Ovalentaria ANCESTRAL SPECIES 10 ENSGT00940000166431 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A Atherinomorphae ANCESTRAL SPECIES 39 ENSGT00940000155369.A.d.a ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00900000141196 #13 Cyprinodontiformes ANCESTRAL SPECIES 40 ENSGT00940000155369.A.d.a ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 Cyprinodontoidei ANCESTRAL SPECIES 51 ENSGT00940000158051 #7 ENSGT00940000158745 #8 ENSGT00390000002766.b.b #9 ENSGT00390000001332 #10 ENSGT00950000183024.a.b.a #11 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00390000012397 #31 ENSGT00940000162596 #32 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 ENSGT00390000002751 #37 Poeciliinae ANCESTRAL SPECIES 8 ENSGT00940000158051 #7 ENSGT00940000158745 #8 ENSGT00390000002766.b.b #9 ENSGT00390000001332 #10 ENSGT00950000183024.a.b.a #11 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 ENSGT00390000002751 #37 Poecilia ANCESTRAL SPECIES 57 ENSGT00940000158051 #7 ENSGT00940000158745 #8 ENSGT00390000002766.b.b #9 ENSGT00390000001332 #10 ENSGT00950000183024.a.b.a #11 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 ENSGT00390000002751 #37 NAME_6 ANCESTRAL SPECIES 163 ENSGT00940000158051 #7 ENSGT00940000158745 #8 ENSGT00390000002766.b.b #9 ENSGT00390000001332 #10 ENSGT00950000183024.a.b.a #11 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 Sailfin molly MODERN SPECIES 372 lgals3b (ENSPLAG00000003808) #15 hikeshi (ENSPLAG00000003779) #16 hectd1 (ENSPLAG00000003762) #17 ap4s1 (ENSPLAG00000003677) #18 strn3 (ENSPLAG00000003667) #19 scfd1 (ENSPLAG00000003632) #20 g2e3 (ENSPLAG00000000532) #21 ehd4 (ENSPLAG00000003565) #22 slc3a2b (ENSPLAG00000003555) #23 zgc:109986 (ENSPLAG00000003536) #24 BAZ1A (ENSPLAG00000003514) #25 cfl2 (ENSPLAG00000003498) #26 snx6 (ENSPLAG00000003489) #27 psma3 (ENSPLAG00000003463) #28 arid4a (ENSPLAG00000003432) #29 timm9 (ENSPLAG00000003410) #30 ENSPLAG00000003381 #31 irf2bpl (ENSPLAG00000003320) #32 dkc1 (ENSPLAG00000003272) #34 ENSPLAG00000003225 #35 cinp (ENSPLAG00000003214) #36 Amazon molly MODERN SPECIES 718 lgals3b (ENSPFOG00000018342) #15 hectd1 (ENSPFOG00000018359) #17 ap4s1 (ENSPFOG00000018416) #18 strn3 (ENSPFOG00000018432) #19 scfd1 (ENSPFOG00000018476) #20 g2e3 (ENSPFOG00000018499) #21 ehd4 (ENSPFOG00000018511) #22 slc3a2b (ENSPFOG00000018522) #23 zgc:109986 (ENSPFOG00000018534) #24 BAZ1A (ENSPFOG00000018550) #25 cfl2 (ENSPFOG00000018584) #26 snx6 (ENSPFOG00000018600) #27 psma3 (ENSPFOG00000018619) #28 arid4a (ENSPFOG00000018637) #29 timm9 (ENSPFOG00000018642) #30 ENSPFOG00000023947 #31 dact1 (ENSPFOG00000023754) #33 dkc1 (ENSPFOG00000018653) #34 ENSPFOG00000018672 #35 cinp (ENSPFOG00000018677) #36 Guppy MODERN SPECIES 453 egln3 (ENSPREG00000002945) #8 sptssa (ENSPREG00000002968) #9 eapp (ENSPREG00000002981) #10 PRKD1 (ENSPREG00000003011) #11 ENSPREG00000003042 foxg1a (ENSPREG00000003063) #12 jmjd7 (ENSPREG00000003079) #13 ENSPREG00000003117 #14 hikeshi (ENSPREG00000003130) #16 hectd1 (ENSPREG00000003161) #17 ap4s1 (ENSPREG00000003331) #18 strn3 (ENSPREG00000003359) #19 scfd1 (ENSPREG00000003386) #20 ENSPREG00000003478 g2e3 (ENSPREG00000003497) #21 ehd4 (ENSPREG00000003513) #22 slc3a2b (ENSPREG00000003533) #23 zgc:109986 (ENSPREG00000003548) #24 BAZ1A (ENSPREG00000003601) #25 cfl2 (ENSPREG00000003752) #26 snx6 (ENSPREG00000003810) #27 psma3 (ENSPREG00000003841) #28 ENSPREG00000003879 #29 ENSPREG00000003986 #31 timm9 (ENSPREG00000004051) #30 ENSPREG00000004074 #33 dkc1 (ENSPREG00000004100) #34 ENSPREG00000004205 #35 ENSPREG00000004217 #37 tecpr2 (ENSPREG00000004251) ankrd9 (ENSPREG00000004299) Platyfish MODERN SPECIES 10 AKAP6 (ENSXMAG00000017748) NPAS3 (ENSXMAG00000000074) #7 egln3 (ENSXMAG00000000068) #8 ENSXMAG00000021280 eapp (ENSXMAG00000028528) #10 PRKD1 (ENSXMAG00000001499) #11 foxg1a (ENSXMAG00000024501) #12 jmjd7 (ENSXMAG00000014939) #13 fbxo34 (ENSXMAG00000025098) #14 lgals3b (ENSXMAG00000014963) #15 hectd1 (ENSXMAG00000009354) #17 ap4s1 (ENSXMAG00000024600) #18 strn3 (ENSXMAG00000009308) #19 scfd1 (ENSXMAG00000029757) #20 g2e3 (ENSXMAG00000021115) #21 ehd4 (ENSXMAG00000021228) #22 slc3a2b (ENSXMAG00000004796) #23 zgc:109986 (ENSXMAG00000022689) #24 BAZ1A (ENSXMAG00000004820) #25 cfl2 (ENSXMAG00000028653) #26 snx6 (ENSXMAG00000004865) #27 psma3 (ENSXMAG00000004893) #28 arid4a (ENSXMAG00000004904) #29 timm9 (ENSXMAG00000029156) #30 ENSXMAG00000004916 #31 irf2bpl (ENSXMAG00000021096) #32 DACT1 (ENSXMAG00000004918) #33 dkc1 (ENSXMAG00000004919) #34 ENSXMAG00000004929 #35 cinp (ENSXMAG00000004931) #36 ENSXMAG00000004932 NAME_4 ANCESTRAL SPECIES 124 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 ENSGT00390000002751 #37 ENSGT00940000157283 Mummichog MODERN SPECIES 2434 foxg1a (ENSFHEG00000005233) #12 jmjd7 (ENSFHEG00000005212) #13 fbxo34 (ENSFHEG00000005190) #14 lgals3b (ENSFHEG00000005165) #15 hikeshi (ENSFHEG00000005142) #16 hikeshi (ENSFHEG00000005130) #16 hectd1 (ENSFHEG00000005109) #17 ap4s1 (ENSFHEG00000005021) #18 strn3 (ENSFHEG00000004993) #19 ENSFHEG00000004922 #20 ehd4 (ENSFHEG00000004908) #22 slc3a2b (ENSFHEG00000004886) #23 zgc:109986 (ENSFHEG00000004880) #24 BAZ1A (ENSFHEG00000004873) #25 cfl2 (ENSFHEG00000004854) #26 snx6 (ENSFHEG00000004824) #27 psma3 (ENSFHEG00000004782) #28 arid4a (ENSFHEG00000004741) #29 timm9 (ENSFHEG00000004703) #30 irf2bpl (ENSFHEG00000004684) #32 dact1 (ENSFHEG00000004639) #33 dkc1 (ENSFHEG00000004627) #34 ENSFHEG00000004578 #35 cinp (ENSFHEG00000004564) #36 ENSFHEG00000004552 #37 tecpr2 (ENSFHEG00000004513) Sheepshead minnow MODERN SPECIES 705 ENSCVAG00000007921 timm9 (ENSCVAG00000007908) #30 ENSCVAG00000000213 #29 psma3 (ENSCVAG00000007866) #28 snx6 (ENSCVAG00000007836) #27 cfl2 (ENSCVAG00000007753) #26 ENSCVAG00000000639 zgc:109986 (ENSCVAG00000007198) #24 ENSCVAG00000007172 strn3 (ENSCVAG00000007148) #19 scfd1 (ENSCVAG00000007054) #20 g2e3 (ENSCVAG00000007007) #21 ehd4 (ENSCVAG00000006962) #22 slc3a2b (ENSCVAG00000006935) #23 ENSCVAG00000006850 #17 ENSCVAG00000006844 #17 hikeshi (ENSCVAG00000000912) #16 ENSCVAG00000006805 #15 fbxo34 (ENSCVAG00000006743) #14 jmjd7 (ENSCVAG00000006736) #13 foxg1a (ENSCVAG00000006715) #12 Aplocheiloidei ANCESTRAL SPECIES 107 ENSGT00940000155369.A.d.a ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00390000012397 #31 ENSGT00940000162596 #32 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00900000141196 #13 ENSGT00940000160678.a #12 Turquoise killifish MODERN SPECIES 1625 jade1 (ENSNFUG00015011192) nsd2 (ENSNFUG00015011241) letm1 (ENSNFUG00015011439) TBPL2 (ENSNFUG00015012475) tbpl2 (ENSNFUG00015012481) MDGA2 (ENSNFUG00015012518) HECTD1 (ENSNFUG00015012796) #17 ENSNFUG00015012840 ENSNFUG00015012844 strn3 (ENSNFUG00015012868) #19 coch (ENSNFUG00015013227) ENSNFUG00015013267 ENSNFUG00015013270 SLY1 (ENSNFUG00015013309) #20 G2E3 (ENSNFUG00015014986) #21 ehd4 (ENSNFUG00015015073) #22 ENSNFUG00015015903 Nfu_g_1_021746 (ENSNFUG00015015910) #24 CFL2 (ENSNFUG00015015955) #26 snx6 (ENSNFUG00015016014) #27 psma3 (ENSNFUG00015004831) #28 ENSNFUG00015005051 KIAA0586 (ENSNFUG00015005092) #31 ENSNFUG00015005146 ENSNFUG00015005150 ENSNFUG00015005157 ENSNFUG00015005174 ENSNFUG00015005185 ENSNFUG00015005192 ENSNFUG00015005202 ENSNFUG00015005214 Mangrove rivulus MODERN SPECIES 111 pip4k2aa (ENSKMAG00000015725) msrb2 (ENSKMAG00000015769) c8g (ENSKMAG00000015787) ENSKMAG00000015810 CNTNAP2 (ENSKMAG00000015875) tpk1 (ENSKMAG00000015988) sec61g (ENSKMAG00000016021) si:dkey-94e7.2 (ENSKMAG00000016038) ENSKMAG00000016065 ENSKMAG00000016077 relch (ENSKMAG00000016103) pign (ENSKMAG00000016146) hnf4g (ENSKMAG00000016217) pex2 (ENSKMAG00000016289) ZFHX4 (ENSKMAG00000016330) ehd4 (ENSKMAG00000016382) #22 exoc3l4 (ENSKMAG00000016399) Oryzias ANCESTRAL SPECIES 3 ENSGT00390000008624 ENSGT00390000004599 ENSGT00940000158993 ENSGT00940000160181.i ENSGT00940000153168.C.a.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00940000159561.m Oryzias_b ANCESTRAL SPECIES 12 ENSGT00940000158221 ENSGT00390000008624 ENSGT00390000004599 ENSGT00940000158993 ENSGT00940000160181.i ENSGT00940000153168.C.a.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00900000141196 #13 Indian medaka MODERN SPECIES alkbh1 (ENSOMEG00000019337) osr1 (ENSOMEG00000019345) rdh14a (ENSOMEG00000019363) zgc:123321 (ENSOMEG00000019377) foxg1a (ENSOMEG00000019381) #12 PRKD1 (ENSOMEG00000019479) #11 ENSOMEG00000019526 #17 ENSOMEG00000019532 #17 ap4s1 (ENSOMEG00000019544) #18 strn3 (ENSOMEG00000019588) #19 coch (ENSOMEG00000019601) ENSOMEG00000000656 ENSOMEG00000000520 scfd1 (ENSOMEG00000019697) #20 g2e3 (ENSOMEG00000019733) #21 ehd4 (ENSOMEG00000019758) #22 slc3a2b (ENSOMEG00000019772) #23 ENSOMEG00000019786 zgc:109986 (ENSOMEG00000019806) #24 BAZ1A (ENSOMEG00000019851) #25 cfl2 (ENSOMEG00000019883) #26 snx6 (ENSOMEG00000019916) #27 psma3 (ENSOMEG00000019957) #28 ENSOMEG00000019966 #29 ENSOMEG00000019997 #29 timm9 (ENSOMEG00000020017) #30 irf2bpl (ENSOMEG00000020036) #32 ENSOMEG00000020089 #31 DACT1 (ENSOMEG00000020108) #33 lgals3b (ENSOMEG00000000530) #15 fbxo34 (ENSOMEG00000020131) #14 Javanese ricefish MODERN SPECIES 14 TATDN3 (ENSOJAG00000014917) COQ8A (ENSOJAG00000014975) exd2 (ENSOJAG00000015074) numb (ENSOJAG00000015133) rdh14a (ENSOJAG00000015180) YIPF7 (ENSOJAG00000015184) foxg1a (ENSOJAG00000015190) #12 PRKD1 (ENSOJAG00000015216) #11 hikeshi (ENSOJAG00000015904) #16 ENSOJAG00000015909 #17 ap4s1 (ENSOJAG00000015956) #18 strn3 (ENSOJAG00000015993) #19 coch (ENSOJAG00000016617) scfd1 (ENSOJAG00000016699) #20 g2e3 (ENSOJAG00000017345) #21 ehd4 (ENSOJAG00000017357) #22 ENSOJAG00000017419 #23 zgc:109986 (ENSOJAG00000017424) #24 cfl2 (ENSOJAG00000017459) #26 snx6 (ENSOJAG00000017479) #27 psma3 (ENSOJAG00000017765) #28 arid4a (ENSOJAG00000017865) #29 ENSOJAG00000017907 ENSOJAG00000017930 #31 ENSOJAG00000017941 #33 lgals3b (ENSOJAG00000017991) #15 fbxo34 (ENSOJAG00000018033) #14 jmjd7 (ENSOJAG00000018049) #13 tbpl2 (ENSOJAG00000018061) atg14 (ENSOJAG00000018074) ENSOJAG00000018125 Oryzias_a ANCESTRAL SPECIES 11 ENSGT00390000008624 ENSGT00390000004599 ENSGT00940000158993 ENSGT00940000160181.i ENSGT00940000153168.C.a.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00940000159561.m Chinese medaka MODERN SPECIES 631 nrxn3a (ENSOSIG00000011783) ENSOSIG00000012073 adck1 (ENSOSIG00000012077) slirp (ENSOSIG00000012183) alkbh1 (ENSOSIG00000012185) osr1 (ENSOSIG00000012187) zgc:123321 (ENSOSIG00000012188) foxg1a (ENSOSIG00000012189) #12 PRKD1 (ENSOSIG00000012200) #11 hikeshi (ENSOSIG00000013285) #16 ENSOSIG00000013288 #17 ap4s1 (ENSOSIG00000013343) #18 strn3 (ENSOSIG00000013379) #19 coch (ENSOSIG00000017074) g2e3 (ENSOSIG00000017364) #21 ehd4 (ENSOSIG00000017520) #22 ENSOSIG00000017806 #23 zgc:109986 (ENSOSIG00000017928) #24 cfl2 (ENSOSIG00000017937) #26 snx6 (ENSOSIG00000017956) #27 psma3 (ENSOSIG00000018012) #28 ENSOSIG00000018060 #29 timm9 (ENSOSIG00000018069) #30 irf2bpl (ENSOSIG00000018078) #32 DACT1 (ENSOSIG00000018120) #33 lgals3b (ENSOSIG00000018121) #15 fbxo34 (ENSOSIG00000018122) #14 tbpl2 (ENSOSIG00000018132) atg14 (ENSOSIG00000018138) ENSOSIG00000018140 ENSOSIG00000018164 Japanese Medaka HdrR MODERN SPECIES 14 ENSORLG00000027646 ENSORLG00000029926 zgc:123321 (ENSORLG00000029255) foxg1a (ENSORLG00000010723) #12 ENSORLG00000010716 #11 ENSORLG00000027976 ENSORLG00000023329 hikeshi (ENSORLG00000010707) #16 hectd1 (ENSORLG00000010702) #17 ap4s1 (ENSORLG00000010658) #18 strn3 (ENSORLG00000010638) #19 coch (ENSORLG00000010591) ENSORLG00000022055 scfd1 (ENSORLG00000010536) #20 g2e3 (ENSORLG00000010482) #21 ehd4 (ENSORLG00000010433) #22 ENSORLG00000010405 #23 zgc:109986 (ENSORLG00000010399) #24 BAZ1A (ENSORLG00000010374) #25 cfl2 (ENSORLG00000010332) #26 snx6 (ENSORLG00000010318) #27 psma3 (ENSORLG00000010288) #28 ENSORLG00000010245 #29 ENSORLG00000027454 #29 ENSORLG00000021949 ENSORLG00000023322 #31 ENSORLG00000010158 #33 lgals3b (ENSORLG00000028430) #15 fbxo34 (ENSORLG00000023986) #14 tbpl2 (ENSORLG00000028018) jmjd7 (ENSORLG00000010130) #13 Ovalentaria_B ANCESTRAL SPECIES 24 ENSGT00940000166431 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A Pomacentridae ANCESTRAL SPECIES 78 ENSGT00940000166431 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051.h #7 Bicolor damselfish MODERN SPECIES 325 snx6 (ENSSPAG00000004652) #27 cfl2 (ENSSPAG00000004688) #26 BAZ1A (ENSSPAG00000004699) #25 zgc:109986 (ENSSPAG00000004813) #24 slc3a2b (ENSSPAG00000004822) #23 ENSSPAG00000004851 dhrs13a.2 (ENSSPAG00000004890) dhrs13a.1 (ENSSPAG00000004932) HEATR5A (ENSSPAG00000004991) hectd1 (ENSSPAG00000005095) #17 ap4s1 (ENSSPAG00000005192) #18 strn3 (ENSSPAG00000005208) #19 coch (ENSSPAG00000005245) scfd1 (ENSSPAG00000005313) #20 g2e3 (ENSSPAG00000005396) #21 ehd4 (ENSSPAG00000005490) #22 ENSSPAG00000005512 ENSSPAG00000005529 foxg1a (ENSSPAG00000005592) #12 Pomacentridae_A ANCESTRAL SPECIES 93 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b.b ENSGT00940000155599.i.a.b.a ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 Spiny chromis MODERN SPECIES 1150 coch (ENSAPOG00000004761) scfd1 (ENSAPOG00000004890) #20 g2e3 (ENSAPOG00000004932) #21 ehd4 (ENSAPOG00000004967) #22 ENSAPOG00000005186 foxg1a (ENSAPOG00000005212) #12 Amphiprion ANCESTRAL SPECIES 181 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745.p #8 ENSGT00950000183095.a.b.a.a #19 ENSGT00970000193421.B #18 ENSGT00940000156572 #17 ENSGT00390000006205.b ENSGT00390000004056 #16 ENSGT00940000155599.i.a.b.a ENSGT00940000155599.i.a.b.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d #23 Orange clownfish MODERN SPECIES 9 ENSAPEG00000012622 dhrs13a.1 (ENSAPEG00000012638) DHRS13 (ENSAPEG00000012661) hikeshi (ENSAPEG00000012684) #16 HEATR5A (ENSAPEG00000012740) hectd1 (ENSAPEG00000012851) #17 ap4s1 (ENSAPEG00000012966) #18 strn3 (ENSAPEG00000012987) #19 sptssa (ENSAPEG00000013049) #9 ENSAPEG00000013061 eapp (ENSAPEG00000013072) #10 coch (ENSAPEG00000013099) ENSAPEG00000013135 scfd1 (ENSAPEG00000013158) #20 g2e3 (ENSAPEG00000013279) #21 ehd4 (ENSAPEG00000013326) #22 ENSAPEG00000013356 ENSAPEG00000013375 ENSAPEG00000013439 ENSAPEG00000013566 foxg1a (ENSAPEG00000013581) #12 ENSAPEG00000013604 ENSAPEG00000013621 ENSAPEG00000013638 PRKD1 (ENSAPEG00000013662) #11 ENSAPEG00000013707 ENSAPEG00000013738 eapp (ENSAPEG00000013780) #10 ENSAPEG00000013813 sptssa (ENSAPEG00000013841) #9 egln3 (ENSAPEG00000013864) #8 Clown anemonefish MODERN SPECIES 469 ehd4 (ENSAOCG00000018965) #22 Cichlidae ANCESTRAL SPECIES 37 ENSGT00940000161060 ENSGT00940000155554 ENSGT00390000015102.a.b ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A Pseudocrenilabrinae ANCESTRAL SPECIES 8 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000157038.a.b.u.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b.c ##35 Pseudocrenilabrinae_A ANCESTRAL SPECIES 6 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000157038.a.b.u.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000178522 ENSGT00940000153431.a.v.b Haplochromini ANCESTRAL SPECIES 42 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000157038.a.b.u.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000178522 ENSGT00940000153431.a.v.b Burton s mouthbrooder MODERN SPECIES 569 ENSHBUG00000016632 #17 ap4s1 (ENSHBUG00000000489) #18 strn3 (ENSHBUG00000000483) #19 coch (ENSHBUG00000016503) scfd1 (ENSHBUG00000016430) #20 g2e3 (ENSHBUG00000016168) #21 ehd4 (ENSHBUG00000016153) #22 ENSHBUG00000016091 ENSHBUG00000015705 foxg1a (ENSHBUG00000015682) #12 PRKD1 (ENSHBUG00000015648) #11 eapp (ENSHBUG00000015496) #10 sptssa (ENSHBUG00000015484) #9 egln3 (ENSHBUG00000015449) #8 Haplochromini_A ANCESTRAL SPECIES 44 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000178522 ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b.c ##35 P. nyererei MODERN SPECIES 324 hikeshi (ENSPNYG00000013322) #16 HEATR5A (ENSPNYG00000013359) hectd1 (ENSPNYG00000013578) #17 ap4s1 (ENSPNYG00000013670) #18 strn3 (ENSPNYG00000013710) #19 coch (ENSPNYG00000013761) scfd1 (ENSPNYG00000013788) #20 g2e3 (ENSPNYG00000013844) #21 ehd4 (ENSPNYG00000013916) #22 ENSPNYG00000013995 foxg1a (ENSPNYG00000014291) #12 PRKD1 (ENSPNYG00000014311) #11 eapp (ENSPNYG00000014361) #10 sptssa (ENSPNYG00000014367) #9 egln3 (ENSPNYG00000014374) #8 NPAS3 (ENSPNYG00000014398) #7 ENSPNYG00000014421 ENSPNYG00000014444 ENSPNYG00000014476 ARHGAP5 (ENSPNYG00000014497) nubpl (ENSPNYG00000014525) dtd2 (ENSPNYG00000014554) ENSPNYG00000014580 DTD2 (ENSPNYG00000014598) Haplochromini_B ANCESTRAL SPECIES 119 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 Zebra mbuna DUPLICATION Zebra mbuna MODERN SPECIES 142 HEATR5A (ENSMZEG00005004107) hectd1 (ENSMZEG00005004328) #17 ap4s1 (ENSMZEG00005004423) #18 strn3 (ENSMZEG00005004442) #19 coch (ENSMZEG00005004465) scfd1 (ENSMZEG00005004486) #20 g2e3 (ENSMZEG00005004527) #21 ehd4 (ENSMZEG00005004542) #22 Zebra mbuna MODERN SPECIES 166 ehd4 (ENSMZEG00005024022) #22 ENSMZEG00005024015 ENSMZEG00005024003 foxg1a (ENSMZEG00005024002) #12 ENSMZEG00005024000 Eastern happy MODERN SPECIES 5 gemin4 (ENSACLG00000016073) TLCD3A (ENSACLG00000016090) usp2a (ENSACLG00000016110) ENSACLG00000016164 tbcela (ENSACLG00000016175) ENSACLG00000016329 ENSACLG00000016344 hikeshi (ENSACLG00000016412) #16 HEATR5A (ENSACLG00000016427) hectd1 (ENSACLG00000016633) #17 ap4s1 (ENSACLG00000016857) #18 strn3 (ENSACLG00000016888) #19 coch (ENSACLG00000016965) scfd1 (ENSACLG00000017070) #20 g2e3 (ENSACLG00000017147) #21 ehd4 (ENSACLG00000017182) #22 ENSACLG00000017296 foxg1a (ENSACLG00000017908) #12 ENSACLG00000017960 ENSACLG00000017974 CLCN2 (ENSACLG00000017984) ENSACLG00000018024 usf1l (ENSACLG00000018193) gkup (ENSACLG00000018216) ubash3bb (ENSACLG00000018288) ENSACLG00000018354 hmbsa (ENSACLG00000018367) arcn1b (ENSACLG00000018442) PHLDB1 (ENSACLG00000018497) ENSACLG00000018565 ENSACLG00000018589 Lyretail cichlid MODERN SPECIES 299 gabrr2a (ENSNBRG00000022229) syne3 (ENSNBRG00000022250) ENSNBRG00000022281 dicer1 (ENSNBRG00000022306) ENSNBRG00000022352 galcb (ENSNBRG00000022375) hikeshi (ENSNBRG00000022423) #16 HEATR5A (ENSNBRG00000022437) ENSNBRG00000022477 #17 ap4s1 (ENSNBRG00000022483) #18 strn3 (ENSNBRG00000022491) #19 coch (ENSNBRG00000022518) scfd1 (ENSNBRG00000022555) #20 ENSNBRG00000022568 g2e3 (ENSNBRG00000022590) #21 ehd4 (ENSNBRG00000022623) #22 ENSNBRG00000022636 ENSNBRG00000022651 foxg1a (ENSNBRG00000022682) #12 PRKD1 (ENSNBRG00000022691) #11 eapp (ENSNBRG00000022713) #10 sptssa (ENSNBRG00000022727) #9 egln3 (ENSNBRG00000022731) #8 NPAS3 (ENSNBRG00000022746) #7 ENSNBRG00000022764 ENSNBRG00000022821 ARHGAP5 (ENSNBRG00000022830) nubpl (ENSNBRG00000022842) dtd2 (ENSNBRG00000022855) ENSNBRG00000022862 ENSNBRG00000022875 ##35 Nile tilapia MODERN SPECIES 10 ENSONIG00000041208 ak7b (ENSONIG00000001719) ENSONIG00000042145 zgc:109986 (ENSONIG00000001727) #24 ENSONIG00000030475 ENSONIG00000032516 slc3a2b (ENSONIG00000001729) #23 hikeshi (ENSONIG00000020832) #16 HEATR5A (ENSONIG00000001918) hectd1 (ENSONIG00000001899) #17 ap4s1 (ENSONIG00000001896) #18 strn3 (ENSONIG00000001884) #19 coch (ENSONIG00000001879) scfd1 (ENSONIG00000001862) #20 g2e3 (ENSONIG00000001857) #21 ehd4 (ENSONIG00000038089) #22 ENSONIG00000001828 ENSONIG00000038497 foxg1a (ENSONIG00000029950) #12 PRKD1 (ENSONIG00000001814) #11 eapp (ENSONIG00000001809) #10 sptssa (ENSONIG00000036220) #9 egln3 (ENSONIG00000035400) #8 NPAS3 (ENSONIG00000037265) #7 AKAP6 (ENSONIG00000001789) ARHGAP5 (ENSONIG00000001785) nubpl (ENSONIG00000001779) ENSONIG00000027478 dtd2 (ENSONIG00000042067) ENSONIG00000041880 ENSONIG00000001775 ##35 Midas cichlid DUPLICATION Midas cichlid MODERN SPECIES 1450 g2e3 (ENSACIG00000022389) #21 ENSACIG00000022380 #22 Midas cichlid MODERN SPECIES 1289 ehd4 (ENSACIG00000005591) #22 ENSACIG00000005339 foxg1a (ENSACIG00000005304) #12 PRKD1 (ENSACIG00000005253) #11 ENSACIG00000005231 eapp (ENSACIG00000005205) #10 sptssa (ENSACIG00000005195) #9 egln3 (ENSACIG00000005177) #8 NPAS3 (ENSACIG00000005148) #7 ENSACIG00000005096 ENSACIG00000005080