Glires	ANCESTRAL SPECIES	10	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197	ENSGT00940000155075.a.b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b #12	ENSGT00390000017146.a #13	ENSGT00390000016292.g.a #14	ENSGT00390000007560 #15	ENSGT00390000003444 #16	ENSGT00940000160787 #17	ENSGT00940000163297.c.b	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00910000148149	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197	ENSGT00940000155075.a.b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00390000016292.g.a.a #14	ENSGT00390000007560 #15	ENSGT00390000003444 #16	ENSGT00940000160787 #17	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00910000148149	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197	ENSGT00940000155075.a.b.`b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00390000016292.g.a.a #14	ENSGT00390000007560 #15	ENSGT00390000003444 #16	ENSGT00940000160787 #17	ENSGT00940000157481 #22	ENSGT00910000148149	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A	ENSGT00940000155920
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197	ENSGT00940000155075.a.b.`b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00390000016292.g.a.a #14	ENSGT00390000007560 #15	ENSGT00390000003444 #16	ENSGT00940000160787 #17	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00950000182899.B.b #26
Naked mole-rat female	MODERN SPECIES	31	NKRF (ENSHGLG00000013935) #7	SEPT6 (ENSHGLG00000045974) #8	ENSHGLG00000021365 #9	ENSHGLG00000040456 #10	ENSHGLG00000048082 #11	ENSHGLG00000019569 #12	UPF3B (ENSHGLG00000019582) #13	ENSHGLG00000040509 #14	ENSHGLG00000033450 #15	ENSHGLG00000039528 #16	ENSHGLG00000032810 #17	ENSHGLG00000040898 #18	ENSHGLG00000039888 #19	ENSHGLG00000049926 #20	ENSHGLG00000032932 #21	ZBTB33 (ENSHGLG00000000484) #22	TMEM255A (ENSHGLG00000000612) #23	ENSHGLG00000036791 #24	ATP1B4 (ENSHGLG00000048642) #25	ENSHGLG00000049851 #26	ENSHGLG00000000828 #27	ENSHGLG00000000956 #28	ENSHGLG00000035625 #29	ENSHGLG00000000073 #30	ENSHGLG00000032972 #31	ENSHGLG00000000099 #32	ENSHGLG00000049618 #33	ENSHGLG00000035272 #34	ENSHGLG00000039468 #35	ENSHGLG00000035517 #36	ENSHGLG00000020492 #37
Hystricomorpha_a	ANCESTRAL SPECIES	71																ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161322	ENSGT00940000162451	ENSGT00940000157297
Hystricomorpha_b	ANCESTRAL SPECIES	134																ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30
Long-tailed chinchilla	MODERN SPECIES	279																ZBTB33 (ENSCLAG00000000642) #22	TMEM255A (ENSCLAG00000000514) #23	ATP1B4 (ENSCLAG00000000421) #25	LAMP2 (ENSCLAG00000000358) #26	ENSCLAG00000000183 #27	MCTS1 (ENSCLAG00000000154) #28	C1GALT1C1 (ENSCLAG00000001782) #30
Degu	MODERN SPECIES	360																ZBTB33 (ENSODEG00000000429) #22	TMEM255A (ENSODEG00000000349) #23	ATP1B4 (ENSODEG00000001168) #25	LAMP2 (ENSODEG00000000917) #26	CUL4B (ENSODEG00000000736) #27	ENSODEG00000000920 #28	C1GALT1C1 (ENSODEG00000018585) #30
Guinea pig	MODERN SPECIES	69																ZBTB33 (ENSCPOG00000036142) #22	TMEM255A (ENSCPOG00000001714) #23	ATP1B4 (ENSCPOG00000038623) #25	LAMP2 (ENSCPOG00000012996) #26	CUL4B (ENSCPOG00000003522) #27	MCTS1 (ENSCPOG00000005502) #28	C1GALT1C1 (ENSCPOG00000020397) #30	ENSCPOG00000020749	GRIA3 (ENSCPOG00000003559)	THOC2 (ENSCPOG00000038670)	XIAP (ENSCPOG00000006316)	STAG2 (ENSCPOG00000039493)	ENSCPOG00000003621	SH2D1A (ENSCPOG00000039929)	TENM1 (ENSCPOG00000005914)	DCAF12L2 (ENSCPOG00000027086)
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197.t	ENSGT00940000155075.a.b.`b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.a.b.a.a.b ##12	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00390000016292.g.a.a #14	ENSGT00390000007560 #15	ENSGT00950000184857	ENSGT00940000160787 #17	ENSGT00940000157481 #22	ENSGT00910000148149	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01010000230270
Marmotini	ANCESTRAL SPECIES	63	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197.t	ENSGT00940000155075.a.b.`b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.a.b.a.a.b ##12	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00390000016292.g.a.a #14	ENSGT00390000007560 #15	ENSGT00950000184857	ENSGT00940000160787 #17	ENSGT00940000157481 #22	ENSGT00910000148149	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00390000012691.c.b.p	ENSGT00940000161768.A
Marmotini_b	ANCESTRAL SPECIES	78	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686	ENSGT00940000154400.b	ENSGT00390000002197.t	ENSGT00940000155075.a.b.`b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.a.b.a.a.b ##12	ENSGT00390000017146.a #13	ENSGT00390000016292.g.a.a #14	ENSGT00390000007560 #15	ENSGT00940000160787 #17	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00390000012691.c.b.p	ENSGT00940000161768.A	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b
Squirrel	MODERN SPECIES	79	ENSSTOG00000022238	LONRF3 (ENSSTOG00000015024)	PGRMC1 (ENSSTOG00000024047)	SLC25A43 (ENSSTOG00000004872)	ENSSTOG00000020438	STEEP1 (ENSSTOG00000011579)	UBE2A (ENSSTOG00000011583)	NKRF (ENSSTOG00000020483) #7	SEPTIN6 (ENSSTOG00000011593) #8	ENSSTOG00000030492	UPF3B (ENSSTOG00000001101) #13	RNF113A (ENSSTOG00000019866) #14	NDUFA1 (ENSSTOG00000020047) #15	NKAP (ENSSTOG00000001134) #17	ENSSTOG00000021587	ZBTB33 (ENSSTOG00000002304) #22	TMEM255A (ENSSTOG00000002306) #23	ATP1B4 (ENSSTOG00000002312) #25	ENSSTOG00000020706	LAMP2 (ENSSTOG00000021626) #26	CUL4B (ENSSTOG00000009208) #27	ENSSTOG00000011496 #28	C1GALT1C1 (ENSSTOG00000011499) #30	GRIA3 (ENSSTOG00000009114)	THOC2 (ENSSTOG00000009134)	XIAP (ENSSTOG00000003521)	STAG2 (ENSSTOG00000008577)	ENSSTOG00000032767	SH2D1A (ENSSTOG00000014003)	TENM1 (ENSSTOG00000000440)	ENSSTOG00000019526
Arctic ground squirrel	MODERN SPECIES	684																ZBTB33 (ENSUPAG00010003398) #22	TMEM255A (ENSUPAG00010003334) #23	ATP1B4 (ENSUPAG00010003321) #25	LAMP2 (ENSUPAG00010003280) #26	CUL4B (ENSUPAG00010000780) #27	MCTS1 (ENSUPAG00010000749) #28	ENSUPAG00010000684
Alpin marmot	MODERN SPECIES	54	SLC25A43 (ENSMMMG00000007207)	SLC25A5 (ENSMMMG00000007201)	ENSMMMG00000007184	UBE2A (ENSMMMG00000007093)	NKRF (ENSMMMG00000007091) #7	SEPTIN6 (ENSMMMG00000006734) #8	ENSMMMG00000006726	ENSMMMG00000006713 #12	UPF3B (ENSMMMG00000006683) #13	RNF113A (ENSMMMG00000006679) #14	NDUFA1 (ENSMMMG00000006672) #15	ENSMMMG00000006667	NKAP (ENSMMMG00000006657) #17	ENSMMMG00000006651	ENSMMMG00000006648	ZBTB33 (ENSMMMG00000006644) #22	ENSMMMG00000006640	TMEM255A (ENSMMMG00000006602) #23	ATP1B4 (ENSMMMG00000006573) #25	LAMP2 (ENSMMMG00000006559) #26	CUL4B (ENSMMMG00000006513) #27	MCTS1 (ENSMMMG00000006488) #28	C1GALT1C1 (ENSMMMG00000006481) #30	ENSMMMG00000006455	GRIA3 (ENSMMMG00000006362)	THOC2 (ENSMMMG00000006302)	XIAP (ENSMMMG00000006282)	ENSMMMG00000006273	STAG2 (ENSMMMG00000005858)	ENSMMMG00000005838	SH2D1A (ENSMMMG00000005794)
Eurasian red squirrel	MODERN SPECIES	156	STEEP1 (ENSSVLG00005015463)	ENSSVLG00005015206	NKRF (ENSSVLG00005015133) #7	SEPTIN6 (ENSSVLG00005015053) #8	SOWAHD (ENSSVLG00005015012) #11	ENSSVLG00005014976 ##12	UPF3B (ENSSVLG00005014902) #13	RNF113A (ENSSVLG00005014872) #14	NDUFA1 (ENSSVLG00005014840) #15	ENSSVLG00005014815	ENSSVLG00005014769	ENSSVLG00005014730	NKAP (ENSSVLG00005014692) #17	ENSSVLG00005014664	ENSSVLG00005014617	ZBTB33 (ENSSVLG00005014593) #22	TMEM255A (ENSSVLG00005014430) #23	ATP1B4 (ENSSVLG00005014140) #25	ENSSVLG00005014061	LAMP2 (ENSSVLG00005013943) #26	ENSSVLG00005013800	ENSSVLG00005013703 #27	MCTS1 (ENSSVLG00005013371) #28	ENSSVLG00005013289 #30	ENSSVLG00005013222	ENSSVLG00005013100	ENSSVLG00005013039	GRIA3 (ENSSVLG00005012602)	THOC2 (ENSSVLG00005012119)	ENSSVLG00005012039	XIAP (ENSSVLG00005011965)
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000154400.b	ENSGT00390000002197	ENSGT00940000155075.a.b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00390000016292.g.b ##14	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A	ENSGT00940000161322
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000154400.b.d	ENSGT00390000002197	ENSGT00940000155075.a.b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00390000016292.g.b ##14	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A	ENSGT00940000161322
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000160686	ENSGT00940000154400.b.d	ENSGT00390000002197	ENSGT00940000155075.a.b	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00520000058743	ENSGT01050000245028.A	ENSGT01050000245028.C	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145.e #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.a.a.b ##12	ENSGT00390000017146.a #13	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00520000058743	ENSGT01050000245028.A	ENSGT01050000245028.C	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354.a	ENSGT00920000149445.a #20	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145.e #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b
Cricetinae	ANCESTRAL SPECIES	29	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.a.a.b ##12	ENSGT00390000017146.a #13	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT01050000245028.A	ENSGT01050000245028.C	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354.a	ENSGT00920000149445.a #20	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145.e #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b
Chinese hamster chok1gshd	MODERN SPECIES	16	ENSCGRG00001021449 ##12	ENSCGRG00001006858 #13	Nkap (ENSCGRG00001013137) #17	NDUFA1 (ENSCGRG00001004710) #15	Rnf113a1 (ENSCGRG00001002251) #14	ENSCGRG00001012665	ENSCGRG00001015897	ENSCGRG00001016724	ENSCGRG00001009719	ENSCGRG00001019766 #19	ENSCGRG00001000411	ENSCGRG00001017971	ENSCGRG00001014368	ENSCGRG00001007488	Rhox12 (ENSCGRG00001000074) #20	Zbtb33 (ENSCGRG00001007690) #22	Tmem255a (ENSCGRG00001007359) #23	Atp1b4 (ENSCGRG00001004737) #25	Tex13c3 (ENSCGRG00001016863)	Lamp2 (ENSCGRG00001023305) #26	ENSCGRG00001000813 #27	Mcts1 (ENSCGRG00001022838) #28	C1galt1c1 (ENSCGRG00001004167) #30	6030498E09Rik (ENSCGRG00001016358)	ENSCGRG00001000441	Gria3 (ENSCGRG00001010277)	ENSCGRG00001008147	Thoc2 (ENSCGRG00001015509)	Xiap (ENSCGRG00001013410)	Stag2 (ENSCGRG00001008159)	Tex13d (ENSCGRG00001020574)
Golden Hamster	MODERN SPECIES	761	Steep1 (ENSMAUG00000019253)	Ube2a (ENSMAUG00000009245)	Nkrf (ENSMAUG00000021303) #7	Septin6 (ENSMAUG00000018038) #8	ENSMAUG00000010952	Upf3b (ENSMAUG00000008705) #13	Nkap (ENSMAUG00000020220) #17	Akap14 (ENSMAUG00000014839) #16	Ndufa1 (ENSMAUG00000000368) #15	ENSMAUG00000016012	ENSMAUG00000004552	ENSMAUG00000002213	Rhox10 (ENSMAUG00000017260)	ENSMAUG00000009678	Rhox12 (ENSMAUG00000012331) #20	Zbtb33 (ENSMAUG00000008177) #22	Tmem255a (ENSMAUG00000007801) #23	Atp1b4 (ENSMAUG00000016959) #25	Tex13c3 (ENSMAUG00000001959)	Lamp2 (ENSMAUG00000016372) #26	Cul4b (ENSMAUG00000002566) #27	Mcts1 (ENSMAUG00000000385) #28	C1galt1c1 (ENSMAUG00000015715) #30
Cricetidae_B	ANCESTRAL SPECIES	28												ENSGT00950000182952.C.xc.b	ENSGT00940000166354.b	ENSGT00940000154287.a.g.b	ENSGT00920000149445.a #20	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145.e #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b
Prairie vole	MODERN SPECIES	360	ENSMOCG00000021534	ENSMOCG00000014841	ENSMOCG00000003477	ENSMOCG00000000159	Mospd1 (ENSMOCG00000005632)	Fam122c (ENSMOCG00000010809)	Fam122b (ENSMOCG00000012360)	Plac1 (ENSMOCG00000007691)	Hprt (ENSMOCG00000020974)	ENSMOCG00000012929	Phf6 (ENSMOCG00000018706)	Ccdc160 (ENSMOCG00000015246)	ENSMOCG00000008464	Gpc3 (ENSMOCG00000019423)	Gpc4 (ENSMOCG00000012439)	Zbtb33 (ENSMOCG00000022606) #22	Tmem255a (ENSMOCG00000011328) #23	Atp1b4 (ENSMOCG00000013501) #25	Tex13c3 (ENSMOCG00000021332)	Lamp2 (ENSMOCG00000012759) #26	ENSMOCG00000017082 #27	Mcts1 (ENSMOCG00000018373) #28	ENSMOCG00000015671 #30	6030498E09Rik (ENSMOCG00000012857)	ENSMOCG00000009666	ENSMOCG00000020006	Gria3 (ENSMOCG00000002499)	ENSMOCG00000016033	Thoc2 (ENSMOCG00000009946)	Xiap (ENSMOCG00000022406)	Stag2 (ENSMOCG00000004951)
Northern American deer mouse	MODERN SPECIES	475	Amot (ENSPEMG00000009135)	ENSPEMG00000029369	ENSPEMG00000027327	ENSPEMG00000029813	Lrch2 (ENSPEMG00000023427)	ENSPEMG00000025081	Pls3 (ENSPEMG00000000739)	ENSPEMG00000027345	ENSPEMG00000029359	ENSPEMG00000017550	ENSPEMG00000025608	ENSPEMG00000002101	ENSPEMG00000026490	ENSPEMG00000013786	ENSPEMG00000017846 #20	Zbtb33 (ENSPEMG00000023331) #22	Tmem255a (ENSPEMG00000020511) #23	Atp1b4 (ENSPEMG00000026754) #25	Tex13c3 (ENSPEMG00000006117)	ENSPEMG00000030809 #26	Cul4b (ENSPEMG00000008902) #27	Mcts1 (ENSPEMG00000014914) #28	C1galt1c1 (ENSPEMG00000003943) #30	ENSPEMG00000026463	ENSPEMG00000025713	Gria3 (ENSPEMG00000020768)	Thoc2 (ENSPEMG00000007626)	Xiap (ENSPEMG00000020438)	ENSPEMG00000027841	Stag2 (ENSPEMG00000004299)	Sh2d1a (ENSPEMG00000010822)
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000157256 #7	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00520000058743	ENSGT01050000245028.A	ENSGT01050000245028.C	ENSGT00940000154287.a.g.b	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145.e #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b
Mus	ANCESTRAL SPECIES	9	ENSGT00390000017146.a #13	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00520000058743	ENSGT01050000245028.C	ENSGT01050000245028.A	ENSGT00700000106005	ENSGT00730000112198.a.a	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145.e #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00520000058743	ENSGT01050000245028.A.a.b	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145.e #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A.i
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000158026 #8	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00520000058743	ENSGT01050000245028.A.a.b	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145.e #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A.i
Mouse	MODERN SPECIES	37	Rhox3g (ENSMUSG00000080933)	Rhox2g (ENSMUSG00000079629)	Rhox4g (ENSMUSG00000079628)	Rhox3h (ENSMUSG00000071769)	Rhox2h (ENSMUSG00000079627)	Rhox5 (ENSMUSG00000095180)	Rhox6 (ENSMUSG00000006200)	Rhox7a (ENSMUSG00000071767)	Rhox8 (ENSMUSG00000064137) #19	Rhox7b (ENSMUSG00000079626)	Rhox9 (ENSMUSG00000068048)	Rhox10 (ENSMUSG00000053909)	Rhox11 (ENSMUSG00000051038)	Rhox12 (ENSMUSG00000071766) #20	Rhox13 (ENSMUSG00000050197) #19	Zbtb33 (ENSMUSG00000048047) #22	Tmem255a (ENSMUSG00000036502) #23	Atp1b4 (ENSMUSG00000016327) #25	Lamp2 (ENSMUSG00000016534) #26	Cul4b (ENSMUSG00000031095) #27	Mcts1 (ENSMUSG00000000355) #28	C1galt1c1 (ENSMUSG00000048970) #30	6030498E09Rik (ENSMUSG00000051361)	Gria3 (ENSMUSG00000001986)	Thoc2 (ENSMUSG00000037475)	Xiap (ENSMUSG00000025860)	Stag2 (ENSMUSG00000025862)	Tex13d (ENSMUSG00000105993)	Sh2d1a (ENSMUSG00000005696)	Tenm1 (ENSMUSG00000016150)	Tex13c1 (ENSMUSG00000078320)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00950000183003.a.a.a.b #11	ENSGT00390000014814.b.s #12	ENSGT00390000017146.a #13	ENSGT00940000160787 #17	ENSGT00390000003444 #16	ENSGT00390000007560 #15	ENSGT00390000016292.g.a.a #14	ENSGT00520000058743	ENSGT01050000245028.A.a.b	ENSGT00700000106005	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354	ENSGT00920000149445 #20	ENSGT00940000163385 #19	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145.e #30	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A.i
spretus	MODERN SPECIES	19	Rnf113a1 (MGP_SPRETEiJ_G0034156) #14	Gm9 (MGP_SPRETEiJ_G0034157)	Rhox1 (MGP_SPRETEiJ_G0034158)	MGP_SPRETEiJ_G0034159	MGP_SPRETEiJ_G0034160	MGP_SPRETEiJ_G0034161	MGP_SPRETEiJ_G0034162	MGP_SPRETEiJ_G0034163	MGP_SPRETEiJ_G0034164	MGP_SPRETEiJ_G0034165 #19	MGP_SPRETEiJ_G0034166	MGP_SPRETEiJ_G0034168	Rhox11 (MGP_SPRETEiJ_G0034169)	Rhox12 (MGP_SPRETEiJ_G0034170) #20	Rhox13 (MGP_SPRETEiJ_G0034171) #19	Zbtb33 (MGP_SPRETEiJ_G0034172) #22	Tmem255a (MGP_SPRETEiJ_G0034173) #23	Atp1b4 (MGP_SPRETEiJ_G0034174) #25	Lamp2 (MGP_SPRETEiJ_G0034175) #26	Cul4b (MGP_SPRETEiJ_G0034176) #27	Mcts1 (MGP_SPRETEiJ_G0034177) #28	C1galt1c1 (MGP_SPRETEiJ_G0034178) #30	6030498E09Rik (MGP_SPRETEiJ_G0034179)	Gria3 (MGP_SPRETEiJ_G0034180)	Thoc2 (MGP_SPRETEiJ_G0034181)	Xiap (MGP_SPRETEiJ_G0034182)	Stag2 (MGP_SPRETEiJ_G0034183)	Tex13d (MGP_SPRETEiJ_G0034184)	Tenm1 (MGP_SPRETEiJ_G0034186)	Tex13c1 (MGP_SPRETEiJ_G0034187)	Dcaf12l2 (MGP_SPRETEiJ_G0034188)
Steppe mouse	MODERN SPECIES	1673																Zbtb33 (ENSMSIG00000014952) #22	Tmem255a (ENSMSIG00000014958) #23
Ryukyu mouse	MODERN SPECIES	19	Septin6 (MGP_CAROLIEiJ_G0032996) #8	Sowahd (MGP_CAROLIEiJ_G0032997) #11	MGP_CAROLIEiJ_G0032998 ##12	Upf3b (MGP_CAROLIEiJ_G0032999) #13	Nkap (MGP_CAROLIEiJ_G0033000) #17	MGP_CAROLIEiJ_G0033001 #16	Gm9 (MGP_CAROLIEiJ_G0033002)	MGP_CAROLIEiJ_G0033003	MGP_CAROLIEiJ_G0033004	Rhox6 (MGP_CAROLIEiJ_G0033005)	MGP_CAROLIEiJ_G0033007	Rhox10 (MGP_CAROLIEiJ_G0033009)	Rhox11 (MGP_CAROLIEiJ_G0033010)	Rhox12 (MGP_CAROLIEiJ_G0033011) #20	Rhox13 (MGP_CAROLIEiJ_G0033012) #19	Zbtb33 (MGP_CAROLIEiJ_G0033013) #22	Tmem255a (MGP_CAROLIEiJ_G0033014) #23	MGP_CAROLIEiJ_G0033015	MGP_CAROLIEiJ_G0033016 #25	Lamp2 (MGP_CAROLIEiJ_G0033017) #26	Cul4b (MGP_CAROLIEiJ_G0033018) #27	Mcts1 (MGP_CAROLIEiJ_G0033019) #28	C1galt1c1 (MGP_CAROLIEiJ_G0033020) #30	6030498E09Rik (MGP_CAROLIEiJ_G0033021)	Gria3 (MGP_CAROLIEiJ_G0033022)	Thoc2 (MGP_CAROLIEiJ_G0033023)	Xiap (MGP_CAROLIEiJ_G0033024)	Stag2 (MGP_CAROLIEiJ_G0033025)	Tex13d (MGP_CAROLIEiJ_G0033026)	Tenm1 (MGP_CAROLIEiJ_G0033028)	Tex13c1 (MGP_CAROLIEiJ_G0033029)
Shrew mouse	MODERN SPECIES	23	Nkap (MGP_PahariEiJ_G0031544) #17	MGP_PahariEiJ_G0031545 #16	Ndufa1 (MGP_PahariEiJ_G0031546) #15	Rnf113a1 (MGP_PahariEiJ_G0031547) #14	MGP_PahariEiJ_G0031548	MGP_PahariEiJ_G0031549	MGP_PahariEiJ_G0031550	MGP_PahariEiJ_G0031551	MGP_PahariEiJ_G0031552 #19	MGP_PahariEiJ_G0031553	MGP_PahariEiJ_G0031554	Rhox10 (MGP_PahariEiJ_G0031555)	Rhox11 (MGP_PahariEiJ_G0031556)	Rhox12 (MGP_PahariEiJ_G0031557) #20	MGP_PahariEiJ_G0031558 #19	Zbtb33 (MGP_PahariEiJ_G0031559) #22	Tmem255a (MGP_PahariEiJ_G0031560) #23	Atp1b4 (MGP_PahariEiJ_G0031561) #25	MGP_PahariEiJ_G0031562	Lamp2 (MGP_PahariEiJ_G0031563) #26	MGP_PahariEiJ_G0031564 #27	Mcts1 (MGP_PahariEiJ_G0031565) #28	C1galt1c1 (MGP_PahariEiJ_G0031566) #30	6030498E09Rik (MGP_PahariEiJ_G0031567)	Gria3 (MGP_PahariEiJ_G0031568)	Thoc2 (MGP_PahariEiJ_G0031569)	Xiap (MGP_PahariEiJ_G0031570)	Stag2 (MGP_PahariEiJ_G0031571)	Tex13d (MGP_PahariEiJ_G0031572)	Sh2d1a (MGP_PahariEiJ_G0031573)	Tenm1 (MGP_PahariEiJ_G0031574)
Rat	MODERN SPECIES	46	LOC100364002 (ENSRNOG00000052383)	ENSRNOG00000070486	Rhox8 (ENSRNOG00000031534)	Rhox7 (ENSRNOG00000063283)	Rhox9 (ENSRNOG00000050457)	ENSRNOG00000070384	LOC691272 (ENSRNOG00000043229)	ENSRNOG00000065266	Btg1c (ENSRNOG00000032390)	RGD1566035 (ENSRNOG00000030645)	Btg1b (ENSRNOG00000047100)	Rhox10 (ENSRNOG00000040026)	Rhox11 (ENSRNOG00000028044)	Rhox12 (ENSRNOG00000040033) #20	Rhox13 (ENSRNOG00000028050) #19	Zbtb33 (ENSRNOG00000028899) #22	Tmem255a (ENSRNOG00000028085) #23	Atp1b4 (ENSRNOG00000007059) #25	Lamp2 (ENSRNOG00000000164) #26	LOC100360128 (ENSRNOG00000068620)	Cul4b (ENSRNOG00000002585) #27	Mcts1 (ENSRNOG00000002563) #28	C1galt1c1 (ENSRNOG00000069353) #30	LOC691215 (ENSRNOG00000028189)	RGD1560124 (ENSRNOG00000063278)	AABR07038676.1 (ENSRNOG00000028202)	ENSRNOG00000068749	RGD1563307 (ENSRNOG00000028984)	Gria3 (ENSRNOG00000007682)	Thoc2 (ENSRNOG00000007315)	Xiap (ENSRNOG00000006967)
Upper Galilee mountains blind mole rat	MODERN SPECIES	867																Zbtb33 (ENSNGAG00000009109) #22	Tmem255a (ENSNGAG00000019345) #23	Atp1b4 (ENSNGAG00000020181) #25	Lamp2 (ENSNGAG00000016144) #26	ENSNGAG00000001935	Cul4b (ENSNGAG00000013145) #27	Mcts1 (ENSNGAG00000010362) #28	C1galt1c1 (ENSNGAG00000003804) #30	6030498E09Rik (ENSNGAG00000016897)	ENSNGAG00000002467	Gria3 (ENSNGAG00000012449)	Thoc2 (ENSNGAG00000016184)	ENSNGAG00000000760	Xiap (ENSNGAG00000024097)	ENSNGAG00000022969	Stag2 (ENSNGAG00000002829)
Lesser Egyptian jerboa	MODERN SPECIES	53															ENSJJAG00000019780	Zbtb33 (ENSJJAG00000005119) #22	Tmem255a (ENSJJAG00000011698) #23	ENSJJAG00000024118	Atp1b4 (ENSJJAG00000012799) #25	Tex13c3 (ENSJJAG00000021107)	Lamp2 (ENSJJAG00000004795) #26	Cul4b (ENSJJAG00000012005) #27	Mcts1 (ENSJJAG00000000514) #28	ENSJJAG00000021787 #30	ENSJJAG00000008089	Gria3 (ENSJJAG00000011967)	Thoc2 (ENSJJAG00000017282)	Xiap (ENSJJAG00000006601)	ENSJJAG00000023301	Stag2 (ENSJJAG00000020364)	ENSJJAG00000012879
Kangaroo rat	MODERN SPECIES	357														ENSDORG00000024355	ENSDORG00000024775	Zbtb33 (ENSDORG00000023347) #22	Tmem255a (ENSDORG00000009805) #23	Atp1b4 (ENSDORG00000010554) #25	ENSDORG00000023555	Lamp2 (ENSDORG00000006433) #26	Cul4b (ENSDORG00000012005) #27	Mcts1 (ENSDORG00000027394) #28	C1galt1c1 (ENSDORG00000027468) #30	Gria3 (ENSDORG00000003484)	ENSDORG00000027486	ENSDORG00000027353	Xiap (ENSDORG00000010762)	Stag2 (ENSDORG00000003109)	Sh2d1a (ENSDORG00000012131)	Tenm1 (ENSDORG00000012135)	ENSDORG00000006515
Lagomorpha	ANCESTRAL SPECIES	51																ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a #25	ENSGT00940000161768.B	ENSGT00950000182899.B.b #26	ENSGT00940000155339 #27	ENSGT00550000074964.i.a #28	ENSGT00940000155145 #30	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A	ENSGT00940000161322
Rabbit	MODERN SPECIES	1401	CSTF2 (ENSOCUG00000010468)	ENSOCUG00000023695	SYTL4 (ENSOCUG00000011193)	SRPX2 (ENSOCUG00000011186)	TSPAN6 (ENSOCUG00000011184)	TNMD (ENSOCUG00000011179)	PCDH19 (ENSOCUG00000015865)	ENSOCUG00000003552	DIAPH2 (ENSOCUG00000007109)	ENSOCUG00000038471	ENSOCUG00000030699	ENSOCUG00000033765	ENSOCUG00000025252	ENSOCUG00000013944	ENSOCUG00000029262	ZBTB33 (ENSOCUG00000004331) #22	TMEM255A (ENSOCUG00000004334) #23	ATP1B4 (ENSOCUG00000003951) #25	LAMP2 (ENSOCUG00000024954) #26	ENSOCUG00000027764	CUL4B (ENSOCUG00000015633) #27	ENSOCUG00000014315 #28	C1GALT1C1 (ENSOCUG00000004781) #30	ENSOCUG00000027726	ENSOCUG00000021549	GRIA3 (ENSOCUG00000000315)	THOC2 (ENSOCUG00000005996)	ENSOCUG00000009878	STAG2 (ENSOCUG00000009879)	ENSOCUG00000022591	SH2D1A (ENSOCUG00000005012)