Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	40	ENSGT00950000183034.B.m ##8	ENSGT00940000154186.a.q.e ##9	ENSGT00940000166587.d ##10	ENSGT00950000183050.b.b.b.a.a.a.a.b ##11	ENSGT00940000153464.B.z.b.h ##12	ENSGT00530000063410.a.r.c.a ##13	ENSGT00390000016551.j.a ##14	ENSGT00390000016551.j.b #14	ENSGT00940000161234.a #15	ENSGT00940000157597.e.a.b ##16	ENSGT00940000155345.q.c #17	ENSGT00940000157824.i.b #18	ENSGT00940000153408.B.t.d.a.b #19	ENSGT00390000008178.l #20	ENSGT00390000016883.k #21	ENSGT00390000017746.g #22	ENSGT00940000157593.a #23	ENSGT00700000104522 #24	ENSGT00940000158306.v.a #25	ENSGT00390000018409.h.d #26	ENSGT00390000009613.a.v.a #27	ENSGT00940000154335.b.e.a #28	ENSGT00950000183126.b.b.b #29	ENSGT00950000182946.lb.b.f.b	ENSGT00950000182946.lb.b.f.a	ENSGT00940000156169.a.b #30	ENSGT00940000157373.l.h #31	ENSGT01010000222287.B.a.a.a.a.a.a.b #33	ENSGT00940000155989.e.c #34	ENSGT00940000153956.a.b.a #35	ENSGT00940000155896.k.g #36
Cyprininae_a	ANCESTRAL SPECIES	35	ENSGT00950000183034.B.n #8	ENSGT00940000154186.a.q.f #9	ENSGT00940000166587.c #10	ENSGT00950000183050.b.b.b.a.a.a.a.a #11	ENSGT00940000153464.B.z.b.g #12	ENSGT00530000063410.a.r.c.b #13	ENSGT00390000016551.j.a ##14	ENSGT00390000016551.j.b #14	ENSGT00940000161234.a #15	ENSGT00940000157597.e.a.b ##16	ENSGT00940000155345.q.c #17	ENSGT00940000157824.i.b #18	ENSGT00940000153408.B.t.d.a.b #19	ENSGT00390000008178.l #20	ENSGT00390000016883.k #21	ENSGT00390000017746.g #22	ENSGT00940000157593.a #23	ENSGT00700000104522 #24	ENSGT00940000158306.v.a #25	ENSGT00390000018409.h.d #26	ENSGT00390000009613.a.v.a #27	ENSGT00940000154335.b.e.a #28	ENSGT00950000183126.b.b.b #29	ENSGT00950000182946.lb.b.f.b	ENSGT00950000182946.lb.b.f.a	ENSGT00940000156169.a.b #30	ENSGT00940000157373.l.h #31	ENSGT01010000222287.B.a.a.a.a.a.a.b #33	ENSGT00940000155989.e.c #34	ENSGT00940000153956.a.b.a #35	ENSGT00940000155896.k.g #36
Golden-line barbel	MODERN SPECIES	53	DYNLT1 (ENSSGRG00000010041) #7	RLF (ENSSGRG00000009969) #8	ENSSGRG00000009968 #9	ENSSGRG00000009966 #10	peli1b (ENSSGRG00000009965) #11	ugp2b (ENSSGRG00000009223) #12	mdh1ab (ENSSGRG00000009100) #13	ENSSGRG00000009096 #14	otx1 (ENSSGRG00000009093) #15	EHBP1 (ENSSGRG00000009079) #16	b3gnt2b (ENSSGRG00000009076) #17	ENSSGRG00000009075 #18	XPO1 (ENSSGRG00000008167) #19	SANBR (ENSSGRG00000008070) #20	pex13 (ENSSGRG00000008068) #21	PDZD8 (ENSSGRG00000008067) #22	slc18a2 (ENSSGRG00000008065) #23	kcnk18 (ENSSGRG00000008063) #24	sgms1a (ENSSGRG00000008062) #25	minpp1a (ENSSGRG00000008060) #26	papss2a (ENSSGRG00000004155) #27	ptena (ENSSGRG00000003648) #28	ENSSGRG00000003634 #29	SLC16A12 (ENSSGRG00000003605) #30	pank1a (ENSSGRG00000003496) #31	ENSSGRG00000003482 #32	ENSSGRG00000003479 #33	ENSSGRG00000003475 #34	ENSSGRG00000003460 #35	pcgf5a (ENSSGRG00000003454) #36	ppp1r3ca (ENSSGRG00000003451) #37
Common carp reference	MODERN SPECIES	30	zmpste24 (ENSCCRG00000057683)	ENSCCRG00000058941 #8	ENSCCRG00000049285 #9	ENSCCRG00000018709 #10	peli1b (ENSCCRG00000018790) #11	ugp2b (ENSCCRG00000018829) #12	mdh1ab (ENSCCRG00000026888) #13	WDPCP (ENSCCRG00000024549) ##14	otx1 (ENSCCRG00000067814) #15	EHBP1 (ENSCCRG00000022494) ##16	b3gnt2b (ENSCCRG00000053079) #17	ENSCCRG00000003438	ENSCCRG00000003451 #18	ENSCCRG00000055884 #19	ENSCCRG00000057670 #20	PDZD8 (ENSCCRG00000013188) #22	slc18a2 (ENSCCRG00000013071) #23	kcnk18 (ENSCCRG00000013054) #24	sgms1a (ENSCCRG00000070887) #25	papss2a (ENSCCRG00000055982) #27	ptena (ENSCCRG00000040992) #28	ENSCCRG00000040984 #29	ENSCCRG00000040975	SLC16A12 (ENSCCRG00000052901) #30	ENSCCRG00000040972	pank1a (ENSCCRG00000072473) #31	ENSCCRG00000055882 #33	ENSCCRG00000054383 #34	ENSCCRG00000024493 #35	pcgf5a (ENSCCRG00000063244) #36	ppp1r3ca (ENSCCRG00000070930) #37
Goldfish	MODERN SPECIES	8	zmpste24 (ENSCARG00000050800)	ENSCARG00000051074	atp5if1b (ENSCARG00000051081)	rpl13a (ENSCARG00000051111)	commd9 (ENSCARG00000051147)	ENSCARG00000051172	itsn2b (ENSCARG00000051607)	pfn4 (ENSCARG00000056064)	lpin1a (ENSCARG00000056121)	EHBP1 (ENSCARG00000056251) ##16	b3gnt2b (ENSCARG00000056269) #17	ENSCARG00000056285	XPO1 (ENSCARG00000056366) #19	SANBR (ENSCARG00000056640) #20	pex13 (ENSCARG00000056657) #21	PDZD8 (ENSCARG00000056678) #22	slc18a2 (ENSCARG00000056744) #23	kcnk18 (ENSCARG00000056765) #24	ENSCARG00000056777	dio2 (ENSCARG00000056787)	ENSCARG00000056814	ENSCARG00000056844	foxn3 (ENSCARG00000056869)	ston2 (ENSCARG00000056889)	nrxn3a (ENSCARG00000056966)	adck1 (ENSCARG00000057776)	slirp (ENSCARG00000057812)	alkbh1 (ENSCARG00000057822)	sptlc2a (ENSCARG00000057888)	ENSCARG00000058265	HHIPL1 (ENSCARG00000058287)
Cyprininae	ANCESTRAL SPECIES	313									ENSGT00390000016551.i ##14	ENSGT00940000161234.b ##15	ENSGT00940000157597.e.b ##16	ENSGT00940000155345.q.d ##17	ENSGT00940000153408.B.t.d.a.a ##19	ENSGT00390000008178.k ##20	ENSGT00390000016883.l ##21	ENSGT00390000017746.h ##22	ENSGT00940000157593.b ##23	ENSGT00940000165789	ENSGT00940000158306.v.b ##25	ENSGT00390000018409.h.c ##26	ENSGT00390000009613.a.v.b ##27	ENSGT00940000163053.c.a	ENSGT00950000183126.b.b.a ##29	ENSGT00940000157373.l.g ##31	ENSGT00940000165449	ENSGT01010000222287.B.a.a.a.a.a.a.a ##33	ENSGT00940000155989.e.d ##34	ENSGT00940000153956.a.b.b ##35	ENSGT00940000155896.k.h ##36	ENSGT00940000155648.B.b.d ##37	ENSGT00940000154372.b.c
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	480																PDZD8 (ENSCARG00000026265) ##22
Goldfish	MODERN SPECIES	987																PDZD8 (ENSCARG00000032340) ##22	slc18a2 (ENSCARG00000032379) ##23	ENSCARG00000032429	sgms1a (ENSCARG00000032443) ##25	minpp1a (ENSCARG00000032450) ##26
Cyprininae_a	ANCESTRAL SPECIES	304									ENSGT00390000016551.i ##14	ENSGT00940000161234.b ##15	ENSGT00940000157597.e.a.a.a ##16	ENSGT00940000155345.q.d ##17	ENSGT00940000153408.B.t.d.a.a ##19	ENSGT00390000008178.k ##20	ENSGT00390000016883.l ##21	ENSGT00390000017746.h ##22	ENSGT00940000157593.b ##23	ENSGT00940000165789	ENSGT00940000158306.v.b ##25	ENSGT00390000018409.h.c ##26	ENSGT00390000009613.a.v.b ##27	ENSGT00940000154335.b.e.b ##28	ENSGT00950000183126.b.b.a ##29	ENSGT00940000157373.l.g ##31	ENSGT00940000165449	ENSGT01010000222287.B.a.a.a.a.a.a.a ##33	ENSGT00940000155989.e.d ##34	ENSGT00940000153956.a.b.b ##35	ENSGT00940000155896.k.h ##36	ENSGT00940000155648.B.b.d ##37	ENSGT00940000154372.b.c
Common carp reference	MODERN SPECIES	4	ENSCCRG00000058947 ##8	ENSCCRG00000013697 ##9	ENSCCRG00000013690 ##10	peli1b (ENSCCRG00000024542) ##11	ugp2b (ENSCCRG00000024567) ##12	mdh1ab (ENSCCRG00000056932) ##13	otx1 (ENSCCRG00000063935) ##15	ENSCCRG00000073238	EHBP1 (ENSCCRG00000072862) ##16	ENSCCRG00000061352 #18	b3gnt2b (ENSCCRG00000082775) ##17	ENSCCRG00000073128	ENSCCRG00000003107 ##19	ENSCCRG00000002941 ##20	pex13 (ENSCCRG00000003017) ##21	ENSCCRG00000027247 ##22	slc18a2 (ENSCCRG00000027262) ##23	ENSCCRG00000080142	sgms1a (ENSCCRG00000027300) ##25	minpp1a (ENSCCRG00000027401) ##26	papss2a (ENSCCRG00000027413) ##27	ptena (ENSCCRG00000077527) ##28	ENSCCRG00000055135 ##29	pank1a (ENSCCRG00000027871) ##31	zgc:65997 (ENSCCRG00000070786)	ENSCCRG00000082306 ##33	ENSCCRG00000077844 ##34	ENSCCRG00000024565 ##35	pcgf5a (ENSCCRG00000024551) ##36	ppp1r3ca (ENSCCRG00000026811) ##37	ENSCCRG00000076912
Golden-line barbel	MODERN SPECIES	17										ENSSGRG00000007348 ##14	otx1 (ENSSGRG00000007339) ##15	EHBP1 (ENSSGRG00000006607) ##16	b3gnt2b (ENSSGRG00000006584) ##17	XPO1 (ENSSGRG00000004767) ##19	SANBR (ENSSGRG00000004691) ##20	PDZD8 (ENSSGRG00000004690) ##22	slc18a2 (ENSSGRG00000004688) ##23	ENSSGRG00000004682	sgms1a (ENSSGRG00000004680) ##25	minpp1a (ENSSGRG00000004678) ##26	papss2a (ENSSGRG00000001415) ##27	ptena (ENSSGRG00000001060) ##28	ENSSGRG00000001058 ##29	pank1a (ENSSGRG00000001051) ##31	zgc:65997 (ENSSGRG00000001038)	zgc:65997 (ENSSGRG00000001035)	ENSSGRG00000001033 ##33	ANKRD1 (ENSSGRG00000001024) ##35	pcgf5a (ENSSGRG00000001021) ##36	ppp1r3ca (ENSSGRG00000001019) ##37	ENSSGRG00000001017