Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00940000159528	ENSGT00390000011864.y #7	ENSGT01050000244937.a.a #8	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT00950000183202.b #14	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a #17	ENSGT00940000159319 #18	ENSGT01100000263484.C.a #19	ENSGT00940000153676.b #20	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #24	ENSGT00940000155814 #25	ENSGT00940000162731 #26	ENSGT00530000063715.b #27	ENSGT01050000244891.C.c.b #28	ENSGT00390000011048 #29	ENSGT00940000159715 #30	ENSGT00390000011737 #31	ENSGT00390000011439 #32	ENSGT00940000162114	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36	ENSGT00940000158527
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00940000159528	ENSGT00390000011864.y #7	ENSGT01050000244937.a.a #8	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT00950000183202.b #14	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a #17	ENSGT00940000159319 #18	ENSGT01100000263484.C.a #19	ENSGT00940000153676.b #20	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #24	ENSGT00940000155814 #25	ENSGT00940000162731 #26	ENSGT00530000063715.b #27	ENSGT01050000244891.C.c.b #28	ENSGT00390000011048 #29	ENSGT00940000159715 #30	ENSGT00390000011737 #31	ENSGT00390000011439 #32	ENSGT00940000162114	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36	ENSGT00940000158527
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00940000159528	ENSGT00390000011864.y #7	ENSGT01050000244937.a.a #8	ENSGT00390000010170.a.b #10	ENSGT00390000003338 #11	ENSGT00390000012063 #12	ENSGT00950000183115.b.a #13	ENSGT00950000183202.b #14	ENSGT01040000240444.A.a.a.a.a #15	ENSGT00940000158925 #16	ENSGT01100000263536.B.c.a #17	ENSGT00940000159319 #18	ENSGT01100000263484.C.a #19	ENSGT00940000153676.b #20	ENSGT00390000004360.a.b.a.a.b #21	ENSGT00940000158209 #22	ENSGT00950000182865.b.a.b.b.b.a #24	ENSGT00940000155814 #25	ENSGT00940000162731 #26	ENSGT00530000063715.b #27	ENSGT01050000244891.C.c.b #28	ENSGT00390000011048 #29	ENSGT00940000159715 #30	ENSGT00390000011737 #31	ENSGT00390000011439 #32	ENSGT00940000162114	ENSGT00390000003838 #33	ENSGT00590000083134.a.a #34	ENSGT00940000160941 #35	ENSGT00390000016655.a.a.b #36	ENSGT00940000158527
Long-tailed chinchilla	MODERN SPECIES	138	ESD (ENSCLAG00000005889) #7	HTR2A (ENSCLAG00000006315) #8	ENSCLAG00000010853 #9	SUCLA2 (ENSCLAG00000007422) #10	NUDT15 (ENSCLAG00000008172) #11	MED4 (ENSCLAG00000008512) #12	ITM2B (ENSCLAG00000006439) #13	RB1 (ENSCLAG00000006971) #14	LPAR6 (ENSCLAG00000017673) #15	RCBTB2 (ENSCLAG00000008746) #16	CYSLTR2 (ENSCLAG00000004826) #17	FNDC3A (ENSCLAG00000004945) #18	MLNR (ENSCLAG00000005338) #19	CDADC1 (ENSCLAG00000003253) #20	CAB39L (ENSCLAG00000006518) #21	SETDB2 (ENSCLAG00000007348) #22	ENSCLAG00000009026 #23	PHF11 (ENSCLAG00000003316) #24	RCBTB1 (ENSCLAG00000004132) #25	ARL11 (ENSCLAG00000005195) #26	EBPL (ENSCLAG00000003551) #27	KPNA3 (ENSCLAG00000003858) #28	SPRYD7 (ENSCLAG00000005061) #29	TRIM13 (ENSCLAG00000005696) #30	DLEU7 (ENSCLAG00000005848) #31	RNASEH2B (ENSCLAG00000003517) #32	C13orf42 (ENSCLAG00000003677) #33	FAM124A (ENSCLAG00000003727) #34	SERPINE3 (ENSCLAG00000003869) #35	INTS6 (ENSCLAG00000004155) #36	ENSCLAG00000003960 #37
Degu	MODERN SPECIES	92	NUDT15 (ENSODEG00000006598) #11	ENSODEG00000006829 #12	ENSODEG00000005765 #13	RB1 (ENSODEG00000007075) #14	LPAR6 (ENSODEG00000019536) #15	RCBTB2 (ENSODEG00000007840) #16	ENSODEG00000006804	ENSODEG00000019363	CYSLTR2 (ENSODEG00000005345) #17	ENSODEG00000005498	FNDC3A (ENSODEG00000005882) #18	ENSODEG00000019344	MLNR (ENSODEG00000005947) #19	CDADC1 (ENSODEG00000005355) #20	CAB39L (ENSODEG00000005405) #21	SETDB2 (ENSODEG00000005653) #22	RCBTB1 (ENSODEG00000009239) #25	EBPL (ENSODEG00000006022) #27	ENSODEG00000006427 #28	ENSODEG00000005796	ENSODEG00000006101 #29	TRIM13 (ENSODEG00000005624) #30	ENSODEG00000019247	ENSODEG00000006325	ENSODEG00000006650	DLEU7 (ENSODEG00000006775) #31	ENSODEG00000006793 #32	ENSODEG00000007411	C13orf42 (ENSODEG00000005880) #33	ENSODEG00000006175	FAM124A (ENSODEG00000006565) #34
Guinea pig	MODERN SPECIES	6	LRCH1 (ENSCPOG00000011077)	ESD (ENSCPOG00000011089) #7	HTR2A (ENSCPOG00000038918) #8	SUCLA2 (ENSCPOG00000014961) #10	ENSCPOG00000038770 #11	ENSCPOG00000015058 #11	MED4 (ENSCPOG00000039834) #12	ITM2B (ENSCPOG00000039088) #13	RB1 (ENSCPOG00000008683) #14	LPAR6 (ENSCPOG00000036002) #15	RCBTB2 (ENSCPOG00000008702) #16	CYSLTR2 (ENSCPOG00000001597) #17	FNDC3A (ENSCPOG00000003704) #18	CDADC1 (ENSCPOG00000003715) #20	CAB39L (ENSCPOG00000003721) #21	SETDB2 (ENSCPOG00000002194) #22	PHF11 (ENSCPOG00000002197) #24	RCBTB1 (ENSCPOG00000002199) #25	ARL11 (ENSCPOG00000040608) #26	EBPL (ENSCPOG00000038144) #27	KPNA3 (ENSCPOG00000004628) #28	SPRYD7 (ENSCPOG00000032352) #29	TRIM13 (ENSCPOG00000001929) #30	DLEU7 (ENSCPOG00000030950) #31	RNASEH2B (ENSCPOG00000032527) #32	ENSCPOG00000009047	C13orf42 (ENSCPOG00000034338) #33
Naked mole-rat female	MODERN SPECIES	2	ENSHGLG00000006869 #10	NUDT15 (ENSHGLG00000037073) #11	MED4 (ENSHGLG00000013271) #12	ENSHGLG00000013614 #13	ENSHGLG00000012986	RB1 (ENSHGLG00000003581) #14	ENSHGLG00000037766	RCBTB2 (ENSHGLG00000003102) #16	ENSHGLG00000043759	ENSHGLG00000034874	ENSHGLG00000011200	FNDC3A (ENSHGLG00000007427) #18	MLNR (ENSHGLG00000006363) #19	CDADC1 (ENSHGLG00000007415) #20	CAB39L (ENSHGLG00000005677) #21	SETDB2 (ENSHGLG00000003820) #22	PHF11 (ENSHGLG00000003303) #24	RCBTB1 (ENSHGLG00000003006) #25	ARL11 (ENSHGLG00000031866) #26	EBPL (ENSHGLG00000005678) #27	KPNA3 (ENSHGLG00000004176) #28	ENSHGLG00000047604	SPRYD7 (ENSHGLG00000003741) #29	TRIM13 (ENSHGLG00000037520) #30	ENSHGLG00000020485	DLEU7 (ENSHGLG00000046292) #31	RNASEH2B (ENSHGLG00000007730) #32	ENSHGLG00000004840	C13orf42 (ENSHGLG00000004742) #33	ENSHGLG00000039671	FAM124A (ENSHGLG00000039693) #34