Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000158026	ENSGT00950000183003.a.a.a.b	ENSGT00390000014814.b.s	ENSGT00390000017146.a	ENSGT00940000160787	ENSGT00390000003444	ENSGT00390000007560	ENSGT00390000016292.g.a.a	ENSGT00520000058743	ENSGT01050000245028.A.a.b	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354	ENSGT00920000149445	ENSGT00940000163385	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964.i.a	ENSGT00940000155145.e	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A.i
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000158026	ENSGT00950000183003.a.a.a.b	ENSGT00390000014814.b.s	ENSGT00390000017146.a	ENSGT00940000160787	ENSGT00390000003444	ENSGT00390000007560	ENSGT00390000016292.g.a.a	ENSGT00520000058743	ENSGT01050000245028.A.a.b	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354	ENSGT00920000149445	ENSGT00940000163385	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964.i.a	ENSGT00940000155145.e	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A.i
Mus_C	ANCESTRAL SPECIES	27	ENSGT00950000183003.a.a.a.b	ENSGT00390000014814.b.s	ENSGT00390000017146.a	ENSGT00940000160787	ENSGT00390000003444	ENSGT00390000007560	ENSGT00390000016292.g.a.a	ENSGT00520000058743	ENSGT01050000245028.A.a.b	ENSGT00700000106005	ENSGT00950000182952.C.xc.b	ENSGT00940000154287.a.h	ENSGT00940000166354	ENSGT00920000149445	ENSGT00940000163385	ENSGT00940000157481 #22	ENSGT00940000160471 #23	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964.i.a	ENSGT00940000155145.e	ENSGT01050000245360	ENSGT00940000156123.b	ENSGT00710000106792.g	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000161768.A.j	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A.i
Steppe mouse	MODERN SPECIES	1673																Zbtb33 (ENSMSIG00000014952) #22	Tmem255a (ENSMSIG00000014958) #23
spretus	MODERN SPECIES	19	Rnf113a1 (MGP_SPRETEiJ_G0034156)	Gm9 (MGP_SPRETEiJ_G0034157)	Rhox1 (MGP_SPRETEiJ_G0034158)	MGP_SPRETEiJ_G0034159	MGP_SPRETEiJ_G0034160	MGP_SPRETEiJ_G0034161	MGP_SPRETEiJ_G0034162	MGP_SPRETEiJ_G0034163	MGP_SPRETEiJ_G0034164	MGP_SPRETEiJ_G0034165	MGP_SPRETEiJ_G0034166	MGP_SPRETEiJ_G0034168	Rhox11 (MGP_SPRETEiJ_G0034169)	Rhox12 (MGP_SPRETEiJ_G0034170)	Rhox13 (MGP_SPRETEiJ_G0034171)	Zbtb33 (MGP_SPRETEiJ_G0034172) #22	Tmem255a (MGP_SPRETEiJ_G0034173) #23	Atp1b4 (MGP_SPRETEiJ_G0034174)	Lamp2 (MGP_SPRETEiJ_G0034175)	Cul4b (MGP_SPRETEiJ_G0034176)	Mcts1 (MGP_SPRETEiJ_G0034177)	C1galt1c1 (MGP_SPRETEiJ_G0034178)	6030498E09Rik (MGP_SPRETEiJ_G0034179)	Gria3 (MGP_SPRETEiJ_G0034180)	Thoc2 (MGP_SPRETEiJ_G0034181)	Xiap (MGP_SPRETEiJ_G0034182)	Stag2 (MGP_SPRETEiJ_G0034183)	Tex13d (MGP_SPRETEiJ_G0034184)	Tenm1 (MGP_SPRETEiJ_G0034186)	Tex13c1 (MGP_SPRETEiJ_G0034187)	Dcaf12l2 (MGP_SPRETEiJ_G0034188)
Mouse	MODERN SPECIES	37	Rhox3g (ENSMUSG00000080933)	Rhox2g (ENSMUSG00000079629)	Rhox4g (ENSMUSG00000079628)	Rhox3h (ENSMUSG00000071769)	Rhox2h (ENSMUSG00000079627)	Rhox5 (ENSMUSG00000095180)	Rhox6 (ENSMUSG00000006200)	Rhox7a (ENSMUSG00000071767)	Rhox8 (ENSMUSG00000064137)	Rhox7b (ENSMUSG00000079626)	Rhox9 (ENSMUSG00000068048)	Rhox10 (ENSMUSG00000053909)	Rhox11 (ENSMUSG00000051038)	Rhox12 (ENSMUSG00000071766)	Rhox13 (ENSMUSG00000050197)	Zbtb33 (ENSMUSG00000048047) #22	Tmem255a (ENSMUSG00000036502) #23	Atp1b4 (ENSMUSG00000016327)	Lamp2 (ENSMUSG00000016534)	Cul4b (ENSMUSG00000031095)	Mcts1 (ENSMUSG00000000355)	C1galt1c1 (ENSMUSG00000048970)	6030498E09Rik (ENSMUSG00000051361)	Gria3 (ENSMUSG00000001986)	Thoc2 (ENSMUSG00000037475)	Xiap (ENSMUSG00000025860)	Stag2 (ENSMUSG00000025862)	Tex13d (ENSMUSG00000105993)	Sh2d1a (ENSMUSG00000005696)	Tenm1 (ENSMUSG00000016150)	Tex13c1 (ENSMUSG00000078320)
Ryukyu mouse	MODERN SPECIES	19	Septin6 (MGP_CAROLIEiJ_G0032996)	Sowahd (MGP_CAROLIEiJ_G0032997)	MGP_CAROLIEiJ_G0032998	Upf3b (MGP_CAROLIEiJ_G0032999)	Nkap (MGP_CAROLIEiJ_G0033000)	MGP_CAROLIEiJ_G0033001	Gm9 (MGP_CAROLIEiJ_G0033002)	MGP_CAROLIEiJ_G0033003	MGP_CAROLIEiJ_G0033004	Rhox6 (MGP_CAROLIEiJ_G0033005)	MGP_CAROLIEiJ_G0033007	Rhox10 (MGP_CAROLIEiJ_G0033009)	Rhox11 (MGP_CAROLIEiJ_G0033010)	Rhox12 (MGP_CAROLIEiJ_G0033011)	Rhox13 (MGP_CAROLIEiJ_G0033012)	Zbtb33 (MGP_CAROLIEiJ_G0033013) #22	Tmem255a (MGP_CAROLIEiJ_G0033014) #23	MGP_CAROLIEiJ_G0033015	MGP_CAROLIEiJ_G0033016	Lamp2 (MGP_CAROLIEiJ_G0033017)	Cul4b (MGP_CAROLIEiJ_G0033018)	Mcts1 (MGP_CAROLIEiJ_G0033019)	C1galt1c1 (MGP_CAROLIEiJ_G0033020)	6030498E09Rik (MGP_CAROLIEiJ_G0033021)	Gria3 (MGP_CAROLIEiJ_G0033022)	Thoc2 (MGP_CAROLIEiJ_G0033023)	Xiap (MGP_CAROLIEiJ_G0033024)	Stag2 (MGP_CAROLIEiJ_G0033025)	Tex13d (MGP_CAROLIEiJ_G0033026)	Tenm1 (MGP_CAROLIEiJ_G0033028)	Tex13c1 (MGP_CAROLIEiJ_G0033029)