ENSPPRG00000008200) #33	SLC22A1 (ENSPPRG00000009083) #34	IGF2R (ENSPPRG00000010975) #35	MAS1 (ENSPPRG00000016120) #36	PNLDC1 (ENSPPRG00000012854) #37	MRPL18 (ENSPPRG00000013063)
Tiger	MODERN SPECIES	551									UNC93A (ENSPTIG00000017005)	CCR6 (ENSPTIG00000015495) #16	CEP43 (ENSPTIG00000011871) #17	RNASET2 (ENSPTIG00000010220) #18	RPS6KA2 (ENSPTIG00000021230) #19	MPC1 (ENSPTIG00000020905) #20	SFT2D1 (ENSPTIG00000019417) #21	TBXT (ENSPTIG00000017818) #22	PDE10A (ENSPTIG00000013592) #24	C6orf118 (ENSPTIG00000012856) #25	QKI (ENSPTIG00000008797) #26	ENSPTIG00000002521	ENSPTIG00000007481	PACRG (ENSPTIG00000004368) #27	PRKN (ENSPTIG00000021925) #28	AGPAT4 (ENSPTIG00000021603) #29	MAP3K4 (ENSPTIG00000017590) #30	ENSPTIG00000010411 #31	SLC22A3 (ENSPTIG00000008644) #32	SLC22A2 (ENSPTIG00000006985) #33	SLC22A1 (ENSPTIG00000019426) #34	IGF2R (ENSPTIG00000015202) #35	ENSPTIG00000014351
Atlantogenata	ANCESTRAL SPECIES	96									ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00420000030417	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00940000168329	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Afrotheria	ANCESTRAL SPECIES	113						ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00940000168329	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Tenrec	MODERN SPECIES	5655																ENSETEG00000014864 #22
Afrotheria_a	ANCESTRAL SPECIES	116						ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00940000168329	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Hyrax	MODERN SPECIES	4772																ENSPCAG00000011680 #22
Elephant	MODERN SPECIES	520				SMOC2 (ENSLAFG00000000049)	ENSLAFG00000030561	ENSLAFG00000000840	AFDN (ENSLAFG00000002771)	TTLL2 (ENSLAFG00000011626)	GPR31 (ENSLAFG00000022903)	CCR6 (ENSLAFG00000020827) #16	CEP43 (ENSLAFG00000008016) #17	RNASET2 (ENSLAFG00000003359) #18	RPS6KA2 (ENSLAFG00000027838) #19	MPC1 (ENSLAFG00000025901) #20	ENSLAFG00000027160	TBXT (ENSLAFG00000012505) #22	ENSLAFG00000001674 #24	C6orf118 (ENSLAFG00000001672) #25	QKI (ENSLAFG00000021654) #26	PACRG (ENSLAFG00000002732) #27	ENSLAFG00000003358	ENSLAFG00000031170	AGPAT4 (ENSLAFG00000021414) #29	MAP3K4 (ENSLAFG00000012768) #30	ENSLAFG00000004237 #31	SLC22A3 (ENSLAFG00000005825) #32	SLC22A2 (ENSLAFG00000011288) #33	SLC22A1 (ENSLAFG00000011681) #34	IGF2R (ENSLAFG00000017191) #35	MAS1 (ENSLAFG00000001539) #36	PNLDC1 (ENSLAFG00000030189) #37
Xenarthra	ANCESTRAL SPECIES	784													ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00690000103860	ENSGT00940000157912 #22	ENSGT00420000030417	ENSGT00940000156543 #24	ENSGT00390000009877 #25
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2287													RPS6KA2 (ENSDNOG00000047970) #19	ENSDNOG00000001205 #20	ENSDNOG00000037957	ENSDNOG00000016178 #22	ENSDNOG00000044916	PDE10A (ENSDNOG00000018678) #24	C6orf118 (ENSDNOG00000018672) #25	ENSDNOG00000035662
Armadillo	MODERN SPECIES	3404																ENSDNOG00000030964 #22	SLC36A4 (ENSDNOG00000040589)	DEUP1 (ENSDNOG00000003919)	SMCO4 (ENSDNOG00000014946)	ENSDNOG00000031219	CEP295 (ENSDNOG00000004202)	TAF1D (ENSDNOG00000041284)	C11orf54 (ENSDNOG00000004224)	MED17 (ENSDNOG00000038310)	VSTM5 (ENSDNOG00000025124)
Sloth	MODERN SPECIES	5175																TBXT (ENSCHOG00000006236) #22
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00940000168329	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a.ab #36
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A.b	ENSGT00530000063359.A.a	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00940000168329	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089 #33	ENSGT00940000162065 #34	ENSGT00390000013943 #35	ENSGT01030000234639.A.a.ab #36
Diprotodontia	ANCESTRAL SPECIES	63	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A.b	ENSGT00530000063359.A.a	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25
Diprotodontia_a	ANCESTRAL SPECIES	61	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A.b	ENSGT00530000063359.A.a	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956 #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25
koala	MODERN SPECIES	204	AFDN (ENSPCIG00000012917)	ENSPCIG00000036773	ENSPCIG00000032251	ENSPCIG00000001072	ENSPCIG00000032715	ENSPCIG00000001044	CCR6 (ENSPCIG00000001021) #16	CEP43 (ENSPCIG00000000985) #17	RNASET2 (ENSPCIG00000000971) #18	ENSPCIG00000000949	ENSPCIG00000000927	RPS6KA2 (ENSPCIG00000000840) #19	MPC1 (ENSPCIG00000016667) #20	SFT2D1 (ENSPCIG00000016665) #21	ENSPCIG00000016663	TBXT (ENSPCIG00000024819) #22	ENSPCIG00000001855	PDE10A (ENSPCIG00000026876) #24	ENSPCIG00000026880 #25
Common wonbat	MODERN SPECIES	1119				ENSVURG00010011091	ENSVURG00010011098	TTLL2 (ENSVURG00010011107)	ENSVURG00010011116	GPR31 (ENSVURG00010011126)	CCR6 (ENSVURG00010011134) #16	CEP43 (ENSVURG00010011140) #17	RNASET2 (ENSVURG00010011146) #18	RPS6KA2 (ENSVURG00010011160) #19	ENSVURG00010011176 #20	SFT2D1 (ENSVURG00010011185) #21	ENSVURG00010011194	TBXT (ENSVURG00010011203) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000016849	ENSSHAG00000016621	ENSSHAG00000016365	ENSSHAG00000014075	ENSSHAG00000013706	ENSSHAG00000013448	ENSSHAG00000013247	ENSSHAG00000021292	CCR6 (ENSSHAG00000012662) #16	CEP43 (ENSSHAG00000011825) #17	RNASET2 (ENSSHAG00000011073) #18	RPS6KA2 (ENSSHAG00000006398) #19	ENSSHAG00000022097 #20	SFT2D1 (ENSSHAG00000027257) #21	ENSSHAG00000025239	TBXT (ENSSHAG00000018904) #22	ENSSHAG00000024973	PDE10A (ENSSHAG00000018469) #24	ENSSHAG00000018375 #25	QKI (ENSSHAG00000028391) #26	PACRG (ENSSHAG00000024668) #27	AGPAT4 (ENSSHAG00000005957) #29	ENSSHAG00000029251 #28	ENSSHAG00000025577 #28	ENSSHAG00000004375 #30	ENSSHAG00000021967	ENSSHAG00000000112 #31	SLC22A3 (ENSSHAG00000016633) #32	SLC22A2 (ENSSHAG00000016344) #33	SLC22A1 (ENSSHAG00000016135) #34	IGF2R (ENSSHAG00000015828) #35
Opossum	MODERN SPECIES	1	ENSMODG00000005865	ENSMODG00000037854	ENSMODG00000040141	AFDN (ENSMODG00000006062)	UNC93A (ENSMODG00000025690)	TTLL2 (ENSMODG00000006111)	ENSMODG00000029483	GPR31 (ENSMODG00000006120)	CCR6 (ENSMODG00000037007) #16	ENSMODG00000006175 #17	RNASET2 (ENSMODG00000006193) #18	ENSMODG00000006251	RPS6KA2 (ENSMODG00000006241) #19	ENSMODG00000023271 #20	SFT2D1 (ENSMODG00000025689) #21	TBXT (ENSMODG00000006318) #22	ENSMODG00000006322	PDE10A (ENSMODG00000006355) #24	ENSMODG00000006367 #25	QKI (ENSMODG00000006434) #26	ENSMODG00000049428 #27	ENSMODG00000023273 #27	ENSMODG00000040616 #27	ENSMODG00000047373	ENSMODG00000043631	ENSMODG00000023274	ENSMODG00000006493	ENSMODG00000029680 #28	ENSMODG00000027665 #28	AGPAT4 (ENSMODG00000006531) #29	MAP3K4 (ENSMODG00000006594) #30
Platypus	MODERN SPECIES	13	ENSOANG00000039135	PIGQ (ENSOANG00000013502)	RAB40C (ENSOANG00000037942)	WFIKKN1 (ENSOANG00000045373)	METTL26 (ENSOANG00000038081)	ENSOANG00000037867	WDR90 (ENSOANG00000013799)	RHOT2 (ENSOANG00000001829)	RHBDL1 (ENSOANG00000012430)	ENSOANG00000042385	STUB1 (ENSOANG00000044262)	WDR24 (ENSOANG00000040783)	FBXL16 (ENSOANG00000010215)	ENSOANG00000005204	ENSOANG00000038151	TBXT (ENSOANG00000012289) #22	PDE10A (ENSOANG00000004294) #24	FNDC1 (ENSOANG00000036638)	AFDN (ENSOANG00000005867)	UNC93A (ENSOANG00000005868)	CCR6 (ENSOANG00000036707) #16	ENSOANG00000046758	BMPER (ENSOANG00000005869)	BBS9 (ENSOANG00000004157)	NT5C3A (ENSOANG00000004156)	FKBP9 (ENSOANG00000004155)	ENSOANG00000045575	ENSOANG00000045868	ENSOANG00000043900	KBTBD2 (ENSOANG00000044556)	AVL9 (ENSOANG00000050697)
Sauria	ANCESTRAL SPECIES	1	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000162065 #34	ENSGT00940000155089.h #33	ENSGT00390000013943 #35
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
tuatara	MODERN SPECIES	534												RPS6KA1 (ENSSPUG00000018375)	PIGV (ENSSPUG00000018350)	ZDHHC18 (ENSSPUG00000018344)	SFN (ENSSPUG00000018339)	ENSSPUG00000018318 #22	GPN2 (ENSSPUG00000018304)	GPATCH3 (ENSSPUG00000018299)	NR0B2 (ENSSPUG00000018292)	ENSSPUG00000018283	ENSSPUG00000018275	KDF1 (ENSSPUG00000018266)	ENSSPUG00000018259	TENT5B (ENSSPUG00000018249)
Episquamata	ANCESTRAL SPECIES		ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00960000189534	ENSGT00940000168209	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a.c.a.a #36
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a.d #36
Elapidae	ANCESTRAL SPECIES		ENSGT00940000165210.a.b.b.a	ENSGT00940000165210.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208.r #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a.d #36
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000165210.a.b.b.a	ENSGT00940000165210.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208.r #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a.d #36
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000165210.a.b.b.a	ENSGT00940000165210.b	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000186343	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208.r #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a.d #36
Eastern brown snake	MODERN SPECIES	26	ENSPTXG00000008556	DACT2 (ENSPTXG00000008554)	FRMD1 (ENSPTXG00000008553)	KIF25 (ENSPTXG00000008552)	AFDN (ENSPTXG00000008551)	UNC93A (ENSPTXG00000008548)	TTLL2 (ENSPTXG00000008547)	ENSPTXG00000008546	ENSPTXG00000008545	CEP43 (ENSPTXG00000008544) #17	RNASET2 (ENSPTXG00000008543) #18	RPS6KA2 (ENSPTXG00000008542) #19	MPC1 (ENSPTXG00000008541) #20	SFT2D1 (ENSPTXG00000008540) #21	PRR18 (ENSPTXG00000008539)	TBXT (ENSPTXG00000008538) #22	PDE10A (ENSPTXG00000008485) #24	C6orf118 (ENSPTXG00000008484) #25	QKI (ENSPTXG00000008483) #26	PACRG (ENSPTXG00000008482) #27	ENSPTXG00000008481	PRKN (ENSPTXG00000008480) #28	AGPAT4 (ENSPTXG00000008479) #29	ENSPTXG00000008478	MAP3K4 (ENSPTXG00000007968) #30	ENSPTXG00000007960 #31	SLC22A3 (ENSPTXG00000007958) #32	ENSPTXG00000007957 #33	ENSPTXG00000007955 #33	IGF2R (ENSPTXG00000001694) #35	ENSPTXG00000001528 #36
Mainland tiger snake	MODERN SPECIES	70			ENSNSUG00000014031	ENSNSUG00000014032	DACT2 (ENSNSUG00000014033)	FRMD1 (ENSNSUG00000014035)	KIF25 (ENSNSUG00000014036)	AFDN (ENSNSUG00000014037)	UNC93A (ENSNSUG00000014930)	TTLL2 (ENSNSUG00000014933)	CEP43 (ENSNSUG00000014936) #17	RNASET2 (ENSNSUG00000014993) #18	RPS6KA2 (ENSNSUG00000014994) #19	MPC1 (ENSNSUG00000014995) #20	SFT2D1 (ENSNSUG00000014996) #21	TBXT (ENSNSUG00000014997) #22	PDE10A (ENSNSUG00000014998) #24	C6orf118 (ENSNSUG00000015018) #25	QKI (ENSNSUG00000015021) #26	ENSNSUG00000015022 #27	PACRG (ENSNSUG00000015023) #27	ENSNSUG00000015024	PRKN (ENSNSUG00000015025) #28	ENSNSUG00000015026	ENSNSUG00000015027	AGPAT4 (ENSNSUG00000015028) #29	MAP3K4 (ENSNSUG00000015033) #30	ENSNSUG00000015519	ENSNSUG00000015529 #31	SLC22A3 (ENSNSUG00000015711) #32	ENSNSUG00000015712 #33
Blue-lipped sea krait	MODERN SPECIES	10536																TBXT (ENSLLTG00000016659) #22
Indian cobra	MODERN SPECIES		ENSNNAG00000008509	DACT2 (ENSNNAG00000008534)	ENSNNAG00000008556	ENSNNAG00000008575	KIF25 (ENSNNAG00000008631)	AFDN (ENSNNAG00000008706)	UNC93A (ENSNNAG00000008992)	TTLL2 (ENSNNAG00000009020)	ENSNNAG00000009035	CEP43 (ENSNNAG00000009119) #17	RNASET2 (ENSNNAG00000009189) #18	RPS6KA2 (ENSNNAG00000009365) #19	MPC1 (ENSNNAG00000012739) #20	SFT2D1 (ENSNNAG00000012757) #21	PRR18 (ENSNNAG00000012767)	TBXT (ENSNNAG00000012781) #22	PDE10A (ENSNNAG00000012894) #24	ENSNNAG00000013280	C6orf118 (ENSNNAG00000013295) #25	QKI (ENSNNAG00000013315) #26	PACRG (ENSNNAG00000013371) #27	ENSNNAG00000013395	PRKN (ENSNNAG00000013405) #28	AGPAT4 (ENSNNAG00000013435) #29	MAP3K4 (ENSNNAG00000013454) #30	ENSNNAG00000013607	ENSNNAG00000013630 #31	ENSNNAG00000013701 #31	ENSNNAG00000013719 #31	SLC22A3 (ENSNNAG00000013742) #32	ENSNNAG00000013839 #33
Lizard	MODERN SPECIES	1073																TBXT (ENSACAG00000003467) #22	ENSACAG00000039266	ENSACAG00000038934	ENSACAG00000039769	PDE10A (ENSACAG00000003277) #24	C6orf118 (ENSACAG00000003258) #25
Laterata	ANCESTRAL SPECIES	4	ENSGT00950000183181.A.a	ENSGT00940000167703	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00960000189534	ENSGT00940000168209	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a.c.a.a #36	ENSGT00940000153167.A.a #37
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000004992	ENSPMRG00000004988	AFDN (ENSPMRG00000004970)	UNC93A (ENSPMRG00000004964)	TTLL2 (ENSPMRG00000004959)	ENSPMRG00000004951	ENSPMRG00000004945	CCR6 (ENSPMRG00000004939) #16	CEP43 (ENSPMRG00000004931) #17	RNASET2 (ENSPMRG00000004913) #18	RPS6KA2 (ENSPMRG00000002868) #19	MPC1 (ENSPMRG00000002351) #20	SFT2D1 (ENSPMRG00000002343) #21	PRR18 (ENSPMRG00000002338)	ENSPMRG00000002328	TBXT (ENSPMRG00000002319) #22	PDE10A (ENSPMRG00000002283) #24	C6orf118 (ENSPMRG00000002274) #25	QKI (ENSPMRG00000002260) #26	PACRG (ENSPMRG00000002251) #27	ENSPMRG00000002245	PRKN (ENSPMRG00000002228) #28	AGPAT4 (ENSPMRG00000002221) #29	ENSPMRG00000002214	MAP3K4 (ENSPMRG00000002197) #30	ENSPMRG00000002175 #31	SLC22A3 (ENSPMRG00000002162) #32	ENSPMRG00000002157 #33	ENSPMRG00000002151 #33	IGF2R (ENSPMRG00000001320) #35	ENSPMRG00000000891 #36
Argentine black and white tegu	MODERN SPECIES	2	ENSSMRG00000022163	AFDN (ENSSMRG00000022167)	ENSSMRG00000022168	UNC93A (ENSSMRG00000022169)	ENSSMRG00000022170	ENSSMRG00000022171	ENSSMRG00000022172	ENSSMRG00000022173	CCR6 (ENSSMRG00000022174) #16	CEP43 (ENSSMRG00000022175) #17	RNASET2 (ENSSMRG00000022176) #18	RPS6KA2 (ENSSMRG00000022178) #19	MPC1 (ENSSMRG00000022180) #20	SFT2D1 (ENSSMRG00000022182) #21	PRR18 (ENSSMRG00000022183)	TBXT (ENSSMRG00000022186) #22	PDE10A (ENSSMRG00000022188) #24	C6orf118 (ENSSMRG00000022189) #25	ENSSMRG00000022193	ENSSMRG00000022194	QKI (ENSSMRG00000022196) #26	PACRG (ENSSMRG00000022198) #27	ENSSMRG00000022199	PRKN (ENSSMRG00000022201) #28	AGPAT4 (ENSSMRG00000022202) #29	MAP3K4 (ENSSMRG00000022204) #30	ENSSMRG00000022205 #31	SLC22A3 (ENSSMRG00000022213) #32	ENSSMRG00000022214 #33	ENSSMRG00000022215 #33	IGF2R (ENSSMRG00000022216) #35
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000168209	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000168209	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT01030000234985	ENSGT00940000155208.v #31	ENSGT00940000155208.u.b #31	ENSGT00940000155208.u.a #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000162065 #34	ENSGT00940000155089.h #33
Aves	ANCESTRAL SPECIES	12	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.v #31	ENSGT00940000155208.u.b #31	ENSGT00940000155208.u.a #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000162065 #34	ENSGT00940000155089.h #33	ENSGT00390000013943 #35
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.b #31	ENSGT00940000155208.u.b.a.a.a #31	ENSGT00940000155208.u.a #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000162065 #34	ENSGT00940000155089.h #33	ENSGT00390000013943 #35
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000165210.a.b	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.a.a.a #31	ENSGT00940000155208.u.a #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Anatidae	ANCESTRAL SPECIES		ENSGT00940000165210.a.b	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00960000192593	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.a.a.b #31	ENSGT00940000155208.u.b.b #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Duck	MODERN SPECIES	21	ENSAPLG00000010314	ENSAPLG00000015969	ENSAPLG00000015983	DACT2 (ENSAPLG00000016135)	ENSAPLG00000016171	KIF25 (ENSAPLG00000016274)	AFDN (ENSAPLG00000002298)	UNC93A (ENSAPLG00000002434)	TTLL2 (ENSAPLG00000001705)	CCR6 (ENSAPLG00000010486) #16	CEP43 (ENSAPLG00000010607) #17	RNASET2 (ENSAPLG00000010821) #18	RPS6KA2 (ENSAPLG00000011253) #19	MPC1 (ENSAPLG00000017567) #20	SFT2D1 (ENSAPLG00000012881) #21	TBXT (ENSAPLG00000018385) #22	PDE10A (ENSAPLG00000009479) #24	C6orf118 (ENSAPLG00000010023) #25	ENSAPLG00000026502	ENSAPLG00000028615	QKI (ENSAPLG00000010080) #26	PACRG (ENSAPLG00000010267) #27	PRKN (ENSAPLG00000012643) #28	AGPAT4 (ENSAPLG00000012386) #29	MAP3K4 (ENSAPLG00000011460) #30	ENSAPLG00000025814	ENSAPLG00000010099 #31	SLC22A3 (ENSAPLG00000009972) #32	ENSAPLG00000008773 #33	ENSAPLG00000007770 #33	IGF2R (ENSAPLG00000007173) #35
Pink-footed goose	MODERN SPECIES	104									CCR6 (ENSABRG00000009287) #16	CEP43 (ENSABRG00000009268) #17	RNASET2 (ENSABRG00000009247) #18	RPS6KA2 (ENSABRG00000009159) #19	MPC1 (ENSABRG00000009105) #20	SFT2D1 (ENSABRG00000009073) #21	PRR18 (ENSABRG00000009063)	TBXT (ENSABRG00000009042) #22	PDE10A (ENSABRG00000008928) #24	C6orf118 (ENSABRG00000008906) #25	ENSABRG00000008844	QKI (ENSABRG00000008649) #26	PACRG (ENSABRG00000008637) #27	PRKN (ENSABRG00000008607) #28	AGPAT4 (ENSABRG00000008585) #29	MAP3K4 (ENSABRG00000008512) #30	ENSABRG00000008494 #31	ENSABRG00000008490 #31
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000155517	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.a.a.a #31	ENSGT00940000155208.u.a #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Japanese quail	MODERN SPECIES	21	DACT2 (ENSCJPG00005003968)	ENSCJPG00005003972	KIF25 (ENSCJPG00005003978)	AFDN (ENSCJPG00005003980)	UNC93A (ENSCJPG00005003999)	TTLL2 (ENSCJPG00005004004)	ENSCJPG00005004005	CCR6 (ENSCJPG00005004006) #16	CEP43 (ENSCJPG00005004007) #17	RNASET2 (ENSCJPG00005004012) #18	ENSCJPG00005004017	RPS6KA2 (ENSCJPG00005004020) #19	MPC1 (ENSCJPG00005004032) #20	SFT2D1 (ENSCJPG00005004038) #21	ENSCJPG00005004044	TBXT (ENSCJPG00005004058) #22	PDE10A (ENSCJPG00005004075) #24	ENSCJPG00005004387 #26	PACRG (ENSCJPG00005004398) #27	PRKN (ENSCJPG00005004407) #28	AGPAT4 (ENSCJPG00005004426) #29	MAP3K4 (ENSCJPG00005004431) #30	ENSCJPG00005004435 #31	ENSCJPG00005004448 #31	SLC22A3 (ENSCJPG00005004486) #32	ENSCJPG00005004522 #33	ENSCJPG00005004536 #33	IGF2R (ENSCJPG00005004540) #35	MAS1 (ENSCJPG00005005311) #36	PNLDC1 (ENSCJPG00005005315) #37	MRPL18 (ENSCJPG00005005329)
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000165210.a.b	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.b #31	ENSGT00940000155208.u.b.a.a.a #31	ENSGT00940000155208.u.a #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Chicken	MODERN SPECIES	22	SULT6B1L (ENSGALG00010006570)	SULT (ENSGALG00010006606)	DACT2 (ENSGALG00010006621)	FRMD1 (ENSGALG00010004907)	KIF25 (ENSGALG00010004927)	AFDN (ENSGALG00010004951)	TTLL2 (ENSGALG00010004846)	ENSGALG00010004876	CCR6 (ENSGALG00010006499) #16	FGFR1OP (ENSGALG00010006486) #17	RNASET2 (ENSGALG00010005789) #18	RPS6KA2 (ENSGALG00010005839) #19	MPC1L (ENSGALG00010005861) #20	SFT2D1 (ENSGALG00010005893) #21	PRR18 (ENSGALG00010005903)	TBXT (ENSGALG00010005911) #22	PDE10A (ENSGALG00010005999) #24	QKI (ENSGALG00010006041) #26	PACRG (ENSGALG00010006068) #27	PRKN (ENSGALG00010006183) #28	AGPAT4 (ENSGALG00010006227) #29	MAP3K4 (ENSGALG00010006260) #30	ENSGALG00010006269 #31	PLG (ENSGALG00010007226) #31	SLC22A3 (ENSGALG00010006293) #32	ENSGALG00010006318 #33	ENSGALG00010006339 #33	IGF2R (ENSGALG00010006351) #35	MAS1 (ENSGALG00010006448) #36	PNLDC1 (ENSGALG00010004390) #37	MRPL18 (ENSGALG00010004424)
Turkey	MODERN SPECIES	11	SMOC2 (ENSMGAG00000012250)	ENSMGAG00000012256	DACT2 (ENSMGAG00000012264)	ENSMGAG00000012266	KIF25 (ENSMGAG00000012274)	AFDN (ENSMGAG00000012282)	ENSMGAG00000012812	ENSMGAG00000012817	ENSMGAG00000017645	CCR6 (ENSMGAG00000015842) #16	CEP43 (ENSMGAG00000012298) #17	RNASET2 (ENSMGAG00000012305) #18	RPS6KA2 (ENSMGAG00000012309) #19	MPC1 (ENSMGAG00000012326) #20	SFT2D1 (ENSMGAG00000021326) #21	TBXT (ENSMGAG00000012328) #22	ENSMGAG00000022277	ENSMGAG00000021210 #28	ENSMGAG00000022941	ENSMGAG00000018125 #27	ENSMGAG00000016769 #28	AGPAT4 (ENSMGAG00000012346) #29	MAP3K4 (ENSMGAG00000012360) #30	ENSMGAG00000022747 #31	ENSMGAG00000012373 #31	SLC22A3 (ENSMGAG00000012396) #32	ENSMGAG00000012409 #33	ENSMGAG00000012426 #33	IGF2R (ENSMGAG00000012441) #35	MAS1 (ENSMGAG00000015847) #36	PNLDC1 (ENSMGAG00000012470) #37
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00990000212037	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.b #31	ENSGT00940000155208.u.b.a.b #31	ENSGT00940000155208.u.a #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000162065 #34	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000165210.a.b	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00990000212037	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.b #31	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000155636	ENSGT00940000157048	ENSGT00940000153408.A	ENSGT00950000183100.B	ENSGT00940000153766.A	ENSGT00390000003256
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00390000018436.a.b	ENSGT00940000165210.a.b	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.b #31	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000155636	ENSGT00940000157048	ENSGT00940000153408.A	ENSGT00950000183100.B	ENSGT00940000153766.A	ENSGT00390000003256
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00390000018436.a.b	ENSGT00940000165210.a.b	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.b #31	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000155636	ENSGT00940000157048	ENSGT00940000153408.A	ENSGT00950000183100.B	ENSGT00940000153766.A	ENSGT00390000003256
Medium ground finch	MODERN SPECIES	2	ENSGFOG00000002332	ENSGFOG00000002306	ENSGFOG00000002285	DACT2 (ENSGFOG00000002239)	FRMD1 (ENSGFOG00000002193)	KIF25 (ENSGFOG00000002173)	AFDN (ENSGFOG00000002033)	UNC93A (ENSGFOG00000001997)	ENSGFOG00000001983	CCR6 (ENSGFOG00000001979) #16	CEP43 (ENSGFOG00000001972) #17	RNASET2 (ENSGFOG00000001966) #18	RPS6KA2 (ENSGFOG00000001944) #19	MPC1 (ENSGFOG00000001931) #20	SFT2D1 (ENSGFOG00000001923) #21	TBXT (ENSGFOG00000001906) #22	PDE10A (ENSGFOG00000001765) #24	QKI (ENSGFOG00000001715) #26	PACRG (ENSGFOG00000001701) #27	PRKN (ENSGFOG00000001685) #28	AGPAT4 (ENSGFOG00000001673) #29	MAP3K4 (ENSGFOG00000001636) #30	ENSGFOG00000001616 #31	ENSGFOG00000001595	GTPBP2 (ENSGFOG00000001562)	POLH (ENSGFOG00000001545)	XPO5 (ENSGFOG00000001501)	POLR1C (ENSGFOG00000001471)	YIPF3 (ENSGFOG00000001426)	LRRC73 (ENSGFOG00000001411)	ENSGFOG00000001396
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00940000165210.a.b	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.b #31	ENSGT00390000002210.c.a	ENSGT00390000003812	ENSGT00940000155636	ENSGT00940000157048	ENSGT00940000153408.A	ENSGT00950000183100.B	ENSGT00940000153766.A	ENSGT00390000003256
Zebra finch	MODERN SPECIES	23	ENSTGUG00000009675	ENSTGUG00000009671	DACT2 (ENSTGUG00000026616)	ENSTGUG00000018926	ENSTGUG00000009646	KIF25 (ENSTGUG00000009635)	AFDN (ENSTGUG00000009578)	UNC93A (ENSTGUG00000009567)	ENSTGUG00000023539	CCR6 (ENSTGUG00000009563) #16	CEP43 (ENSTGUG00000009547) #17	RNASET2 (ENSTGUG00000027712) #18	RPS6KA2 (ENSTGUG00000009488) #19	MPC1 (ENSTGUG00000009482) #20	SFT2D1 (ENSTGUG00000009460) #21	TBXT (ENSTGUG00000009448) #22	PDE10A (ENSTGUG00000009390) #24	QKI (ENSTGUG00000009383) #26	PACRG (ENSTGUG00000009376) #27	PRKN (ENSTGUG00000009367) #28	MAP3K4 (ENSTGUG00000009273) #30	ENSTGUG00000015327	ENSTGUG00000014203	SCCPDH (ENSTGUG00000008414)	ENSTGUG00000008437	ENSTGUG00000022144	SRD5A2 (ENSTGUG00000008454)	MEMO1 (ENSTGUG00000022722)	DPY30 (ENSTGUG00000008482)	SPAST (ENSTGUG00000008494)	ENSTGUG00000027929
Common canary	MODERN SPECIES	1	ENSSCAG00000010693	SLC4A1AP (ENSSCAG00000010745)	SUPT7L (ENSSCAG00000010777)	ENSSCAG00000010782	LRFN2 (ENSSCAG00000010789)	MOCS1 (ENSSCAG00000010805)	DAAM2 (ENSSCAG00000010821)	KIF6 (ENSSCAG00000010863)	KCNK16 (ENSSCAG00000010883)	KCNK17 (ENSSCAG00000010889)	KCNK5 (ENSSCAG00000010899)	RNASET2 (ENSSCAG00000010909) #18	RPS6KA2 (ENSSCAG00000010979) #19	MPC1 (ENSSCAG00000011139) #20	SFT2D1 (ENSSCAG00000011142) #21	TBXT (ENSSCAG00000011145) #22	PRKN (ENSSCAG00000011159) #28	AGPAT4 (ENSSCAG00000011164) #29	MAP3K4 (ENSSCAG00000011173) #30	ENSSCAG00000011197 #31	ENSSCAG00000011226	MAD2L1BP (ENSSCAG00000011236)	GTPBP2 (ENSSCAG00000011243)	POLH (ENSSCAG00000011258)	XPO5 (ENSSCAG00000011278)	POLR1C (ENSSCAG00000011320)	YIPF3 (ENSSCAG00000011383)	LRRC73 (ENSSCAG00000011465)	ENSSCAG00000011471	DLK2 (ENSSCAG00000011474)	ENSSCAG00000011480
Flycatcher	MODERN SPECIES	21	THBS2 (ENSFALG00000003079)	SMOC2 (ENSFALG00000003061)	ENSFALG00000003039	DACT2 (ENSFALG00000012374)	ENSFALG00000024562	KIF25 (ENSFALG00000012354)	AFDN (ENSFALG00000012348)	ENSFALG00000012339	CCR6 (ENSFALG00000012331) #16	CEP43 (ENSFALG00000012317) #17	RNASET2 (ENSFALG00000012299) #18	ENSFALG00000026823	RPS6KA2 (ENSFALG00000012267) #19	MPC1 (ENSFALG00000029027) #20	SFT2D1 (ENSFALG00000012238) #21	TBXT (ENSFALG00000012218) #22	PDE10A (ENSFALG00000012196) #24	QKI (ENSFALG00000012183) #26	PACRG (ENSFALG00000028276) #27	PRKN (ENSFALG00000012173) #28	AGPAT4 (ENSFALG00000012170) #29	MAP3K4 (ENSFALG00000012168) #30	ENSFALG00000012162 #31	MAD2L1BP (ENSFALG00000012156)	GTPBP2 (ENSFALG00000012153)	POLH (ENSFALG00000012144)	XPO5 (ENSFALG00000012130)	POLR1C (ENSFALG00000012111)	YIPF3 (ENSFALG00000012092)	LRRC73 (ENSFALG00000012083)	ENSFALG00000012158
Great tit	MODERN SPECIES	22	ENSPMJG00000001821	ENSPMJG00000001815	DACT2 (ENSPMJG00000001809)	ENSPMJG00000001768	ENSPMJG00000001762	AFDN (ENSPMJG00000001693)	UNC93A (ENSPMJG00000001629)	ENSPMJG00000001619	CCR6 (ENSPMJG00000001598) #16	CEP43 (ENSPMJG00000001586) #17	RNASET2 (ENSPMJG00000001581) #18	ENSPMJG00000001578	RPS6KA2 (ENSPMJG00000001558) #19	MPC1 (ENSPMJG00000001484) #20	SFT2D1 (ENSPMJG00000001481) #21	TBXT (ENSPMJG00000001409) #22	PDE10A (ENSPMJG00000001349) #24	QKI (ENSPMJG00000001265) #26	PACRG (ENSPMJG00000001232) #27	PRKN (ENSPMJG00000001036) #28	AGPAT4 (ENSPMJG00000000867) #29	MAP3K4 (ENSPMJG00000000617) #30	ENSPMJG00000000606 #31	ENSPMJG00000000596 #31	ENSPMJG00000000582	MAD2L1BP (ENSPMJG00000000572)	GTPBP2 (ENSPMJG00000000553)	POLH (ENSPMJG00000000538)	XPO5 (ENSPMJG00000000397)	POLR1C (ENSPMJG00000000376)	YIPF3 (ENSPMJG00000000350)
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000165210.a.a	ENSGT00950000183181.A.a	ENSGT00940000167703	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00530000063927.a.a	ENSGT00960000189534	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00990000212037	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.u.b.b #31	ENSGT00940000155208.u.b.a.b #31	ENSGT00940000155208.u.a #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT01030000234639.A.a #36	ENSGT00940000153167.A.a #37
Golden eagle	MODERN SPECIES	24	ENSACCG00020000974	ENSACCG00020000995	SDR39U1 (ENSACCG00020001021)	ENSACCG00020001042	ENSACCG00020001052	ENSACCG00020001063	ENSACCG00020001075	ENSACCG00020001090	CCR6 (ENSACCG00020001101) #16	CEP43 (ENSACCG00020001119) #17	RNASET2 (ENSACCG00020001160) #18	ENSACCG00020001176	RPS6KA2 (ENSACCG00020001205) #19	MPC1 (ENSACCG00020001249) #20	SFT2D1 (ENSACCG00020001265) #21	TBXT (ENSACCG00020001297) #22	PDE10A (ENSACCG00020001331) #24	QKI (ENSACCG00020001360) #26	PACRG (ENSACCG00020001381) #27	PRKN (ENSACCG00020001423) #28	AGPAT4 (ENSACCG00020001461) #29	MAP3K4 (ENSACCG00020001556) #30	ENSACCG00020001718 #31	SLC22A3 (ENSACCG00020001790) #32	ENSACCG00020001825 #33	ENSACCG00020001849 #33	IGF2R (ENSACCG00020003984) #35	MAS1 (ENSACCG00020004937) #36	PNLDC1 (ENSACCG00020004951) #37	MRPL18 (ENSACCG00020004966)	TCP1 (ENSACCG00020004976)
Kakapo	MODERN SPECIES	2	ENSSHBG00005020844	DACT2 (ENSSHBG00005020841)	ENSSHBG00005020830	KIF25 (ENSSHBG00005020817)	AFDN (ENSSHBG00005020703)	UNC93A (ENSSHBG00005020596)	ENSSHBG00005020595	ENSSHBG00005020591	CCR6 (ENSSHBG00005020586) #16	CEP43 (ENSSHBG00005020582) #17	RNASET2 (ENSSHBG00005020575) #18	RPS6KA2 (ENSSHBG00005020566) #19	MPC1 (ENSSHBG00005020562) #20	SFT2D1 (ENSSHBG00005020559) #21	PRR18 (ENSSHBG00005020555)	TBXT (ENSSHBG00005020548) #22	PDE10A (ENSSHBG00005020493) #24	QKI (ENSSHBG00005020433) #26	PACRG (ENSSHBG00005020428) #27	PRKN (ENSSHBG00005020412) #28	AGPAT4 (ENSSHBG00005020401) #29	ENSSHBG00005020341 #31	ENSSHBG00005020337 #31	ENSSHBG00005020334 #31	ENSSHBG00005020135 #31	SLC22A3 (ENSSHBG00005020081) #32	SLC22A2 (ENSSHBG00005020076) #33	IGF2R (ENSSHBG00005013283) #35	MAS1 (ENSSHBG00005011587) #36	PNLDC1 (ENSSHBG00005011555) #37	MRPL18 (ENSSHBG00005011525)
African ostrich	MODERN SPECIES	188	TARBP1 (ENSSCUG00000000505)	TOMM20 (ENSSCUG00000000546)	RBM34 (ENSSCUG00000000551)	ARID4B (ENSSCUG00000000590)	GGPS1 (ENSSCUG00000000626)	TBCE (ENSSCUG00000000653)	B3GALNT2 (ENSSCUG00000000694)	GNG4 (ENSSCUG00000000697)	LYST (ENSSCUG00000000828)	CCR6 (ENSSCUG00000001009) #16	CEP43 (ENSSCUG00000001013) #17	RNASET2 (ENSSCUG00000001018) #18	RPS6KA2 (ENSSCUG00000001026) #19	MPC1 (ENSSCUG00000001035) #20	SFT2D1 (ENSSCUG00000001038) #21	TBXT (ENSSCUG00000001044) #22	PDE10A (ENSSCUG00000001053) #24	QKI (ENSSCUG00000001069) #26
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	58	ENSCPRG00005004265	ZNF593 (ENSCPRG00005004261)	CNKSR1 (ENSCPRG00005004249)	CEP85 (ENSCPRG00005004237)	SH3BGRL3 (ENSCPRG00005004225)	UBXN11 (ENSCPRG00005004218)	CRYBG2 (ENSCPRG00005004199)	LIN28A (ENSCPRG00005004195)	DHDDS (ENSCPRG00005004188)	ENSCPRG00005004185	RPS6KA1 (ENSCPRG00005004179)	ENSCPRG00005003630	PIGV (ENSCPRG00005003573)	ZDHHC18 (ENSCPRG00005003565)	SFN (ENSCPRG00005003552)	ENSCPRG00005003521 #22	GPN2 (ENSCPRG00005003511)	GPATCH3 (ENSCPRG00005003479)	NR0B2 (ENSCPRG00005003471)	NUDC (ENSCPRG00005003451)	KDF1 (ENSCPRG00005003440)	TENT5B (ENSCPRG00005003432)	SLC9A1 (ENSCPRG00005003430)	WDTC1 (ENSCPRG00005003421)	TMEM222 (ENSCPRG00005003410)	ENSCPRG00005003408	SYTL1 (ENSCPRG00005003362)	MAP3K6 (ENSCPRG00005003286)	CD164L2 (ENSCPRG00005003266)	GPR3 (ENSCPRG00005003261)	WASF2 (ENSCPRG00005003258)
Australian saltwater crocodile	MODERN SPECIES	60	DACT2 (ENSCPRG00005017431)	ENSCPRG00005017434	KIF25 (ENSCPRG00005017436)	AFDN (ENSCPRG00005017449)	UNC93A (ENSCPRG00005017469)	TTLL2 (ENSCPRG00005017471)	ENSCPRG00005017477	GPR31 (ENSCPRG00005017480)	ENSCPRG00005017482	CCR6 (ENSCPRG00005017488) #16	CEP43 (ENSCPRG00005017492) #17	RNASET2 (ENSCPRG00005017504) #18	RPS6KA2 (ENSCPRG00005017518) #19	MPC1 (ENSCPRG00005017538) #20	SFT2D1 (ENSCPRG00005017544) #21	TBXT (ENSCPRG00005017551) #22	PDE10A (ENSCPRG00005017562) #24	C6orf118 (ENSCPRG00005017566) #25	QKI (ENSCPRG00005017579) #26	PACRG (ENSCPRG00005017592) #27	ENSCPRG00005017599 #28	ENSCPRG00005017605 #28	ENSCPRG00005017613 #28	AGPAT4 (ENSCPRG00005017619) #29	ENSCPRG00005017627	MAP3K4 (ENSCPRG00005017632) #30	ENSCPRG00005017655	ENSCPRG00005017657 #31	ENSCPRG00005017662 #31	ENSCPRG00005017664 #31	SLC22A3 (ENSCPRG00005017674) #32
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000162787	ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000168209	ENSGT01030000234667.b #16	ENSGT00390000007441 #17	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Chinese turtle	MODERN SPECIES	2239																TBXT (ENSPSIG00000005649) #22	ENSPSIG00000000317	PDE10A (ENSPSIG00000006427) #24	C6orf118 (ENSPSIG00000007739) #25
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000168209	ENSGT01030000234667.b.b #16	ENSGT00390000007441 #17	ENSGT01030000234667.b.a #16	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208.s #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00390000006975.b	ENSGT00620000087993.a.b	ENSGT00940000157260	ENSGT00520000055567.b	ENSGT00940000157740	ENSGT00960000189661	ENSGT00940000154798.b	ENSGT00940000153295.a	ENSGT00390000007879	ENSGT00950000182802.B	ENSGT00940000159314	ENSGT00940000155194	ENSGT00390000013174	ENSGT00940000156585	ENSGT01090000260040.b.b.b.a	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT01030000234985	ENSGT00880000138034 #30	ENSGT00940000155208.s #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT00940000153167.A.a #37	ENSGT00390000006394
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	12	ENSGEVG00005021236	CEP85 (ENSGEVG00005021237)	SH3BGRL3 (ENSGEVG00005021239)	UBXN11 (ENSGEVG00005021240)	CRYBG2 (ENSGEVG00005021242)	ENSGEVG00005021243	ENSGEVG00005021245	LIN28A (ENSGEVG00005021246)	DHDDS (ENSGEVG00005021247)	ENSGEVG00005021248	ENSGEVG00005021249	RPS6KA1 (ENSGEVG00005021250)	ARID1A (ENSGEVG00005021251)	PIGV (ENSGEVG00005021252)	ZDHHC18 (ENSGEVG00005021254)	ENSGEVG00005021255 #22	GPN2 (ENSGEVG00005021256)	GPATCH3 (ENSGEVG00005021257)	NR0B2 (ENSGEVG00005021258)	NUDC (ENSGEVG00005021259)	KDF1 (ENSGEVG00005021260)	TRNP1 (ENSGEVG00005021261)	TENT5B (ENSGEVG00005021262)	SLC9A1 (ENSGEVG00005021263)	WDTC1 (ENSGEVG00005021264)	TMEM222 (ENSGEVG00005021265)	ENSGEVG00005004298	SYTL1 (ENSGEVG00005004336)	MAP3K6 (ENSGEVG00005004395)	ENSGEVG00005004509	CD164L2 (ENSGEVG00005004553)
Goode s thornscrub tortoise	MODERN SPECIES	17	FRMD1 (ENSGEVG00005011554)	KIF25 (ENSGEVG00005011433)	AFDN (ENSGEVG00005011377)	UNC93A (ENSGEVG00005011351)	TTLL2 (ENSGEVG00005011340)	ENSGEVG00005010956	GPR31 (ENSGEVG00005010901)	ENSGEVG00005010882 #16	CEP43 (ENSGEVG00005010775) #17	ENSGEVG00005010659 #16	RNASET2 (ENSGEVG00005010632) #18	RPS6KA2 (ENSGEVG00005010253) #19	MPC1 (ENSGEVG00005010196) #20	SFT2D1 (ENSGEVG00005010173) #21	PRR18 (ENSGEVG00005010158)	TBXT (ENSGEVG00005009997) #22	PDE10A (ENSGEVG00005009372) #24	C6orf118 (ENSGEVG00005009120) #25	QKI (ENSGEVG00005009095) #26	PACRG (ENSGEVG00005009052) #27	PRKN (ENSGEVG00005009001) #28	ENSGEVG00005020970 #28	AGPAT4 (ENSGEVG00005020966) #29	ENSGEVG00005020964	MAP3K4 (ENSGEVG00005020957) #30	ENSGEVG00005020936 #31	ENSGEVG00005020932 #32	ENSGEVG00005020929 #32	ENSGEVG00005020924 #33	ENSGEVG00005020912 #33	IGF2R (ENSGEVG00005020730) #35
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2225	ENSCABG00000010580	ENSCABG00000010576	CEP85 (ENSCABG00000010561)	SH3BGRL3 (ENSCABG00000010556)	ENSCABG00000010555	CRYBG2 (ENSCABG00000010552)	ENSCABG00000010545	LIN28A (ENSCABG00000010540)	DHDDS (ENSCABG00000010539)	ENSCABG00000010538	RPS6KA1 (ENSCABG00000009917)	ARID1A (ENSCABG00000009903)	PIGV (ENSCABG00000009900)	ZDHHC18 (ENSCABG00000009894)	SFN (ENSCABG00000009891)	ENSCABG00000009880 #22	GPN2 (ENSCABG00000009877)	GPATCH3 (ENSCABG00000009876)	NR0B2 (ENSCABG00000009874)	NUDC (ENSCABG00000009873)	KDF1 (ENSCABG00000009869)	TENT5B (ENSCABG00000009867)	SLC9A1 (ENSCABG00000009864)	WDTC1 (ENSCABG00000009862)	TMEM222 (ENSCABG00000009856)	ENSCABG00000009853	SYTL1 (ENSCABG00000009852)	MAP3K6 (ENSCABG00000009850)	ENSCABG00000009847	ENSCABG00000009846	GPR3 (ENSCABG00000009844)
Abingdon island giant tortoise	MODERN SPECIES	1570											ENSCABG00000020655	ENSCABG00000020656	MPC1 (ENSCABG00000020657) #20	SFT2D1 (ENSCABG00000020658) #21	PRR18 (ENSCABG00000020659)	TBXT (ENSCABG00000020660) #22	PDE10A (ENSCABG00000020664) #24	C6orf118 (ENSCABG00000020672) #25	ENSCABG00000020678
Emydidae	ANCESTRAL SPECIES		ENSGT00940000162166	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT00940000168209	ENSGT01030000234667.b.b #16	ENSGT00390000007441 #17	ENSGT01030000234667.b.a #16	ENSGT00640000091563.a #18	ENSGT00940000159956.j #19	ENSGT00510000046988 #20	ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00390000011034 #28	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208.s #31	ENSGT00940000160810 #32	ENSGT00940000155089.g #33	ENSGT00940000155089.h #33	ENSGT00390000013943 #35	ENSGT00940000153167.A.a #37	ENSGT00390000006394	ENSGT00550000074878
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	757	ENSCPBG00000025033	ENSCPBG00000025025	CEP85 (ENSCPBG00000025023)	SH3BGRL3 (ENSCPBG00000025022)	UBXN11 (ENSCPBG00000025020)	CRYBG2 (ENSCPBG00000025018)	ENSCPBG00000025015	LIN28A (ENSCPBG00000025010)	DHDDS (ENSCPBG00000025006)	ENSCPBG00000025004	RPS6KA1 (ENSCPBG00000024989)	ARID1A (ENSCPBG00000024979)	PIGV (ENSCPBG00000024976)	ZDHHC18 (ENSCPBG00000024975)	SFN (ENSCPBG00000024974)	ENSCPBG00000024973 #22	GPN2 (ENSCPBG00000024969)	GPATCH3 (ENSCPBG00000024968)	NR0B2 (ENSCPBG00000024966)	NUDC (ENSCPBG00000024964)	KDF1 (ENSCPBG00000024960)	TRNP1 (ENSCPBG00000024958)	TENT5B (ENSCPBG00000024956)	SLC9A1 (ENSCPBG00000024951)	WDTC1 (ENSCPBG00000024946)	TMEM222 (ENSCPBG00000024943)	ENSCPBG00000024939	SYTL1 (ENSCPBG00000024928)	MAP3K6 (ENSCPBG00000024904)	ENSCPBG00000024896	CD164L2 (ENSCPBG00000024894)
painted turtle	MODERN SPECIES	780													ENSCPBG00000019894	MPC1 (ENSCPBG00000019891) #20	SFT2D1 (ENSCPBG00000019885) #21	TBXT (ENSCPBG00000019876) #22	PDE10A (ENSCPBG00000019866) #24	C6orf118 (ENSCPBG00000019856) #25	ENSCPBG00000019838	QKI (ENSCPBG00000019817) #26	PACRG (ENSCPBG00000019814) #27	ENSCPBG00000019808 #28	ENSCPBG00000019807	ENSCPBG00000019805 #28
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	111	ENSTMTG00000012713	CEP85 (ENSTMTG00000012688)	SH3BGRL3 (ENSTMTG00000012684)	UBXN11 (ENSTMTG00000012576)	CRYBG2 (ENSTMTG00000012289)	ENSTMTG00000012263	ENSTMTG00000012176	LIN28A (ENSTMTG00000012153)	DHDDS (ENSTMTG00000012136)	ENSTMTG00000012122	RPS6KA1 (ENSTMTG00000010867)	ARID1A (ENSTMTG00000010637)	PIGV (ENSTMTG00000010620)	ZDHHC18 (ENSTMTG00000010602)	SFN (ENSTMTG00000010580)	ENSTMTG00000010529 #22	GPN2 (ENSTMTG00000010508)	GPATCH3 (ENSTMTG00000010492)	NR0B2 (ENSTMTG00000010483)	NUDC (ENSTMTG00000010465)	KDF1 (ENSTMTG00000010454)	TRNP1 (ENSTMTG00000010438)	TENT5B (ENSTMTG00000010434)	SLC9A1 (ENSTMTG00000010422)	WDTC1 (ENSTMTG00000010408)	TMEM222 (ENSTMTG00000012958)	ENSTMTG00000012936	SYTL1 (ENSTMTG00000012905)	MAP3K6 (ENSTMTG00000012859)	ENSTMTG00000012835	CD164L2 (ENSTMTG00000012818)
Three-toed box turtle	MODERN SPECIES	31	FRMD1 (ENSTMTG00000021800)	KIF25 (ENSTMTG00000021827)	AFDN (ENSTMTG00000021848)	UNC93A (ENSTMTG00000021881)	TTLL2 (ENSTMTG00000021884)	ENSTMTG00000021889	GPR31 (ENSTMTG00000021897)	ENSTMTG00000021900 #16	CEP43 (ENSTMTG00000021905) #17	ENSTMTG00000021910 #16	RNASET2 (ENSTMTG00000021913) #18	RPS6KA2 (ENSTMTG00000021924) #19	MPC1 (ENSTMTG00000021974) #20	SFT2D1 (ENSTMTG00000021980) #21	PRR18 (ENSTMTG00000021992)	TBXT (ENSTMTG00000021998) #22	PDE10A (ENSTMTG00000000202) #24	C6orf118 (ENSTMTG00000000353) #25	QKI (ENSTMTG00000000384) #26	PACRG (ENSTMTG00000000409) #27	ENSTMTG00000000424 #28	ENSTMTG00000000439	ENSTMTG00000000447 #28	ENSTMTG00000000469 #28	AGPAT4 (ENSTMTG00000000495) #29	MAP3K4 (ENSTMTG00000000543) #30	ENSTMTG00000000636 #31	SLC22A3 (ENSTMTG00000000668) #32	ENSTMTG00000000691 #33	ENSTMTG00000000699 #33	IGF2R (ENSTMTG00000000723) #35
Anura	ANCESTRAL SPECIES	240														ENSGT00390000018525.a.a #21	ENSGT00390000002164	ENSGT00940000157912 #22	ENSGT00940000156543 #24	ENSGT00390000009877 #25	ENSGT00940000163882.a.a	ENSGT00940000155310.b #26	ENSGT00940000157330 #27	ENSGT00950000182836.b.b.b.b #29	ENSGT00880000138034 #30	ENSGT00940000155208 #31	ENSGT00940000160810 #32
Frog	MODERN SPECIES	5	tbce (ENSXETG00000013067)	ggps1 (ENSXETG00000013068)	arid4b (ENSXETG00000024651)	tomm20 (ENSXETG00000024650)	irf2bp2 (ENSXETG00000024649)	qpct (ENSXETG00000013098)	mocs3 (ENSXETG00000024648)	ndufaf7 (ENSXETG00000000653)	cebpz (ENSXETG00000000654)	rps6ka2 (ENSXETG00000025994) #19	trim50 (ENSXETG00000041526)	mpc1 (ENSXETG00000025990) #20	ENSXETG00000036896	sft2d1 (ENSXETG00000026578) #21	PRR18 (ENSXETG00000037784)	tbxt (ENSXETG00000026572) #22	ENSXETG00000042559	pde10a (ENSXETG00000005369) #24	c6orf118 (ENSXETG00000005368) #25	ENSXETG00000005367	qki (ENSXETG00000015705) #26	pacrg (ENSXETG00000010781) #27	ENSXETG00000047260	agpat4 (ENSXETG00000013131) #29	scaf8 (ENSXETG00000013132)	cnksr3 (ENSXETG00000023302)	unc93a.1 (ENSXETG00000044848)	afdn (ENSXETG00000023305)	XB22065091 [provisional:unc93a] (ENSXETG00000034497)	capn9 (ENSXETG00000023310)	taf5l (ENSXETG00000023330)
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000011819	ENSLLEG00000011808	ENSLLEG00000011749	ENSLLEG00000011696	ENSLLEG00000011636	ENSLLEG00000011611	TARBP1 (ENSLLEG00000010025)	ENSLLEG00000009477	ENSLLEG00000009319	MPC1 (ENSLLEG00000009223) #20	ENSLLEG00000009208	ENSLLEG00000009188	ENSLLEG00000009149	ENSLLEG00000009099	ENSLLEG00000009016 #22	ENSLLEG00000008802 #22	ENSLLEG00000008766	FH (ENSLLEG00000007980)	ENSLLEG00000007925	ENSLLEG00000007856	ZBTB18 (ENSLLEG00000007836)	ENSLLEG00000007819	ENSLLEG00000007504	ENSLLEG00000007458	ENSLLEG00000007445	TBP (ENSLLEG00000007226)	ENSLLEG00000007171	ENSLLEG00000007155	PSMB1 (ENSLLEG00000006976)	ENSLLEG00000006938	ENSLLEG00000006928
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000011835	ENSLLEG00000011819	ENSLLEG00000011808	ENSLLEG00000011749	ENSLLEG00000011696	ENSLLEG00000011636	ENSLLEG00000011611	TARBP1 (ENSLLEG00000010025)	ENSLLEG00000009477	ENSLLEG00000009319	MPC1 (ENSLLEG00000009223) #20	ENSLLEG00000009208	ENSLLEG00000009188	ENSLLEG00000009149	ENSLLEG00000009099	ENSLLEG00000009016 #22	ENSLLEG00000008802 #22	ENSLLEG00000008766	FH (ENSLLEG00000007980)	ENSLLEG00000007925	ENSLLEG00000007856	ZBTB18 (ENSLLEG00000007836)	ENSLLEG00000007819	ENSLLEG00000007504	ENSLLEG00000007458	ENSLLEG00000007445	TBP (ENSLLEG00000007226)	ENSLLEG00000007171	ENSLLEG00000007155	PSMB1 (ENSLLEG00000006976)	ENSLLEG00000006938
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	306									LIN28A (ENSLACG00000002747)	ENSLACG00000004677	DHDDS (ENSLACG00000005203)	RPS6KA1 (ENSLACG00000007521)	ZDHHC18 (ENSLACG00000008383)	PIGV (ENSLACG00000008619)	ARID1A (ENSLACG00000008843)	ENSLACG00000011042 #22	GPN2 (ENSLACG00000011279)	GPATCH3 (ENSLACG00000011400)	NR0B2 (ENSLACG00000011527)	NUDC (ENSLACG00000011655)	KDF1 (ENSLACG00000012128)	ENSLACG00000013069	WDTC1 (ENSLACG00000014179)	TMEM222 (ENSLACG00000014459)	tpbga (ENSLACG00000014617)	SYTL1 (ENSLACG00000015092)	MAP3K6 (ENSLACG00000015267)	ENSLACG00000015555	ENSLACG00000015622	ENSLACG00000015719	GPR3 (ENSLACG00000022227)
Coelacanth	MODERN SPECIES	382	TBP (ENSLACG00000005118)	PDCD2 (ENSLACG00000005872)	ENSLACG00000006227	GPATCH11 (ENSLACG00000008344)	ENSLACG00000022552	MRPL4 (ENSLACG00000009255)	ENSLACG00000009811	SLC30A6 (ENSLACG00000010855)	ENSLACG00000022642	GGPS1 (ENSLACG00000012397)	TBCE (ENSLACG00000012659)	B3GALNT2 (ENSLACG00000013209)	RBM34 (ENSLACG00000013628)	NUP133 (ENSLACG00000013878)	TOMM20 (ENSLACG00000014544)	TBXT (ENSLACG00000015449) #22	TTC13 (ENSLACG00000015671)	ARV1 (ENSLACG00000016152)	C1orf131 (ENSLACG00000016190)	GNPAT (ENSLACG00000016223)	EXOC8 (ENSLACG00000016425)	tfb2m (ENSLACG00000016461)	PPIL4 (ENSLACG00000016551)	ENSLACG00000016816	TAB2 (ENSLACG00000016935)