Murinae	ANCESTRAL SPECIES	10	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT01090000260040.a.a.a.r #33	ENSGT00390000003465.b.b #34	ENSGT00940000155788 #35	ENSGT00940000158862 #36	ENSGT00390000013305.a.b #37
Mus	ANCESTRAL SPECIES	11	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.a.j.b ##15	ENSGT00700000106136 #14	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT01090000260040.a.a.a.r #33	ENSGT00860000135649	ENSGT00390000003465.b.b #34	ENSGT00940000155788 #35	ENSGT00940000158862 #36
Mus_A	ANCESTRAL SPECIES	13	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a.k #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.a.j.b ##15	ENSGT00700000106136 #14	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b.o.a.a #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT01090000260040.a.a.a.r #33	ENSGT00860000135649	ENSGT00390000003465.b.b #34	ENSGT00940000155788 #35	ENSGT00940000158862 #36
Mus_B	ANCESTRAL SPECIES	12	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a.k #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.a.j.b ##15	ENSGT00700000106136 #14	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b.o.a.a #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT01090000260040.a.a.a.r #33	ENSGT00860000135649	ENSGT00390000003465.b.b #34	ENSGT00940000155788 #35	ENSGT00940000158862 #36
Mouse	MODERN SPECIES	6	Sema5a (ENSMUSG00000022231) #7	Sdc2 (ENSMUSG00000022261) #8	Cpq (ENSMUSG00000039007) #9	Tspyl5 (ENSMUSG00000038984) #10	Mtdh (ENSMUSG00000022255) #11	Laptm4b (ENSMUSG00000022257) #12	Matn2 (ENSMUSG00000022324) #13	9430069I07Rik (ENSMUSG00000094447) #14	Rpl30 (ENSMUSG00000058600) #15	Erich5 (ENSMUSG00000044726) #16	Rida (ENSMUSG00000022323) #17	Pop1 (ENSMUSG00000022325) #18	Nipal2 (ENSMUSG00000038879) #19	Kcns2 (ENSMUSG00000050963) #20	Stk3 (ENSMUSG00000022329) #21	Osr2 (ENSMUSG00000022330) #22	Vps13b (ENSMUSG00000037646) #23	Cox6c (ENSMUSG00000014313) #24	Rgs22 (ENSMUSG00000037627) #25	Fbxo43 (ENSMUSG00000048230) #26	Polr2k (ENSMUSG00000045996) #27	Spag1 (ENSMUSG00000037617) #28	Rnf19a (ENSMUSG00000022280) #29	Ankrd46 (ENSMUSG00000048307) #30	Snx31 (ENSMUSG00000013611) #31	Pabpc1 (ENSMUSG00000022283) #32	Ywhaz (ENSMUSG00000022285) #33	Zfp706 (ENSMUSG00000062397) #34	Grhl2 (ENSMUSG00000022286) #35	Ncald (ENSMUSG00000051359) #36	Rrm2b (ENSMUSG00000022292) #37
Mus_C	ANCESTRAL SPECIES	28	ENSGT00940000158036 #7	ENSGT00940000157222 #8	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a.k #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b.o.a.a #27	ENSGT00940000164643	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT00510000046985.i.b.a	ENSGT01090000260040.a.a.a.r #33	ENSGT00860000135649	ENSGT00390000003465.b.b #34
spretus	MODERN SPECIES	6	Tas2r119 (MGP_SPRETEiJ_G0020610)	Sema5a (MGP_SPRETEiJ_G0020611) #7	Cpq (MGP_SPRETEiJ_G0020613) #9	Tspyl5 (MGP_SPRETEiJ_G0020614) #10	Mtdh (MGP_SPRETEiJ_G0020615) #11	Laptm4b (MGP_SPRETEiJ_G0020616) #12	Matn2 (MGP_SPRETEiJ_G0020617) #13	MGP_SPRETEiJ_G0020618	Rpl30 (MGP_SPRETEiJ_G0020619) #15	Erich5 (MGP_SPRETEiJ_G0020620) #16	Rida (MGP_SPRETEiJ_G0020621) #17	Pop1 (MGP_SPRETEiJ_G0020622) #18	Nipal2 (MGP_SPRETEiJ_G0020623) #19	Kcns2 (MGP_SPRETEiJ_G0020624) #20	Stk3 (MGP_SPRETEiJ_G0020625) #21	Osr2 (MGP_SPRETEiJ_G0020626) #22	Vps13b (MGP_SPRETEiJ_G0020627) #23	Cox6c (MGP_SPRETEiJ_G0020628) #24	Rgs22 (MGP_SPRETEiJ_G0020629) #25	Fbxo43 (MGP_SPRETEiJ_G0020630) #26	Polr2k (MGP_SPRETEiJ_G0020631) #27	Spag1 (MGP_SPRETEiJ_G0020632) #28	Rnf19a (MGP_SPRETEiJ_G0020633) #29	Ankrd46 (MGP_SPRETEiJ_G0020634) #30	Snx31 (MGP_SPRETEiJ_G0020635) #31	Pabpc1 (MGP_SPRETEiJ_G0020636) #32	MGP_SPRETEiJ_G0020637	Ywhaz (MGP_SPRETEiJ_G0020638) #33	MGP_SPRETEiJ_G0020639	Zfp706 (MGP_SPRETEiJ_G0020640) #34	Grhl2 (MGP_SPRETEiJ_G0020641) #35
Steppe mouse	MODERN SPECIES	3308	Cpq (ENSMSIG00000016806) #9	Tspyl5 (ENSMSIG00000016794) #10	ENSMSIG00000016786	Mtdh (ENSMSIG00000016720) #11	ENSMSIG00000016703	Laptm4b (ENSMSIG00000016687) #12	9430069I07Rik (ENSMSIG00000016655) #14	Matn2 (ENSMSIG00000016562) #13	ENSMSIG00000016533 ##15	Erich5 (ENSMSIG00000016520) #16	Rida (ENSMSIG00000016480) #17	Pop1 (ENSMSIG00000016402) #18	Nipal2 (ENSMSIG00000016374) #19	Kcns2 (ENSMSIG00000016369) #20	Stk3 (ENSMSIG00000016310) #21	Osr2 (ENSMSIG00000016289) #22	Vps13b (ENSMSIG00000016021) #23	Cox6c (ENSMSIG00000015963) #24	ENSMSIG00000015927	Rgs22 (ENSMSIG00000015850) #25	Fbxo43 (ENSMSIG00000015840) #26	ENSMSIG00000015808	Spag1 (ENSMSIG00000015763) #28	Rnf19a (ENSMSIG00000015703) #29	ENSMSIG00000015663 #30	Snx31 (ENSMSIG00000015612) #31	Pabpc1 (ENSMSIG00000015570) #32	ENSMSIG00000015548	ENSMSIG00000015546	Ywhaz (ENSMSIG00000015504) #33	ENSMSIG00000015497
Ryukyu mouse	MODERN SPECIES	6	Sema5a (MGP_CAROLIEiJ_G0019715) #7	Sdc2 (MGP_CAROLIEiJ_G0019716) #8	Cpq (MGP_CAROLIEiJ_G0019717) #9	Tspyl5 (MGP_CAROLIEiJ_G0019718) #10	Mtdh (MGP_CAROLIEiJ_G0019719) #11	Laptm4b (MGP_CAROLIEiJ_G0019720) #12	Matn2 (MGP_CAROLIEiJ_G0019721) #13	MGP_CAROLIEiJ_G0019722 #14	Rpl30 (MGP_CAROLIEiJ_G0019723) #15	Erich5 (MGP_CAROLIEiJ_G0019724) #16	Rida (MGP_CAROLIEiJ_G0019725) #17	Pop1 (MGP_CAROLIEiJ_G0019726) #18	Nipal2 (MGP_CAROLIEiJ_G0019727) #19	Kcns2 (MGP_CAROLIEiJ_G0019728) #20	Stk3 (MGP_CAROLIEiJ_G0019729) #21	Osr2 (MGP_CAROLIEiJ_G0019730) #22	Vps13b (MGP_CAROLIEiJ_G0019731) #23	Cox6c (MGP_CAROLIEiJ_G0019732) #24	Rgs22 (MGP_CAROLIEiJ_G0019733) #25	Fbxo43 (MGP_CAROLIEiJ_G0019734) #26	Polr2k (MGP_CAROLIEiJ_G0019735) #27	Spag1 (MGP_CAROLIEiJ_G0019736) #28	Rnf19a (MGP_CAROLIEiJ_G0019737) #29	Ankrd46 (MGP_CAROLIEiJ_G0019738) #30	Snx31 (MGP_CAROLIEiJ_G0019739) #31	Pabpc1 (MGP_CAROLIEiJ_G0019740) #32	Ywhaz (MGP_CAROLIEiJ_G0019741) #33	MGP_CAROLIEiJ_G0019742	Zfp706 (MGP_CAROLIEiJ_G0019743) #34	Grhl2 (MGP_CAROLIEiJ_G0019744) #35	Ncald (MGP_CAROLIEiJ_G0019745) #36
Shrew mouse	MODERN SPECIES	8	MGP_PahariEiJ_G0019724 #7	Sdc2 (MGP_PahariEiJ_G0019725) #8	Cpq (MGP_PahariEiJ_G0019726) #9	Tspyl5 (MGP_PahariEiJ_G0019727) #10	Mtdh (MGP_PahariEiJ_G0019728) #11	Laptm4b (MGP_PahariEiJ_G0019729) #12	Matn2 (MGP_PahariEiJ_G0019730) #13	MGP_PahariEiJ_G0019731 #14	Rpl30 (MGP_PahariEiJ_G0019732) #15	Erich5 (MGP_PahariEiJ_G0019733) #16	Rida (MGP_PahariEiJ_G0019734) #17	Pop1 (MGP_PahariEiJ_G0019735) #18	Nipal2 (MGP_PahariEiJ_G0019736) #19	Kcns2 (MGP_PahariEiJ_G0019737) #20	Stk3 (MGP_PahariEiJ_G0019738) #21	Osr2 (MGP_PahariEiJ_G0019739) #22	Vps13b (MGP_PahariEiJ_G0019740) #23	Cox6c (MGP_PahariEiJ_G0019741) #24	Rgs22 (MGP_PahariEiJ_G0019742) #25	Fbxo43 (MGP_PahariEiJ_G0019743) #26	MGP_PahariEiJ_G0019744 #27	Spag1 (MGP_PahariEiJ_G0019745) #28	Rnf19a (MGP_PahariEiJ_G0019746) #29	Ankrd46 (MGP_PahariEiJ_G0019747) #30	Snx31 (MGP_PahariEiJ_G0019748) #31	Pabpc1 (MGP_PahariEiJ_G0019749) #32	MGP_PahariEiJ_G0019750 #33	MGP_PahariEiJ_G0019751	Zfp706 (MGP_PahariEiJ_G0019752) #34	Grhl2 (MGP_PahariEiJ_G0019753) #35	Ncald (MGP_PahariEiJ_G0019754) #36
Rat	MODERN SPECIES	17	Sdc2 (ENSRNOG00000004936) #8	Cpq (ENSRNOG00000005931) #9	Tspyl5 (ENSRNOG00000006278) #10	RGD1562404 (ENSRNOG00000014169)	ENSRNOG00000066306	Mtdh (ENSRNOG00000006870) #11	ENSRNOG00000068626	Laptm4b (ENSRNOG00000006766) #12	Matn2 (ENSRNOG00000006060) #13	Erich5 (ENSRNOG00000005956) #16	Rida (ENSRNOG00000005437) #17	Pop1 (ENSRNOG00000005243) #18	Nipal2 (ENSRNOG00000005190) #19	Kcns2 (ENSRNOG00000066111) #20	Stk3 (ENSRNOG00000011278) #21	Osr2 (ENSRNOG00000011136) #22	Vps13b (ENSRNOG00000066252) #23	Cox6c (ENSRNOG00000010807)	RGD1565056 (ENSRNOG00000026873)	Rgs22 (ENSRNOG00000025551) #25	ENSRNOG00000063604	Fbxo43 (ENSRNOG00000010459) #26	Polr2k (ENSRNOG00000010408)	Spag1 (ENSRNOG00000010078) #28	ENSRNOG00000064780	Rnf19a (ENSRNOG00000009658) #29	Ankrd46 (ENSRNOG00000025504) #30	Snx31 (ENSRNOG00000025501) #31	Pabpc1 (ENSRNOG00000008639) #32	LOC362901 (ENSRNOG00000031383)	Ywhaz (ENSRNOG00000008195) #33