Euarchontoglires_A	ANCESTRAL SPECIES	19	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.b ##28	ENSGT00940000164643	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r #33	ENSGT00940000153773.a.b.a.b ##32
Glires	ANCESTRAL SPECIES	20	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.b ##28	ENSGT00940000164643	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r #33	ENSGT00940000153773.a.b.a.b ##32
Rodentia	ANCESTRAL SPECIES	19	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.b ##28	ENSGT00940000164643	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r #33	ENSGT00940000153773.a.b.a.b ##32
Rodentia_B	ANCESTRAL SPECIES	17	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.a	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37
Myomorpha	ANCESTRAL SPECIES	18	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.a	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37
Muroidea	ANCESTRAL SPECIES	14	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.b	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.b	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37
Murinae	ANCESTRAL SPECIES	10	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT01090000260040.a.a.a.r #33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37	ENSGT00390000013305.a.b
Mus	ANCESTRAL SPECIES	11	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.a.j.b ##15	ENSGT00700000106136 #14	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT01090000260040.a.a.a.r #33	ENSGT00860000135649 #34	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37
Mus_A	ANCESTRAL SPECIES	13	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a.k #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.a.j.b ##15	ENSGT00700000106136 #14	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b.o.a.a #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT01090000260040.a.a.a.r #33	ENSGT00860000135649 #34	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37
Ryukyu mouse	MODERN SPECIES	6	Sema5a (MGP_CAROLIEiJ_G0019715) #7	Sdc2 (MGP_CAROLIEiJ_G0019716) #8	Cpq (MGP_CAROLIEiJ_G0019717) #9	Tspyl5 (MGP_CAROLIEiJ_G0019718) #10	Mtdh (MGP_CAROLIEiJ_G0019719) #11	Laptm4b (MGP_CAROLIEiJ_G0019720) #12	Matn2 (MGP_CAROLIEiJ_G0019721) #13	MGP_CAROLIEiJ_G0019722 #14	Rpl30 (MGP_CAROLIEiJ_G0019723) #15	Erich5 (MGP_CAROLIEiJ_G0019724) #16	Rida (MGP_CAROLIEiJ_G0019725) #17	Pop1 (MGP_CAROLIEiJ_G0019726) #18	Nipal2 (MGP_CAROLIEiJ_G0019727) #19	Kcns2 (MGP_CAROLIEiJ_G0019728) #20	Stk3 (MGP_CAROLIEiJ_G0019729) #21	Osr2 (MGP_CAROLIEiJ_G0019730) #22	Vps13b (MGP_CAROLIEiJ_G0019731) #23	Cox6c (MGP_CAROLIEiJ_G0019732) #24	Rgs22 (MGP_CAROLIEiJ_G0019733) #25	Fbxo43 (MGP_CAROLIEiJ_G0019734) #26	Polr2k (MGP_CAROLIEiJ_G0019735) #27	Spag1 (MGP_CAROLIEiJ_G0019736) #28	Rnf19a (MGP_CAROLIEiJ_G0019737) #29	Ankrd46 (MGP_CAROLIEiJ_G0019738) #30	Snx31 (MGP_CAROLIEiJ_G0019739) #31	Pabpc1 (MGP_CAROLIEiJ_G0019740) #32	Ywhaz (MGP_CAROLIEiJ_G0019741) #33	MGP_CAROLIEiJ_G0019742 #34	Zfp706 (MGP_CAROLIEiJ_G0019743) #35	Grhl2 (MGP_CAROLIEiJ_G0019744) #36	Ncald (MGP_CAROLIEiJ_G0019745) #37
Mus_B	ANCESTRAL SPECIES	12	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a.k #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.a.j.b ##15	ENSGT00700000106136 #14	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b.o.a.a #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT01090000260040.a.a.a.r #33	ENSGT00860000135649 #34	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37
Mouse	MODERN SPECIES	6	Sema5a (ENSMUSG00000022231) #7	Sdc2 (ENSMUSG00000022261) #8	Cpq (ENSMUSG00000039007) #9	Tspyl5 (ENSMUSG00000038984) #10	Mtdh (ENSMUSG00000022255) #11	Laptm4b (ENSMUSG00000022257) #12	Matn2 (ENSMUSG00000022324) #13	9430069I07Rik (ENSMUSG00000094447) #14	Rpl30 (ENSMUSG00000058600) #15	Erich5 (ENSMUSG00000044726) #16	Rida (ENSMUSG00000022323) #17	Pop1 (ENSMUSG00000022325) #18	Nipal2 (ENSMUSG00000038879) #19	Kcns2 (ENSMUSG00000050963) #20	Stk3 (ENSMUSG00000022329) #21	Osr2 (ENSMUSG00000022330) #22	Vps13b (ENSMUSG00000037646) #23	Cox6c (ENSMUSG00000014313) #24	Rgs22 (ENSMUSG00000037627) #25	Fbxo43 (ENSMUSG00000048230) #26	Polr2k (ENSMUSG00000045996) #27	Spag1 (ENSMUSG00000037617) #28	Rnf19a (ENSMUSG00000022280) #29	Ankrd46 (ENSMUSG00000048307) #30	Snx31 (ENSMUSG00000013611) #31	Pabpc1 (ENSMUSG00000022283) #32	Ywhaz (ENSMUSG00000022285) #33	Zfp706 (ENSMUSG00000062397) #35	Grhl2 (ENSMUSG00000022286) #36	Ncald (ENSMUSG00000051359) #37	Rrm2b (ENSMUSG00000022292)
Mus_C	ANCESTRAL SPECIES	28	ENSGT00940000158036 #7	ENSGT00940000157222 #8	ENSGT00950000182878.b.b.o	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a.k #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b.o.a.a #27	ENSGT00940000164643	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.b #32	ENSGT00510000046985.i.b.a	ENSGT01090000260040.a.a.a.r #33	ENSGT00860000135649 #34	ENSGT00390000003465.b.b #35
spretus	MODERN SPECIES	6	Tas2r119 (MGP_SPRETEiJ_G0020610)	Sema5a (MGP_SPRETEiJ_G0020611) #7	Cpq (MGP_SPRETEiJ_G0020613) #9	Tspyl5 (MGP_SPRETEiJ_G0020614) #10	Mtdh (MGP_SPRETEiJ_G0020615) #11	Laptm4b (MGP_SPRETEiJ_G0020616) #12	Matn2 (MGP_SPRETEiJ_G0020617) #13	MGP_SPRETEiJ_G0020618	Rpl30 (MGP_SPRETEiJ_G0020619) #15	Erich5 (MGP_SPRETEiJ_G0020620) #16	Rida (MGP_SPRETEiJ_G0020621) #17	Pop1 (MGP_SPRETEiJ_G0020622) #18	Nipal2 (MGP_SPRETEiJ_G0020623) #19	Kcns2 (MGP_SPRETEiJ_G0020624) #20	Stk3 (MGP_SPRETEiJ_G0020625) #21	Osr2 (MGP_SPRETEiJ_G0020626) #22	Vps13b (MGP_SPRETEiJ_G0020627) #23	Cox6c (MGP_SPRETEiJ_G0020628) #24	Rgs22 (MGP_SPRETEiJ_G0020629) #25	Fbxo43 (MGP_SPRETEiJ_G0020630) #26	Polr2k (MGP_SPRETEiJ_G0020631) #27	Spag1 (MGP_SPRETEiJ_G0020632) #28	Rnf19a (MGP_SPRETEiJ_G0020633) #29	Ankrd46 (MGP_SPRETEiJ_G0020634) #30	Snx31 (MGP_SPRETEiJ_G0020635) #31	Pabpc1 (MGP_SPRETEiJ_G0020636) #32	MGP_SPRETEiJ_G0020637	Ywhaz (MGP_SPRETEiJ_G0020638) #33	MGP_SPRETEiJ_G0020639 #34	Zfp706 (MGP_SPRETEiJ_G0020640) #35	Grhl2 (MGP_SPRETEiJ_G0020641) #36
Steppe mouse	MODERN SPECIES	3308	Cpq (ENSMSIG00000016806) #9	Tspyl5 (ENSMSIG00000016794) #10	ENSMSIG00000016786	Mtdh (ENSMSIG00000016720) #11	ENSMSIG00000016703	Laptm4b (ENSMSIG00000016687) #12	9430069I07Rik (ENSMSIG00000016655) #14	Matn2 (ENSMSIG00000016562) #13	ENSMSIG00000016533 ##15	Erich5 (ENSMSIG00000016520) #16	Rida (ENSMSIG00000016480) #17	Pop1 (ENSMSIG00000016402) #18	Nipal2 (ENSMSIG00000016374) #19	Kcns2 (ENSMSIG00000016369) #20	Stk3 (ENSMSIG00000016310) #21	Osr2 (ENSMSIG00000016289) #22	Vps13b (ENSMSIG00000016021) #23	Cox6c (ENSMSIG00000015963) #24	ENSMSIG00000015927	Rgs22 (ENSMSIG00000015850) #25	Fbxo43 (ENSMSIG00000015840) #26	ENSMSIG00000015808	Spag1 (ENSMSIG00000015763) #28	Rnf19a (ENSMSIG00000015703) #29	ENSMSIG00000015663 #30	Snx31 (ENSMSIG00000015612) #31	Pabpc1 (ENSMSIG00000015570) #32	ENSMSIG00000015548	ENSMSIG00000015546	Ywhaz (ENSMSIG00000015504) #33	ENSMSIG00000015497 #34
Shrew mouse	MODERN SPECIES	8	MGP_PahariEiJ_G0019724 #7	Sdc2 (MGP_PahariEiJ_G0019725) #8	Cpq (MGP_PahariEiJ_G0019726) #9	Tspyl5 (MGP_PahariEiJ_G0019727) #10	Mtdh (MGP_PahariEiJ_G0019728) #11	Laptm4b (MGP_PahariEiJ_G0019729) #12	Matn2 (MGP_PahariEiJ_G0019730) #13	MGP_PahariEiJ_G0019731 #14	Rpl30 (MGP_PahariEiJ_G0019732) #15	Erich5 (MGP_PahariEiJ_G0019733) #16	Rida (MGP_PahariEiJ_G0019734) #17	Pop1 (MGP_PahariEiJ_G0019735) #18	Nipal2 (MGP_PahariEiJ_G0019736) #19	Kcns2 (MGP_PahariEiJ_G0019737) #20	Stk3 (MGP_PahariEiJ_G0019738) #21	Osr2 (MGP_PahariEiJ_G0019739) #22	Vps13b (MGP_PahariEiJ_G0019740) #23	Cox6c (MGP_PahariEiJ_G0019741) #24	Rgs22 (MGP_PahariEiJ_G0019742) #25	Fbxo43 (MGP_PahariEiJ_G0019743) #26	MGP_PahariEiJ_G0019744 #27	Spag1 (MGP_PahariEiJ_G0019745) #28	Rnf19a (MGP_PahariEiJ_G0019746) #29	Ankrd46 (MGP_PahariEiJ_G0019747) #30	Snx31 (MGP_PahariEiJ_G0019748) #31	Pabpc1 (MGP_PahariEiJ_G0019749) #32	MGP_PahariEiJ_G0019750 #33	MGP_PahariEiJ_G0019751 #34	Zfp706 (MGP_PahariEiJ_G0019752) #35	Grhl2 (MGP_PahariEiJ_G0019753) #36	Ncald (MGP_PahariEiJ_G0019754) #37
Rat	MODERN SPECIES	17	Sdc2 (ENSRNOG00000004936) #8	Cpq (ENSRNOG00000005931) #9	Tspyl5 (ENSRNOG00000006278) #10	RGD1562404 (ENSRNOG00000014169)	ENSRNOG00000066306	Mtdh (ENSRNOG00000006870) #11	ENSRNOG00000068626	Laptm4b (ENSRNOG00000006766) #12	Matn2 (ENSRNOG00000006060) #13	Erich5 (ENSRNOG00000005956) #16	Rida (ENSRNOG00000005437) #17	Pop1 (ENSRNOG00000005243) #18	Nipal2 (ENSRNOG00000005190) #19	Kcns2 (ENSRNOG00000066111) #20	Stk3 (ENSRNOG00000011278) #21	Osr2 (ENSRNOG00000011136) #22	Vps13b (ENSRNOG00000066252) #23	Cox6c (ENSRNOG00000010807)	RGD1565056 (ENSRNOG00000026873)	Rgs22 (ENSRNOG00000025551) #25	ENSRNOG00000063604	Fbxo43 (ENSRNOG00000010459) #26	Polr2k (ENSRNOG00000010408)	Spag1 (ENSRNOG00000010078) #28	ENSRNOG00000064780	Rnf19a (ENSRNOG00000009658) #29	Ankrd46 (ENSRNOG00000025504) #30	Snx31 (ENSRNOG00000025501) #31	Pabpc1 (ENSRNOG00000008639) #32	LOC362901 (ENSRNOG00000031383)	Ywhaz (ENSRNOG00000008195) #33
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.b	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37	ENSGT00390000013305.a.b
Northern American deer mouse	MODERN SPECIES	12	ENSPEMG00000029126	Sdc2 (ENSPEMG00000001814) #8	Cpq (ENSPEMG00000007404) #9	Tspyl5 (ENSPEMG00000005131) #10	Mtdh (ENSPEMG00000021866) #11	Laptm4b (ENSPEMG00000021641) #12	ENSPEMG00000031351	Matn2 (ENSPEMG00000022322) #13	ENSPEMG00000022132 #15	Erich5 (ENSPEMG00000021961) #16	Rida (ENSPEMG00000021792) #17	Pop1 (ENSPEMG00000023633) #18	Nipal2 (ENSPEMG00000022571) #19	Kcns2 (ENSPEMG00000030882) #20	ENSPEMG00000022099 #21	Osr2 (ENSPEMG00000023942) #22	ENSPEMG00000022768	Vps13b (ENSPEMG00000021894) #23	ENSPEMG00000023434 #24	Rgs22 (ENSPEMG00000001987) #25	Fbxo43 (ENSPEMG00000009599) #26	ENSPEMG00000012015 ##27	Spag1 (ENSPEMG00000010823) #28	Rnf19a (ENSPEMG00000010959) #29	ENSPEMG00000026775	Ankrd46 (ENSPEMG00000028516) #30	Snx31 (ENSPEMG00000012435) #31	ENSPEMG00000014998 ##32	ENSPEMG00000021714 ##33	Zfp706 (ENSPEMG00000027958) #35	Grhl2 (ENSPEMG00000010802) #36
Prairie vole	MODERN SPECIES	112	Mterf3 (ENSMOCG00000009078)	Ptdss1 (ENSMOCG00000015040)	Sdc2 (ENSMOCG00000012681) #8	Cpq (ENSMOCG00000017639) #9	Tspyl5 (ENSMOCG00000021860) #10	Mtdh (ENSMOCG00000008389) #11	Laptm4b (ENSMOCG00000019392) #12	Matn2 (ENSMOCG00000002507) #13	Rpl30 (ENSMOCG00000006624) #15	Erich5 (ENSMOCG00000015882) #16	Rida (ENSMOCG00000014887) #17	Pop1 (ENSMOCG00000006356) #18	Nipal2 (ENSMOCG00000019111) #19	Kcns2 (ENSMOCG00000001182) #20	Stk3 (ENSMOCG00000012460) #21	Osr2 (ENSMOCG00000003261) #22	Vps13b (ENSMOCG00000019739) #23	Cox6c (ENSMOCG00000021318) #24	Rgs22 (ENSMOCG00000008860) #25	Fbxo43 (ENSMOCG00000019801) #26	Polr2k (ENSMOCG00000009880) #27	Spag1 (ENSMOCG00000003182) #28	Rnf19a (ENSMOCG00000003595) #29	Ankrd46 (ENSMOCG00000009913) #30	Snx31 (ENSMOCG00000009981) #31	ENSMOCG00000018191 ##32	ENSMOCG00000006605 ##33	Zfp706 (ENSMOCG00000008648) #35	Grhl2 (ENSMOCG00000001176) #36	Ncald (ENSMOCG00000017199) #37	Rrm2b (ENSMOCG00000004169)
Cricetinae	ANCESTRAL SPECIES	38	ENSGT00390000012916.t	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.b	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37
Golden Hamster	MODERN SPECIES	651	Sdc2 (ENSMAUG00000018116) #8	ENSMAUG00000006096	Cpq (ENSMAUG00000010428) #9	Tspyl5 (ENSMAUG00000007134) #10	ENSMAUG00000002158	Mtdh (ENSMAUG00000001085) #11	Laptm4b (ENSMAUG00000014122) #12	Matn2 (ENSMAUG00000000454) #13	Rpl30 (ENSMAUG00000006886) #15	Rida (ENSMAUG00000000274) #17	Pop1 (ENSMAUG00000017537) #18	ENSMAUG00000016175	Nipal2 (ENSMAUG00000012882) #19	Kcns2 (ENSMAUG00000016680) #20	Stk3 (ENSMAUG00000016665) #21	Osr2 (ENSMAUG00000010756) #22	Vps13b (ENSMAUG00000013877) #23	Rgs22 (ENSMAUG00000005717) #25	Fbxo43 (ENSMAUG00000011238) #26	Polr2k (ENSMAUG00000010288) #27	Spag1 (ENSMAUG00000003740) #28	Rnf19a (ENSMAUG00000010432) #29	Ankrd46 (ENSMAUG00000012258) #30	Snx31 (ENSMAUG00000014120) #31	ENSMAUG00000003523 ##32	ENSMAUG00000008936	Ywhaz (ENSMAUG00000001602) ##33	Zfp706 (ENSMAUG00000000628) #35	ENSMAUG00000000279 #36	ENSMAUG00000005244 #36	Ncald (ENSMAUG00000000793) #37
Chinese hamster chok1gshd	MODERN SPECIES	207	ENSCGRG00001022919	Mterf3 (ENSCGRG00001020186)	PTDSS1 (ENSCGRG00001017439)	Sdc2 (ENSCGRG00001015958) #8	ENSCGRG00001013803	Tspyl5 (ENSCGRG00001012646) #10	Mtdh (ENSCGRG00001010894) #11	Laptm4b (ENSCGRG00001006505) #12	Matn2 (ENSCGRG00001022796) #13	Rpl30 (ENSCGRG00001020021) #15	Rida (ENSCGRG00001019905) #17	Pop1 (ENSCGRG00001017308) #18	Nipal2 (ENSCGRG00001015512) #19	Kcns2 (ENSCGRG00001014130) #20	Stk3 (ENSCGRG00001014280) #21	Osr2 (ENSCGRG00001011416) #22	Vps13b (ENSCGRG00001019154) #23	Cox6c (ENSCGRG00001001774) #24	Rgs22 (ENSCGRG00001023210) #25	Fbxo43 (ENSCGRG00001022414) #26	Spag1 (ENSCGRG00001013037) #28	Rnf19a (ENSCGRG00001012317) #29	Ankrd46 (ENSCGRG00001011445) #30	Snx31 (ENSCGRG00001007695) #31	ENSCGRG00001022067 ##32	ENSCGRG00001015235	ENSCGRG00001014131 ##33	Zfp706 (ENSCGRG00001011764) #35	Grhl2 (ENSCGRG00001011532) #36	Ncald (ENSCGRG00001004067) #37	ENSCGRG00001002761
Upper Galilee mountains blind mole rat	MODERN SPECIES	760			Cpq (ENSNGAG00000021825) #9	Tspyl5 (ENSNGAG00000013439) #10	ENSNGAG00000020936	Mtdh (ENSNGAG00000011464) #11	Laptm4b (ENSNGAG00000004954) #12	Matn2 (ENSNGAG00000013927) #13	ENSNGAG00000015276 #15	Erich5 (ENSNGAG00000013838) #16	Rida (ENSNGAG00000024030) #17	Pop1 (ENSNGAG00000001582) #18	Nipal2 (ENSNGAG00000021423) #19	Kcns2 (ENSNGAG00000004621) #20	ENSNGAG00000021406 #21	Osr2 (ENSNGAG00000022766) #22	Vps13b (ENSNGAG00000013908) #23	Cox6c (ENSNGAG00000020308) #24	Rgs22 (ENSNGAG00000022745) #25	Fbxo43 (ENSNGAG00000015827) #26	Polr2k (ENSNGAG00000020950) #27	Spag1 (ENSNGAG00000023969) #28	Rnf19a (ENSNGAG00000006667) #29	Ankrd46 (ENSNGAG00000018485) #30	Snx31 (ENSNGAG00000021124) #31	ENSNGAG00000000996 ##32	ENSNGAG00000006289 ##33	ENSNGAG00000010111	Zfp706 (ENSNGAG00000012379) #35
Lesser Egyptian jerboa	MODERN SPECIES	96				Mtdh (ENSJJAG00000017818) #11	ENSJJAG00000014247 #12	ENSJJAG00000012241	Matn2 (ENSJJAG00000022386) #13	ENSJJAG00000021232 ##15	ENSJJAG00000020177	Pop1 (ENSJJAG00000013325) #18	ENSJJAG00000010693	Nipal2 (ENSJJAG00000000450) #19	Kcns2 (ENSJJAG00000021215) #20	Stk3 (ENSJJAG00000019016) #21	ENSJJAG00000012640	Osr2 (ENSJJAG00000012336) #22	Vps13b (ENSJJAG00000017780) #23	ENSJJAG00000019740 #24	Rgs22 (ENSJJAG00000011143) #25	Fbxo43 (ENSJJAG00000007559) #26	ENSJJAG00000000271 ##27	Spag1 (ENSJJAG00000014363) #28	Rnf19a (ENSJJAG00000012255) #29	Ankrd46 (ENSJJAG00000001029) #30	Snx31 (ENSJJAG00000018446) #31	ENSJJAG00000015918 ##32	ENSJJAG00000010886	ENSJJAG00000002258 ##33	Zfp706 (ENSJJAG00000000146) #35	Grhl2 (ENSJJAG00000021484) #36	Ncald (ENSJJAG00000017643) #37
Kangaroo rat	MODERN SPECIES	336	Ptdss1 (ENSDORG00000010478)	Sdc2 (ENSDORG00000023682) #8	ENSDORG00000024009	Cpq (ENSDORG00000015406) #9	Tspyl5 (ENSDORG00000015407) #10	Mtdh (ENSDORG00000004411) #11	Laptm4b (ENSDORG00000026371) #12	Matn2 (ENSDORG00000001226) #13	ENSDORG00000026515 #15	ENSDORG00000012384 #16	Rida (ENSDORG00000015382) #17	Pop1 (ENSDORG00000015384) #18	Nipal2 (ENSDORG00000013257) #19	Kcns2 (ENSDORG00000007088) #20	Stk3 (ENSDORG00000007089) #21	Osr2 (ENSDORG00000011823) #22	Vps13b (ENSDORG00000012357) #23	Cox6c (ENSDORG00000000009) #24	Fbxo43 (ENSDORG00000000697) #26	Polr2k (ENSDORG00000028386) #27	Spag1 (ENSDORG00000000699) #28	Rnf19a (ENSDORG00000000701) #29	Ankrd46 (ENSDORG00000012247) #30	Snx31 (ENSDORG00000014406) #31	Pabpc1 (ENSDORG00000013935) #32	Ywhaz (ENSDORG00000011156) ##33	Zfp706 (ENSDORG00000015819) #35	Grhl2 (ENSDORG00000007051) #36	Ncald (ENSDORG00000025691) #37	Rrm2b (ENSDORG00000007056)	Ubr5 (ENSDORG00000007058)
Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.b ##28	ENSGT00390000008918.a.b ##27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r #33	ENSGT00940000153773.a.b.a.b ##32
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.s.a.b ##15	ENSGT00390000012138.a.a.j.b ##15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.b ##28	ENSGT00390000008918.a.b ##27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r #33	ENSGT00940000153773.a.b.a.b ##32
Eurasian red squirrel	MODERN SPECIES		TSPYL5 (ENSSVLG00005002014) #10	ENSSVLG00005002034 #11	ENSSVLG00005002083	ENSSVLG00005002092	LAPTM4B (ENSSVLG00005002108) #12	MATN2 (ENSSVLG00005002132) #13	ENSSVLG00005002166 ##15	ENSSVLG00005002192	ENSSVLG00005002202	ERICH5 (ENSSVLG00005002215) #16	ENSSVLG00005002234 #17	POP1 (ENSSVLG00005002246) #18	NIPAL2 (ENSSVLG00005002294) #19	KCNS2 (ENSSVLG00005002345) #20	STK3 (ENSSVLG00005002365) #21	OSR2 (ENSSVLG00005002406) #22	VPS13B (ENSSVLG00005002505) #23	ENSSVLG00005002791	ENSSVLG00005002798	ENSSVLG00005002811	ENSSVLG00005002823	ENSSVLG00005002835 #24	RGS22 (ENSSVLG00005002884) #25	FBXO43 (ENSSVLG00005003116) #26	ENSSVLG00005003136 #27	ENSSVLG00005003160 ##28	ENSSVLG00005003189 #28	RNF19A (ENSSVLG00005003226) #29	ENSSVLG00005003243 #30	SNX31 (ENSSVLG00005003271) #31	PABPC1 (ENSSVLG00005003305) ##32
Marmotini	ANCESTRAL SPECIES	10	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.a.j.b ##15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.a.b ##27	ENSGT00940000154697.b ##28	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r #33	ENSGT00940000153773.a.b.a.b ##32	ENSGT01090000260040.a.a.b ##33
Alpin marmot	MODERN SPECIES	18						MTDH (ENSMMMG00000015702) #11	ENSMMMG00000015749	LAPTM4B (ENSMMMG00000015757) #12	MATN2 (ENSMMMG00000015779) #13	ENSMMMG00000015872 ##15	RIDA (ENSMMMG00000015899) #17	POP1 (ENSMMMG00000015905) #18	NIPAL2 (ENSMMMG00000015942) #19	KCNS2 (ENSMMMG00000015951) #20	STK3 (ENSMMMG00000015954) #21	OSR2 (ENSMMMG00000015987) #22	VPS13B (ENSMMMG00000016018) #23	COX6C (ENSMMMG00000016076) #24	RGS22 (ENSMMMG00000016089) #25	FBXO43 (ENSMMMG00000016105) #26	ENSMMMG00000016111 ##27	ENSMMMG00000016116 ##28	ENSMMMG00000016121 #28	RNF19A (ENSMMMG00000016129) #29	ANKRD46 (ENSMMMG00000016148) #30	SNX31 (ENSMMMG00000016151) #31	PABPC1 (ENSMMMG00000016183) ##32	ENSMMMG00000016188 ##33	GRHL2 (ENSMMMG00000016231) #36	NCALD (ENSMMMG00000016254) #37	RRM2B (ENSMMMG00000016263)
Marmotini_b	ANCESTRAL SPECIES	6	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.a.j.b ##15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.a.b ##27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37	ENSGT00390000013305.a.b
Arctic ground squirrel	MODERN SPECIES	1	MTERF3 (ENSUPAG00010013471)	PTDSS1 (ENSUPAG00010013461)	SDC2 (ENSUPAG00010013453) #8	CPQ (ENSUPAG00010013448) #9	TSPYL5 (ENSUPAG00010013417) #10	MTDH (ENSUPAG00010013325) #11	LAPTM4B (ENSUPAG00010013282) #12	MATN2 (ENSUPAG00010013247) #13	ENSUPAG00010013235 ##15	ERICH5 (ENSUPAG00010013227) #16	RIDA (ENSUPAG00010013221) #17	POP1 (ENSUPAG00010013195) #18	NIPAL2 (ENSUPAG00010013172) #19	KCNS2 (ENSUPAG00010013167) #20	STK3 (ENSUPAG00010013132) #21	OSR2 (ENSUPAG00010013120) #22	ENSUPAG00010013114	ENSUPAG00010013107	ENSUPAG00010013097	ENSUPAG00010013083	VPS13B (ENSUPAG00010012963) #23	ENSUPAG00010012936 #24	RGS22 (ENSUPAG00010012884) #25	FBXO43 (ENSUPAG00010012872) #26	ENSUPAG00010012856 ##27	ENSUPAG00010012851 ##28	ENSUPAG00010012820 #28	RNF19A (ENSUPAG00010012809) #29	ANKRD46 (ENSUPAG00010012805) #30	ENSUPAG00010012795	SNX31 (ENSUPAG00010012764) #31
Squirrel	MODERN SPECIES	70	PTDSS1 (ENSSTOG00000008027)	SDC2 (ENSSTOG00000008050) #8	CPQ (ENSSTOG00000012223) #9	TSPYL5 (ENSSTOG00000005767) #10	MTDH (ENSSTOG00000005068) #11	LAPTM4B (ENSSTOG00000022846) #12	MATN2 (ENSSTOG00000011440) #13	ENSSTOG00000030813 ##15	ERICH5 (ENSSTOG00000011450) #16	ENSSTOG00000011452 #17	POP1 (ENSSTOG00000011455) #18	NIPAL2 (ENSSTOG00000000646) #19	KCNS2 (ENSSTOG00000024646) #20	STK3 (ENSSTOG00000000651) #21	ENSSTOG00000029048	OSR2 (ENSSTOG00000021263) #22	ENSSTOG00000027003	VPS13B (ENSSTOG00000015651) #23	COX6C (ENSSTOG00000015672) #24	RGS22 (ENSSTOG00000015674) #25	FBXO43 (ENSSTOG00000027663) #26	POLR2K (ENSSTOG00000006123) ##27	SPAG1 (ENSSTOG00000006135) #28	RNF19A (ENSSTOG00000006177) #29	ENSSTOG00000024280 #30	SNX31 (ENSSTOG00000016392) #31	PABPC1 (ENSSTOG00000016395) ##32	ENSSTOG00000034817	ENSSTOG00000023864 #33	ZNF706 (ENSSTOG00000022580) #35	ENSSTOG00000031885
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094.hb #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT01100000263484.B.b.b	ENSGT00390000007776	ENSGT00390000011748
Naked mole-rat female	MODERN SPECIES	13	ENSHGLG00000021132	ENSHGLG00000050956	ENSHGLG00000008700 #11	ENSHGLG00000041488 #12	MATN2 (ENSHGLG00000010275) #13	ENSHGLG00000010022	ENSHGLG00000033730	RPL30 (ENSHGLG00000034047) #15	ERICH5 (ENSHGLG00000005192) #16	HRSP12 (ENSHGLG00000035354) #17	POP1 (ENSHGLG00000006029) #18	ENSHGLG00000047572	NIPAL2 (ENSHGLG00000040382) #19	KCNS2 (ENSHGLG00000039128) #20	STK3 (ENSHGLG00000008473) #21	OSR2 (ENSHGLG00000011216) #22	VPS13B (ENSHGLG00000012549) #23	COX6C (ENSHGLG00000017404) #24	RGS22 (ENSHGLG00000018462) #25	ENSHGLG00000018671	FBXO43 (ENSHGLG00000017578) #26	ENSHGLG00000004285	SPAG1 (ENSHGLG00000004354) #28	RNF19A (ENSHGLG00000004447) #29	ENSHGLG00000004487	ANKRD46 (ENSHGLG00000004526) #30	SNX31 (ENSHGLG00000005963) #31	PABPC1 (ENSHGLG00000007713) ##32	ENSHGLG00000009040 #33	ENSHGLG00000033770 #35	ENSHGLG00000047813
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094.hb #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT01100000263484.B.b.b	ENSGT00390000007776	ENSGT00390000011748
Guinea pig	MODERN SPECIES		GDF6 (ENSCPOG00000010549)	UQCRB (ENSCPOG00000037355)	MTERF3 (ENSCPOG00000003487)	PTDSS1 (ENSCPOG00000003491)	SDC2 (ENSCPOG00000036427) #8	CPQ (ENSCPOG00000007260) #9	MTDH (ENSCPOG00000037219) #11	LAPTM4B (ENSCPOG00000020368) #12	MATN2 (ENSCPOG00000003062) #13	RPL30 (ENSCPOG00000030315) #15	RIDA (ENSCPOG00000036991) #17	POP1 (ENSCPOG00000002901) #18	NIPAL2 (ENSCPOG00000032021) #19	KCNS2 (ENSCPOG00000026156) #20	STK3 (ENSCPOG00000010689) #21	OSR2 (ENSCPOG00000020572) #22	ENSCPOG00000019380	VPS13B (ENSCPOG00000014447) #23	COX6C (ENSCPOG00000014456) #24	RGS22 (ENSCPOG00000002153) #25	FBXO43 (ENSCPOG00000002160) #26	POLR2K (ENSCPOG00000036717) #27	SPAG1 (ENSCPOG00000002162) #28	RNF19A (ENSCPOG00000007313) #29	ANKRD46 (ENSCPOG00000032374) #30	SNX31 (ENSCPOG00000012914) #31	PABPC1 (ENSCPOG00000012917) ##32	YWHAZ (ENSCPOG00000040522) ##33	ZNF706 (ENSCPOG00000037379) #35	TRHR (ENSCPOG00000011339)	NUDCD1 (ENSCPOG00000036228)
Hystricomorpha_b	ANCESTRAL SPECIES	25	ENSGT00390000005801	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.t.ab #15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00390000008918.b #27	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094.hb #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT01100000263484.B.b.b	ENSGT00390000007776	ENSGT00390000011748
Long-tailed chinchilla	MODERN SPECIES	124	PTDSS1 (ENSCLAG00000005033)	SDC2 (ENSCLAG00000006071) #8	CPQ (ENSCLAG00000007372) #9	TSPYL5 (ENSCLAG00000007761) #10	ENSCLAG00000007799	MTDH (ENSCLAG00000007884) #11	LAPTM4B (ENSCLAG00000005642) #12	MATN2 (ENSCLAG00000005911) #13	RPL30 (ENSCLAG00000006288) #15	ERICH5 (ENSCLAG00000006781) #16	RIDA (ENSCLAG00000006938) #17	POP1 (ENSCLAG00000007208) #18	NIPAL2 (ENSCLAG00000008008) #19	KCNS2 (ENSCLAG00000018060) #20	STK3 (ENSCLAG00000012018) #21	OSR2 (ENSCLAG00000012733) #22	VPS13B (ENSCLAG00000004590) #23	COX6C (ENSCLAG00000004170) #24	RGS22 (ENSCLAG00000004565) #25	FBXO43 (ENSCLAG00000007471) #26	POLR2K (ENSCLAG00000010033) #27	SPAG1 (ENSCLAG00000013379) #28	RNF19A (ENSCLAG00000015646) #29	ENSCLAG00000017008 #30	SNX31 (ENSCLAG00000011888) #31	PABPC1 (ENSCLAG00000009676) ##32	YWHAZ (ENSCLAG00000004303) ##33	ENSCLAG00000005116	ZNF706 (ENSCLAG00000005214) #35	TRHR (ENSCLAG00000005381)	NUDCD1 (ENSCLAG00000005542)
Degu	MODERN SPECIES	159					ENSODEG00000018842	ENSODEG00000018863	MTDH (ENSODEG00000003805) #11	LAPTM4B (ENSODEG00000003827) #12	MATN2 (ENSODEG00000003867) #13	ENSODEG00000003943 #15	RIDA (ENSODEG00000003956) #17	POP1 (ENSODEG00000003984) #18	NIPAL2 (ENSODEG00000004019) #19	KCNS2 (ENSODEG00000004047) #20	STK3 (ENSODEG00000004108) #21	OSR2 (ENSODEG00000004176) #22	ENSODEG00000004192	ENSODEG00000004228 #23	ENSODEG00000004243 #24	RGS22 (ENSODEG00000004270) #25	ENSODEG00000004346	ENSODEG00000004358 #27	SPAG1 (ENSODEG00000004385) #28	ENSODEG00000019080 #29	ENSODEG00000003147 #30	SNX31 (ENSODEG00000003171) #31	ENSODEG00000003229 ##32	YWHAZ (ENSODEG00000003295) ##33	ENSODEG00000003308 #35	ENSODEG00000003317	ENSODEG00000003325
Lagomorpha	ANCESTRAL SPECIES	20	ENSGT00530000063576.B	ENSGT00940000157222 #8	ENSGT00390000018110 #9	ENSGT00940000162862 #10	ENSGT00940000154181.a.d #11	ENSGT00940000153446.a.a #12	ENSGT00940000158008 #13	ENSGT00390000012138.a.b.s.a ##15	ENSGT00390000012138.a.b.s.b ##15	ENSGT00390000010783 #16	ENSGT00420000029792 #17	ENSGT00390000017478 #18	ENSGT00940000159321 #19	ENSGT00940000160344 #20	ENSGT00940000154984.C #21	ENSGT00940000160530 #22	ENSGT00940000154684 #23	ENSGT00940000162275 #24	ENSGT00500000044936 #25	ENSGT00530000063692.a #26	ENSGT00940000164643	ENSGT00940000154697.a.b #28	ENSGT00940000158703 #29	ENSGT00940000157094 #30	ENSGT00950000183212.A #31	ENSGT00940000153773.a.b.b ##32	ENSGT01090000260040.a.a.b ##33	ENSGT00390000003465.b.b #35	ENSGT00940000155788 #36	ENSGT00940000158862 #37	ENSGT00390000013305.a.b
Rabbit	MODERN SPECIES	14	ENSOCUG00000002662 #8	CPQ (ENSOCUG00000014385) #9	TSPYL5 (ENSOCUG00000009903) #10	ENSOCUG00000031706	MTDH (ENSOCUG00000011400) #11	LAPTM4B (ENSOCUG00000013689) #12	MATN2 (ENSOCUG00000017377) #13	RPL30 (ENSOCUG00000017386) ##15	ENSOCUG00000017391	ENSOCUG00000035058 #17	POP1 (ENSOCUG00000017400) #18	ENSOCUG00000017407 #19	KCNS2 (ENSOCUG00000004540) #20	STK3 (ENSOCUG00000004545) #21	ENSOCUG00000011503	OSR2 (ENSOCUG00000022383) #22	VPS13B (ENSOCUG00000008725) #23	ENSOCUG00000039216 #24	RGS22 (ENSOCUG00000031074) #25	FBXO43 (ENSOCUG00000008776) #26	ENSOCUG00000029376	SPAG1 (ENSOCUG00000001879) #28	RNF19A (ENSOCUG00000001892) #29	ANKRD46 (ENSOCUG00000009778) #30	SNX31 (ENSOCUG00000009781) #31	ENSOCUG00000004354 ##32	YWHAZ (ENSOCUG00000000734) ##33	ZNF706 (ENSOCUG00000008661) #35	GRHL2 (ENSOCUG00000004750) #36	NCALD (ENSOCUG00000009431) #37	RRM2B (ENSOCUG00000008545)
Pika	MODERN SPECIES	8865																OSR2 (ENSOPRG00000005325) #22
Tree shrew	MODERN SPECIES	1450																OSR2 (ENSTBEG00000001576) #22	VPS13B (ENSTBEG00000002114) #23	ENSTBEG00000005064	ENSTBEG00000005095