Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT00950000183202.b #14	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #18	ENSGT00940000153676.b #19	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #23	ENSGT00940000155814 #24	ENSGT00940000162731	ENSGT00530000063715.b #25	ENSGT01050000244891.C.c.b #26	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00940000161898 #29	ENSGT00390000011737 #30	ENSGT00390000011439 #31	ENSGT00940000162114 #32	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT00950000183202.b #14	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #18	ENSGT00940000153676.b #19	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #23	ENSGT00940000155814 #24	ENSGT00940000162731	ENSGT00530000063715.b #25	ENSGT01050000244891.C.c.b #26	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00940000161898 #29	ENSGT00390000011737 #30	ENSGT00390000011439 #31	ENSGT00940000162114 #32	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36
Marmotini	ANCESTRAL SPECIES	29	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00950000183202.b #14	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #18	ENSGT00940000153676.b #19	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #23	ENSGT00940000155814 #24	ENSGT00940000162731	ENSGT00530000063715.b #25	ENSGT01050000244891.C.c.b #26	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00940000161898 #29	ENSGT00390000011737 #30	ENSGT00390000011439 #31	ENSGT00940000162114 #32	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36
Marmotini_b	ANCESTRAL SPECIES	110	ENSGT00940000159528 #7	ENSGT00390000011864 #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT00950000183202.b #14	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #18	ENSGT00940000153676.b #19	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #23	ENSGT00940000155814 #24	ENSGT00940000162731	ENSGT00530000063715.b #25	ENSGT01050000244891.C.c.b #26	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00940000161898 #29	ENSGT00390000011737 #30	ENSGT00390000011439 #31	ENSGT00940000162114 #32	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36
Squirrel	MODERN SPECIES	165	LRCH1 (ENSSTOG00000002840) #7	ESD (ENSSTOG00000002854) #8	HTR2A (ENSSTOG00000002863) #9	SUCLA2 (ENSSTOG00000003010) #10	NUDT15 (ENSSTOG00000001335) #11	MED4 (ENSSTOG00000001343) #12	ITM2B (ENSSTOG00000007270) #13	RB1 (ENSSTOG00000000927) #14	LPAR6 (ENSSTOG00000026961) #15	RCBTB2 (ENSSTOG00000014863) #16	FNDC3A (ENSSTOG00000011923) #17	MLNR (ENSSTOG00000011965) #18	CDADC1 (ENSSTOG00000011972) #19	ENSSTOG00000021927 #20	CAB39L (ENSSTOG00000002967) #21	SETDB2 (ENSSTOG00000002985) #22	PHF11 (ENSSTOG00000023483) #23	RCBTB1 (ENSSTOG00000028110) #24	EBPL (ENSSTOG00000002999) #25	KPNA3 (ENSSTOG00000003006) #26	SPRYD7 (ENSSTOG00000029895) #27	TRIM13 (ENSSTOG00000024506) #28	KCNRG (ENSSTOG00000001023) #29	DLEU7 (ENSSTOG00000022745) #30	RNASEH2B (ENSSTOG00000015126) #31	ENSSTOG00000007324 #32	C13orf42 (ENSSTOG00000033767) #33	FAM124A (ENSSTOG00000026616) #34	SERPINE3 (ENSSTOG00000026669) #35	INTS6 (ENSSTOG00000002524) #36	WDFY2 (ENSSTOG00000003365) #37
Arctic ground squirrel	MODERN SPECIES	124	LRCH1 (ENSUPAG00010004570) #7	ESD (ENSUPAG00010004501) #8	HTR2A (ENSUPAG00010004485) #9	SUCLA2 (ENSUPAG00010004459) #10	NUDT15 (ENSUPAG00010004450) #11	MED4 (ENSUPAG00010004439) #12	ITM2B (ENSUPAG00010004431) #13	LPAR6 (ENSUPAG00010004428) #15	RB1 (ENSUPAG00010004366) #14	RCBTB2 (ENSUPAG00010004306) #16	CYSLTR2 (ENSUPAG00010004301)	FNDC3A (ENSUPAG00010004258) #17	MLNR (ENSUPAG00010004242) #18	CDADC1 (ENSUPAG00010004175) #19	CAB39L (ENSUPAG00010004156) #21	SETDB2 (ENSUPAG00010004135) #22	PHF11 (ENSUPAG00010004112) #23	RCBTB1 (ENSUPAG00010004083) #24	ARL11 (ENSUPAG00010004075)	EBPL (ENSUPAG00010004067) #25	KPNA3 (ENSUPAG00010004046) #26	SPRYD7 (ENSUPAG00010004032) #27	TRIM13 (ENSUPAG00010004025) #28	KCNRG (ENSUPAG00010004022) #29	DLEU7 (ENSUPAG00010003981) #30	RNASEH2B (ENSUPAG00010003959) #31	ENSUPAG00010003902 #32	C13orf42 (ENSUPAG00010003886) #33	FAM124A (ENSUPAG00010003875) #34	SERPINE3 (ENSUPAG00010003855) #35	INTS6 (ENSUPAG00010003830) #36
Alpin marmot	MODERN SPECIES	13	ESD (ENSMMMG00000023189) #8	HTR2A (ENSMMMG00000023175) #9	SUCLA2 (ENSMMMG00000023163) #10	NUDT15 (ENSMMMG00000023158) #11	MED4 (ENSMMMG00000023156) #12	ITM2B (ENSMMMG00000023154) #13	LPAR6 (ENSMMMG00000023147) #15	RB1 (ENSMMMG00000023141) #14	RCBTB2 (ENSMMMG00000023136) #16	CYSLTR2 (ENSMMMG00000023126)	FNDC3A (ENSMMMG00000023109) #17	ENSMMMG00000023108	ENSMMMG00000023106 #20	CDADC1 (ENSMMMG00000023083) #19	ENSMMMG00000023071 #21	SETDB2 (ENSMMMG00000023069) #22	PHF11 (ENSMMMG00000023063) #23	RCBTB1 (ENSMMMG00000023061) #24	ARL11 (ENSMMMG00000023058)	EBPL (ENSMMMG00000023057) #25	KPNA3 (ENSMMMG00000023052) #26	SPRYD7 (ENSMMMG00000023040) #27	TRIM13 (ENSMMMG00000023039) #28	KCNRG (ENSMMMG00000023037) #29	DLEU7 (ENSMMMG00000022997) #30	RNASEH2B (ENSMMMG00000022994) #31	ENSMMMG00000022990 #32	C13orf42 (ENSMMMG00000022978) #33	FAM124A (ENSMMMG00000022976) #34	SERPINE3 (ENSMMMG00000022966) #35	INTS6 (ENSMMMG00000022911) #36
Eurasian red squirrel	MODERN SPECIES	13	SUCLA2 (ENSSVLG00005001944) #10	ENSSVLG00005001974 #11	MED4 (ENSSVLG00005001989) #12	ITM2B (ENSSVLG00005002020) #13	ENSSVLG00005002047	RB1 (ENSSVLG00005002082) #14	LPAR6 (ENSSVLG00005002170) #15	RCBTB2 (ENSSVLG00005002211) #16	ENSSVLG00005002284	ENSSVLG00005002299 #17	ENSSVLG00005002325 #17	MLNR (ENSSVLG00005002363) #18	CDADC1 (ENSSVLG00005002377) #19	ENSSVLG00005002409	CAB39L (ENSSVLG00005002440) #21	SETDB2 (ENSSVLG00005002488) #22	ENSSVLG00005002542 #23	RCBTB1 (ENSSVLG00005002559) #24	ARL11 (ENSSVLG00005002576)	EBPL (ENSSVLG00005002591) #25	KPNA3 (ENSSVLG00005002614) #26	SPRYD7 (ENSSVLG00005002639) #27	ENSSVLG00005002671	ENSSVLG00005002704 #29	TRIM13 (ENSSVLG00005002735) #28	ENSSVLG00005002745 #29	ENSSVLG00005002766	ENSSVLG00005002781	ENSSVLG00005002796	DLEU7 (ENSSVLG00005002820) #30	RNASEH2B (ENSSVLG00005002889) #31
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00940000159528 #7	ENSGT00390000011864.y #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT00950000183202.b #14	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #18	ENSGT00940000153676.b #19	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #23	ENSGT00940000155814 #24	ENSGT00940000162731	ENSGT00530000063715.b #25	ENSGT01050000244891.C.c.b #26	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00390000011737 #30	ENSGT00390000011439 #31	ENSGT00940000162114 #32	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36	ENSGT00940000158527 #37
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00940000159528 #7	ENSGT00390000011864.y #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT00950000183202.b #14	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #18	ENSGT00940000153676.b #19	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #23	ENSGT00940000155814 #24	ENSGT00940000162731	ENSGT00530000063715.b #25	ENSGT01050000244891.C.c.b #26	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00390000011737 #30	ENSGT00390000011439 #31	ENSGT00940000162114 #32	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36	ENSGT00940000158527 #37
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00940000159528 #7	ENSGT00390000011864.y #8	ENSGT01050000244937.a.a #9	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT00950000183202.b #14	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #18	ENSGT00940000153676.b #19	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #23	ENSGT00940000155814 #24	ENSGT00940000162731	ENSGT00530000063715.b #25	ENSGT01050000244891.C.c.b #26	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00390000011737 #30	ENSGT00390000011439 #31	ENSGT00940000162114 #32	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36	ENSGT00940000158527 #37
Long-tailed chinchilla	MODERN SPECIES	138	ESD (ENSCLAG00000005889) #8	HTR2A (ENSCLAG00000006315) #9	ENSCLAG00000010853	SUCLA2 (ENSCLAG00000007422) #10	NUDT15 (ENSCLAG00000008172) #11	MED4 (ENSCLAG00000008512) #12	ITM2B (ENSCLAG00000006439) #13	RB1 (ENSCLAG00000006971) #14	LPAR6 (ENSCLAG00000017673) #15	RCBTB2 (ENSCLAG00000008746) #16	CYSLTR2 (ENSCLAG00000004826)	FNDC3A (ENSCLAG00000004945) #17	MLNR (ENSCLAG00000005338) #18	CDADC1 (ENSCLAG00000003253) #19	CAB39L (ENSCLAG00000006518) #21	SETDB2 (ENSCLAG00000007348) #22	ENSCLAG00000009026	PHF11 (ENSCLAG00000003316) #23	RCBTB1 (ENSCLAG00000004132) #24	ARL11 (ENSCLAG00000005195)	EBPL (ENSCLAG00000003551) #25	KPNA3 (ENSCLAG00000003858) #26	SPRYD7 (ENSCLAG00000005061) #27	TRIM13 (ENSCLAG00000005696) #28	DLEU7 (ENSCLAG00000005848) #30	RNASEH2B (ENSCLAG00000003517) #31	C13orf42 (ENSCLAG00000003677) #33	FAM124A (ENSCLAG00000003727) #34	SERPINE3 (ENSCLAG00000003869) #35	INTS6 (ENSCLAG00000004155) #36	ENSCLAG00000003960
Degu	MODERN SPECIES	92	NUDT15 (ENSODEG00000006598) #11	ENSODEG00000006829 #12	ENSODEG00000005765 #13	RB1 (ENSODEG00000007075) #14	LPAR6 (ENSODEG00000019536) #15	RCBTB2 (ENSODEG00000007840) #16	ENSODEG00000006804	ENSODEG00000019363	CYSLTR2 (ENSODEG00000005345)	ENSODEG00000005498	FNDC3A (ENSODEG00000005882) #17	ENSODEG00000019344	MLNR (ENSODEG00000005947) #18	CDADC1 (ENSODEG00000005355) #19	CAB39L (ENSODEG00000005405) #21	SETDB2 (ENSODEG00000005653) #22	RCBTB1 (ENSODEG00000009239) #24	EBPL (ENSODEG00000006022) #25	ENSODEG00000006427 #26	ENSODEG00000005796	ENSODEG00000006101 #27	TRIM13 (ENSODEG00000005624) #28	ENSODEG00000019247	ENSODEG00000006325	ENSODEG00000006650	DLEU7 (ENSODEG00000006775) #30	ENSODEG00000006793 #31	ENSODEG00000007411 #32	C13orf42 (ENSODEG00000005880) #33	ENSODEG00000006175	FAM124A (ENSODEG00000006565) #34
Guinea pig	MODERN SPECIES	6	LRCH1 (ENSCPOG00000011077) #7	ESD (ENSCPOG00000011089) #8	HTR2A (ENSCPOG00000038918) #9	SUCLA2 (ENSCPOG00000014961) #10	ENSCPOG00000038770 #11	ENSCPOG00000015058 #11	MED4 (ENSCPOG00000039834) #12	ITM2B (ENSCPOG00000039088) #13	RB1 (ENSCPOG00000008683) #14	LPAR6 (ENSCPOG00000036002) #15	RCBTB2 (ENSCPOG00000008702) #16	CYSLTR2 (ENSCPOG00000001597)	FNDC3A (ENSCPOG00000003704) #17	CDADC1 (ENSCPOG00000003715) #19	CAB39L (ENSCPOG00000003721) #21	SETDB2 (ENSCPOG00000002194) #22	PHF11 (ENSCPOG00000002197) #23	RCBTB1 (ENSCPOG00000002199) #24	ARL11 (ENSCPOG00000040608)	EBPL (ENSCPOG00000038144) #25	KPNA3 (ENSCPOG00000004628) #26	SPRYD7 (ENSCPOG00000032352) #27	TRIM13 (ENSCPOG00000001929) #28	DLEU7 (ENSCPOG00000030950) #30	RNASEH2B (ENSCPOG00000032527) #31	ENSCPOG00000009047 #32	C13orf42 (ENSCPOG00000034338) #33
Naked mole-rat female	MODERN SPECIES	2	ENSHGLG00000006869 #10	NUDT15 (ENSHGLG00000037073) #11	MED4 (ENSHGLG00000013271) #12	ENSHGLG00000013614 #13	ENSHGLG00000012986	RB1 (ENSHGLG00000003581) #14	ENSHGLG00000037766	RCBTB2 (ENSHGLG00000003102) #16	ENSHGLG00000043759	ENSHGLG00000034874	ENSHGLG00000011200	FNDC3A (ENSHGLG00000007427) #17	MLNR (ENSHGLG00000006363) #18	CDADC1 (ENSHGLG00000007415) #19	CAB39L (ENSHGLG00000005677) #21	SETDB2 (ENSHGLG00000003820) #22	PHF11 (ENSHGLG00000003303) #23	RCBTB1 (ENSHGLG00000003006) #24	ARL11 (ENSHGLG00000031866)	EBPL (ENSHGLG00000005678) #25	KPNA3 (ENSHGLG00000004176) #26	ENSHGLG00000047604	SPRYD7 (ENSHGLG00000003741) #27	TRIM13 (ENSHGLG00000037520) #28	ENSHGLG00000020485	DLEU7 (ENSHGLG00000046292) #30	RNASEH2B (ENSHGLG00000007730) #31	ENSHGLG00000004840 #32	C13orf42 (ENSHGLG00000004742) #33	ENSHGLG00000039671	FAM124A (ENSHGLG00000039693) #34