Sarcopterygii	ANCESTRAL SPECIES	48	ENSGT00940000157943.a.a	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789 #17	ENSGT00950000182969.B.c.a.a	ENSGT00940000155258 #22	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000154574.c	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000165938	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557	ENSGT00940000160144	ENSGT00390000006930
Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c #17	ENSGT00950000182969.B.c.a.a.c	ENSGT00940000155258 #22	ENSGT00940000154403 #24	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161077	ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000165938	ENSGT00940000158212.A	ENSGT00940000157539
Amniota	DUPLICATION
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c #17	ENSGT00950000182969.B.c.a.a.c	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000160849	ENSGT00940000161783	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000165938
Mammalia	ANCESTRAL SPECIES	256																ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24
Theria	ANCESTRAL SPECIES	9	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602 #20	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000163841	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000159486	ENSGT00940000163931	ENSGT00940000155433	ENSGT00940000162736	ENSGT00940000160295
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000154403.a.b #24	ENSGT00940000160681.C	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000163841	ENSGT00940000153980 #32	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000163931
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000162894 #21	ENSGT00940000154403.a.b #24	ENSGT00940000160681.C	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00940000164263
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000162894 #21	ENSGT00940000154403.a.b #24	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00940000164263
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00900000143461	ENSGT00390000015789.d.b.b ##17	ENSGT00390000015789.c.b ##17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000154403.a.b #24	ENSGT00940000160681.C	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000163841	ENSGT00940000163426	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00940000164263
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00900000143461	ENSGT00390000015789.d.b.b ##17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000154403.a.b #24	ENSGT00940000160681.C	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000163841	ENSGT00940000163426	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000159486.`b.a.a.b
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000162894 #21	ENSGT00940000154403.a.b #24	ENSGT00940000160681.C	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000163841	ENSGT00940000163426	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000159486.`b.a.a.b	ENSGT00940000163931
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000154403.a.b #24	ENSGT00940000160681.C	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000163841	ENSGT00940000163426	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000159486.`b.a.a.b	ENSGT00940000163931
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.h #28	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000163416.p.b.b #37	ENSGT00940000163416.o #36	ENSGT00940000164263	ENSGT00940000159486.`b.a.a.b.b
Percora_a	ANCESTRAL SPECIES	2	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.h #28	ENSGT00940000162088.g ##28	ENSGT00940000153980.q #31	ENSGT00390000001157.B	ENSGT00390000001157.C.jc	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.h #28	ENSGT00940000162088.g ##28	ENSGT00940000153980.q.b #29	ENSGT00940000163426	ENSGT00940000153980.q.a #31	ENSGT00390000001157.B	ENSGT00390000001157.C.jc	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077
Caprinae	ANCESTRAL SPECIES	1	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.h #28	ENSGT00940000162088.g ##28	ENSGT00940000153980.q.b #29	ENSGT00940000153980.r.b #30	ENSGT00940000163841.j	ENSGT00940000153980.r.a #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000163416.p.b.b.b.a.a.a #35	ENSGT00940000163416.o.a.b.a #36
Rambouillet Sheep	MODERN SPECIES	2	CNP (ENSOARG00020003531) #7	ENSOARG00020003645 #8	ACLY (ENSOARG00020004412) #9	KLHL11 (ENSOARG00020004760) #10	KLHL10 (ENSOARG00020004791) #11	NT5C3B (ENSOARG00020004822) #12	FKBP10 (ENSOARG00020004898) #13	P3H4 (ENSOARG00020004940) #14	ENSOARG00020004981 #15	GAST (ENSOARG00020005021) #16	EIF1 (ENSOARG00020005044) #17	ENSOARG00020005122 #18	KRT17 (ENSOARG00020005240) #19	KRT16 (ENSOARG00020005408) #20	KRT9 (ENSOARG00020005450) #21	KRT19 (ENSOARG00020005482) #22	KRT15 (ENSOARG00020005512) #23	ENSOARG00020005568 #24	KRT36 (ENSOARG00020005599) #25	KRT35 (ENSOARG00020005640) #26	KRT32 (ENSOARG00020005669) #27	K38 (ENSOARG00020005694) #28	ENSOARG00020005752 #29	ENSOARG00020005824 #30	ENSOARG00020005866 #31	K33 (ENSOARG00020005906) #32	KRTAP17-1 (ENSOARG00020005941) #33	KRTAP16-1 (ENSOARG00020005944) #34	ENSOARG00020005979 #35	ENSOARG00020005998 #36	ENSOARG00020006016 #37
Goat	MODERN SPECIES	10	CNP (ENSCHIG00000007203) #7	ODAD4 (ENSCHIG00000015441) #8	ACLY (ENSCHIG00000023185) #9	KLHL11 (ENSCHIG00000016423) #10	KLHL10 (ENSCHIG00000017147) #11	NT5C3B (ENSCHIG00000010072) #12	FKBP10 (ENSCHIG00000021843) #13	P3H4 (ENSCHIG00000026227) #14	JUP (ENSCHIG00000026333) #15	ENSCHIG00000012489 #16	EIF1 (ENSCHIG00000019997) #17	ENSCHIG00000012495 #18	KRT17 (ENSCHIG00000010632)	KRT16 (ENSCHIG00000011368) #20	KRT14 (ENSCHIG00000014749) #19	KRT19 (ENSCHIG00000024513) #22	KRT15 (ENSCHIG00000018811) #23	ENSCHIG00000019803 #24	KRT36 (ENSCHIG00000023701) #25	KRT35 (ENSCHIG00000015373) #26	KRT32 (ENSCHIG00000010085) #27	ENSCHIG00000012357 #28	ENSCHIG00000027083 ##28	ENSCHIG00000021923 #29	ENSCHIG00000017849 #30	ENSCHIG00000025510	ENSCHIG00000011715 #32	ENSCHIG00000010916	ENSCHIG00000010322 ##37	ENSCHIG00000002703 ##37	ENSCHIG00000001928 ##37
Bovinae	ANCESTRAL SPECIES		ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.h #28	ENSGT00940000162088.g ##28	ENSGT00940000163841.i	ENSGT00940000153980.q.b #29	ENSGT00940000163426	ENSGT00940000153980.q.a #31	ENSGT00940000163841.j	ENSGT00940000153980.r.a #32	ENSGT00950000183407 #33
Bos	ANCESTRAL SPECIES	1	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.h #28	ENSGT00940000162088.g ##28	ENSGT00940000153980.q.b #29	ENSGT00940000163426	ENSGT00940000153980.q.a #31	ENSGT00940000163841.j	ENSGT00940000153980.r.a #32	ENSGT00940000163658.e.a #34	ENSGT00950000183407 #33	ENSGT00940000163658.f #34
Bos_b	ANCESTRAL SPECIES	21	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.h #28	ENSGT00940000162088.g ##28	ENSGT00940000153980.q.b #29	ENSGT00940000163426	ENSGT00940000153980.q.a #31	ENSGT00940000153980.r.a #32	ENSGT00940000163658.e.a #34	ENSGT00950000183407 #33	ENSGT00940000163658.f #34	ENSGT00940000163416.p.b.b.b.c.b #37
Cow	MODERN SPECIES	10	ACLY (ENSBTAG00000016740) #9	KLHL11 (ENSBTAG00000050549) #10	KLHL10 (ENSBTAG00000011459) #11	NT5C3B (ENSBTAG00000011456) #12	FKBP10 (ENSBTAG00000011454) #13	P3H4 (ENSBTAG00000025752) #14	JUP (ENSBTAG00000017685) #15	HAP1 (ENSBTAG00000052414)	GAST (ENSBTAG00000017663) #16	EIF1 (ENSBTAG00000002282) #17	KRT42 (ENSBTAG00000047262) #18	KRT17 (ENSBTAG00000006806)	KRT16 (ENSBTAG00000033766) #20	KRT14 (ENSBTAG00000007583) #19	KRT9 (ENSBTAG00000047165) #21	KRT19 (ENSBTAG00000004905) #22	KRT15 (ENSBTAG00000004903) #23	ENSBTAG00000050581 #24	KRT36 (ENSBTAG00000046124) #25	KRT35 (ENSBTAG00000006807) #26	KRT32 (ENSBTAG00000016384) #27	ENSBTAG00000053139 #28	KRT37 (ENSBTAG00000000573) ##28	KRT31 (ENSBTAG00000013685) #29	KRT34 (ENSBTAG00000037560)	KRT33B (ENSBTAG00000030519) #31	KRT33A (ENSBTAG00000037553) #32	ENSBTAG00000050447 #34	ENSBTAG00000052164 #34	ENSBTAG00000050542 #37	ENSBTAG00000050115 ##37
Bos_a	ANCESTRAL SPECIES		ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.h #28	ENSGT00940000162088.g ##28	ENSGT00940000163841.i	ENSGT00940000163426	ENSGT00940000163841.j	ENSGT00940000153980.r.a #32	ENSGT00940000163658.e.a #34	ENSGT00950000183407 #33	ENSGT00940000163658.f #34	ENSGT00940000163416.p.b.b.b.c.b #37
Wild yak	MODERN SPECIES	1530																KRT19 (ENSBMUG00000019711) #22	KRT15 (ENSBMUG00000019683) #23	KRT13 (ENSBMUG00000019636)	KRT36 (ENSBMUG00000019588) #25	KRT35 (ENSBMUG00000019571) #26	KRT32 (ENSBMUG00000019549) #27	ENSBMUG00000019526 #28	ENSBMUG00000019514 ##28	ENSBMUG00000019502	KRT34 (ENSBMUG00000019481)	ENSBMUG00000019461	KRT33A (ENSBMUG00000019438) #32	ENSBMUG00000019430 #34	ENSBMUG00000019418	ENSBMUG00000019394	ENSBMUG00000019383 ##37
American bison	MODERN SPECIES	3101	ODAD4 (ENSBBBG00000010428) #8	ACLY (ENSBBBG00000010403) #9	KLHL11 (ENSBBBG00000010289) #10	KLHL10 (ENSBBBG00000010283) #11	NT5C3B (ENSBBBG00000010279) #12	FKBP10 (ENSBBBG00000010271) #13	P3H4 (ENSBBBG00000010264) #14	JUP (ENSBBBG00000000043) #15	ENSBBBG00000000074	GAST (ENSBBBG00000000082) #16	EIF1 (ENSBBBG00000000085) #17	ENSBBBG00000000098 #18	KRT17 (ENSBBBG00000000113)	KRT16 (ENSBBBG00000000131) #20	KRT14 (ENSBBBG00000010236) #19	KRT19 (ENSBBBG00000001735) #22	ENSBBBG00000010227	ENSBBBG00000010225 #23	KRT13 (ENSBBBG00000010222)	KRT36 (ENSBBBG00000010205) #25	ENSBBBG00000010199 #26	KRT32 (ENSBBBG00000010194) #27	ENSBBBG00000010190 #28	ENSBBBG00000001724 ##28	ENSBBBG00000001722	ENSBBBG00000007161 #26	ENSBBBG00000010178	KRT33A (ENSBBBG00000001719) #32	ENSBBBG00000010174 #34	ENSBBBG00000010169 #34	ENSBBBG00000010165 ##37
Cetacea	ANCESTRAL SPECIES	5	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000160681.C	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000153980.t #32	ENSGT00940000163841	ENSGT00940000153980.s #32	ENSGT00940000159486.ab	ENSGT00940000162736	ENSGT00940000160295	ENSGT00390000001157.A.a	ENSGT00390000001157.B	ENSGT00390000001157.C
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000160681.C	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163841	ENSGT00940000153980.s #32	ENSGT00940000160295	ENSGT00390000001157.A.a	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162088 #28	ENSGT00940000153980.t #32	ENSGT00940000159382
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000153980.t #32	ENSGT00940000163841	ENSGT00940000153980.s #32	ENSGT00940000159382	ENSGT00940000161950	ENSGT00940000161783	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000160681.C	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000153980.t #32	ENSGT00940000163841	ENSGT00940000153980.s #32	ENSGT00940000159382	ENSGT00940000161950	ENSGT00940000161783	ENSGT00940000159655	ENSGT00390000003628.b
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000154602.b #20	ENSGT00940000160681.C	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000163841	ENSGT00940000153980.s #32	ENSGT00940000159382	ENSGT00940000161950	ENSGT00940000161783	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b
Narwhal	MODERN SPECIES	316	ODAD4 (ENSMMNG00015017774) #8	ACLY (ENSMMNG00015017610) #9	KLHL11 (ENSMMNG00015017549) #10	KLHL10 (ENSMMNG00015017518) #11	NT5C3B (ENSMMNG00015017429) #12	FKBP10 (ENSMMNG00015017378) #13	P3H4 (ENSMMNG00015017332) #14	JUP (ENSMMNG00015017262) #15	HAP1 (ENSMMNG00015017229)	GAST (ENSMMNG00015017208) #16	EIF1 (ENSMMNG00015017110) #17	ENSMMNG00015017066 #18	ENSMMNG00015017022	KRT16 (ENSMMNG00015016975) #20	ENSMMNG00015016841	KRT19 (ENSMMNG00015016751) #22	KRT15 (ENSMMNG00015016652) #23	KRT13 (ENSMMNG00015016552)	KRT36 (ENSMMNG00015016489) #25	KRT35 (ENSMMNG00015016167) #26	KRT32 (ENSMMNG00015016021) #27	ENSMMNG00015015975 #28	ENSMMNG00015020884	ENSMMNG00015020870 #32	KRT12 (ENSMMNG00015020854)	ENSMMNG00015020836	KRT24 (ENSMMNG00015020814)	KRT222 (ENSMMNG00015020791)	ENSMMNG00015020648	CCR7 (ENSMMNG00015020594)	TNS4 (ENSMMNG00015020571)
Vaquita	MODERN SPECIES	12	ODAD4 (ENSPSNG00000015145) #8	ACLY (ENSPSNG00000014644) #9	KLHL11 (ENSPSNG00000014565) #10	KLHL10 (ENSPSNG00000014471) #11	NT5C3B (ENSPSNG00000014308) #12	FKBP10 (ENSPSNG00000014242) #13	P3H4 (ENSPSNG00000014106) #14	JUP (ENSPSNG00000014058) #15	HAP1 (ENSPSNG00000013642)	GAST (ENSPSNG00000013554) #16	ENSPSNG00000013484 ##17	ENSPSNG00000013387 #18	KRT17 (ENSPSNG00000013207)	ENSPSNG00000013136	KRT14 (ENSPSNG00000013111) #19	KRT19 (ENSPSNG00000013067) #22	KRT15 (ENSPSNG00000012869) #23	KRT13 (ENSPSNG00000012628)	KRT36 (ENSPSNG00000012532) #25	KRT35 (ENSPSNG00000012426) #26	ENSPSNG00000012074 #28	ENSPSNG00000011974	ENSPSNG00000011948	KRT12 (ENSPSNG00000011850)	KRT222 (ENSPSNG00000011342)	ENSPSNG00000011023	CCR7 (ENSPSNG00000010907)	TNS4 (ENSPSNG00000010768)	IGFBP4 (ENSPSNG00000010715)	TOP2A (ENSPSNG00000010629)	RARA (ENSPSNG00000010408)
Dolphin	MODERN SPECIES	5966															KRT14 (ENSTTRG00000014637) #19	KRT19 (ENSTTRG00000014640) #22	KRT15 (ENSTTRG00000014641) #23	ENSTTRG00000014651 #24	KRT36 (ENSTTRG00000014653) #25	KRT35 (ENSTTRG00000014655) #26	KRT32 (ENSTTRG00000014656) #27
Sperm whale	MODERN SPECIES	5	C17orf113 (ENSPCTG00005009444)	ZNF385C (ENSPCTG00005009258)	NKIRAS2 (ENSPCTG00005009177)	DNAJC7 (ENSPCTG00005009095)	CNP (ENSPCTG00005009018) #7	KLHL10 (ENSPCTG00005008921) #11	KLHL11 (ENSPCTG00005008895) #10	ENSPCTG00005008818 #9	JUP (ENSPCTG00005013691) #15	GAST (ENSPCTG00005013628) #16	EIF1 (ENSPCTG00005013605) #17	ENSPCTG00005013518 #18	ENSPCTG00005013413 #18	ENSPCTG00005013296 #20	KRT14 (ENSPCTG00005013034) #19	KRT19 (ENSPCTG00005012929) #22	KRT15 (ENSPCTG00005012795) #23	KRT13 (ENSPCTG00005012719) #24	KRT36 (ENSPCTG00005012640) #25	KRT32 (ENSPCTG00005012144) #27	ENSPCTG00005011986	ENSPCTG00005011593	ENSPCTG00005011457	ENSPCTG00005011439	ENSPCTG00005011402	ENSPCTG00005011382	KRT40 (ENSPCTG00005011311)	KRT12 (ENSPCTG00005011232)	ENSPCTG00005011172	KRT222 (ENSPCTG00005011101)	SMARCE1 (ENSPCTG00005010790)
Blue whale	MODERN SPECIES	12	ENSBMSG00010019019	CNP (ENSBMSG00010018961) #7	ODAD4 (ENSBMSG00010018938) #8	ACLY (ENSBMSG00010018816) #9	KLHL11 (ENSBMSG00010018763) #10	KLHL10 (ENSBMSG00010018740) #11	NT5C3B (ENSBMSG00010018662) #12	FKBP10 (ENSBMSG00010018627) #13	P3H4 (ENSBMSG00010018588) #14	JUP (ENSBMSG00010018564) #15	HAP1 (ENSBMSG00010018495)	GAST (ENSBMSG00010018466) #16	EIF1 (ENSBMSG00010018446) #17	ENSBMSG00010018413 #18	KRT16 (ENSBMSG00010018366) #20	KRT19 (ENSBMSG00010018329) #22	KRT17 (ENSBMSG00010018066)	KRT36 (ENSBMSG00010017972) #25	KRT32 (ENSBMSG00010017927) #27	ENSBMSG00010017872 #32	ENSBMSG00010017828 #32	ENSBMSG00010017779	ENSBMSG00010017768	ENSBMSG00010017743	ENSBMSG00010017722	ENSBMSG00010017711	ENSBMSG00010017700	ENSBMSG00010017678	ENSBMSG00010017663	ENSBMSG00010017650	ENSBMSG00010017624
Camelidae	ANCESTRAL SPECIES	99							ENSGT00940000156331 #13	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.v #32	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000153980.u #32	ENSGT00940000163416 #37	ENSGT00940000159486.ab.b	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486.ab.a.a.b	ENSGT00940000155433
Arabian camel	MODERN SPECIES	7	SPAG9 (ENSCDRG00005003908)	NME1 (ENSCDRG00005003807)	ENSCDRG00005003757	ENSCDRG00005003645	MBTD1 (ENSCDRG00005003547)	ENSCDRG00005003445	FKBP10 (ENSCDRG00005003410) #13	JUP (ENSCDRG00005003373) #15	HAP1 (ENSCDRG00005011720)	GAST (ENSCDRG00005011677) #16	EIF1 (ENSCDRG00005011615) #17	ENSCDRG00005011549 #18	KRT17 (ENSCDRG00005011420)	KRT14 (ENSCDRG00005011145) #19	ENSCDRG00005011084 #21	KRT19 (ENSCDRG00005011031) #22	KRT15 (ENSCDRG00005010831) #23	ENSCDRG00005010651 #24	KRT36 (ENSCDRG00005010467) #25	KRT35 (ENSCDRG00005010292) #26	ENSCDRG00005010183	KRT34 (ENSCDRG00005010086)	ENSCDRG00005009998	KRT33A (ENSCDRG00005009908) #32	ENSCDRG00005009739 #37	ENSCDRG00005009407 #37	KRTAP4-7 (ENSCDRG00005009123)	ENSCDRG00005009055	KRTAP4-3 (ENSCDRG00005009038)	ENSCDRG00005009011	ENSCDRG00005008967
Suina	ANCESTRAL SPECIES		ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00900000143461.a	ENSGT00390000015789.d.b.b ##17	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00410000025802.g.a.e	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000153980.p #32	ENSGT00940000163841	ENSGT00940000153980.o #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000159486.`b.a.a.a	ENSGT00940000160443.b	ENSGT00940000160443.a	ENSGT00940000160295
Pig	MODERN SPECIES	3	KLHL11 (ENSSSCG00000032404) #10	KLHL10 (ENSSSCG00000033629) #11	NT5C3B (ENSSSCG00000034779) #12	FKBP10 (ENSSSCG00000017422) #13	P3H4 (ENSSSCG00000017429) #14	JUP (ENSSSCG00000017428) #15	HAP1 (ENSSSCG00000017427)	GAST (ENSSSCG00000021910) #16	ENSSSCG00000034799	EIF1 (ENSSSCG00000017430) #17	ENSSSCG00000017433 #18	KRT17 (ENSSSCG00000056910)	ENSSSCG00000055849 #19	ENSSSCG00000017448 #19	ENSSSCG00000017446	KRT19 (ENSSSCG00000058816) #22	KRT15 (ENSSSCG00000017444) #23	ENSSSCG00000017445 #24	KRT36 (ENSSSCG00000017437) #25	KRT35 (ENSSSCG00000017438) #26	KRT32 (ENSSSCG00000017439) #27	KRT31 (ENSSSCG00000021668) #32	ENSSSCG00000017441 #32	ENSSSCG00000021755	ENSSSCG00000030350 #32	KRTAP17-1 (ENSSSCG00000041928) #33	ENSSSCG00000052790 #34	KRTAP29-1 (ENSSSCG00000047939)	ENSSSCG00000046804 #37	ENSSSCG00000039008 #37	ENSSSCG00000037569 #37
Chacoan peccary	MODERN SPECIES	941	NT5C3B (ENSCWAG00000012755) #12	FKBP10 (ENSCWAG00000012699) #13	P3H4 (ENSCWAG00000012602) #14	JUP (ENSCWAG00000012556) #15	HAP1 (ENSCWAG00000012350)	GAST (ENSCWAG00000012317) #16	ENSCWAG00000012296	ENSCWAG00000012269 ##17	ENSCWAG00000012256 #18	ENSCWAG00000012198 #18	KRT17 (ENSCWAG00000012112)	KRT16 (ENSCWAG00000012005) #20	ENSCWAG00000011954	KRT14 (ENSCWAG00000011785) #19	ENSCWAG00000011736	KRT19 (ENSCWAG00000018237) #22	KRT15 (ENSCWAG00000018128) #23	ENSCWAG00000018009 #24	KRT36 (ENSCWAG00000017896) #25	KRT35 (ENSCWAG00000017776) #26	KRT32 (ENSCWAG00000017718) #27	ENSCWAG00000017665 #28	ENSCWAG00000017610 #28	ENSCWAG00000017530 #32	ENSCWAG00000017481 #32	ENSCWAG00000017369 #34	ENSCWAG00000017284	ENSCWAG00000017197	ENSCWAG00000017174	ENSCWAG00000017141	ENSCWAG00000017125
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000163841	ENSGT00940000163426	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163975	ENSGT00940000159486
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.x #32	ENSGT00940000163931	ENSGT00940000159486.hb	ENSGT00940000163975	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.x #32	ENSGT00940000159486.gb.b	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.k.a #28	ENSGT00940000162088.k.b #28	ENSGT00940000163444	ENSGT00940000162088.l #28	ENSGT00940000153980.x #32	ENSGT00940000153980.w.b #32	ENSGT00940000153980.w.a.a #32	ENSGT00940000153980.w.a.b #32	ENSGT00940000163658 #34	ENSGT00940000163416 #37
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.k.a #28	ENSGT00940000162088.k.b #28	ENSGT00940000163444	ENSGT00940000162088.l #28	ENSGT00940000153980.x #32	ENSGT00940000153980.w.b #32	ENSGT00940000153980.w.a.a #32	ENSGT00940000153980.w.a.b #32	ENSGT00940000163658 #34	ENSGT01090000260762
Dingo	MODERN SPECIES	150	ACLY (ENSCAFG00020014153) #9	KLHL11 (ENSCAFG00020018252) #10	KLHL10 (ENSCAFG00020018256) #11	NT5C3B (ENSCAFG00020018261) #12	FKBP10 (ENSCAFG00020018262) #13	P3H4 (ENSCAFG00020018265) #14	JUP (ENSCAFG00020018267) #15	HAP1 (ENSCAFG00020018269)	GAST (ENSCAFG00020018277) #16	ENSCAFG00020018280 #17	ENSCAFG00020018283 #18	KRT17 (ENSCAFG00020018290)	KRT16 (ENSCAFG00020018298) #20	KRT14 (ENSCAFG00020018313) #19	KRT9 (ENSCAFG00020018328) #21	KRT19 (ENSCAFG00020018332) #22	KRT15 (ENSCAFG00020018335) #23	ENSCAFG00020018347 #24	KRT36 (ENSCAFG00020018355) #25	KRT35 (ENSCAFG00020018365) #26	KRT32 (ENSCAFG00020018375) #27	ENSCAFG00020018383 #28	ENSCAFG00020018395 #28	ENSCAFG00020018398 #28	ENSCAFG00020018399 #32	ENSCAFG00020018423 #32	ENSCAFG00020018458 #32	ENSCAFG00020018477 #32	KRTAP16-1 (ENSCAFG00020018496) #34	ENSCAFG00020018521	ENSCAFG00020018525 #37
Red fox	MODERN SPECIES	241	ACLY (ENSVVUG00000019109) #9	KLHL11 (ENSVVUG00000019107) #10	KLHL10 (ENSVVUG00000019104) #11	NT5C3B (ENSVVUG00000019081) #12	FKBP10 (ENSVVUG00000019076) #13	P3H4 (ENSVVUG00000019047) #14	JUP (ENSVVUG00000019027) #15	HAP1 (ENSVVUG00000019013)	GAST (ENSVVUG00000018998) #16	ENSVVUG00000018993 #17	ENSVVUG00000018984 #18	KRT17 (ENSVVUG00000018970)	KRT16 (ENSVVUG00000018933) #20	KRT14 (ENSVVUG00000018897) #19	KRT9 (ENSVVUG00000018879) #21	KRT19 (ENSVVUG00000018871) #22	KRT15 (ENSVVUG00000018852) #23	ENSVVUG00000018818 #24	KRT36 (ENSVVUG00000018803) #25	KRT35 (ENSVVUG00000018791) #26	KRT32 (ENSVVUG00000018779) #27	ENSVVUG00000018769 #28	ENSVVUG00000018762 #28	ENSVVUG00000018756 #28	ENSVVUG00000018723 #32	ENSVVUG00000018687 #32	ENSVVUG00000018664 #32	ENSVVUG00000018639 #32	ENSVVUG00000018625 #34	ENSVVUG00000018618 #37
Caniformia_b	ANCESTRAL SPECIES	20	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.x #32	ENSGT00940000163841.l	ENSGT00940000153980.w.b #32	ENSGT00940000153980.w.a.a #32	ENSGT00940000163841.k	ENSGT00940000153980.w.a.b #32	ENSGT00940000163658 #34	ENSGT00940000164459
Ursidae	ANCESTRAL SPECIES	19	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183.d	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000153980.x #32	ENSGT00940000153980.w.b #32	ENSGT00940000153980.w.a.a #32
Ursus	ANCESTRAL SPECIES	79	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183.d	ENSGT00390000014792 #16	ENSGT00390000015789.c.b ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.m.a #28	ENSGT00940000162088.n.a #28	ENSGT00940000153980.x #32	ENSGT00940000153980.w.b #32	ENSGT00940000153980.w.a.a #32
American black bear	MODERN SPECIES	3283										ENSUAMG00000008201 ##17	ENSUAMG00000008200 #18	KRT17 (ENSUAMG00000008197)	KRT16 (ENSUAMG00000008191) #20	KRT14 (ENSUAMG00000008156) #19	ENSUAMG00000008152 #21	KRT19 (ENSUAMG00000008150) #22	KRT15 (ENSUAMG00000008149) #23	ENSUAMG00000008146 #24	ENSUAMG00000008145 #25	ENSUAMG00000008144 #25	KRT35 (ENSUAMG00000008143) #26	KRT32 (ENSUAMG00000008136) #27
Mustelinae	ANCESTRAL SPECIES	1	ENSGT00940000174154	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.x #32	ENSGT00940000163841.l	ENSGT00940000153980.w.b #32	ENSGT00940000153980.w.a.a #32	ENSGT00940000163841.k	ENSGT00940000153980.w.a.b #32
Ferret	MODERN SPECIES	336	CNP (ENSMPUG00000010608) #7	ODAD4 (ENSMPUG00000010622) #8	ACLY (ENSMPUG00000010652) #9	KLHL11 (ENSMPUG00000010711) #10	KLHL10 (ENSMPUG00000010715) #11	NT5C3B (ENSMPUG00000010759) #12	FKBP10 (ENSMPUG00000010810) #13	P3H4 (ENSMPUG00000010815) #14	ENSMPUG00000010869	JUP (ENSMPUG00000010872) #15	ENSMPUG00000010877	GAST (ENSMPUG00000010880) #16	EIF1 (ENSMPUG00000010883) #17	KRT16 (ENSMPUG00000010912) #20	KRT14 (ENSMPUG00000010916) #19	KRT19 (ENSMPUG00000010928) #22	ENSMPUG00000010966 #24	KRT36 (ENSMPUG00000010994) #25	KRT35 (ENSMPUG00000011003) #26	KRT32 (ENSMPUG00000011051) #27	ENSMPUG00000011074 #28	ENSMPUG00000011088 #28	ENSMPUG00000011104 #28	ENSMPUG00000011115 #32	ENSMPUG00000011180 #32	ENSMPUG00000011193 #32	ENSMPUG00000011262 #32
American mink	MODERN SPECIES	354	ENSNVIG00000011910	ACLY (ENSNVIG00000011741) #9	KLHL11 (ENSNVIG00000011712) #10	KLHL10 (ENSNVIG00000011693) #11	NT5C3B (ENSNVIG00000011670) #12	FKBP10 (ENSNVIG00000011651) #13	P3H4 (ENSNVIG00000011616) #14	JUP (ENSNVIG00000011585) #15	GAST (ENSNVIG00000011578) #16	EIF1 (ENSNVIG00000011568) #17	ENSNVIG00000011549 #18	KRT17 (ENSNVIG00000011527)	KRT16 (ENSNVIG00000011506) #20	KRT14 (ENSNVIG00000011484) #19	KRT9 (ENSNVIG00000011463) #21	KRT19 (ENSNVIG00000011452) #22	ENSNVIG00000011420 #23	KRT13 (ENSNVIG00000011365)	KRT36 (ENSNVIG00000011351) #25	KRT35 (ENSNVIG00000011324) #26	KRT32 (ENSNVIG00000011313) #27	ENSNVIG00000011302	ENSNVIG00000011275	ENSNVIG00000011269 #28	ENSNVIG00000011242	ENSNVIG00000011168 #32	ENSNVIG00000011159	ENSNVIG00000011141	ENSNVIG00000011136 #32
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.x #32	ENSGT00940000153980.w.b #32	ENSGT00940000163841.k	ENSGT00940000153980.w.a.b #32	ENSGT00940000163658 #34	ENSGT00940000163416 #37	ENSGT00940000163931	ENSGT00940000159486.hb
Panthera	ANCESTRAL SPECIES	42	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.i.a #28	ENSGT00940000162088.i.b #28	ENSGT00940000163444	ENSGT00940000162088.j #28	ENSGT00940000153980.x #32	ENSGT00940000153980.w.b #32	ENSGT00940000163841.k	ENSGT00940000153980.w.a.b #32	ENSGT00940000163658 #34	ENSGT00940000163416 #37
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.i.a #28	ENSGT00940000162088.i.b #28	ENSGT00940000163444	ENSGT00940000162088.j #28	ENSGT00940000153980.x #32	ENSGT00940000153980.w.b #32	ENSGT00940000153980.w.a.a #32	ENSGT00940000163841.k	ENSGT00940000153980.w.a.b #32
lion	MODERN SPECIES	14	ACLY (ENSPLOG00000006328) #9	KLHL11 (ENSPLOG00000006281) #10	KLHL10 (ENSPLOG00000006239) #11	NT5C3B (ENSPLOG00000006095) #12	FKBP10 (ENSPLOG00000005972) #13	P3H4 (ENSPLOG00000005908) #14	JUP (ENSPLOG00000005881) #15	HAP1 (ENSPLOG00000005794)	GAST (ENSPLOG00000005753) #16	EIF1 (ENSPLOG00000005737) #17	ENSPLOG00000005690 #18	KRT17 (ENSPLOG00000005579)	KRT16 (ENSPLOG00000005540) #20	KRT14 (ENSPLOG00000005486) #19	KRT9 (ENSPLOG00000005436) #21	KRT19 (ENSPLOG00000017023) #22	ENSPLOG00000016896 #24	KRT36 (ENSPLOG00000016234) #25	KRT35 (ENSPLOG00000016035) #26	KRT32 (ENSPLOG00000015965) #27	ENSPLOG00000015831	ENSPLOG00000015759	ENSPLOG00000015677 #28	ENSPLOG00000015602	ENSPLOG00000015516	KRT33A (ENSPLOG00000015451) #32	KRTAP16-1 (ENSPLOG00000015356) #34	ENSPLOG00000015324 #37	KRTAP3-1 (ENSPLOG00000015302)	ENSPLOG00000015267	ENSPLOG00000015250
leopard	MODERN SPECIES	177	ACLY (ENSPPRG00000001884) #9	KLHL11 (ENSPPRG00000021994) #10	KLHL10 (ENSPPRG00000020089) #11	NT5C3B (ENSPPRG00000018568) #12	FKBP10 (ENSPPRG00000016170) #13	P3H4 (ENSPPRG00000013330) #14	JUP (ENSPPRG00000013021) #15	HAP1 (ENSPPRG00000010532)	GAST (ENSPPRG00000007220) #16	EIF1 (ENSPPRG00000006944) #17	ENSPPRG00000006409 #18	KRT17 (ENSPPRG00000005972)	KRT16 (ENSPPRG00000005644) #20	KRT14 (ENSPPRG00000005571) #19	ENSPPRG00000005162 #21	KRT19 (ENSPPRG00000004847) #22	KRT15 (ENSPPRG00000004815) #23	KRT13 (ENSPPRG00000004124)	KRT36 (ENSPPRG00000003313) #25	KRT35 (ENSPPRG00000002629) #26	KRT32 (ENSPPRG00000002037) #27	ENSPPRG00000001868 #28	ENSPPRG00000001749 #28	ENSPPRG00000001489 #28	ENSPPRG00000000624 #32	ENSPPRG00000000582 #32	ENSPPRG00000022703 #32	ENSPPRG00000023018 #32	ENSPPRG00000014717	ENSPPRG00000023667
Tiger	MODERN SPECIES	268	DNAJC7 (ENSPTIG00000007500)	CNP (ENSPTIG00000007387) #7	ACLY (ENSPTIG00000006131) #9	KLHL11 (ENSPTIG00000006057) #10	KLHL10 (ENSPTIG00000005743) #11	NT5C3B (ENSPTIG00000005655) #12	FKBP10 (ENSPTIG00000005540) #13	P3H4 (ENSPTIG00000005444) #14	JUP (ENSPTIG00000005326) #15	GAST (ENSPTIG00000005313) #16	ENSPTIG00000005249 ##17	ENSPTIG00000005071 #18	KRT17 (ENSPTIG00000004921)	KRT16 (ENSPTIG00000004811) #20	KRT9 (ENSPTIG00000003392) #21	KRT19 (ENSPTIG00000003328) #22	KRT15 (ENSPTIG00000002144) #23	ENSPTIG00000000005 #24	KRT36 (ENSPTIG00000019860) #25	KRT35 (ENSPTIG00000019786) #26	KRT32 (ENSPTIG00000019689) #27	ENSPTIG00000019673 #28	ENSPTIG00000019630 #28	ENSPTIG00000019510 #28	ENSPTIG00000019452 #32	ENSPTIG00000019429 #32	ENSPTIG00000019274	ENSPTIG00000019196 #32	ENSPTIG00000019120
Cat	DUPLICATION
Cat	MODERN SPECIES	245	ENSFCAG00000049077	DNAJC7 (ENSFCAG00000002142)	CNP (ENSFCAG00000022165) #7	ODAD4 (ENSFCAG00000002141) #8	ACLY (ENSFCAG00000002140) #9	KLHL11 (ENSFCAG00000042359) #10	KLHL10 (ENSFCAG00000002139) #11	NT5C3B (ENSFCAG00000023499) #12	FKBP10 (ENSFCAG00000002137) #13	P3H4 (ENSFCAG00000002135) #14	JUP (ENSFCAG00000002133) #15	GAST (ENSFCAG00000038911) #16	ENSFCAG00000038592 #17	KRT17 (ENSFCAG00000012443) #18	KRT9 (ENSFCAG00000012438) #21	ENSFCAG00000042651 #22	ENSFCAG00000001928 #24	KRT36 (ENSFCAG00000039608) #25	ENSFCAG00000042331 #28	KRT32 (ENSFCAG00000032558) #27	ENSFCAG00000051934 #37	ENSFCAG00000045780	ENSFCAG00000053497	ENSFCAG00000045055	ENSFCAG00000040679	ENSFCAG00000027774	ENSFCAG00000008820	ENSFCAG00000006428	KRTAP3-1 (ENSFCAG00000013310)	ENSFCAG00000035429	ENSFCAG00000033927
Cat	MODERN SPECIES	215																ENSFCAG00000045760 #22	ENSFCAG00000041710 #23
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00390000015789.c.b ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000153980 #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000159486	ENSGT00940000154448.b.b.b.b	ENSGT00940000164263
Equus	ANCESTRAL SPECIES		ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00900000143461	ENSGT00390000015789.c.b ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.s #28	ENSGT00940000153980.z.b #32	ENSGT00950000183407 #33	ENSGT00940000162088.t #28	ENSGT00940000153980.y #32	ENSGT00940000163658 #34	ENSGT00940000156135	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000163931
Horse	MODERN SPECIES	28	ENSECAG00000052866	IZUMO1R (ENSECAG00000007254)	PANX1 (ENSECAG00000007780)	HEPHL1 (ENSECAG00000008947)	ENSECAG00000011283	VSTM5 (ENSECAG00000011305)	MED17 (ENSECAG00000011329)	C7H11orf54 (ENSECAG00000015110)	TAF1D (ENSECAG00000017850)	CEP295 (ENSECAG00000018114)	DEUP1 (ENSECAG00000020231)	SLC36A4 (ENSECAG00000021237)	MTNR1B (ENSECAG00000022198)	ENSECAG00000022260	FAT3 (ENSECAG00000001988)	ENSECAG00000005999 #22	ENSECAG00000049990	CHORDC1 (ENSECAG00000008999)	ENSECAG00000019401	ENSECAG00000021692	ENSECAG00000040279	ENSECAG00000044730	ENSECAG00000028200	ENSECAG00000045892	ENSECAG00000052300	FOLH1 (ENSECAG00000022737)	NOX4 (ENSECAG00000010054)	TYR (ENSECAG00000016425)	GRM5 (ENSECAG00000018967)	ENSECAG00000020876	CTSC (ENSECAG00000020881)
Donkey	MODERN SPECIES	4	KLHL11 (ENSEASG00005006716) #10	KLHL10 (ENSEASG00005006713) #11	NT5C3B (ENSEASG00005006708) #12	FKBP10 (ENSEASG00005006696) #13	P3H4 (ENSEASG00005006689) #14	JUP (ENSEASG00005006685) #15	HAP1 (ENSEASG00005006673)	GAST (ENSEASG00005033317) #16	ENSEASG00005024501	EIF1 (ENSEASG00005036736) ##17	ENSEASG00005006661 #18	KRT17 (ENSEASG00005006658)	KRT16 (ENSEASG00005006656) #20	KRT14 (ENSEASG00005006654) #19	KRT9 (ENSEASG00005029948) #21	KRT19 (ENSEASG00005024924) #22	KRT15 (ENSEASG00005006648) #23	KRT13 (ENSEASG00005006646)	KRT36 (ENSEASG00005006643) #25	KRT35 (ENSEASG00005006641) #26	KRT32 (ENSEASG00005006638) #27	ENSEASG00005006633 #28	ENSEASG00005006628 #28	ENSEASG00005006619 #32	ENSEASG00005006623 #32	ENSEASG00005030059 #32	ENSEASG00005006609 #32	KRTAP17-1 (ENSEASG00005030352) #33	ENSEASG00005006606 #34	ENSEASG00005037204	ENSEASG00005026331 #37
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00390000014792 #16	ENSGT00390000015789.c.b ##17	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000153980 #32	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00390000001157.A.b
Megabat	MODERN SPECIES	3315					KLHL10 (ENSPVAG00000010637) #11	NT5C3B (ENSPVAG00000010634) #12	FKBP10 (ENSPVAG00000010633) #13	P3H4 (ENSPVAG00000010632) #14	JUP (ENSPVAG00000010631) #15	HAP1 (ENSPVAG00000010630)	EIF1 (ENSPVAG00000010629) #17	ENSPVAG00000010628	KRT17 (ENSPVAG00000010627)	KRT16 (ENSPVAG00000010626) #20	KRT14 (ENSPVAG00000010625) #19	KRT19 (ENSPVAG00000010624) #22	KRT15 (ENSPVAG00000010623) #23	ENSPVAG00000010622 #24	KRT36 (ENSPVAG00000010620) #25	KRT35 (ENSPVAG00000010619) #26	KRT32 (ENSPVAG00000010617) #27	ENSPVAG00000010615 #28	ENSPVAG00000010613 #28	ENSPVAG00000010612 #32	KRT34 (ENSPVAG00000010610)	ENSPVAG00000010609 #32	ENSPVAG00000010608 #32	ENSPVAG00000010607	KRTAP16-1 (ENSPVAG00000010606) #34	KRTAP29-1 (ENSPVAG00000010605)
Microchiroptera	ANCESTRAL SPECIES		ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163841	ENSGT00940000153980 #32	ENSGT00940000163426	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160295	ENSGT00390000001157.A.b	ENSGT00390000001157.C
Microbat	MODERN SPECIES	1083	SSTR2 (ENSMLUG00000016665)	SLC39A11 (ENSMLUG00000016655)	SOX9 (ENSMLUG00000030312)	KCNJ2 (ENSMLUG00000006713)	KCNJ16 (ENSMLUG00000006707)	MAP2K6 (ENSMLUG00000006692)	ABCA5 (ENSMLUG00000026519)	ABCA6 (ENSMLUG00000005514)	ABCA9 (ENSMLUG00000008342)	ENSMLUG00000008269	GAST (ENSMLUG00000005072) #16	ENSMLUG00000005077 #17	ENSMLUG00000006332 #18	KRT17 (ENSMLUG00000010863)	KRT16 (ENSMLUG00000012873) #20	ENSMLUG00000015206 #22	KRT15 (ENSMLUG00000022989) #23	ENSMLUG00000015194 #24	KRT36 (ENSMLUG00000015183) #25	KRT35 (ENSMLUG00000009663) #26	KRT32 (ENSMLUG00000015177) #27	ENSMLUG00000015170 #28	ENSMLUG00000015158 #28	ENSMLUG00000015147 #32	ENSMLUG00000005039	ENSMLUG00000005380 #32	ENSMLUG00000015140 #32	ENSMLUG00000015139	ENSMLUG00000014892	ENSMLUG00000014134	ENSMLUG00000010189
Eulipotyphla	ANCESTRAL SPECIES	156																ENSGT00940000155258.t #22	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27
Hedgehog	MODERN SPECIES	1164																KRT19 (ENSEEUG00000001052) #22	ENSEEUG00000001040 #24	KRT36 (ENSEEUG00000001037) #25	KRT35 (ENSEEUG00000001028) #26	KRT32 (ENSEEUG00000001013) #27
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.i.a #32	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000153980.j #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00390000015789.c.b ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.i.a #32	ENSGT00940000153980.i.b #32	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000153980.j #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Glires	ANCESTRAL SPECIES	3	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00390000015789.c.b.t ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a #32	ENSGT00940000153980.j.a.a #32	ENSGT00940000163841	ENSGT00940000153980.j.b #32	ENSGT00950000183407 #33
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00390000015789.c.b.t ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a #32	ENSGT00940000153980.j.a.a #32	ENSGT00940000163841	ENSGT00940000153980.j.a.b.b #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a #32	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000163931	ENSGT00940000159486.f	ENSGT00940000154448.b.b.b.b.f
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a #32	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000153980.j.a.a #32	ENSGT00940000153980.j.a.b.b #32	ENSGT00940000154448.b.b.b.b.f
Muroidea	ANCESTRAL SPECIES		ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a #32	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000159486.f.f	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000159486.f.e.a.a.a
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.b.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a #32	ENSGT00860000136155	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00840000130699	ENSGT00940000159486.f.f.a.b	ENSGT00940000163416 #37	ENSGT00940000164263
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.b.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.a #32	ENSGT00940000160295.ib.a	ENSGT00390000001157.A.b	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.b.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a.a.b #32	ENSGT00940000153980.j.a.b.a.a.a.a #32	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00840000130699	ENSGT00940000159486.f.f.a.b	ENSGT00940000163416 #37	ENSGT00940000154448.b.b.b.b.f
Chinese hamster chok1gshd	MODERN SPECIES	33	ENSCGRG00001020299 #9	Klhl11 (ENSCGRG00001000275) #10	Klhl10 (ENSCGRG00001017363) #11	Nt5c3b (ENSCGRG00001023229) #12	Fkbp10 (ENSCGRG00001015001) #13	P3h4 (ENSCGRG00001005342) #14	Jup (ENSCGRG00001005618) #15	Hap1 (ENSCGRG00001016906)	Gast (ENSCGRG00001018132) #16	ENSCGRG00001015513 ##17	Krt42 (ENSCGRG00001005409) #18	Krt17 (ENSCGRG00001020336)	Krt16 (ENSCGRG00001015254) #20	Krt14 (ENSCGRG00001015161) #19	Krt9 (ENSCGRG00001021018) #21	Krt19 (ENSCGRG00001015028) #22	Krt15 (ENSCGRG00001012486) #23	Krt13 (ENSCGRG00001006585) #24	Krt36 (ENSCGRG00001022979) #25	Krt35 (ENSCGRG00001022383) #26	Krt32 (ENSCGRG00001019573) #27	Krt31 (ENSCGRG00001020331) #32	Krt34 (ENSCGRG00001018529)	ENSCGRG00001016336 #32	ENSCGRG00001011899 #32	ENSCGRG00001004951	Krtap16-1 (ENSCGRG00001006864) #34	Krtap29-1 (ENSCGRG00001005119)	ENSCGRG00001023608	ENSCGRG00001020583	ENSCGRG00001011806
Golden Hamster	MODERN SPECIES	882	Odad4 (ENSMAUG00000006166) #8	Acly (ENSMAUG00000000465) #9	Klhl11 (ENSMAUG00000017249) #10	Klhl10 (ENSMAUG00000021131) #11	Nt5c3b (ENSMAUG00000015023) #12	Fkbp10 (ENSMAUG00000014011) #13	P3h4 (ENSMAUG00000017873) #14	Jup (ENSMAUG00000015872) #15	Hap1 (ENSMAUG00000015239)	Gast (ENSMAUG00000016246) #16	ENSMAUG00000008970 #18	Krt17 (ENSMAUG00000015460)	Krt16 (ENSMAUG00000013514) #20	Krt14 (ENSMAUG00000014542) #19	Krt9 (ENSMAUG00000009863) #21	Krt19 (ENSMAUG00000001379) #22	Krt15 (ENSMAUG00000012596) #23	Krt13 (ENSMAUG00000016027) #24	Krt36 (ENSMAUG00000014666) #25	Krt35 (ENSMAUG00000013766) #26	Krt32 (ENSMAUG00000011384) #27	Krt34 (ENSMAUG00000012068)	ENSMAUG00000010414 #32
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.b.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a.a.b #32	ENSGT00940000153980.j.a.b.a.a.a.a #32	ENSGT00860000136155	ENSGT00940000153980.j.a.b.a.a.b #32	ENSGT00940000163658 #34	ENSGT00940000159486.f.e.a.b	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433
Prairie vole	MODERN SPECIES	114				Nt5c3b (ENSMOCG00000012904) #12	Fkbp10 (ENSMOCG00000020969) #13	P3h4 (ENSMOCG00000020222) #14	Jup (ENSMOCG00000013988) #15	Hap1 (ENSMOCG00000018599)	Gast (ENSMOCG00000015714) #16	Eif1 (ENSMOCG00000013986) ##17	Krt42 (ENSMOCG00000020707) #18	Krt17 (ENSMOCG00000007079)	Krt16 (ENSMOCG00000002310) #20	Krt14 (ENSMOCG00000012751) #19	Krt9 (ENSMOCG00000007293) #21	Krt19 (ENSMOCG00000015107) #22	Krt15 (ENSMOCG00000014586) #23	Krt13 (ENSMOCG00000010928) #24	ENSMOCG00000006876	Krt36 (ENSMOCG00000018894) #25	Krt35 (ENSMOCG00000011239) #26	Krt32 (ENSMOCG00000000760) #27	Krt31 (ENSMOCG00000007467) #32	Krt34 (ENSMOCG00000006745)	ENSMOCG00000015428 #32	ENSMOCG00000002836 #32	Krtap16-1 (ENSMOCG00000003435) #34	ENSMOCG00000019679	Krtap4-16 (ENSMOCG00000016962)	Krtap4-8 (ENSMOCG00000019908)	ENSMOCG00000001864
Northern American deer mouse	MODERN SPECIES	21	Acly (ENSPEMG00000006656) #9	Klhl11 (ENSPEMG00000026157) #10	Klhl10 (ENSPEMG00000016939) #11	Nt5c3b (ENSPEMG00000016608) #12	Fkbp10 (ENSPEMG00000015119) #13	P3h4 (ENSPEMG00000003895) #14	Jup (ENSPEMG00000011596) #15	Hap1 (ENSPEMG00000012716)	Gast (ENSPEMG00000011428) #16	ENSPEMG00000015694 ##17	Krt42 (ENSPEMG00000012473) #18	Krt17 (ENSPEMG00000018467)	Krt16 (ENSPEMG00000010768) #20	Krt14 (ENSPEMG00000018789) #19	Krt9 (ENSPEMG00000008176) #21	Krt19 (ENSPEMG00000006832) #22	Krt15 (ENSPEMG00000017616) #23	Krt13 (ENSPEMG00000018368) #24	Krt36 (ENSPEMG00000013117) #25	Krt35 (ENSPEMG00000002875) #26	Krt32 (ENSPEMG00000018356) #27	Krt31 (ENSPEMG00000006083) #32	Krt34 (ENSPEMG00000018803)	ENSPEMG00000029426 #32	ENSPEMG00000018880 #32	Krtap17-1 (ENSPEMG00000026770)	ENSPEMG00000029773 #34	ENSPEMG00000028611	Gm11567 (ENSPEMG00000028924)	ENSPEMG00000030199	ENSPEMG00000030403
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.b.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a.d #32	ENSGT00940000153980.j.a.b.a.a.c #32	ENSGT00860000136155	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000159486.f.f.b
Mus	ANCESTRAL SPECIES	2	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.b.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a.d #32	ENSGT00940000153980.j.a.b.a.a.c #32	ENSGT00860000136155	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00840000130699.a	ENSGT00940000159486.f.f.a.b
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.b.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a.d #32	ENSGT00940000153980.j.a.b.a.a.c #32	ENSGT00860000136155	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00840000130699.b	ENSGT00840000130699.a
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.b.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a.d #32	ENSGT00940000153980.j.a.b.a.a.c #32	ENSGT00860000136155	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00840000130699.b	ENSGT00840000130699.a.b
Mus_C	ANCESTRAL SPECIES	21	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b.t.c.b.a ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b.c #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.a.a.d #32	ENSGT00940000153980.j.a.b.a.a.c #32	ENSGT00860000136155	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000163416 #37	ENSGT00840000130699.b	ENSGT00840000130699.a.b
spretus	MODERN SPECIES	2	Acly (MGP_SPRETEiJ_G0018018) #9	Klhl11 (MGP_SPRETEiJ_G0018017) #10	Klhl10 (MGP_SPRETEiJ_G0018016) #11	Nt5c3b (MGP_SPRETEiJ_G0018015) #12	Fkbp10 (MGP_SPRETEiJ_G0018014) #13	P3h4 (MGP_SPRETEiJ_G0018013) #14	Jup (MGP_SPRETEiJ_G0018012) #15	Hap1 (MGP_SPRETEiJ_G0018011)	Gast (MGP_SPRETEiJ_G0018010) #16	MGP_SPRETEiJ_G0018009 ##17	Krt42 (MGP_SPRETEiJ_G0018008) #18	Krt17 (MGP_SPRETEiJ_G0018007)	MGP_SPRETEiJ_G0018006 #20	Krt14 (MGP_SPRETEiJ_G0018005) #19	Krt9 (MGP_SPRETEiJ_G0018004) #21	Krt19 (MGP_SPRETEiJ_G0018003) #22	Krt15 (MGP_SPRETEiJ_G0018002) #23	Krt13 (MGP_SPRETEiJ_G0018001) #24	Krt36 (MGP_SPRETEiJ_G0018000) #25	Krt35 (MGP_SPRETEiJ_G0017999) #26	Krt32 (MGP_SPRETEiJ_G0017998) #27	Krt31 (MGP_SPRETEiJ_G0017997) #32	Krt34 (MGP_SPRETEiJ_G0017996)	MGP_SPRETEiJ_G0017995 #32	Krt33a (MGP_SPRETEiJ_G0017994) #32	Krtap17-1 (MGP_SPRETEiJ_G0017993)	Krtap16-1 (MGP_SPRETEiJ_G0017992) #34	Krtap29-1 (MGP_SPRETEiJ_G0017991)	MGP_SPRETEiJ_G0017990 #37	Gm11565 (MGP_SPRETEiJ_G0017989)	MGP_SPRETEiJ_G0017988
Mouse	MODERN SPECIES	2	Acly (ENSMUSG00000020917) #9	Klhl11 (ENSMUSG00000048732) #10	Klhl10 (ENSMUSG00000001558) #11	Nt5c3b (ENSMUSG00000017176) #12	Fkbp10 (ENSMUSG00000001555) #13	P3h4 (ENSMUSG00000006931) #14	Jup (ENSMUSG00000001552) #15	Hap1 (ENSMUSG00000006930)	Gast (ENSMUSG00000017165) #16	Eif1 (ENSMUSG00000035530) ##17	Krt42 (ENSMUSG00000053654) #18	Krt17 (ENSMUSG00000035557)	Krt16 (ENSMUSG00000053797) #20	Krt14 (ENSMUSG00000045545) #19	Krt9 (ENSMUSG00000051617) #21	Krt19 (ENSMUSG00000020911) #22	Krt15 (ENSMUSG00000054146) #23	Krt13 (ENSMUSG00000044041) #24	Krt36 (ENSMUSG00000020916) #25	Krt35 (ENSMUSG00000048013) #26	Krt32 (ENSMUSG00000046095) #27	Krt31 (ENSMUSG00000048981) #32	Krt34 (ENSMUSG00000043485)	Krt33b (ENSMUSG00000057723) #32	Krt33a (ENSMUSG00000035592) #32	Krtap17-1 (ENSMUSG00000078252)	Krtap16-1 (ENSMUSG00000078253) #34	Krtap29-1 (ENSMUSG00000078254)	Krtap9-5 (ENSMUSG00000078255) #37	Krtap31-2 (ENSMUSG00000051481)	Gm11565 (ENSMUSG00000078256)
Ryukyu mouse	MODERN SPECIES	2	Odad4 (MGP_CAROLIEiJ_G0017176) #8	Acly (MGP_CAROLIEiJ_G0017175) #9	Klhl11 (MGP_CAROLIEiJ_G0017174) #10	Klhl10 (MGP_CAROLIEiJ_G0017173) #11	Nt5c3b (MGP_CAROLIEiJ_G0017172) #12	Fkbp10 (MGP_CAROLIEiJ_G0017171) #13	P3h4 (MGP_CAROLIEiJ_G0017170) #14	Jup (MGP_CAROLIEiJ_G0017169) #15	Hap1 (MGP_CAROLIEiJ_G0017168)	Gast (MGP_CAROLIEiJ_G0017167) #16	Krt42 (MGP_CAROLIEiJ_G0017166) #18	Krt17 (MGP_CAROLIEiJ_G0017165)	MGP_CAROLIEiJ_G0017164 #20	Krt14 (MGP_CAROLIEiJ_G0017163) #19	Krt9 (MGP_CAROLIEiJ_G0017162) #21	Krt19 (MGP_CAROLIEiJ_G0017161) #22	Krt15 (MGP_CAROLIEiJ_G0017160) #23	Krt13 (MGP_CAROLIEiJ_G0017159) #24	Krt36 (MGP_CAROLIEiJ_G0017158) #25	Krt35 (MGP_CAROLIEiJ_G0017157) #26	Krt32 (MGP_CAROLIEiJ_G0017156) #27	Krt31 (MGP_CAROLIEiJ_G0017155) #32	Krt34 (MGP_CAROLIEiJ_G0017154)	MGP_CAROLIEiJ_G0017153 #32	Krt33a (MGP_CAROLIEiJ_G0017152) #32	Krtap17-1 (MGP_CAROLIEiJ_G0017151)	Krtap16-1 (MGP_CAROLIEiJ_G0017150) #34	Krtap29-1 (MGP_CAROLIEiJ_G0017149)	MGP_CAROLIEiJ_G0017148 #37	Gm11565 (MGP_CAROLIEiJ_G0017147)	MGP_CAROLIEiJ_G0017146
Shrew mouse	MODERN SPECIES	5	Acly (MGP_PahariEiJ_G0018305) #9	Klhl11 (MGP_PahariEiJ_G0018304) #10	Klhl10 (MGP_PahariEiJ_G0018303) #11	Nt5c3b (MGP_PahariEiJ_G0018302) #12	Fkbp10 (MGP_PahariEiJ_G0018301) #13	P3h4 (MGP_PahariEiJ_G0018300) #14	Jup (MGP_PahariEiJ_G0018299) #15	Hap1 (MGP_PahariEiJ_G0018298)	Gast (MGP_PahariEiJ_G0018297) #16	MGP_PahariEiJ_G0018296 ##17	Krt42 (MGP_PahariEiJ_G0018295) #18	Krt17 (MGP_PahariEiJ_G0018294)	MGP_PahariEiJ_G0018293 #20	Krt14 (MGP_PahariEiJ_G0018292) #19	MGP_PahariEiJ_G0018291 #21	Krt19 (MGP_PahariEiJ_G0018290) #22	Krt15 (MGP_PahariEiJ_G0018289) #23	Krt13 (MGP_PahariEiJ_G0018288) #24	Krt36 (MGP_PahariEiJ_G0018287) #25	Krt35 (MGP_PahariEiJ_G0018286) #26	Krt32 (MGP_PahariEiJ_G0018285) #27	Krt31 (MGP_PahariEiJ_G0018284) #32	Krt34 (MGP_PahariEiJ_G0018283)	Krt33b (MGP_PahariEiJ_G0018282) #32	Krt33a (MGP_PahariEiJ_G0018281) #32	Krtap17-1 (MGP_PahariEiJ_G0018280)	Krtap16-1 (MGP_PahariEiJ_G0018279) #34	Krtap29-1 (MGP_PahariEiJ_G0018278)	MGP_PahariEiJ_G0018277	MGP_PahariEiJ_G0018276	MGP_PahariEiJ_G0018275
Upper Galilee mountains blind mole rat	MODERN SPECIES	912	Klhl11 (ENSNGAG00000020048) #10	Klhl10 (ENSNGAG00000011124) #11	Nt5c3b (ENSNGAG00000000422) #12	Fkbp10 (ENSNGAG00000017675) #13	P3h4 (ENSNGAG00000000360) #14	Jup (ENSNGAG00000000170) #15	ENSNGAG00000019533	Hap1 (ENSNGAG00000007898)	Gast (ENSNGAG00000019585) #16	Eif1 (ENSNGAG00000018937) ##17	Krt42 (ENSNGAG00000019553) #18	Krt17 (ENSNGAG00000012777)	Krt16 (ENSNGAG00000000117) #20	Krt14 (ENSNGAG00000010672) #19	ENSNGAG00000018654 #21	Krt19 (ENSNGAG00000011315) #22	Krt15 (ENSNGAG00000001364) #23	Krt13 (ENSNGAG00000015515) #24	Krt36 (ENSNGAG00000020685) #25	Krt35 (ENSNGAG00000019802) #26	Krt32 (ENSNGAG00000013427) #27	ENSNGAG00000006835 #32	ENSNGAG00000018913 #32	ENSNGAG00000018336 #32	ENSNGAG00000016427 #32	Krtap16-1 (ENSNGAG00000012264) #34	ENSNGAG00000014923 #37	ENSNGAG00000001079	ENSNGAG00000020976	ENSNGAG00000011267	ENSNGAG00000007994
Lesser Egyptian jerboa	MODERN SPECIES	56	Acly (ENSJJAG00000023463) #9	Klhl11 (ENSJJAG00000021286) #10	Klhl10 (ENSJJAG00000023238) #11	Nt5c3b (ENSJJAG00000022142) #12	Fkbp10 (ENSJJAG00000021205) #13	P3h4 (ENSJJAG00000022678) #14	Jup (ENSJJAG00000021441) #15	Hap1 (ENSJJAG00000022760)	Gast (ENSJJAG00000021370) #16	Eif1 (ENSJJAG00000021198) ##17	Krt42 (ENSJJAG00000022125) #18	Krt17 (ENSJJAG00000009622)	Krt16 (ENSJJAG00000022085) #20	Krt14 (ENSJJAG00000023341) #19	ENSJJAG00000022627 #21	Krt19 (ENSJJAG00000023491) #22	Krt15 (ENSJJAG00000023216) #23	Krt13 (ENSJJAG00000002259) #24	Krt36 (ENSJJAG00000021463) #25	Krt35 (ENSJJAG00000022241) #26	Krt32 (ENSJJAG00000021346) #27	ENSJJAG00000021849 #32	ENSJJAG00000022802 #32	ENSJJAG00000021359 #32	ENSJJAG00000021927 #32	ENSJJAG00000022794	ENSJJAG00000006288	ENSJJAG00000005972	ENSJJAG00000022051	ENSJJAG00000006226	Krtap3-1 (ENSJJAG00000006011)
Kangaroo rat	MODERN SPECIES	326	Acly (ENSDORG00000001906) #9	Klhl11 (ENSDORG00000001903) #10	Klhl10 (ENSDORG00000001899) #11	Nt5c3b (ENSDORG00000003263) #12	Fkbp10 (ENSDORG00000001100) #13	P3h4 (ENSDORG00000001103) #14	Jup (ENSDORG00000001104) #15	Hap1 (ENSDORG00000005913)	Gast (ENSDORG00000005917) #16	ENSDORG00000013853 ##17	Krt42 (ENSDORG00000029252) #18	Krt17 (ENSDORG00000016115)	Krt16 (ENSDORG00000016113) #20	Krt14 (ENSDORG00000029977) #19	Krt9 (ENSDORG00000026645) #21	Krt19 (ENSDORG00000006970) #22	Krt15 (ENSDORG00000006968) #23	Krt13 (ENSDORG00000006965) #24	Krt36 (ENSDORG00000006963) #25	Krt35 (ENSDORG00000028712) #26	Krt32 (ENSDORG00000006959) #27	Krt31 (ENSDORG00000025918) #32	ENSDORG00000028392 #32	ENSDORG00000028320	ENSDORG00000024283 #32	ENSDORG00000026701 #37	ENSDORG00000029308	Krtap4-16 (ENSDORG00000029892)	ENSDORG00000001993	ENSDORG00000026358	ENSDORG00000023366
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163841	ENSGT00940000153980.j.a.a #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.b #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135	ENSGT00940000163931	ENSGT00940000154448.b.b.b.b.e.a
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163841	ENSGT00940000153980.j.a.a #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.b #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135	ENSGT00940000163931
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.b.c.a #32	ENSGT00940000163426	ENSGT00940000153980.j.a.b.b.c.b #32	ENSGT00940000153980.j.a.b.b.d #32	ENSGT00860000136155	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00390000001157.B	ENSGT00390000001157.C.gc.b	ENSGT00390000001157.C.gc.a
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.b.b.c.a #32	ENSGT00940000153980.j.a.a #32	ENSGT00940000153980.j.a.b.b.c.b #32	ENSGT00940000153980.j.a.b.b.d #32	ENSGT00940000163416 #37	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443	ENSGT00390000001157.B	ENSGT00390000001157.C.gc.b
Squirrel	MODERN SPECIES	90	DNAJC7 (ENSSTOG00000006122)	CNP (ENSSTOG00000006116) #7	ODAD4 (ENSSTOG00000006075) #8	ACLY (ENSSTOG00000006029) #9	KLHL11 (ENSSTOG00000026300) #10	KLHL10 (ENSSTOG00000005983) #11	NT5C3B (ENSSTOG00000005969) #12	FKBP10 (ENSSTOG00000005956) #13	P3H4 (ENSSTOG00000028974) #14	JUP (ENSSTOG00000005910) #15	HAP1 (ENSSTOG00000020475)	GAST (ENSSTOG00000005906) #16	EIF1 (ENSSTOG00000002719) #17	ENSSTOG00000024700 #18	KRT16 (ENSSTOG00000014410) #20	KRT19 (ENSSTOG00000014403) #22	KRT15 (ENSSTOG00000014415) #23	ENSSTOG00000014393 #24	KRT36 (ENSSTOG00000014383) #25	KRT35 (ENSSTOG00000034016) #26	KRT32 (ENSSTOG00000014374) #27	ENSSTOG00000034013 #32	ENSSTOG00000013178 #32	ENSSTOG00000033523 #32	ENSSTOG00000013195 #32	ENSSTOG00000031988	ENSSTOG00000032994 #37	ENSSTOG00000033084	ENSSTOG00000027734	ENSSTOG00000023947	ENSSTOG00000029114
Arctic ground squirrel	MODERN SPECIES	46	ACLY (ENSUPAG00010009305) #9	KLHL11 (ENSUPAG00010009300) #10	KLHL10 (ENSUPAG00010009288) #11	NT5C3B (ENSUPAG00010009269) #12	FKBP10 (ENSUPAG00010009227) #13	P3H4 (ENSUPAG00010009210) #14	JUP (ENSUPAG00010009167) #15	HAP1 (ENSUPAG00010009150)	GAST (ENSUPAG00010009145) #16	ENSUPAG00010009142 ##17	ENSUPAG00010009125 #18	KRT17 (ENSUPAG00010009109)	KRT16 (ENSUPAG00010009069) #20	KRT14 (ENSUPAG00010009018) #19	KRT9 (ENSUPAG00010009000) #21	KRT19 (ENSUPAG00010008984) #22	KRT15 (ENSUPAG00010008970) #23	ENSUPAG00010008946 #24	KRT36 (ENSUPAG00010008919) #25	KRT35 (ENSUPAG00010008898) #26	KRT32 (ENSUPAG00010008877) #27	ENSUPAG00010008855 #32	ENSUPAG00010008841 #32	ENSUPAG00010008825 #32	ENSUPAG00010008817	KRTAP16-1 (ENSUPAG00010008810) #34	KRTAP29-1 (ENSUPAG00010008797)	ENSUPAG00010008769	ENSUPAG00010008754	ENSUPAG00010008750	ENSUPAG00010008626
Alpin marmot	MODERN SPECIES	42	ENSMMMG00000006252 #8	ACLY (ENSMMMG00000006262) #9	KLHL11 (ENSMMMG00000006432) #10	KLHL10 (ENSMMMG00000006440) #11	NT5C3B (ENSMMMG00000006451) #12	FKBP10 (ENSMMMG00000006462) #13	JUP (ENSMMMG00000006521) #15	HAP1 (ENSMMMG00000006582)	GAST (ENSMMMG00000006600) #16	ENSMMMG00000006606 ##17	ENSMMMG00000006617 #18	KRT17 (ENSMMMG00000006626)	KRT16 (ENSMMMG00000006635) #20	KRT14 (ENSMMMG00000006660) #19	KRT9 (ENSMMMG00000006665) #21	KRT19 (ENSMMMG00000006685) #22	KRT15 (ENSMMMG00000006700) #23	ENSMMMG00000006714 #24	KRT36 (ENSMMMG00000006729) #25	KRT35 (ENSMMMG00000006741) #26	KRT32 (ENSMMMG00000006755) #27	ENSMMMG00000006764 #32	KRT34 (ENSMMMG00000006778)	ENSMMMG00000006789 #32	ENSMMMG00000006802 #32	ENSMMMG00000007015	KRTAP16-1 (ENSMMMG00000007017) #34	ENSMMMG00000007037	ENSMMMG00000007061	ENSMMMG00000007085	ENSMMMG00000007146
Eurasian red squirrel	MODERN SPECIES	12	NT5C3B (ENSSVLG00005000754) #12	FKBP10 (ENSSVLG00005000785) #13	P3H4 (ENSSVLG00005000841) #14	JUP (ENSSVLG00005000914) #15	ENSSVLG00005001006 #14	ENSSVLG00005001022	HAP1 (ENSSVLG00005001065)	ENSSVLG00005001138	GAST (ENSSVLG00005001171) #16	EIF1 (ENSSVLG00005001188) #17	ENSSVLG00005001226 #18	KRT17 (ENSSVLG00005001282)	KRT16 (ENSSVLG00005001321) #20	KRT14 (ENSSVLG00005001357) #19	ENSSVLG00005001389 #21	KRT19 (ENSSVLG00005001412) #22	KRT15 (ENSSVLG00005001448) #23	KRT13 (ENSSVLG00005001499)	KRT36 (ENSSVLG00005001573) #25	KRT35 (ENSSVLG00005001626) #26	KRT32 (ENSSVLG00005001680) #27	ENSSVLG00005001717	ENSSVLG00005001747 #32	ENSSVLG00005001787 #32	ENSSVLG00005001818 #32	KRTAP17-1 (ENSSVLG00005001846) #33	KRTAP16-1 (ENSSVLG00005001860) #34	ENSSVLG00005001937	ENSSVLG00005002085	ENSSVLG00005002159	ENSSVLG00005002182
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163426	ENSGT00940000153980.j.a.a #32	ENSGT00940000163658 #34	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000159486.f	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.a #32	ENSGT00940000163658 #34	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000163931	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000153980.j.a.a #32	ENSGT00940000163658 #34	ENSGT00940000156135	ENSGT00940000154448.b.b.b.b.e.b.b	ENSGT00940000163931	ENSGT00940000159486.e.a	ENSGT00940000154448.b.b.b.b.f	ENSGT00940000155433	ENSGT00940000160295	ENSGT00940000160443
Long-tailed chinchilla	MODERN SPECIES	158	DNAJC7 (ENSCLAG00000015312)	CNP (ENSCLAG00000015883) #7	ODAD4 (ENSCLAG00000014476) #8	ACLY (ENSCLAG00000014600) #9	KLHL11 (ENSCLAG00000017003) #10	KLHL10 (ENSCLAG00000017306) #11	NT5C3B (ENSCLAG00000015634) #12	FKBP10 (ENSCLAG00000016960) #13	P3H4 (ENSCLAG00000015645) #14	JUP (ENSCLAG00000015947) #15	GAST (ENSCLAG00000016052) #16	ENSCLAG00000015732 ##17	ENSCLAG00000015351 #18	KRT16 (ENSCLAG00000016344) #20	KRT9 (ENSCLAG00000016583) #21	KRT19 (ENSCLAG00000015425) #22	KRT15 (ENSCLAG00000013658) #23	ENSCLAG00000015341 #24	ENSCLAG00000016636 #18	ENSCLAG00000017990	KRTAP16-1 (ENSCLAG00000016554) #34	ENSCLAG00000015082	ENSCLAG00000017906	ENSCLAG00000015077	ENSCLAG00000015152	ENSCLAG00000018011	ENSCLAG00000013798	ENSCLAG00000018055	ENSCLAG00000015264	ENSCLAG00000017986	ENSCLAG00000018003
Degu	MODERN SPECIES	97	ODAD4 (ENSODEG00000017939) #8	ACLY (ENSODEG00000018143) #9	KLHL11 (ENSODEG00000017875) #10	KLHL10 (ENSODEG00000018015) #11	NT5C3B (ENSODEG00000018081) #12	FKBP10 (ENSODEG00000017908) #13	P3H4 (ENSODEG00000017979) #14	JUP (ENSODEG00000017964) #15	GAST (ENSODEG00000017853) #16	EIF1 (ENSODEG00000018101) #17	ENSODEG00000017881 #18	KRT17 (ENSODEG00000017862)	KRT16 (ENSODEG00000017857) #20	KRT14 (ENSODEG00000017873) #19	KRT9 (ENSODEG00000017935) #21	KRT19 (ENSODEG00000017884) #22	KRT15 (ENSODEG00000017969) #23	ENSODEG00000017822 #24	KRT36 (ENSODEG00000017942) #25	KRT35 (ENSODEG00000017892) #26	KRT32 (ENSODEG00000017895) #27	ENSODEG00000017837 #32	ENSODEG00000017841 #32	ENSODEG00000017956 #32	ENSODEG00000017876 #32	KRTAP16-1 (ENSODEG00000017880) #34	ENSODEG00000017810	ENSODEG00000017804	ENSODEG00000017801	ENSODEG00000017790	ENSODEG00000017966
Guinea pig	MODERN SPECIES	53	ZNF385C (ENSCPOG00000006417)	NKIRAS2 (ENSCPOG00000037805)	DNAJC7 (ENSCPOG00000023384)	CNP (ENSCPOG00000020940) #7	ODAD4 (ENSCPOG00000023846) #8	ACLY (ENSCPOG00000010813) #9	KLHL11 (ENSCPOG00000021621) #10	KLHL10 (ENSCPOG00000002818) #11	NT5C3B (ENSCPOG00000027400) #12	FKBP10 (ENSCPOG00000020998) #13	P3H4 (ENSCPOG00000026262) #14	JUP (ENSCPOG00000003295) #15	GAST (ENSCPOG00000009853) #16	ENSCPOG00000030441 ##17	KRT9 (ENSCPOG00000033124) #21	KRT19 (ENSCPOG00000035147) #22	KRT14 (ENSCPOG00000006839) #19	ENSCPOG00000034373 #24	KRT36 (ENSCPOG00000032028) #25	KRT35 (ENSCPOG00000030708) #26	ENSCPOG00000038800 #32	ENSCPOG00000032896 #32	ENSCPOG00000032218 #32	ENSCPOG00000039793 #32	ENSCPOG00000025665	KRTAP16-1 (ENSCPOG00000020936) #34	ENSCPOG00000032008	ENSCPOG00000005150	ENSCPOG00000032446	ENSCPOG00000032541	ENSCPOG00000035322
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.j.a.b.a.b #32	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000153980.j.b #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000163416 #37	ENSGT00940000163931
Pika	MODERN SPECIES	3821			ZNF385C (ENSOPRG00000008120)	NKIRAS2 (ENSOPRG00000008113)	DNAJC7 (ENSOPRG00000008093)	ODAD4 (ENSOPRG00000008065) #8	ACLY (ENSOPRG00000008041) #9	ENSOPRG00000008022 #10	KLHL10 (ENSOPRG00000008014) #11	JUP (ENSOPRG00000007992) #15	ENSOPRG00000007970	GAST (ENSOPRG00000007965) #16	KRT17 (ENSOPRG00000007946)	KRT16 (ENSOPRG00000007938) #20	KRT14 (ENSOPRG00000007922) #19	KRT19 (ENSOPRG00000007908) #22	KRT15 (ENSOPRG00000007893) #23	ENSOPRG00000007873 #24	KRT36 (ENSOPRG00000007861) #25	KRT35 (ENSOPRG00000007848) #26	KRT32 (ENSOPRG00000007824) #27	ENSOPRG00000007809 #28	ENSOPRG00000007790 #32	KRT34 (ENSOPRG00000007768)	ENSOPRG00000007755	ENSOPRG00000007744	KRTAP29-1 (ENSOPRG00000019013)	ENSOPRG00000018166 #37
Primates	ANCESTRAL SPECIES	3	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.i.a #32	ENSGT00940000163426	ENSGT00940000163841	ENSGT00940000153980.j #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.i.a #32	ENSGT00940000163426	ENSGT00950000183407 #33	ENSGT00940000164459	ENSGT00940000156135	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.i.a #32	ENSGT00940000163426	ENSGT00950000183407 #33	ENSGT00940000164459	ENSGT00940000156135	ENSGT00940000163416 #37	ENSGT00940000164263	ENSGT00940000154448.b.b.b.b
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.i.a #32	ENSGT00940000163426	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000162203	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382
Coquerels sifaka	MODERN SPECIES	120	CYB561 (ENSPCOG00000014582)	TANC2 (ENSPCOG00000017880)	MARCHF10 (ENSPCOG00000017830)	MRC2 (ENSPCOG00000024139)	TLK2 (ENSPCOG00000022754)	ENSPCOG00000022425	ENSPCOG00000016098	ITGB3 (ENSPCOG00000006314)	HAP1 (ENSPCOG00000000955)	GAST (ENSPCOG00000022487) #16	EIF1 (ENSPCOG00000025534) #17	KRT17 (ENSPCOG00000028572)	KRT16 (ENSPCOG00000028567) #20	KRT14 (ENSPCOG00000019020) #19	KRT9 (ENSPCOG00000016464) #21	KRT19 (ENSPCOG00000021655) #22	KRT15 (ENSPCOG00000020434) #23	KRT13 (ENSPCOG00000015381)	KRT36 (ENSPCOG00000014970) #25	KRT35 (ENSPCOG00000022990) #26	KRT32 (ENSPCOG00000025475) #27	ENSPCOG00000019743	ENSPCOG00000023315 #28	ENSPCOG00000021936	KRTAP17-1 (ENSPCOG00000028537) #33	KRTAP29-1 (ENSPCOG00000019509)	ENSPCOG00000013137	ENSPCOG00000022603 #37	ENSPCOG00000017090	ENSPCOG00000026553	ENSPCOG00000014377
Greater bamboo lemur	MODERN SPECIES	92	ODAD4 (ENSPSMG00000012856) #8	ACLY (ENSPSMG00000013164) #9	KLHL11 (ENSPSMG00000013768) #10	KLHL10 (ENSPSMG00000013796) #11	NT5C3B (ENSPSMG00000013841) #12	FKBP10 (ENSPSMG00000013875) #13	P3H4 (ENSPSMG00000013894) #14	JUP (ENSPSMG00000013930) #15	HAP1 (ENSPSMG00000013966)	GAST (ENSPSMG00000014008) #16	EIF1 (ENSPSMG00000014023) ##17	KRT17 (ENSPSMG00000014105)	KRT16 (ENSPSMG00000014155) #20	KRT14 (ENSPSMG00000014171) #19	KRT9 (ENSPSMG00000014177) #21	KRT19 (ENSPSMG00000014194) #22	KRT15 (ENSPSMG00000014210) #23	KRT13 (ENSPSMG00000014239)	KRT36 (ENSPSMG00000014251) #25	KRT35 (ENSPSMG00000014276) #26	KRT32 (ENSPSMG00000014291) #27	ENSPSMG00000014300	ENSPSMG00000014316 #28	ENSPSMG00000014346 #32	KRT34 (ENSPSMG00000014385)	ENSPSMG00000014403 #32
Mouse lemur	MODERN SPECIES	7	ODAD4 (ENSMICG00000011891) #8	ACLY (ENSMICG00000011865) #9	KLHL11 (ENSMICG00000047724) #10	KLHL10 (ENSMICG00000011862) #11	NT5C3B (ENSMICG00000011851) #12	FKBP10 (ENSMICG00000011846) #13	P3H4 (ENSMICG00000011838) #14	JUP (ENSMICG00000011829) #15	HAP1 (ENSMICG00000026602)	GAST (ENSMICG00000011819) #16	EIF1 (ENSMICG00000011816) #17	KRT17 (ENSMICG00000011795)	KRT16 (ENSMICG00000011787) #20	KRT14 (ENSMICG00000011774) #19	KRT9 (ENSMICG00000012911) #21	KRT19 (ENSMICG00000033033) #22	KRT15 (ENSMICG00000012890) #23	KRT13 (ENSMICG00000012884)	KRT36 (ENSMICG00000012877) #25	KRT35 (ENSMICG00000012869) #26	KRT32 (ENSMICG00000012857) #27	ENSMICG00000012831	ENSMICG00000012845 #28	ENSMICG00000012824 #32	KRT34 (ENSMICG00000034836)	ENSMICG00000012804 #32	ENSMICG00000034958 #32	KRTAP17-1 (ENSMICG00000007013) #33	KRTAP29-1 (ENSMICG00000030099)	ENSMICG00000047774	ENSMICG00000046147
Bushbaby	MODERN SPECIES	133	ODAD4 (ENSOGAG00000004644) #8	ACLY (ENSOGAG00000004641) #9	ENSOGAG00000034361 #10	KLHL10 (ENSOGAG00000000451) #11	NT5C3B (ENSOGAG00000027167) #12	FKBP10 (ENSOGAG00000009532) #13	P3H4 (ENSOGAG00000009525) #14	JUP (ENSOGAG00000009523) #15	HAP1 (ENSOGAG00000009517)	GAST (ENSOGAG00000009512) #16	EIF1 (ENSOGAG00000031577) #17	KRT17 (ENSOGAG00000032869)	KRT16 (ENSOGAG00000025817) #20	KRT14 (ENSOGAG00000011471) #19	KRT9 (ENSOGAG00000011469) #21	KRT19 (ENSOGAG00000024306) #22	KRT15 (ENSOGAG00000011466) #23	ENSOGAG00000011464 #24	KRT36 (ENSOGAG00000011461) #25	KRT35 (ENSOGAG00000031733) #26	KRT32 (ENSOGAG00000011449) #27	ENSOGAG00000011453 #28	ENSOGAG00000011459 #28	ENSOGAG00000011441 #32	ENSOGAG00000031966 #32	ENSOGAG00000011446 #32	ENSOGAG00000034704	ENSOGAG00000003105	KRTAP4-5 (ENSOGAG00000003102)	ENSOGAG00000034870	ENSOGAG00000025341
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000163841	ENSGT00940000153980.j #32	ENSGT00940000163426	ENSGT00940000153980.i.a #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135
Tarsier	MODERN SPECIES	6891	ACLY (ENSTSYG00000010520) #9	KLHL11 (ENSTSYG00000012889) #10	KLHL10 (ENSTSYG00000012888) #11	NT5C3B (ENSTSYG00000034020) #12	FKBP10 (ENSTSYG00000032317) #13	P3H4 (ENSTSYG00000026257) #14	JUP (ENSTSYG00000033406) #15	ENSTSYG00000012044	HAP1 (ENSTSYG00000031579)	GAST (ENSTSYG00000032402) #16	EIF1 (ENSTSYG00000031918) #17	KRT17 (ENSTSYG00000014310)	KRT16 (ENSTSYG00000027010) #20	KRT14 (ENSTSYG00000033735) #19	ENSTSYG00000031839 #21	KRT19 (ENSTSYG00000005685) #22	KRT15 (ENSTSYG00000013851) #23	KRT13 (ENSTSYG00000036392)	KRT36 (ENSTSYG00000013056) #25	KRT35 (ENSTSYG00000014317) #26	KRT32 (ENSTSYG00000014314) #27	ENSTSYG00000005419	ENSTSYG00000005347 #28	ENSTSYG00000010852 #32	KRT34 (ENSTSYG00000011074)	ENSTSYG00000003568 #32	ENSTSYG00000010831 #32	KRTAP17-1 (ENSTSYG00000026638) #33
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000162088 #28	ENSGT00940000161991 #27	ENSGT00940000153980 #32	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135	ENSGT00940000163931	ENSGT00940000162736	ENSGT00940000155433	ENSGT00940000160443	ENSGT00390000001157.A.b
Xenarthra	ANCESTRAL SPECIES	204												ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000163247 #18	ENSGT00940000154602.a #19	ENSGT00940000155258.t #22	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000153980 #32	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000154448.b.b.b.b	ENSGT00940000159486	ENSGT00940000155433	ENSGT00940000160443
Armadillo	MODERN SPECIES	2840												GAST (ENSDNOG00000040703) #16	EIF1 (ENSDNOG00000007856) #17	ENSDNOG00000005001 #18	KRT14 (ENSDNOG00000001662) #19	KRT19 (ENSDNOG00000037692) #22	ENSDNOG00000000676 #24	KRT36 (ENSDNOG00000013320) #25	KRT35 (ENSDNOG00000013305) #26	KRT32 (ENSDNOG00000000683) #27	ENSDNOG00000013236 #32	ENSDNOG00000003825 #32	KRTAP16-1 (ENSDNOG00000024820) #34	KRTAP29-1 (ENSDNOG00000025251)	ENSDNOG00000013192	ENSDNOG00000037083	ENSDNOG00000015965	ENSDNOG00000000089	ENSDNOG00000041518
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b ##17	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000162088 #28	ENSGT00940000161991 #27	ENSGT00940000153980 #32	ENSGT00940000163426	ENSGT00940000163658 #34	ENSGT00940000156135	ENSGT00940000163931	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.b ##17	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000162088 #28	ENSGT00940000161991 #27	ENSGT00940000153980 #32	ENSGT00940000163426	ENSGT00940000163658 #34	ENSGT00940000156135	ENSGT00940000163931	ENSGT00940000160443	ENSGT00390000001157.A.b	ENSGT00390000001157.C	ENSGT00940000161968
Elephant	MODERN SPECIES	310	DNAJC7 (ENSLAFG00000013944)	CNP (ENSLAFG00000013941) #7	ODAD4 (ENSLAFG00000022415) #8	ACLY (ENSLAFG00000006961) #9	KLHL11 (ENSLAFG00000006960) #10	KLHL10 (ENSLAFG00000006967) #11	NT5C3B (ENSLAFG00000014155) #12	FKBP10 (ENSLAFG00000021916) #13	P3H4 (ENSLAFG00000005055) #14	JUP (ENSLAFG00000002854) #15	HAP1 (ENSLAFG00000008228)	GAST (ENSLAFG00000008225) #16	EIF1 (ENSLAFG00000002852) ##17	KRT17 (ENSLAFG00000011402)	KRT14 (ENSLAFG00000017548) #19	KRT19 (ENSLAFG00000027762) #22	KRT15 (ENSLAFG00000017535) #23	ENSLAFG00000004694 #24	KRT36 (ENSLAFG00000004692) #25	KRT35 (ENSLAFG00000004691) #26	ENSLAFG00000017206 #28	KRT32 (ENSLAFG00000017179) #27	ENSLAFG00000017176	ENSLAFG00000028624 #34	ENSLAFG00000020912	ENSLAFG00000007437	ENSLAFG00000007429	ENSLAFG00000007428	ENSLAFG00000007424	ENSLAFG00000007421	ENSLAFG00000020659
Hyrax	MODERN SPECIES	8379																KRT19 (ENSPCAG00000001651) #22	KRT15 (ENSPCAG00000001673) #23	ENSPCAG00000001721 #24
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	6465																ENSETEG00000007881 #22	ENSETEG00000007876 ##24
Tenrec	MODERN SPECIES	8991																ENSETEG00000000447 #22	TPD52 (ENSETEG00000000450)
Marsupialia	ANCESTRAL SPECIES	46								ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00390000015789.c.b ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.d #20	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088.b.b #28	ENSGT00940000163444	ENSGT00940000162088.b.a #28	ENSGT00940000153980.db.b #32	ENSGT00940000153980.eb #32	ENSGT00940000163841	ENSGT00940000153980.db.a #32	ENSGT00950000183407 #33	ENSGT00940000159486	ENSGT00940000163931
Marsupialia_b	ANCESTRAL SPECIES	43								ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00390000015789.c.b ##17	ENSGT00940000163247 #18	ENSGT00940000160681.C	ENSGT00940000154602.d #20	ENSGT00940000162894 #21	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088.b.a #28	ENSGT00940000153980.db.b #32	ENSGT00940000159486	ENSGT00940000163931.f	ENSGT00940000155433.bc	ENSGT00940000160295	ENSGT00940000160443
Diprotodontia	ANCESTRAL SPECIES	91										ENSGT00940000163931.f	ENSGT00940000155433.bc	ENSGT00940000160443	ENSGT00390000001157.B	ENSGT00390000001157.C	ENSGT00940000161968	ENSGT00940000155258.t #22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088.b.a #28	ENSGT00940000163841	ENSGT00940000153980.eb #32	ENSGT00940000159486	ENSGT01090000260762	ENSGT00940000153980.db.a #32	ENSGT00950000183407 #33
Wallaby	MODERN SPECIES	8000																KRT19 (ENSMEUG00000016158) #22	ENSMEUG00000016142 #23
Tasmanian devil	MODERN SPECIES	3	KLHL11 (ENSSHAG00000020775) #10	KLHL10 (ENSSHAG00000001640) #11	NT5C3B (ENSSHAG00000002012) #12	FKBP10 (ENSSHAG00000003034) #13	P3H4 (ENSSHAG00000002449) #14	JUP (ENSSHAG00000004334) #15	ENSSHAG00000022578	ENSSHAG00000005125	GAST (ENSSHAG00000005479) #16	ENSSHAG00000024650 ##17	ENSSHAG00000006799 #18	KRT17 (ENSSHAG00000006929)	ENSSHAG00000007222 #20	ENSSHAG00000007493 #20	KRT9 (ENSSHAG00000001231) #21	KRT19 (ENSSHAG00000003178) #22	KRT15 (ENSSHAG00000003577) #23	KRT13 (ENSSHAG00000004067)	KRT36 (ENSSHAG00000004477) #25	KRT35 (ENSSHAG00000004914) #26	KRT32 (ENSSHAG00000005214) #27	ENSSHAG00000022141 #28	ENSSHAG00000006042 #28	ENSSHAG00000006206 #28	ENSSHAG00000006468 #32	ENSSHAG00000032250 #32	ENSSHAG00000021356 #32	ENSSHAG00000023416 #32	ENSSHAG00000026307	ENSSHAG00000031430	ENSSHAG00000029659
Sauria	ANCESTRAL SPECIES	26	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #22	ENSGT00390000015789.d ##17	ENSGT00940000163247 #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##24	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000159655	ENSGT00390000003628.b
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #22	ENSGT00390000015789.d ##17	ENSGT00940000163247 #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##24	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000160849.p.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b
Archosauria	ANCESTRAL SPECIES	20	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000160849.p.a	ENSGT00940000161783.b	ENSGT00960000190892	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000165938
Aves	ANCESTRAL SPECIES	26	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000165820.B	ENSGT00950000183311	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.c	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.c	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557	ENSGT01080000258839
Japanese quail	MODERN SPECIES	19	ACLY (ENSCJPG00005004772) #9	KLHL11 (ENSCJPG00005004771) #10	KLHL10 (ENSCJPG00005004770) #11	NT5C3B (ENSCJPG00005004769) #12	FKBP10 (ENSCJPG00005004766) #13	P3H4 (ENSCJPG00005004763) #14	JUP (ENSCJPG00005004757) #15	ENSCJPG00005004756	ENSCJPG00005004601	EIF1 (ENSCJPG00005004600) #17	ENSCJPG00005004598 #18	KRT13 (ENSCJPG00005004597)	ENSCJPG00005004596	ENSCJPG00005004595	ENSCJPG00005004594	KRT19 (ENSCJPG00005004587) #22	KRT15 (ENSCJPG00005004586) ##24	KRT23 (ENSCJPG00005004577)	KRT20 (ENSCJPG00005004576)	KRT12 (ENSCJPG00005004575)	KRT222 (ENSCJPG00005004574)	SMARCE1 (ENSCJPG00005004573)	CCR7 (ENSCJPG00005004572)	TNS4 (ENSCJPG00005004571)	IGFBP4 (ENSCJPG00005004570)	ENSCJPG00005004568	TOP2A (ENSCJPG00005002732)	RARA (ENSCJPG00005002716)	CDC6 (ENSCJPG00005002714)	WIPF2 (ENSCJPG00005002712)	RAPGEFL1 (ENSCJPG00005002710)
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.d	ENSGT00950000182969.B.c.a.a.c.f.a.c	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557	ENSGT01080000258839
Chicken	MODERN SPECIES	19	NT5C3B (ENSGALG00010022747) #12	FKBP10 (ENSGALG00010022656) #13	P3H4 (ENSGALG00010022608) #14	JUP (ENSGALG00010021261) #15	ENSGALG00010021221	ENSGALG00010021209	EIF1 (ENSGALG00010022682) #17	KRT17 (ENSGALG00010022946) #18	KRT14 (ENSGALG00010026690) #18	ENSGALG00010023183	ENSGALG00010026731	ENSGALG00010023089	ENSGALG00010026755	ENSGALG00010026719	ENSGALG00010022953	KRT24 (ENSGALG00010026706) #22	KRT13 (ENSGALG00010022872) ##24	KRT23 (ENSGALG00010022817)	KRT40 (ENSGALG00010022786)	KRT12 (ENSGALG00010022765)	KRT222 (ENSGALG00010022725)	SMARCE1 (ENSGALG00010022547)	CCR7 (ENSGALG00010022529)	TNS4 (ENSGALG00010022522)	IGFBP4 (ENSGALG00010022511)	ENSGALG00010022502	TOP2A (ENSGALG00010022483)	RARA (ENSGALG00010024581)	CDC6 (ENSGALG00010024548)	WIPF2 (ENSGALG00010024541)	RAPGEFL1 (ENSGALG00010024539)
Turkey	MODERN SPECIES	21									ENSMGAG00000019618	ENSMGAG00000009314	ENSMGAG00000002851	TNS4 (ENSMGAG00000021108)	ENSMGAG00000002887	ENSMGAG00000002880	ENSMGAG00000022408	KRT19 (ENSMGAG00000003084) #22	KRT23 (ENSMGAG00000003057)	KRT20 (ENSMGAG00000016371)	KRT12 (ENSMGAG00000017405)	KRT222 (ENSMGAG00000002908)	ENSMGAG00000002913	ENSMGAG00000020999	ENSMGAG00000016744	ENSMGAG00000003113 #24	ENSMGAG00000016911	ENSMGAG00000017065	ENSMGAG00000016949	ENSMGAG00000016477 #17	ENSMGAG00000016610	ENSMGAG00000016750	ENSMGAG00000010064 #15
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Great tit	MODERN SPECIES	20	ACLY (ENSPMJG00000001014) #9	KLHL11 (ENSPMJG00000001012) #10	KLHL10 (ENSPMJG00000001010) #11	NT5C3B (ENSPMJG00000001008) #12	FKBP10 (ENSPMJG00000001007) #13	P3H4 (ENSPMJG00000001004) #14	JUP (ENSPMJG00000000991) #15	ENSPMJG00000000941	EIF1 (ENSPMJG00000000936) ##17	ENSPMJG00000000917 #18	KRT13 (ENSPMJG00000000913)	ENSPMJG00000000768	ENSPMJG00000000388	ENSPMJG00000000358	ENSPMJG00000000335	KRT19 (ENSPMJG00000000323) #22	KRT15 (ENSPMJG00000000316) ##24	KRT23 (ENSPMJG00000000306)	KRT20 (ENSPMJG00000000284)	KRT12 (ENSPMJG00000000279)	KRT222 (ENSPMJG00000000276)	SMARCE1 (ENSPMJG00000000262)	CCR7 (ENSPMJG00000000255)	TNS4 (ENSPMJG00000000210)	IGFBP4 (ENSPMJG00000000187)	ENSPMJG00000000173	TOP2A (ENSPMJG00000000127)	GJD3 (ENSPMJG00000000120)	RARA (ENSPMJG00000000114)	CDC6 (ENSPMJG00000000063)	ENSPMJG00000017939
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Passeriformes_g	ANCESTRAL SPECIES	26	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Medium ground finch	MODERN SPECIES	356							ENSGFOG00000006880 #18	ENSGFOG00000006883	ENSGFOG00000006890	ENSGFOG00000006896	ENSGFOG00000006908	ENSGFOG00000006918	ENSGFOG00000006927	ENSGFOG00000006944	ENSGFOG00000006956	KRT19 (ENSGFOG00000007054) #22	KRT15 (ENSGFOG00000007061) ##24	KRT23 (ENSGFOG00000007070)	KRT20 (ENSGFOG00000007085)	KRT12 (ENSGFOG00000007092)	ENSGFOG00000007105	KRT222 (ENSGFOG00000007111)	SMARCE1 (ENSGFOG00000007119)	CCR7 (ENSGFOG00000007134)	TNS4 (ENSGFOG00000007151)	IGFBP4 (ENSGFOG00000007229)	TOP2A (ENSGFOG00000007236)	RARA (ENSGFOG00000007269)
Passeroidea	ANCESTRAL SPECIES	32	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Zebra finch	MODERN SPECIES	20	KLHL11 (ENSTGUG00000027938) #10	KLHL10 (ENSTGUG00000013823) #11	NT5C3B (ENSTGUG00000013789) #12	FKBP10 (ENSTGUG00000002431) #13	P3H4 (ENSTGUG00000002427) #14	JUP (ENSTGUG00000002410) #15	ENSTGUG00000027542	ENSTGUG00000027189	EIF1 (ENSTGUG00000026666) #17	ENSTGUG00000024454	KRT13 (ENSTGUG00000016947)	ENSTGUG00000002392	ENSTGUG00000002388	ENSTGUG00000019538	ENSTGUG00000016530	KRT19 (ENSTGUG00000002393) #22	KRT23 (ENSTGUG00000018328)	KRT20 (ENSTGUG00000026084)	KRT12 (ENSTGUG00000002372)	KRT222 (ENSTGUG00000002371)	SMARCE1 (ENSTGUG00000002357)	CCR7 (ENSTGUG00000002356)	TNS4 (ENSTGUG00000021496)	IGFBP4 (ENSTGUG00000002346)	TOP2A (ENSTGUG00000002312)	ENSTGUG00000021616	GJD3 (ENSTGUG00000002311)	RARA (ENSTGUG00000022927)	CDC6 (ENSTGUG00000002293)	ENSTGUG00000020027	ENSTGUG00000002288
Common canary	MODERN SPECIES	42	NT5C3B (ENSSCAG00000007493) #12	FKBP10 (ENSSCAG00000007514) #13	P3H4 (ENSSCAG00000007526) #14	JUP (ENSSCAG00000007549) #15	ENSSCAG00000007584	ENSSCAG00000007653	EIF1 (ENSSCAG00000007656) #17	ENSSCAG00000007660 #18	ENSSCAG00000007664	ENSSCAG00000007670	ENSSCAG00000007673	ENSSCAG00000007681	ENSSCAG00000007686	ENSSCAG00000007692	ENSSCAG00000007701	KRT19 (ENSSCAG00000007706) #22	KRT15 (ENSSCAG00000007710) ##24	KRT23 (ENSSCAG00000007713)	KRT20 (ENSSCAG00000007719)	KRT12 (ENSSCAG00000007734)	KRT222 (ENSSCAG00000007752)	SMARCE1 (ENSSCAG00000007757)	CCR7 (ENSSCAG00000007768)	TNS4 (ENSSCAG00000007773)	IGFBP4 (ENSSCAG00000007784)	ENSSCAG00000007790	TOP2A (ENSSCAG00000007794)	RARA (ENSSCAG00000007824)	GJD3 (ENSSCAG00000007939)	CDC6 (ENSSCAG00000007941)	WIPF2 (ENSSCAG00000007946)
Flycatcher	MODERN SPECIES	19	KLHL10 (ENSFALG00000000629) #11	NT5C3B (ENSFALG00000000628) #12	FKBP10 (ENSFALG00000000626) #13	P3H4 (ENSFALG00000000622) #14	JUP (ENSFALG00000000297) #15	ENSFALG00000000310	ENSFALG00000000312	EIF1 (ENSFALG00000000314) #17	ENSFALG00000026044	ENSFALG00000000318 #18	ENSFALG00000023326	ENSFALG00000027809	ENSFALG00000000327	ENSFALG00000000331	ENSFALG00000000335	KRT19 (ENSFALG00000000341) #22	KRT15 (ENSFALG00000000346) ##24	KRT23 (ENSFALG00000000349)	KRT20 (ENSFALG00000000350)	KRT12 (ENSFALG00000000351)	KRT222 (ENSFALG00000000359)	SMARCE1 (ENSFALG00000000362)	CCR7 (ENSFALG00000000373)	TNS4 (ENSFALG00000000379)	IGFBP4 (ENSFALG00000023499)	ENSFALG00000026880	TOP2A (ENSFALG00000000389)	RARA (ENSFALG00000000392)	CDC6 (ENSFALG00000000393)	ENSFALG00000023333	RAPGEFL1 (ENSFALG00000000406)
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000163247.u #18	ENSGT00940000163247.t #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a	ENSGT00940000155258.t #22	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557	ENSGT00940000160144
Golden eagle	MODERN SPECIES	24	P3H4 (ENSACCG00020002413) #14	JUP (ENSACCG00020002451) #15	ENSACCG00020002472	ENSACCG00020002490	ENSACCG00020002498	EIF1 (ENSACCG00020002514) #17	ENSACCG00020002559 #18	ENSACCG00020002592 #18	ENSACCG00020002614	ENSACCG00020002631	ENSACCG00020002646 #25	ENSACCG00020002661	ENSACCG00020002680	ENSACCG00020002765	ENSACCG00020002840	KRT19 (ENSACCG00020002860) #22	KRT15 (ENSACCG00020002881) ##24	KRT23 (ENSACCG00020002903)	KRT20 (ENSACCG00020002922)	KRT12 (ENSACCG00020002943)	KRT222 (ENSACCG00020002958)	SMARCE1 (ENSACCG00020003022)	CCR7 (ENSACCG00020003054)	TNS4 (ENSACCG00020003073)	IGFBP4 (ENSACCG00020003106)	ENSACCG00020003118	TOP2A (ENSACCG00020003154)	RARA (ENSACCG00020003210)	CDC6 (ENSACCG00020003236)	ENSACCG00020003260	ENSACCG00020003276
Australian saltwater crocodile	MODERN SPECIES	61	NKIRAS2 (ENSCPRG00005005343)	DNAJC7 (ENSCPRG00005005328)	CNP (ENSCPRG00005005320) #7	ODAD4 (ENSCPRG00005005310) #8	ACLY (ENSCPRG00005003731) #9	KLHL11 (ENSCPRG00005003587) #10	KLHL10 (ENSCPRG00005003584) #11	NT5C3B (ENSCPRG00005003578) #12	FKBP10 (ENSCPRG00005003571) #13	P3H4 (ENSCPRG00005003567) #14	JUP (ENSCPRG00005003553) #15	ENSCPRG00005003538	ENSCPRG00005003535	EIF1 (ENSCPRG00005003501) #17	ENSCPRG00005003496	KRT19 (ENSCPRG00005003494) #22	ENSCPRG00005003480 #18	ENSCPRG00005003472 #18	ENSCPRG00005003467 #24	ENSCPRG00005003464 #24	ENSCPRG00005003463	ENSCPRG00005003461	ENSCPRG00005003457	ENSCPRG00005003452	ENSCPRG00005003447 ##24	ENSCPRG00005003446 ##24	ENSCPRG00005003413 #25	ENSCPRG00005003305 #25	ENSCPRG00005003229 #25	KRT23 (ENSCPRG00005003211)	KRT20 (ENSCPRG00005003180)
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000155258.t #22	ENSGT00940000163247 #18	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00940000161855	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Chinese turtle	MODERN SPECIES	401			ENSPSIG00000002752 #12	FKBP10 (ENSPSIG00000002740) #13	P3H4 (ENSPSIG00000002702) #14	JUP (ENSPSIG00000002691) #15	ENSPSIG00000002686	EIF1 (ENSPSIG00000002672) #17	ENSPSIG00000002669	ENSPSIG00000002668 #18	ENSPSIG00000002643	ENSPSIG00000002638	KRT15 (ENSPSIG00000002628) ##24	KRT23 (ENSPSIG00000002604)	ENSPSIG00000002600	KRT19 (ENSPSIG00000002599) #22	ENSPSIG00000002598	ENSPSIG00000002065	ENSPSIG00000002596	ENSPSIG00000002595	KRT222 (ENSPSIG00000002590)	SMARCE1 (ENSPSIG00000002527)	CCR7 (ENSPSIG00000002515)	TNS4 (ENSPSIG00000002504)	IGFBP4 (ENSPSIG00000002490)	ENSPSIG00000002457	TOP2A (ENSPSIG00000002433)	ENSPSIG00000002064	RARA (ENSPSIG00000002372)	CDC6 (ENSPSIG00000002363)	RAPGEFL1 (ENSPSIG00000002352)
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000155258.t #22	ENSGT00940000163247.w #18	ENSGT00940000163247.v #18	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.d	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Emydidae	ANCESTRAL SPECIES	26	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000155258.t #22	ENSGT00940000163247.w #18	ENSGT00940000163247.v #18	ENSGT00950000182969.B.c.a.a.c.f.b	ENSGT00940000165820.A	ENSGT00940000154403.b ##24	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.d	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Three-toed box turtle	MODERN SPECIES	91	ENSTMTG00000005733	NKIRAS2 (ENSTMTG00000005744)	DNAJC7 (ENSTMTG00000005835)	CNP (ENSTMTG00000006824) #7	ODAD4 (ENSTMTG00000006839) #8	ACLY (ENSTMTG00000006881) #9	KLHL11 (ENSTMTG00000007004) #10	KLHL10 (ENSTMTG00000007021) #11	NT5C3B (ENSTMTG00000007037) #12	FKBP10 (ENSTMTG00000007058) #13	P3H4 (ENSTMTG00000007081) #14	JUP (ENSTMTG00000007105) #15	ENSTMTG00000007181	ENSTMTG00000007574	EIF1 (ENSTMTG00000007588) #17	ENSTMTG00000007603 #22	ENSTMTG00000007628 #18	ENSTMTG00000007662 #18	ENSTMTG00000007676	ENSTMTG00000007705 ##24	KRT15 (ENSTMTG00000007720) ##24	KRT23 (ENSTMTG00000007749)	ENSTMTG00000007803	KRT12 (ENSTMTG00000008143)	KRT24 (ENSTMTG00000008250)	KRT222 (ENSTMTG00000008270)	SMARCE1 (ENSTMTG00000008288)	CCR7 (ENSTMTG00000008302)	ENSTMTG00000008307	TNS4 (ENSTMTG00000008315)	IGFBP4 (ENSTMTG00000008352)
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000155258.t #22	ENSGT00940000163247 #18	ENSGT00950000182969.B.c.a.a.c.f.b.j	ENSGT00950000183311	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i	ENSGT00940000165820.A	ENSGT00940000154403.b ##24	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077	ENSGT00940000161855	ENSGT00940000159382	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a
tuatara	MODERN SPECIES	1950	ENSSPUG00000013120	ZNF385C (ENSSPUG00000013129)	NKIRAS2 (ENSSPUG00000013148)	DNAJC7 (ENSSPUG00000013180)	CNP (ENSSPUG00000013203) #7	ODAD4 (ENSSPUG00000013219) #8	ACLY (ENSSPUG00000013260) #9	KLHL11 (ENSSPUG00000013389) #10	KLHL10 (ENSSPUG00000013393) #11	NT5C3B (ENSSPUG00000013406) #12	FKBP10 (ENSSPUG00000013421) #13	P3H4 (ENSSPUG00000013436) #14	JUP (ENSSPUG00000013455) #15	ENSSPUG00000013483	EIF1 (ENSSPUG00000013490) #17	ENSSPUG00000013500 #22	ENSSPUG00000013511 #18	ENSSPUG00000013534 #20	ENSSPUG00000013544	ENSSPUG00000013576 ##24	KRT15 (ENSSPUG00000013597) ##24	ENSSPUG00000013612 #25	ENSSPUG00000013664 #25	KRT23 (ENSSPUG00000013704)	KRT20 (ENSSPUG00000013731)	KRT12 (ENSSPUG00000013794)	KRT10 (ENSSPUG00000013830)	ENSSPUG00000013886	ENSSPUG00000013896	KRT222 (ENSSPUG00000013908)	SMARCE1 (ENSSPUG00000013927)
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000154991.a.b	ENSGT00940000162770.p.a.b	ENSGT00940000154991.b	ENSGT00390000008726.h.b.f.b	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183	ENSGT00940000156395 #15	ENSGT00940000153814.b #14	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000155258.t #22	ENSGT00940000163247 #18	ENSGT00950000182969.B.c.a.a.c.f.b.j	ENSGT00950000183311	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b ##24	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000154991.a.b	ENSGT00940000162770.p.a.b	ENSGT00940000154991.b	ENSGT00390000008726.h.b.f.b	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183	ENSGT00940000156395 #15	ENSGT00940000153814.b #14	ENSGT01030000235196	ENSGT00390000015789.c #17	ENSGT00940000155258.t #22	ENSGT00940000163247 #18	ENSGT00950000182969.B.c.a.a.c.f.b.j	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b ##24	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000016211	ENSPMRG00000016215	ENSPMRG00000016224	ASIC2 (ENSPMRG00000016236)	ENSPMRG00000016266	ENSPMRG00000016276	PSMC5 (ENSPMRG00000016280)	SMARCD2 (ENSPMRG00000016290)	ENSPMRG00000016296	CRHR1 (ENSPMRG00000016303)	ENSPMRG00000016318	ENSPMRG00000016329	JUP (ENSPMRG00000016348) #15	P3H4 (ENSPMRG00000016362) #14	ENSPMRG00000016378	ENSPMRG00000016387 #22	EIF1 (ENSPMRG00000016400) #17	ENSPMRG00000016412 #18	ENSPMRG00000016440	ENSPMRG00000016447	ENSPMRG00000016458	ENSPMRG00000016468	ENSPMRG00000016471	ENSPMRG00000016479	KRT15 (ENSPMRG00000016495) ##24	ENSPMRG00000016555 #25	ENSPMRG00000016684 #25	KRT23 (ENSPMRG00000016687)	ENSPMRG00000016695	KRT12 (ENSPMRG00000016698)	ENSPMRG00000016700
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000155258.t #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000155258.t #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000155258.t #22
Blue-lipped sea krait	MODERN SPECIES	4298																ENSLLTG00000009807 #22	KRT12 (ENSLLTG00000006738)	ENSLLTG00000006763
Lizard	MODERN SPECIES	5	FTSJ3 (ENSACAG00000017930)	ENSACAG00000017921	SMARCD2 (ENSACAG00000017920)	ENSACAG00000017919	ENSACAG00000017912	ENSACAG00000044378	ENSACAG00000017907	ENSACAG00000017908	ENSACAG00000017899	ENSACAG00000037441	ENSACAG00000041527	ENSACAG00000017889 #15	P3H4 (ENSACAG00000017887) #14	ENSACAG00000035521	EIF1 (ENSACAG00000036849) #17	KRT19 (ENSACAG00000028562) #22	ENSACAG00000037211	ENSACAG00000026769	ENSACAG00000035898	ENSACAG00000035166	ENSACAG00000017876	ENSACAG00000017874	ENSACAG00000027366	ENSACAG00000029628	ENSACAG00000017868 ##24	KRT36 (ENSACAG00000015803) #25	KRT15 (ENSACAG00000028720) ##24	KRT23 (ENSACAG00000029308)	ENSACAG00000036063	KRT12 (ENSACAG00000017866)	ENSACAG00000043829
Amniota	DUPLICATION
Amniota	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Theria	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Primates	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.a ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135.h
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000157134	ENSGT00390000013639	ENSGT00960000187030	ENSGT00940000154406.b.h	ENSGT00940000155080	ENSGT00940000163729	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155258.s.a ##22	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.m	ENSGT00940000154353.A.n.b	ENSGT00940000154353.A.n.a	ENSGT00940000154353.B	ENSGT00940000162601	ENSGT00940000162097	ENSGT00940000164259	ENSGT01050000244827.E	ENSGT00970000198019	ENSGT00390000011297	ENSGT00950000183029.B.c.b.b.b	ENSGT00940000160370	ENSGT00940000155926
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000157134	ENSGT00390000013639	ENSGT00960000187030	ENSGT00940000154406.b.h	ENSGT00940000155080	ENSGT00940000163729	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155258.s.a ##22	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.m	ENSGT00940000154353.A.n.b	ENSGT00940000154353.A.n.a	ENSGT00940000154353.B	ENSGT00940000162601	ENSGT00940000162097	ENSGT00940000164259	ENSGT01050000244827.E	ENSGT00970000198019	ENSGT00390000011297	ENSGT00950000183029.B.c.b.b.b	ENSGT00940000160370	ENSGT00940000155926
Gibbon	MODERN SPECIES	18	EYS (ENSNLEG00000028360)	ENSNLEG00000031911	ENSNLEG00000035428	ENSNLEG00000034833	ENSNLEG00000034181	ADGRB3 (ENSNLEG00000000505)	LMBRD1 (ENSNLEG00000000524)	ENSNLEG00000034891	COL19A1 (ENSNLEG00000000613)	COL9A1 (ENSNLEG00000000726)	FAM135A (ENSNLEG00000000844)	SDHAF4 (ENSNLEG00000036240)	SMAP1 (ENSNLEG00000000922)	B3GAT2 (ENSNLEG00000000971)	OGFRL1 (ENSNLEG00000029017)	ENSNLEG00000031051 ##22	RIMS1 (ENSNLEG00000001000)	ENSNLEG00000033063	ENSNLEG00000028596	ENSNLEG00000031152	KCNQ5 (ENSNLEG00000001127)	ENSNLEG00000001177	KHDC1L (ENSNLEG00000001179)	ENSNLEG00000029407	ENSNLEG00000001183	DPPA5 (ENSNLEG00000001195)	KHDC3L (ENSNLEG00000001200)	OOEP (ENSNLEG00000001204)	DDX43 (ENSNLEG00000001209)	CGAS (ENSNLEG00000001281)	MTO1 (ENSNLEG00000001308)
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00390000009790	ENSGT00940000157134	ENSGT00390000013639	ENSGT00940000154406.b.h	ENSGT00940000155080	ENSGT00940000163729	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155258.s.a ##22	ENSGT00940000155134	ENSGT00900000143526	ENSGT00500000044955.j.a.b	ENSGT00940000155933.b.a	ENSGT00940000154353.A.m	ENSGT00940000154353.A.n.b	ENSGT00940000154353.A.n.a	ENSGT00940000154353.B	ENSGT00940000162601	ENSGT00940000162097	ENSGT00940000164259	ENSGT01050000244827.E	ENSGT00390000011297	ENSGT00950000183029.B.c.b.b.b	ENSGT00550000074801.h.c.a.a.b
Rhinopithecus	ANCESTRAL SPECIES	158								ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155258.s.a ##22	ENSGT00940000155134	ENSGT00500000044955.j.a.b	ENSGT00940000155933.b.a	ENSGT00940000154353.A.m	ENSGT00940000154353.A.n.b	ENSGT00940000154353.A.n.a	ENSGT00530000063880.b	ENSGT00390000011922	ENSGT00390000002661.b	ENSGT00940000154353.B.o	ENSGT00940000162601	ENSGT00940000162097	ENSGT00940000164259	ENSGT01050000244827.E	ENSGT00390000011297
Golden snub-nosed monkey	MODERN SPECIES	663					ADGRB3 (ENSRROG00000039346)	ENSRROG00000037012	ENSRROG00000026608	LMBRD1 (ENSRROG00000037176)	COL19A1 (ENSRROG00000040504)	COL9A1 (ENSRROG00000039731)	FAM135A (ENSRROG00000042516)	SDHAF4 (ENSRROG00000040092)	SMAP1 (ENSRROG00000044879)	B3GAT2 (ENSRROG00000019330)	OGFRL1 (ENSRROG00000032575)	ENSRROG00000040698 ##22	RIMS1 (ENSRROG00000043864)
Black snub-nosed monkey	MODERN SPECIES	370													SMAP1 (ENSRBIG00000027347)	B3GAT2 (ENSRBIG00000023924)	OGFRL1 (ENSRBIG00000037067)	ENSRBIG00000028660 ##22	RIMS1 (ENSRBIG00000034439)	ENSRBIG00000036792	KCNQ5 (ENSRBIG00000044288)	ENSRBIG00000043116	KHDC1L (ENSRBIG00000039358)	ENSRBIG00000017493	KHDC1 (ENSRBIG00000042990)	ENSRBIG00000022568	KHDC3L (ENSRBIG00000036722)	OOEP (ENSRBIG00000038750)	DDX43 (ENSRBIG00000043253)	CGAS (ENSRBIG00000034179)	MTO1 (ENSRBIG00000021154)	ENSRBIG00000028957	ENSRBIG00000038510
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00390000009790	ENSGT00940000157134	ENSGT00390000013639	ENSGT00940000154406.b.h	ENSGT00940000155080	ENSGT00940000163729	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155258.s.a ##22	ENSGT00940000155134	ENSGT00900000143526	ENSGT00500000044955.j.a.b	ENSGT00940000155933.b.a	ENSGT00940000154353.A.m	ENSGT00940000154353.A.n.b	ENSGT00940000154353.A.n.a	ENSGT00940000154353.B	ENSGT00940000162601	ENSGT00940000162097	ENSGT00940000164259	ENSGT01050000244827.E	ENSGT00390000011297	ENSGT00950000183029.B.c.b.b.b	ENSGT00550000074801.h.c.a.a.b
Cercopithecinae_a	DUPLICATION
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000157134	ENSGT01030000234543.A.b.eb	ENSGT00920000149123.n	ENSGT00390000013639	ENSGT00940000155080	ENSGT00940000163729	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155258.s.a.a ##22	ENSGT00940000155134	ENSGT00900000143526	ENSGT00500000044955.j.a.b	ENSGT00940000155933.b.a	ENSGT00940000154353.A.m	ENSGT00940000154353.A.n.b	ENSGT00940000154353.A.n.a	ENSGT00940000154353.B	ENSGT00940000162601	ENSGT00940000162097	ENSGT00940000164259	ENSGT01050000244827.E	ENSGT00390000011297	ENSGT00950000183029.B.c.b.b.b.v	ENSGT00940000160370
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00940000157134	ENSGT00920000149123.n	ENSGT00390000013639	ENSGT00940000155080	ENSGT00940000163729	ENSGT00940000156554.d	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155258.s.a.a ##22	ENSGT00940000155134	ENSGT00900000143526	ENSGT00500000044955.j.a.b	ENSGT00940000155933.b.a	ENSGT00940000154353.A.m	ENSGT00940000154353.A.n.b	ENSGT00940000154353.A.n.a	ENSGT00940000154353.B	ENSGT00940000162601.k	ENSGT00940000162097	ENSGT00940000164259	ENSGT01050000244827.E	ENSGT00390000011297	ENSGT00550000074801.h.c.a.a.b	ENSGT00940000160370
Olive baboon	MODERN SPECIES	16	ENSPANG00000041988	ENSPANG00000048677	LMBRD1 (ENSPANG00000023065)	COL19A1 (ENSPANG00000015947)	COL9A1 (ENSPANG00000021650)	ENSPANG00000029634	FAM135A (ENSPANG00000000816)	SDHAF4 (ENSPANG00000024246)	ENSPANG00000047991	ENSPANG00000040282	SMAP1 (ENSPANG00000009986)	B3GAT2 (ENSPANG00000021732)	ENSPANG00000047564	OGFRL1 (ENSPANG00000019582)	ENSPANG00000047414	ENSPANG00000010457 ##22	RIMS1 (ENSPANG00000024245)	KCNQ5 (ENSPANG00000019581)	ENSPANG00000015806	KHDC1L (ENSPANG00000024450)	ENSPANG00000039650	ENSPANG00000048234	ENSPANG00000020317	ENSPANG00000029964	OOEP (ENSPANG00000010455)	ENSPANG00000041637	CD109 (ENSPANG00000025498)	SLC17A5 (ENSPANG00000040614)	ENSPANG00000021501	ENSPANG00000006932	MTO1 (ENSPANG00000024449)
Cercopithecinae_d	ANCESTRAL SPECIES	157						ENSGT00940000156554.d	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155258.s.a.a ##22	ENSGT00940000155134	ENSGT00900000143526	ENSGT00500000044955.j.a.b	ENSGT00940000155933.b.a	ENSGT00940000154353.A.m	ENSGT00940000154353.A.n.b	ENSGT00940000154353.A.n.a	ENSGT00940000154353.B	ENSGT00940000162601.k	ENSGT00940000162097	ENSGT00940000164259	ENSGT01050000244827.E	ENSGT00390000011297	ENSGT00550000074801.h.c.a.a.b	ENSGT00940000160370
Sooty mangabey	MODERN SPECIES	143				ENSCATG00000040628	ENSCATG00000041919	ENSCATG00000043415	ENSCATG00000033482	LMBRD1 (ENSCATG00000036208)	COL19A1 (ENSCATG00000042450)	COL9A1 (ENSCATG00000028556)	FAM135A (ENSCATG00000032192)	SDHAF4 (ENSCATG00000032791)	SMAP1 (ENSCATG00000002544)	B3GAT2 (ENSCATG00000041104)	OGFRL1 (ENSCATG00000044369)	ENSCATG00000044513 ##22	RIMS1 (ENSCATG00000015586)	ENSCATG00000023513	KCNQ5 (ENSCATG00000024600)	ENSCATG00000003513	ENSCATG00000009252	ENSCATG00000008489	KHDC1L (ENSCATG00000030639)	KHDC1 (ENSCATG00000033213)	ENSCATG00000029105	DPPA5 (ENSCATG00000032143)	KHDC3L (ENSCATG00000033310)	OOEP (ENSCATG00000040076)	DDX43 (ENSCATG00000031875)	CGAS (ENSCATG00000007134)	MTO1 (ENSCATG00000030762)
Drill	MODERN SPECIES	943															OGFRL1 (ENSMLEG00000003186)	ENSMLEG00000041284 ##22	ENSMLEG00000021125	RIMS1 (ENSMLEG00000040237)	KCNQ5 (ENSMLEG00000035213)	ENSMLEG00000041839	ENSMLEG00000041383	ENSMLEG00000044269	KHDC1L (ENSMLEG00000037695)	KHDC1 (ENSMLEG00000036769)	ENSMLEG00000033221	KHDC3L (ENSMLEG00000003534)	OOEP (ENSMLEG00000026859)	DDX43 (ENSMLEG00000041961)	CGAS (ENSMLEG00000040659)	MTO1 (ENSMLEG00000044170)	ENSMLEG00000038578
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000157134	ENSGT01030000234543.A.b.eb	ENSGT00920000149123.n	ENSGT00390000013639	ENSGT00940000155080	ENSGT00940000163729	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155258.s.a.a ##22	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.m	ENSGT00940000154353.A.n.b	ENSGT00940000154353.A.n.a	ENSGT00940000154353.B	ENSGT00940000162601	ENSGT00940000162097	ENSGT00940000164259	ENSGT01050000244827.E	ENSGT00390000011297	ENSGT00950000183029.B.c.b.b.b.v	ENSGT00940000160370	ENSGT00940000155926	ENSGT00940000154923.C
Pig-tailed macaque	MODERN SPECIES	558	ENSMNEG00000030116	PTP4A1 (ENSMNEG00000031726)	PHF3 (ENSMNEG00000039213)	EYS (ENSMNEG00000030719)	ENSMNEG00000006166	ENSMNEG00000015246	ADGRB3 (ENSMNEG00000033979)	LMBRD1 (ENSMNEG00000044526)	COL19A1 (ENSMNEG00000043640)	COL9A1 (ENSMNEG00000030689)	FAM135A (ENSMNEG00000034243)	SDHAF4 (ENSMNEG00000030604)	SMAP1 (ENSMNEG00000033567)	B3GAT2 (ENSMNEG00000045320)	OGFRL1 (ENSMNEG00000029789)	ENSMNEG00000035315 ##22	RIMS1 (ENSMNEG00000031889)	ENSMNEG00000042932	ENSMNEG00000031799	KCNQ5 (ENSMNEG00000040005)	ENSMNEG00000042746	ENSMNEG00000035766	KHDC1 (ENSMNEG00000035131)	DPPA5 (ENSMNEG00000034230)	KHDC3L (ENSMNEG00000038910)	OOEP (ENSMNEG00000032704)	DDX43 (ENSMNEG00000038522)	CGAS (ENSMNEG00000044904)	MTO1 (ENSMNEG00000038616)	ENSMNEG00000035651	ENSMNEG00000040657
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a.b ##22
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.a ##22	ENSGT00940000155258.s.a.b ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Pig-tailed macaque	MODERN SPECIES	494	CNP (ENSMNEG00000035343) #7	ODAD4 (ENSMNEG00000039183) #8	ACLY (ENSMNEG00000035847) #9	KLHL11 (ENSMNEG00000031885) #10	KLHL10 (ENSMNEG00000042555) #11	NT5C3B (ENSMNEG00000035716) #12	FKBP10 (ENSMNEG00000033649) #13	P3H4 (ENSMNEG00000041698) #14	JUP (ENSMNEG00000036253) #15	HAP1 (ENSMNEG00000035755)	GAST (ENSMNEG00000041907) #16	EIF1 (ENSMNEG00000003695) #17	KRT14 (ENSMNEG00000043951) #19	KRT16 (ENSMNEG00000033870) #20	KRT9 (ENSMNEG00000040688) #21	ENSMNEG00000033600 ##22	KRT15 (ENSMNEG00000029627) #23	ENSMNEG00000032411 #24	KRT36 (ENSMNEG00000044545) #25	KRT35 (ENSMNEG00000039878) #26	KRT32 (ENSMNEG00000045031) #27	KRT38 (ENSMNEG00000000012)	KRT37 (ENSMNEG00000035120)	ENSMNEG00000038095 #28	ENSMNEG00000037062 #32	KRT34 (ENSMNEG00000042394)	KRT33B (ENSMNEG00000030395)	KRT33A (ENSMNEG00000044378) #32	ENSMNEG00000040794	ENSMNEG00000032560	ENSMNEG00000028160
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a.c ##22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a.c ##22
Cebidae_a	ANCESTRAL SPECIES	3	ENSGT00390000015996	ENSGT00950000182924.B.a.b	ENSGT00940000160154	ENSGT00940000158570	ENSGT00940000157177	ENSGT00940000156580	ENSGT00940000161317	ENSGT00550000074618.a.a.i	ENSGT00390000012652.bb	ENSGT00940000159831	ENSGT00950000182869.e.a.b.sb.a	ENSGT00440000037499	ENSGT00940000158076	ENSGT00940000156067	ENSGT00940000153446.a.a.q.a.a.a.b	ENSGT00940000155258.s.a.c ##22	ENSGT00730000111200	ENSGT00950000182974.a.a.b	ENSGT00910000147122	ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000160656	ENSGT00940000156068	ENSGT00940000162679	ENSGT00940000156386	ENSGT00390000013108	ENSGT00390000003225	ENSGT00390000018781	ENSGT00390000016991	ENSGT00940000156288
Capuchin	MODERN SPECIES	76	SEC24A (ENSCCAG00000032334)	SAR1B (ENSCCAG00000037282)	ENSCCAG00000026527	JADE2 (ENSCCAG00000027715)	CDKN2AIPNL (ENSCCAG00000021921)	UBE2B (ENSCCAG00000026429)	CDKL3 (ENSCCAG00000024762)	ENSCCAG00000025572	ENSCCAG00000031876	TCF7 (ENSCCAG00000026300)	VDAC1 (ENSCCAG00000028384)	C5orf15 (ENSCCAG00000024033)	FSTL4 (ENSCCAG00000027531)	HSPA4 (ENSCCAG00000036316)	ENSCCAG00000031545	ENSCCAG00000015918 ##22	ZCCHC10 (ENSCCAG00000024643)	ENSCCAG00000005532	AFF4 (ENSCCAG00000030353)	ENSCCAG00000034775	LEAP2 (ENSCCAG00000029916)	UQCRQ (ENSCCAG00000034496)	ENSCCAG00000031721	SHROOM1 (ENSCCAG00000037692)	SEPTIN8 (ENSCCAG00000028922)	CCNI2 (ENSCCAG00000037558)	KIF3A (ENSCCAG00000035624)	IL4 (ENSCCAG00000023394)	IL13 (ENSCCAG00000033417)	RAD50 (ENSCCAG00000037418)	IL5 (ENSCCAG00000036340)
Bolivian squirrel monkey	MODERN SPECIES	43	SEC24A (ENSSBOG00000024973)	SAR1B (ENSSBOG00000022930)	JADE2 (ENSSBOG00000035045)	ENSSBOG00000028786	CDKN2AIPNL (ENSSBOG00000011200)	UBE2B (ENSSBOG00000024350)	CDKL3 (ENSSBOG00000020404)	ENSSBOG00000023243	ENSSBOG00000027260	ENSSBOG00000029368	TCF7 (ENSSBOG00000023988)	VDAC1 (ENSSBOG00000025732)	C5orf15 (ENSSBOG00000008071)	FSTL4 (ENSSBOG00000023542)	HSPA4 (ENSSBOG00000030378)	ENSSBOG00000023294 ##22	ENSSBOG00000035356	AFF4 (ENSSBOG00000021562)	LEAP2 (ENSSBOG00000036208)	UQCRQ (ENSSBOG00000030933)	GDF9 (ENSSBOG00000021602)	SHROOM1 (ENSSBOG00000014463)	SEPTIN8 (ENSSBOG00000021236)	CCNI2 (ENSSBOG00000024313)	KIF3A (ENSSBOG00000025487)	IL4 (ENSSBOG00000018689)	IL13 (ENSSBOG00000025273)	RAD50 (ENSSBOG00000034930)	IL5 (ENSSBOG00000026418)	IRF1 (ENSSBOG00000029502)	ENSSBOG00000029687
Marmoset	MODERN SPECIES		ENSCJAG00000070779	PBX3 (ENSCJAG00000007020)	MAPKAP1 (ENSCJAG00000006963)	GAPVD1 (ENSCJAG00000006913)	HSPA5 (ENSCJAG00000006880)	ENSCJAG00000052894	RABEPK (ENSCJAG00000006849)	PPP6C (ENSCJAG00000006827)	ENSCJAG00000082314	ENSCJAG00000077976	SCAI (ENSCJAG00000006789)	GOLGA1 (ENSCJAG00000006745)	ENSCJAG00000006730	ENSCJAG00000006724	WDR38 (ENSCJAG00000006695)	ENSCJAG00000077082 ##22	OLFML2A (ENSCJAG00000006668)	ENSCJAG00000078726	NR6A1 (ENSCJAG00000006631)	NR5A1 (ENSCJAG00000006624)	ADGRD2 (ENSCJAG00000040439)	PSMB7 (ENSCJAG00000006541)	NEK6 (ENSCJAG00000006507)	LHX2 (ENSCJAG00000006496)	ENSCJAG00000085719	DENND1A (ENSCJAG00000006461)	CRB2 (ENSCJAG00000006432)	STRBP (ENSCJAG00000019997)	RABGAP1 (ENSCJAG00000020027)	ZBTB26 (ENSCJAG00000021770)	ZBTB6 (ENSCJAG00000020049)
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.a.d ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.b	ENSGT00940000163444.a	ENSGT00940000163841.d	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00940000153980.j.c #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Mas night monkey	DUPLICATION
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	760														ENSANAG00000029038	ENSANAG00000028169	ENSANAG00000035571 ##22	ENSANAG00000019045	ENSANAG00000033721	USP18 (ENSANAG00000038004)	TUBA8 (ENSANAG00000020993)	PEX26 (ENSANAG00000033468)	ENSANAG00000024037	MICAL3 (ENSANAG00000021919)	BID (ENSANAG00000035339)	BCL2L13 (ENSANAG00000017578)	ENSANAG00000037241	SLC25A18 (ENSANAG00000036909)	ENSANAG00000021362	CECR2 (ENSANAG00000035159)	ENSANAG00000038012	ENSANAG00000027660
Mas night monkey	MODERN SPECIES	263	ADIPOQ (ENSANAG00000027650)	RFC4 (ENSANAG00000034236)	ENSANAG00000027718	ENSANAG00000021851	ENSANAG00000001314	KNG1 (ENSANAG00000025727)	ENSANAG00000031599	HRG (ENSANAG00000027817)	FETUB (ENSANAG00000025218)	AHSG (ENSANAG00000036042)	DNAJB11 (ENSANAG00000036907)	TBCCD1 (ENSANAG00000029121)	CRYGS (ENSANAG00000029795)	DGKG (ENSANAG00000037810)	ETV5 (ENSANAG00000024509)	ENSANAG00000016980 ##22	ENSANAG00000023638	TRA2B (ENSANAG00000022734)
Mas night monkey	MODERN SPECIES	734	ENSANAG00000022815	ACLY (ENSANAG00000036009) #9	KLHL11 (ENSANAG00000025835) #10	KLHL10 (ENSANAG00000034180) #11	NT5C3B (ENSANAG00000034532) #12	FKBP10 (ENSANAG00000032568) #13	P3H4 (ENSANAG00000032174) #14	ENSANAG00000022756 #15	GAST (ENSANAG00000026679) #16	ENSANAG00000024134	ENSANAG00000030349 ##17	ENSANAG00000022401	KRT16 (ENSANAG00000000025) #20	KRT14 (ENSANAG00000021827) #19	KRT9 (ENSANAG00000036881) #21	ENSANAG00000034168 ##22	KRT15 (ENSANAG00000028893) #23	KRT13 (ENSANAG00000020916)	KRT36 (ENSANAG00000033818) #25	KRT35 (ENSANAG00000021510) #26	KRT32 (ENSANAG00000035400) #27	ENSANAG00000020600	ENSANAG00000030838	KRT31 (ENSANAG00000031009)	KRT34 (ENSANAG00000037613)	KRT33B (ENSANAG00000030104)	KRT33A (ENSANAG00000027584) #32	ENSANAG00000030925
Cebidae	ANCESTRAL SPECIES	10	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.a.d ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459	ENSGT00940000156135.h.b.a	ENSGT00940000164350.B	ENSGT00940000163975.c	ENSGT00940000156135.h.b.b	ENSGT00940000165435
Cebidae_a	ANCESTRAL SPECIES	69	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.a.d ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.b	ENSGT00940000163444.a	ENSGT00940000153980.j.c #32	ENSGT00950000183407 #33	ENSGT00940000156135.h.b.b	ENSGT00940000156135.g.a.b.b	ENSGT00940000163416 #37
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	415	CNP (ENSCCAG00000017532) #7	ODAD4 (ENSCCAG00000020868) #8	ACLY (ENSCCAG00000033582) #9	KLHL11 (ENSCCAG00000024663) #10	KLHL10 (ENSCCAG00000022400) #11	NT5C3B (ENSCCAG00000035675) #12	FKBP10 (ENSCCAG00000030890) #13	P3H4 (ENSCCAG00000036705) #14	JUP (ENSCCAG00000036633) #15	GAST (ENSCCAG00000024810) #16	EIF1 (ENSCCAG00000031875) #17	KRT17 (ENSCCAG00000031405)	KRT16 (ENSCCAG00000036404) #20	KRT14 (ENSCCAG00000034073) #19	KRT9 (ENSCCAG00000029116) #21	ENSCCAG00000030249 ##22	KRT15 (ENSCCAG00000025038) #23	ENSCCAG00000020701 #24	KRT36 (ENSCCAG00000035265) #25	KRT35 (ENSCCAG00000035353) #26	KRT32 (ENSCCAG00000021372) #27	ENSCCAG00000024865	ENSCCAG00000030962	KRT34 (ENSCCAG00000030284)	ENSCCAG00000021630
Capuchin	MODERN SPECIES	524										ENSCCAG00000016107	ENSCCAG00000024216	ENSCCAG00000024504	ENSCCAG00000033039	ENSCCAG00000026328	ENSCCAG00000030744	ENSCCAG00000001711 ##22	ENSCCAG00000030237	ENSCCAG00000001167	ZNF22 (ENSCCAG00000032168)	RASSF4 (ENSCCAG00000033639)	TMEM72 (ENSCCAG00000022676)	ENSCCAG00000025568	ENSCCAG00000013880	CXCL12 (ENSCCAG00000021174)	ENSCCAG00000037068	ENSCCAG00000033603	ENSCCAG00000004374
Marmoset	MODERN SPECIES	17	ODAD4 (ENSCJAG00000036444) #8	ACLY (ENSCJAG00000014988) #9	KLHL11 (ENSCJAG00000015068) #10	ENSCJAG00000075103 #11	ENSCJAG00000080903	NT5C3B (ENSCJAG00000012205) #12	ENSCJAG00000066555	FKBP10 (ENSCJAG00000012179) #13	P3H4 (ENSCJAG00000012157) #14	JUP (ENSCJAG00000012139) #15	GAST (ENSCJAG00000012135) #16	ENSCJAG00000045145 #17	KRT14 (ENSCJAG00000037508) #19	KRT16 (ENSCJAG00000047935) #20	KRT9 (ENSCJAG00000048395) #21	ENSCJAG00000029756 ##22	ENSCJAG00000002399 #24	KRT36 (ENSCJAG00000042265) #25	KRT32 (ENSCJAG00000037849) #27	ENSCJAG00000060821 #28	KRTAP17-1 (ENSCJAG00000038264) #33	KRTAP16-1 (ENSCJAG00000038552) #34	KRTAP29-1 (ENSCJAG00000022475)	ENSCJAG00000002348	ENSCJAG00000043000	ENSCJAG00000010933	ENSCJAG00000013730	KRTAP4-3 (ENSCJAG00000071301)	ENSCJAG00000067750	KRTAP4-12 (ENSCJAG00000069967)	ENSCJAG00000082655
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Chiroptera	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Microchiroptera	ANCESTRAL SPECIES																	ENSGT00940000155258.s.a ##22
Microbat	MODERN SPECIES	1027	CD40 (ENSMLUG00000006007)	ENSMLUG00000028559	CDH22 (ENSMLUG00000006013)	SLC35C2 (ENSMLUG00000008764)	ELMO2 (ENSMLUG00000008785)	OCSTAMP (ENSMLUG00000025785)	SLC13A3 (ENSMLUG00000015668)	TP53RK (ENSMLUG00000012340)	SLC2A10 (ENSMLUG00000015677)	EYA2 (ENSMLUG00000014171)	ZMYND8 (ENSMLUG00000005974)	NCOA3 (ENSMLUG00000000418)	SULF2 (ENSMLUG00000000429)	PREX1 (ENSMLUG00000016835)	ARFGEF2 (ENSMLUG00000006936)	ENSMLUG00000028217 ##22	RAB43 (ENSMLUG00000025153)	ISY1 (ENSMLUG00000011804)	ENSMLUG00000025147	CNBP (ENSMLUG00000012554)	COPG1 (ENSMLUG00000012542)	HMCES (ENSMLUG00000010630)	RAB7A (ENSMLUG00000008454)	RPN1 (ENSMLUG00000017213)	GATA2 (ENSMLUG00000005506)	DNAJB8 (ENSMLUG00000001820)	EEFSEC (ENSMLUG00000004261)	RUVBL1 (ENSMLUG00000004254)	SEC61A1 (ENSMLUG00000004248)	KBTBD12 (ENSMLUG00000001141)	MGLL (ENSMLUG00000017152)
Amniota	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Theria	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Primates	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.B	ENSGT00940000154602.b.a #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b ##22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000163841.d	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Hominidae	ANCESTRAL SPECIES	16	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.B	ENSGT00940000154602.b.a #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b ##22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000163841.d	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.B	ENSGT00940000154602.b.a #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b ##22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000163841.d	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Gorilla	MODERN SPECIES	18	ODAD4 (ENSGGOG00000003581) #8	ACLY (ENSGGOG00000003570) #9	KLHL11 (ENSGGOG00000003568) #10	KLHL10 (ENSGGOG00000010132) #11	NT5C3B (ENSGGOG00000010128) #12	FKBP10 (ENSGGOG00000010119) #13	P3H4 (ENSGGOG00000010113) #14	JUP (ENSGGOG00000010104) #15	ENSGGOG00000012786	GAST (ENSGGOG00000016628) #16	EIF1 (ENSGGOG00000027201) #17	KRT17 (ENSGGOG00000037892)	KRT16 (ENSGGOG00000012807) #20	KRT14 (ENSGGOG00000005328) #19	ENSGGOG00000005324 #21	KRT19 (ENSGGOG00000016901) ##22	KRT15 (ENSGGOG00000040448) #23	KRT13 (ENSGGOG00000016882)	KRT36 (ENSGGOG00000016873) #25	KRT35 (ENSGGOG00000016868) #26	KRT32 (ENSGGOG00000016863) #27	KRT38 (ENSGGOG00000016860)	ENSGGOG00000008460 #28	KRT31 (ENSGGOG00000036536)	KRT34 (ENSGGOG00000043312)	KRT33B (ENSGGOG00000016851)	KRTAP17-1 (ENSGGOG00000002618) #33	KRTAP16-1 (ENSGGOG00000041717) #34	KRTAP29-1 (ENSGGOG00000023439)	KRTAP9-7 (ENSGGOG00000038152)	ENSGGOG00000036550
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.B	ENSGT00940000154602.b.a #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b ##22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000163841.d	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Pan	ANCESTRAL SPECIES	3	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.B	ENSGT00940000154602.b.a #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b ##22	ENSGT00940000154403.a.a #23	ENSGT00950000183311	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000163841.d	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Chimpanzee	MODERN SPECIES	8	ACLY (ENSPTRG00000023148) #9	KLHL11 (ENSPTRG00000009183) #10	KLHL10 (ENSPTRG00000009182) #11	NT5C3B (ENSPTRG00000009181) #12	FKBP10 (ENSPTRG00000009180) #13	P3H4 (ENSPTRG00000009179) #14	JUP (ENSPTRG00000009178) #15	HAP1 (ENSPTRG00000009177)	GAST (ENSPTRG00000009176) #16	EIF1 (ENSPTRG00000009175) #17	ENSPTRG00000047091	KRT17 (ENSPTRG00000009173)	KRT16 (ENSPTRG00000009171) #20	KRT14 (ENSPTRG00000009172) #19	KRT9 (ENSPTRG00000009169) #21	KRT19 (ENSPTRG00000009168) ##22	KRT15 (ENSPTRG00000009167) #23	KRT13 (ENSPTRG00000009166)	KRT36 (ENSPTRG00000009165) #25	KRT35 (ENSPTRG00000023885) #26	KRT32 (ENSPTRG00000009164) #27	KRT38 (ENSPTRG00000009163)	KRT37 (ENSPTRG00000009162)	KRT41 (ENSPTRG00000032515) #28	KRT31 (ENSPTRG00000009161)	KRT34 (ENSPTRG00000045350)	KRT33B (ENSPTRG00000009159)	KRT33A (ENSPTRG00000009158) #32	KRTAP17-1 (ENSPTRG00000049951) #33	KRTAP16-1 (ENSPTRG00000043443) #34	KRTAP29-1 (ENSPTRG00000042068)
Bonobo	MODERN SPECIES	8	CNP (ENSPPAG00000041028) #7	ODAD4 (ENSPPAG00000034013) #8	ACLY (ENSPPAG00000027072) #9	KLHL11 (ENSPPAG00000030884) #10	KLHL10 (ENSPPAG00000031496) #11	NT5C3B (ENSPPAG00000036201) #12	FKBP10 (ENSPPAG00000028890) #13	JUP (ENSPPAG00000040955) #15	HAP1 (ENSPPAG00000028111)	GAST (ENSPPAG00000030298) #16	EIF1 (ENSPPAG00000035240) #17	KRT17 (ENSPPAG00000038385)	KRT16 (ENSPPAG00000037025) #20	KRT14 (ENSPPAG00000043292) #19	KRT9 (ENSPPAG00000034094) #21	KRT19 (ENSPPAG00000031096) ##22	KRT15 (ENSPPAG00000041916) #23	KRT13 (ENSPPAG00000010206)	KRT36 (ENSPPAG00000038948) #25	KRT35 (ENSPPAG00000032332) #26	KRT32 (ENSPPAG00000014018) #27	KRT38 (ENSPPAG00000031330)	KRT37 (ENSPPAG00000000108)	ENSPPAG00000039499 #28	KRT31 (ENSPPAG00000043231)	KRT34 (ENSPPAG00000027792)	KRT33B (ENSPPAG00000027849)	KRT33A (ENSPPAG00000036749) #32	ENSPPAG00000040600	KRTAP17-1 (ENSPPAG00000005658) #33	KRTAP16-1 (ENSPPAG00000023987) #34
Human	MODERN SPECIES	8	ODAD4 (ENSG00000204815) #8	ACLY (ENSG00000131473) #9	KLHL11 (ENSG00000178502) #10	KLHL10 (ENSG00000161594) #11	NT5C3B (ENSG00000141698) #12	FKBP10 (ENSG00000141756) #13	P3H4 (ENSG00000141696) #14	JUP (ENSG00000173801) #15	HAP1 (ENSG00000173805)	GAST (ENSG00000184502) #16	EIF1 (ENSG00000173812) #17	KRT17 (ENSG00000128422)	KRT16 (ENSG00000186832) #20	KRT14 (ENSG00000186847) #19	KRT9 (ENSG00000171403) #21	KRT19 (ENSG00000171345) ##22	KRT15 (ENSG00000171346) #23	KRT13 (ENSG00000171401)	KRT36 (ENSG00000126337) #25	KRT35 (ENSG00000197079) #26	KRT32 (ENSG00000108759) #27	KRT38 (ENSG00000171360)	KRT37 (ENSG00000108417)	KRT31 (ENSG00000094796)	KRT34 (ENSG00000131737)	KRT33B (ENSG00000131738)	KRT33A (ENSG00000006059) #32	KRTAP17-1 (ENSG00000186860) #33	KRTAP16-1 (ENSG00000212657) #34	KRTAP29-1 (ENSG00000212658)	KRTAP9-7 (ENSG00000180386)
Orangutan	MODERN SPECIES	8	ODAD4 (ENSPPYG00000008404) #8	ACLY (ENSPPYG00000029534) #9	KLHL11 (ENSPPYG00000008405) #10	KLHL10 (ENSPPYG00000008406) #11	NT5C3B (ENSPPYG00000008407) #12	FKBP10 (ENSPPYG00000008408) #13	P3H4 (ENSPPYG00000008409) #14	JUP (ENSPPYG00000008410) #15	HAP1 (ENSPPYG00000008411)	ENSPPYG00000008412 #16	EIF1 (ENSPPYG00000034100) #17	KRT17 (ENSPPYG00000029883)	KRT16 (ENSPPYG00000008415) #20	KRT14 (ENSPPYG00000034823) #19	KRT9 (ENSPPYG00000008965) #21	KRT19 (ENSPPYG00000008416) ##22	KRT15 (ENSPPYG00000008417) #23	KRT13 (ENSPPYG00000008969)	KRT36 (ENSPPYG00000008418) #25	KRT35 (ENSPPYG00000008419) #26	KRT32 (ENSPPYG00000008420) #27	KRT38 (ENSPPYG00000008421)	KRT37 (ENSPPYG00000008423)	ENSPPYG00000035579 #28	KRT31 (ENSPPYG00000008425)	KRT34 (ENSPPYG00000037963)	KRT33B (ENSPPYG00000040710)	KRT33A (ENSPPYG00000033957) #32	KRTAP9-6 (ENSPPYG00000008430)	ENSPPYG00000031008	ENSPPYG00000030825
Gibbon	MODERN SPECIES	106	ACLY (ENSNLEG00000011182) #9	KLHL11 (ENSNLEG00000011177) #10	KLHL10 (ENSNLEG00000011166) #11	NT5C3B (ENSNLEG00000011106) #12	FKBP10 (ENSNLEG00000011092) #13	P3H4 (ENSNLEG00000011079) #14	JUP (ENSNLEG00000011062) #15	HAP1 (ENSNLEG00000011052)	GAST (ENSNLEG00000011040) #16	EIF1 (ENSNLEG00000011013) #17	KRT17 (ENSNLEG00000010943)	KRT16 (ENSNLEG00000010909) #20	ENSNLEG00000010904 #20	KRT14 (ENSNLEG00000010819) #19	ENSNLEG00000010814 #21	KRT19 (ENSNLEG00000010787) ##22	KRT15 (ENSNLEG00000010758) #23	ENSNLEG00000010740 #24	KRT36 (ENSNLEG00000010723) #25	KRT35 (ENSNLEG00000010711) #26	KRT32 (ENSNLEG00000010704) #27	KRT38 (ENSNLEG00000010683)	KRT37 (ENSNLEG00000010672)	ENSNLEG00000029352 #28	KRT31 (ENSNLEG00000010618)	KRT34 (ENSNLEG00000010638)	KRT33B (ENSNLEG00000029081)	KRT33A (ENSNLEG00000010601) #32	KRTAP9-7 (ENSNLEG00000010581)	ENSNLEG00000029899	ENSNLEG00000018665
Cercopithecidae	DUPLICATION
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.a ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.a ##22	ENSGT00940000155258.s.b.a.b ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34
Vervet Monkey	MODERN SPECIES	7	CNP (ENSCSAG00000003059) #7	ODAD4 (ENSCSAG00000003055) #8	ACLY (ENSCSAG00000003049) #9	KLHL11 (ENSCSAG00000003041) #10	KLHL10 (ENSCSAG00000003036) #11	NT5C3B (ENSCSAG00000003031) #12	FKBP10 (ENSCSAG00000003026) #13	P3H4 (ENSCSAG00000003021) #14	JUP (ENSCSAG00000003017) #15	GAST (ENSCSAG00000003011) #16	ENSCSAG00000003007 ##17	ENSCSAG00000003005	KRT16 (ENSCSAG00000003001) #20	KRT14 (ENSCSAG00000003000) #19	KRT9 (ENSCSAG00000002997) #21	KRT19 (ENSCSAG00000002992) ##22	KRT15 (ENSCSAG00000002987) #23	ENSCSAG00000002983 #24	KRT36 (ENSCSAG00000002979) #25	KRT35 (ENSCSAG00000002967) #26	KRT32 (ENSCSAG00000002953) #27	KRT38 (ENSCSAG00000002941)	KRT37 (ENSCSAG00000002934)	ENSCSAG00000002929 #32	KRT34 (ENSCSAG00000002912)	KRT33B (ENSCSAG00000002902)	KRT33A (ENSCSAG00000002894) #32	ENSCSAG00000019026	KRTAP16-1 (ENSCSAG00000019027) #34	KRTAP29-1 (ENSCSAG00000019028)	ENSCSAG00000002879
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.a ##22	ENSGT00940000155258.s.b.a.b ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b.a.a ##22
Olive baboon	MODERN SPECIES	8	ODAD4 (ENSPANG00000021478) #8	ACLY (ENSPANG00000021526) #9	KLHL11 (ENSPANG00000021524) #10	KLHL10 (ENSPANG00000021523) #11	NT5C3B (ENSPANG00000021521) #12	FKBP10 (ENSPANG00000021520) #13	P3H4 (ENSPANG00000021519) #14	JUP (ENSPANG00000021517) #15	GAST (ENSPANG00000021514) #16	EIF1 (ENSPANG00000021513) #17	ENSPANG00000021533	KRT16 (ENSPANG00000021539) #20	KRT14 (ENSPANG00000021537) #19	KRT9 (ENSPANG00000041676) #21	ENSPANG00000037164	ENSPANG00000032314 ##22	ENSPANG00000021550 #24	KRT35 (ENSPANG00000021556) #26	KRT32 (ENSPANG00000021554) #27	ENSPANG00000021551 #28	KRT34 (ENSPANG00000021557)	KRT33B (ENSPANG00000039315)	KRT33A (ENSPANG00000021574) #32	KRTAP17-1 (ENSPANG00000049081) #33	KRTAP29-1 (ENSPANG00000041057)	ENSPANG00000049500	ENSPANG00000030200	ENSPANG00000033743	ENSPANG00000032465	ENSPANG00000021570	ENSPANG00000048794
Macaca	ANCESTRAL SPECIES	4	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.a ##22	ENSGT00940000155258.s.a.b ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00940000154602.b #20	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.a ##22	ENSGT00940000154403.a.b #24	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.b.a.a.a.a.b.d	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000163841.d	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Rhesus	MODERN SPECIES	7	DNAJC7 (ENSMMUG00000016118)	CNP (ENSMMUG00000016114) #7	ODAD4 (ENSMMUG00000021753) #8	ENSMMUG00000050062	ACLY (ENSMMUG00000018931) #9	KLHL11 (ENSMMUG00000005962) #10	KLHL10 (ENSMMUG00000005961) #11	NT5C3B (ENSMMUG00000013056) #12	FKBP10 (ENSMMUG00000013054) #13	P3H4 (ENSMMUG00000013051) #14	ENSMMUG00000050097	JUP (ENSMMUG00000013048) #15	GAST (ENSMMUG00000063004) #16	ENSMMUG00000049151 ##17	KRT9 (ENSMMUG00000008543) #21	KRT19 (ENSMMUG00000018653) ##22	KRT16 (ENSMMUG00000009895) #20	ENSMMUG00000040413 #24	ENSMMUG00000059862	KRT36 (ENSMMUG00000018646) #25	KRT35 (ENSMMUG00000018645) #26	KRT32 (ENSMMUG00000018644) #27	KRT38 (ENSMMUG00000049208)	KRT37 (ENSMMUG00000018643)	KRT31 (ENSMMUG00000064317)	KRT34 (ENSMMUG00000010754)	KRT33B (ENSMMUG00000052534)	KRT33A (ENSMMUG00000062362) #32	KRTAP17-1 (ENSMMUG00000052890) #33	KRTAP16-1 (ENSMMUG00000050492) #34	KRTAP29-1 (ENSMMUG00000055553)
Crab-eating macaque	MODERN SPECIES	7	DNAJC7 (ENSMFAG00000031935)	CNP (ENSMFAG00000000621) #7	ODAD4 (ENSMFAG00000003792) #8	ENSMFAG00000051977	ACLY (ENSMFAG00000001561) #9	KLHL11 (ENSMFAG00000002946) #10	KLHL10 (ENSMFAG00000036160) #11	NT5C3B (ENSMFAG00000001374) #12	FKBP10 (ENSMFAG00000044293) #13	P3H4 (ENSMFAG00000004585) #14	JUP (ENSMFAG00000034238) #15	GAST (ENSMFAG00000054356) #16	ENSMFAG00000039233 ##17	ENSMFAG00000063606	KRT9 (ENSMFAG00000044683) #21	KRT19 (ENSMFAG00000003391) ##22	KRT16 (ENSMFAG00000039227) #20	ENSMFAG00000032417 #24	ENSMFAG00000055327	KRT36 (ENSMFAG00000038005) #25	KRT35 (ENSMFAG00000000514) #26	KRT32 (ENSMFAG00000041780) #27	KRT38 (ENSMFAG00000065364)	KRT37 (ENSMFAG00000062223)	ENSMFAG00000008150 #32	KRT34 (ENSMFAG00000038441)	ENSMFAG00000061108	KRT33B (ENSMFAG00000036674)	KRT33A (ENSMFAG00000022725) #32	KRTAP16-1 (ENSMFAG00000055186) #34	KRTAP29-1 (ENSMFAG00000057334)
Rhinopithecus	ANCESTRAL SPECIES	27	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881.j #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.c.a.b #17	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.a ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000156135.h.f.a.a
Golden snub-nosed monkey	MODERN SPECIES	3281														ENSRROG00000024533	KRT9 (ENSRROG00000041389) #21	ENSRROG00000037005 ##22	ENSRROG00000035145 #20	KRT35 (ENSRROG00000038674) #26	KRT32 (ENSRROG00000035134) #27	KRT38 (ENSRROG00000033575)	KRT37 (ENSRROG00000040536)	ENSRROG00000029790 #28	ENSRROG00000036160 #32	KRT34 (ENSRROG00000037794)	KRT33B (ENSRROG00000025609)	KRT33A (ENSRROG00000039853) #32	KRTAP17-1 (ENSRROG00000015767) #33	ENSRROG00000035860	ENSRROG00000031641	ENSRROG00000041467	ENSRROG00000043590
Black snub-nosed monkey	MODERN SPECIES	638	DPRX (ENSRBIG00000037069)	ENSRBIG00000012936 #9	KLHL11 (ENSRBIG00000032227) #10	KLHL10 (ENSRBIG00000037914) #11	NT5C3B (ENSRBIG00000042156) #12	FKBP10 (ENSRBIG00000035547) #13	P3H4 (ENSRBIG00000028375) #14	JUP (ENSRBIG00000033194) #15	HAP1 (ENSRBIG00000025280)	GAST (ENSRBIG00000034328) #16	EIF1 (ENSRBIG00000029738) #17	KRT14 (ENSRBIG00000035212) #19	KRT16 (ENSRBIG00000039275) #20	ENSRBIG00000040974	KRT9 (ENSRBIG00000030289) #21	ENSRBIG00000031457 ##22	KRT15 (ENSRBIG00000044981) #23	ENSRBIG00000039869 #24	KRT36 (ENSRBIG00000013893) #25	KRT35 (ENSRBIG00000032990) #26	KRT32 (ENSRBIG00000033774) #27	KRT38 (ENSRBIG00000033491)	KRT37 (ENSRBIG00000030552)	ENSRBIG00000040361 #28	ENSRBIG00000036342 #32	KRT34 (ENSRBIG00000043275)	KRT33B (ENSRBIG00000040698)	KRT33A (ENSRBIG00000030152) #32	KRTAP17-1 (ENSRBIG00000014556) #33	KRTAP16-1 (ENSRBIG00000029595) #34	ENSRBIG00000038944
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b.a.b ##22
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.a ##22	ENSGT00940000155258.s.b.a.b ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00390000015789.d.b.b ##17	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.a ##22	ENSGT00940000155258.s.b.a.b ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000163658 #34	ENSGT00940000164459
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.b ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00950000183407 #33	ENSGT00940000164459	ENSGT00940000156135.h.f.b.b
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664 #11	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792 #16	ENSGT00900000143461	ENSGT00390000015789.c.a.b #17	ENSGT00940000160681.A	ENSGT00940000154602.b #20	ENSGT00940000154602.a #19	ENSGT00940000162894 #21	ENSGT00940000155258.s.b.a.b ##22	ENSGT00940000154403.a.a #23	ENSGT00940000154403.a.b #24	ENSGT00940000161311 #25	ENSGT00940000161787 #26	ENSGT00940000161991 #27	ENSGT00940000163444.d	ENSGT00940000163444.c	ENSGT00940000162088 #28	ENSGT00940000153980.j.c #32	ENSGT00940000163426	ENSGT00940000163841.c	ENSGT00940000153980.j.d #32	ENSGT00940000156135.h.f.a	ENSGT00940000156135.h.f.b.a.b	ENSGT00940000156135.h.f.b.b
Drill	MODERN SPECIES	1283	CNP (ENSMLEG00000043126) #7	ODAD4 (ENSMLEG00000043448) #8	ACLY (ENSMLEG00000044346) #9	KLHL11 (ENSMLEG00000039765) #10	KLHL10 (ENSMLEG00000034366) #11	NT5C3B (ENSMLEG00000041940) #12	FKBP10 (ENSMLEG00000043284) #13	P3H4 (ENSMLEG00000038089) #14	JUP (ENSMLEG00000031175) #15	HAP1 (ENSMLEG00000010153)	EIF1 (ENSMLEG00000033362) #17	ENSMLEG00000033141	KRT16 (ENSMLEG00000043641) #20	KRT14 (ENSMLEG00000040314) #19	KRT9 (ENSMLEG00000026289) #21	KRT19 (ENSMLEG00000028531) ##22	KRT15 (ENSMLEG00000041020) #23	ENSMLEG00000041325 #24	KRT36 (ENSMLEG00000042997) #25	KRT35 (ENSMLEG00000038259) #26	KRT32 (ENSMLEG00000016779) #27	KRT38 (ENSMLEG00000035398)	KRT37 (ENSMLEG00000031244)	ENSMLEG00000034859 #28	ENSMLEG00000029216 #32	KRT34 (ENSMLEG00000044232)	KRT33B (ENSMLEG00000039830)	KRT33A (ENSMLEG00000037158) #32	ENSMLEG00000030744	ENSMLEG00000028770	ENSMLEG00000037142
Sooty mangabey	MODERN SPECIES	564	ODAD4 (ENSCATG00000033342) #8	ENSCATG00000042719	ACLY (ENSCATG00000035374) #9	KLHL11 (ENSCATG00000041626) #10	KLHL10 (ENSCATG00000005970) #11	NT5C3B (ENSCATG00000041710) #12	FKBP10 (ENSCATG00000034458) #13	P3H4 (ENSCATG00000032032) #14	JUP (ENSCATG00000030228) #15	HAP1 (ENSCATG00000012503)	GAST (ENSCATG00000042229) #16	ENSCATG00000040409	EIF1 (ENSCATG00000040397) #17	KRT14 (ENSCATG00000041183) #19	KRT9 (ENSCATG00000038671) #21	KRT19 (ENSCATG00000031681) ##22	KRT15 (ENSCATG00000044034) #23	ENSCATG00000003532 #24	KRT36 (ENSCATG00000044543) #25	KRT35 (ENSCATG00000044302) #26	KRT32 (ENSCATG00000000009) #27	KRT38 (ENSCATG00000041322)	KRT37 (ENSCATG00000043810)	ENSCATG00000013757 #28	ENSCATG00000044364 #32	KRT34 (ENSCATG00000041156)	KRT33B (ENSCATG00000040063)	KRT33A (ENSCATG00000039355) #32	ENSCATG00000029615	ENSCATG00000043038	ENSCATG00000042310
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b.a.b ##22
Black snub-nosed monkey	MODERN SPECIES	1174	CCDC66 (ENSRBIG00000027786)	TASOR (ENSRBIG00000035438)	ARHGEF3 (ENSRBIG00000002814)	IL17RD (ENSRBIG00000031337)	HESX1 (ENSRBIG00000043987)	ENSRBIG00000037327	APPL1 (ENSRBIG00000042486)	ASB14 (ENSRBIG00000035774)	DNAH12 (ENSRBIG00000026898)	ENSRBIG00000030897	ENSRBIG00000010504	PDE12 (ENSRBIG00000040704)	ARF4 (ENSRBIG00000034461)	DENND6A (ENSRBIG00000035704)	SLMAP (ENSRBIG00000040826)	ENSRBIG00000032653 ##22	FLNB (ENSRBIG00000028391)	DNASE1L3 (ENSRBIG00000029448)	ABHD6 (ENSRBIG00000034261)	RPP14 (ENSRBIG00000031797)	HTD2 (ENSRBIG00000029042)	PXK (ENSRBIG00000031289)	PDHB (ENSRBIG00000030636)	KCTD6 (ENSRBIG00000033835)	ACOX2 (ENSRBIG00000044259)	FAM107A (ENSRBIG00000027909)	FAM3D (ENSRBIG00000038367)	CFAP20DC (ENSRBIG00000043143)	FHIT (ENSRBIG00000024516)
Golden snub-nosed monkey	MODERN SPECIES	881	CCDC66 (ENSRROG00000041251)	TASOR (ENSRROG00000008200)	ARHGEF3 (ENSRROG00000036679)	IL17RD (ENSRROG00000023719)	HESX1 (ENSRROG00000032315)	ENSRROG00000039038	APPL1 (ENSRROG00000033584)	ASB14 (ENSRROG00000034785)	DNAH12 (ENSRROG00000033333)	ENSRROG00000003372	ENSRROG00000034900	PDE12 (ENSRROG00000031279)	ARF4 (ENSRROG00000034971)	DENND6A (ENSRROG00000039060)	SLMAP (ENSRROG00000041937)	ENSRROG00000026669 ##22	FLNB (ENSRROG00000041820)	DNASE1L3 (ENSRROG00000044465)	ABHD6 (ENSRROG00000037362)	RPP14 (ENSRROG00000045678)	HTD2 (ENSRROG00000030647)	PXK (ENSRROG00000044268)	PDHB (ENSRROG00000004890)	KCTD6 (ENSRROG00000035541)	ACOX2 (ENSRROG00000042193)	FAM107A (ENSRROG00000044494)	FAM3D (ENSRROG00000033238)	ENSRROG00000028325
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b.b ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b.b ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b.b ##22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b.b ##22
Olive baboon	MODERN SPECIES	1	MFF (ENSPANG00000011022)	TM4SF20 (ENSPANG00000014737)	AGFG1 (ENSPANG00000018257)	ENSPANG00000033490	SCYGR4 (ENSPANG00000031633)	ENSPANG00000037725	SLC19A3 (ENSPANG00000050314)	ENSPANG00000049137	ENSPANG00000014736	DAW1 (ENSPANG00000004189)	ENSPANG00000000611	SPHKAP (ENSPANG00000018299)	PID1 (ENSPANG00000042685)	DNER (ENSPANG00000007576)	ENSPANG00000045266	ENSPANG00000033183 ##22	ENSPANG00000045158	TRIP12 (ENSPANG00000001176)	FBXO36 (ENSPANG00000018256)	SLC16A14 (ENSPANG00000012401)	SP110 (ENSPANG00000014735)	SP140 (ENSPANG00000022785)	ENSPANG00000000877	CAB39 (ENSPANG00000021917)	ITM2C (ENSPANG00000006143)	GPR55 (ENSPANG00000009420)	SPATA3 (ENSPANG00000021585)	C2orf72 (ENSPANG00000004757)	PSMD1 (ENSPANG00000004701)	HTR2B (ENSPANG00000008393)	ARMC9 (ENSPANG00000016021)
Sauria	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Cryptodira	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000155258.s.b ##22
Abingdon island giant tortoise	MODERN SPECIES	2636																KRT19 (ENSCABG00000012523) ##22
Anura	ANCESTRAL SPECIES	15	ENSGT00940000157202	ENSGT00950000182812.A	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00390000012959.a #12	ENSGT00940000156331 #13	ENSGT00940000153814.b #14	ENSGT00940000156395 #15	ENSGT00940000162183	ENSGT00390000014792.a #16	ENSGT00390000015789.c #17	ENSGT00940000155258 #22	ENSGT00950000182969.B.c.a.a.c	ENSGT00950000183311.a	ENSGT00940000154403 #24	ENSGT00950000183311.b.a	ENSGT00950000183311.b.b	ENSGT00940000161311 #25	ENSGT00940000161077	ENSGT00950000182969.B.d	ENSGT00950000182969.B.c.a.a.d	ENSGT00940000159382.m.b.b	ENSGT00940000159382.m.b.a	ENSGT00940000159382.m.a.b	ENSGT00940000159382.m.a.a	ENSGT00940000159382.n	ENSGT00940000159655
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	3	P3H4 (ENSLLEG00000022959) #14	FKBP10 (ENSLLEG00000023029) #13	NT5C3B (ENSLLEG00000023148) #12	ENSLLEG00000023302	ENSLLEG00000023380	ENSLLEG00000023489	EIF1 (ENSLLEG00000023516) #17	ENSLLEG00000023614	ENSLLEG00000023893	KRT15 (ENSLLEG00000023980) #24	ENSLLEG00000024134	ENSLLEG00000024209	ENSLLEG00000024257 #25	ENSLLEG00000024316 #25	ENSLLEG00000024414 #25	ENSLLEG00000024708 #22	ENSLLEG00000024790 #25	ENSLLEG00000024922 #25	ENSLLEG00000025256 #25	ENSLLEG00000025822 #25	ENSLLEG00000026031 #25	ENSLLEG00000026162	ENSLLEG00000026226 #25	ENSLLEG00000026285 #25	ENSLLEG00000026329 #25	ENSLLEG00000026388	ENSLLEG00000026422 #25	ENSLLEG00000026765 #22	ENSLLEG00000026866 #25	ENSLLEG00000026919 #25	ENSLLEG00000027000 #25
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000024257 #25	ENSLLEG00000024316 #25	ENSLLEG00000024414 #25	ENSLLEG00000024708 #22	ENSLLEG00000024790 #25	ENSLLEG00000024922 #25	ENSLLEG00000025256 #25	ENSLLEG00000025822 #25	ENSLLEG00000026031 #25	ENSLLEG00000026162	ENSLLEG00000026226 #25	ENSLLEG00000026285 #25	ENSLLEG00000026329 #25	ENSLLEG00000026388	ENSLLEG00000026422 #25	ENSLLEG00000026765 #22	ENSLLEG00000026866 #25	ENSLLEG00000026919 #25	ENSLLEG00000027000 #25	ENSLLEG00000027759 #25	ENSLLEG00000027858	ENSLLEG00000027886	KRT23 (ENSLLEG00000027913)	ENSLLEG00000027954	ENSLLEG00000028003	ENSLLEG00000028013	ENSLLEG00000028070	ENSLLEG00000028103	ENSLLEG00000028166	ENSLLEG00000028459	ENSLLEG00000028494
Leishan spiny toad	MODERN SPECIES	2	ENSLLEG00000030963	ENSLLEG00000030977	ENSLLEG00000030982	ENSLLEG00000030988	ENSLLEG00000031000	ENSLLEG00000031016	ENSLLEG00000031020	CADM4 (ENSLLEG00000031031)	ENSLLEG00000031041	ENSLLEG00000031044	ENSLLEG00000031046	ENSLLEG00000031047	ENSLLEG00000031050	XRCC1 (ENSLLEG00000031056)	ENSLLEG00000031059	ENSLLEG00000031061 #22	ENSLLEG00000031064	PHLDB3 (ENSLLEG00000031069)	ENSLLEG00000031072	ENSLLEG00000031073	ENSLLEG00000031076	ENSLLEG00000031078	ENSLLEG00000031080	ENSLLEG00000031082	ENSLLEG00000031083	SMG9 (ENSLLEG00000031088)	ENSLLEG00000021143	KCNN4 (ENSLLEG00000021219)	ENSLLEG00000021308	ENSLLEG00000021359	ENSLLEG00000021390
Frog	MODERN SPECIES	1	znf385c (ENSXETG00000002298)	nkiras2 (ENSXETG00000002296)	dnajc7 (ENSXETG00000002295)	cnp (ENSXETG00000036371) #7	odad4 (ENSXETG00000002294) #8	acly (ENSXETG00000002292) #9	klhl11 (ENSXETG00000042941) #10	nt5c3b (ENSXETG00000002290) #12	fkbp10 (ENSXETG00000002288) #13	p3h4 (ENSXETG00000002284) #14	jup (ENSXETG00000006970) #15	hap1 (ENSXETG00000012489)	gast (ENSXETG00000012490) #16	terf2ip (ENSXETG00000012487)	eif1 (ENSXETG00000025051) #17	krt70 (ENSXETG00000012488) #22	krt19 (ENSXETG00000012482)	krt9.1 (ENSXETG00000038225)	krt9.2 (ENSXETG00000035234)	krt15.1 (ENSXETG00000029985)	krt15.2 (ENSXETG00000017467)	krt34 (ENSXETG00000036344) #25	krt23 (ENSXETG00000040013)	ENSXETG00000045090	krt12.1 (ENSXETG00000045813)	krt12.2 (ENSXETG00000021341)	krt20 (ENSXETG00000030511)	krt12.3 (ENSXETG00000025345)	krt12.6 (ENSXETG00000037468)	krt53 (ENSXETG00000031985)	ENSXETG00000041456