Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00940000159528	ENSGT00390000011864.y	ENSGT01050000244937.a.a	ENSGT00390000010170.a.b	ENSGT00390000003338 #7	ENSGT00390000012063 #8	ENSGT00950000183115.b.a #9	ENSGT00950000183202.b #10	ENSGT01040000240444.A.a.a.a.a #11	ENSGT00940000158925 #12	ENSGT01100000263536.B.c.a #15	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #19	ENSGT00940000153676.b #20	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a	ENSGT00940000155814 #23	ENSGT00940000162731	ENSGT00530000063715.b #24	ENSGT01050000244891.C.c.b #25	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00390000011737 #32	ENSGT00390000011439 #33	ENSGT00940000162114 #34	ENSGT00390000003838 #35	ENSGT00590000083134.a.a #37	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00940000159528	ENSGT00390000011864.y	ENSGT01050000244937.a.a	ENSGT00390000010170.a.b	ENSGT00390000003338 #7	ENSGT00390000012063 #8	ENSGT00950000183115.b.a #9	ENSGT00950000183202.b #10	ENSGT01040000240444.A.a.a.a.a #11	ENSGT00940000158925 #12	ENSGT01100000263536.B.c.a #15	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #19	ENSGT00940000153676.b #20	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a	ENSGT00940000155814 #23	ENSGT00940000162731	ENSGT00530000063715.b #24	ENSGT01050000244891.C.c.b #25	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00390000011737 #32	ENSGT00390000011439 #33	ENSGT00940000162114 #34	ENSGT00390000003838 #35	ENSGT00590000083134.a.a #37	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00940000159528	ENSGT00390000011864.y	ENSGT01050000244937.a.a	ENSGT00390000010170.a.b	ENSGT00390000003338 #7	ENSGT00390000012063 #8	ENSGT00950000183115.b.a #9	ENSGT00950000183202.b #10	ENSGT01040000240444.A.a.a.a.a #11	ENSGT00940000158925 #12	ENSGT01100000263536.B.c.a #15	ENSGT00940000159319 #17	ENSGT01100000263484.C.a #19	ENSGT00940000153676.b #20	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a	ENSGT00940000155814 #23	ENSGT00940000162731	ENSGT00530000063715.b #24	ENSGT01050000244891.C.c.b #25	ENSGT00390000011048 #27	ENSGT00940000159715 #28	ENSGT00390000011737 #32	ENSGT00390000011439 #33	ENSGT00940000162114 #34	ENSGT00390000003838 #35	ENSGT00590000083134.a.a #37	ENSGT00940000160941	ENSGT00390000016655.a.a.b	ENSGT00940000158527
Degu	MODERN SPECIES	92	NUDT15 (ENSODEG00000006598) #7	ENSODEG00000006829 #8	ENSODEG00000005765 #9	RB1 (ENSODEG00000007075) #10	LPAR6 (ENSODEG00000019536) #11	RCBTB2 (ENSODEG00000007840) #12	ENSODEG00000006804 #13	ENSODEG00000019363 #14	CYSLTR2 (ENSODEG00000005345) #15	ENSODEG00000005498 #16	FNDC3A (ENSODEG00000005882) #17	ENSODEG00000019344 #18	MLNR (ENSODEG00000005947) #19	CDADC1 (ENSODEG00000005355) #20	CAB39L (ENSODEG00000005405) #21	SETDB2 (ENSODEG00000005653) #22	RCBTB1 (ENSODEG00000009239) #23	EBPL (ENSODEG00000006022) #24	ENSODEG00000006427 #25	ENSODEG00000005796 #26	ENSODEG00000006101 #27	TRIM13 (ENSODEG00000005624) #28	ENSODEG00000019247 #29	ENSODEG00000006325 #30	ENSODEG00000006650 #31	DLEU7 (ENSODEG00000006775) #32	ENSODEG00000006793 #33	ENSODEG00000007411 #34	C13orf42 (ENSODEG00000005880) #35	ENSODEG00000006175 #36	FAM124A (ENSODEG00000006565) #37
Long-tailed chinchilla	MODERN SPECIES	138	ESD (ENSCLAG00000005889)	HTR2A (ENSCLAG00000006315)	ENSCLAG00000010853	SUCLA2 (ENSCLAG00000007422)	NUDT15 (ENSCLAG00000008172) #7	MED4 (ENSCLAG00000008512) #8	ITM2B (ENSCLAG00000006439) #9	RB1 (ENSCLAG00000006971) #10	LPAR6 (ENSCLAG00000017673) #11	RCBTB2 (ENSCLAG00000008746) #12	CYSLTR2 (ENSCLAG00000004826) #15	FNDC3A (ENSCLAG00000004945) #17	MLNR (ENSCLAG00000005338) #19	CDADC1 (ENSCLAG00000003253) #20	CAB39L (ENSCLAG00000006518) #21	SETDB2 (ENSCLAG00000007348) #22	ENSCLAG00000009026	PHF11 (ENSCLAG00000003316)	RCBTB1 (ENSCLAG00000004132) #23	ARL11 (ENSCLAG00000005195)	EBPL (ENSCLAG00000003551) #24	KPNA3 (ENSCLAG00000003858) #25	SPRYD7 (ENSCLAG00000005061) #27	TRIM13 (ENSCLAG00000005696) #28	DLEU7 (ENSCLAG00000005848) #32	RNASEH2B (ENSCLAG00000003517) #33	C13orf42 (ENSCLAG00000003677) #35	FAM124A (ENSCLAG00000003727) #37	SERPINE3 (ENSCLAG00000003869)	INTS6 (ENSCLAG00000004155)	ENSCLAG00000003960
Guinea pig	MODERN SPECIES	6	LRCH1 (ENSCPOG00000011077)	ESD (ENSCPOG00000011089)	HTR2A (ENSCPOG00000038918)	SUCLA2 (ENSCPOG00000014961)	ENSCPOG00000038770 #7	ENSCPOG00000015058 #7	MED4 (ENSCPOG00000039834) #8	ITM2B (ENSCPOG00000039088) #9	RB1 (ENSCPOG00000008683) #10	LPAR6 (ENSCPOG00000036002) #11	RCBTB2 (ENSCPOG00000008702) #12	CYSLTR2 (ENSCPOG00000001597) #15	FNDC3A (ENSCPOG00000003704) #17	CDADC1 (ENSCPOG00000003715) #20	CAB39L (ENSCPOG00000003721) #21	SETDB2 (ENSCPOG00000002194) #22	PHF11 (ENSCPOG00000002197)	RCBTB1 (ENSCPOG00000002199) #23	ARL11 (ENSCPOG00000040608)	EBPL (ENSCPOG00000038144) #24	KPNA3 (ENSCPOG00000004628) #25	SPRYD7 (ENSCPOG00000032352) #27	TRIM13 (ENSCPOG00000001929) #28	DLEU7 (ENSCPOG00000030950) #32	RNASEH2B (ENSCPOG00000032527) #33	ENSCPOG00000009047 #34	C13orf42 (ENSCPOG00000034338) #35
Naked mole-rat female	MODERN SPECIES	2	ENSHGLG00000006869	NUDT15 (ENSHGLG00000037073) #7	MED4 (ENSHGLG00000013271) #8	ENSHGLG00000013614 #9	ENSHGLG00000012986	RB1 (ENSHGLG00000003581) #10	ENSHGLG00000037766	RCBTB2 (ENSHGLG00000003102) #12	ENSHGLG00000043759	ENSHGLG00000034874	ENSHGLG00000011200	FNDC3A (ENSHGLG00000007427) #17	MLNR (ENSHGLG00000006363) #19	CDADC1 (ENSHGLG00000007415) #20	CAB39L (ENSHGLG00000005677) #21	SETDB2 (ENSHGLG00000003820) #22	PHF11 (ENSHGLG00000003303)	RCBTB1 (ENSHGLG00000003006) #23	ARL11 (ENSHGLG00000031866)	EBPL (ENSHGLG00000005678) #24	KPNA3 (ENSHGLG00000004176) #25	ENSHGLG00000047604	SPRYD7 (ENSHGLG00000003741) #27	TRIM13 (ENSHGLG00000037520) #28	ENSHGLG00000020485	DLEU7 (ENSHGLG00000046292) #32	RNASEH2B (ENSHGLG00000007730) #33	ENSHGLG00000004840 #34	C13orf42 (ENSHGLG00000004742) #35	ENSHGLG00000039671	FAM124A (ENSHGLG00000039693) #37