Acanthomorphata ANCESTRAL SPECIES 117 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00970000193421.B #18 ENSGT00940000159386 ENSGT00550000074845 #20 Euacanthomorphacea ANCESTRAL SPECIES 52 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00970000193421.B #18 ENSGT00940000159386 ENSGT00550000074845 #20 Percomorphaceae ANCESTRAL SPECIES 51 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00900000141196 #13 ENSGT00940000159561.m ENSGT00390000011854 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00970000193421.B #18 ENSGT00940000159386 ENSGT00550000074845 #20 Percomorphaceae_B ANCESTRAL SPECIES 11 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A Ovalentaria ANCESTRAL SPECIES 10 ENSGT00940000166431 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A Atherinomorphae ANCESTRAL SPECIES 39 ENSGT00940000155369.A.d.a ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00900000141196 #13 Cyprinodontiformes ANCESTRAL SPECIES 40 ENSGT00940000155369.A.d.a ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 Cyprinodontoidei ANCESTRAL SPECIES 51 ENSGT00940000158051 #7 ENSGT00940000158745 #8 ENSGT00390000002766.b.b #9 ENSGT00390000001332 #10 ENSGT00950000183024.a.b.a #11 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00390000012397 #31 ENSGT00940000162596 #32 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 ENSGT00390000002751 #37 Poeciliinae ANCESTRAL SPECIES 8 ENSGT00940000158051 #7 ENSGT00940000158745 #8 ENSGT00390000002766.b.b #9 ENSGT00390000001332 #10 ENSGT00950000183024.a.b.a #11 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 ENSGT00390000002751 #37 Poecilia ANCESTRAL SPECIES 57 ENSGT00940000158051 #7 ENSGT00940000158745 #8 ENSGT00390000002766.b.b #9 ENSGT00390000001332 #10 ENSGT00950000183024.a.b.a #11 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 ENSGT00390000002751 #37 NAME_6 ANCESTRAL SPECIES 163 ENSGT00940000158051 #7 ENSGT00940000158745 #8 ENSGT00390000002766.b.b #9 ENSGT00390000001332 #10 ENSGT00950000183024.a.b.a #11 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 Sailfin molly MODERN SPECIES 372 lgals3b (ENSPLAG00000003808) #15 hikeshi (ENSPLAG00000003779) #16 hectd1 (ENSPLAG00000003762) #17 ap4s1 (ENSPLAG00000003677) #18 strn3 (ENSPLAG00000003667) #19 scfd1 (ENSPLAG00000003632) #20 g2e3 (ENSPLAG00000000532) #21 ehd4 (ENSPLAG00000003565) #22 slc3a2b (ENSPLAG00000003555) #23 zgc:109986 (ENSPLAG00000003536) #24 BAZ1A (ENSPLAG00000003514) #25 cfl2 (ENSPLAG00000003498) #26 snx6 (ENSPLAG00000003489) #27 psma3 (ENSPLAG00000003463) #28 arid4a (ENSPLAG00000003432) #29 timm9 (ENSPLAG00000003410) #30 ENSPLAG00000003381 #31 irf2bpl (ENSPLAG00000003320) #32 dkc1 (ENSPLAG00000003272) #34 ENSPLAG00000003225 #35 cinp (ENSPLAG00000003214) #36 Amazon molly MODERN SPECIES 718 lgals3b (ENSPFOG00000018342) #15 hectd1 (ENSPFOG00000018359) #17 ap4s1 (ENSPFOG00000018416) #18 strn3 (ENSPFOG00000018432) #19 scfd1 (ENSPFOG00000018476) #20 g2e3 (ENSPFOG00000018499) #21 ehd4 (ENSPFOG00000018511) #22 slc3a2b (ENSPFOG00000018522) #23 zgc:109986 (ENSPFOG00000018534) #24 BAZ1A (ENSPFOG00000018550) #25 cfl2 (ENSPFOG00000018584) #26 snx6 (ENSPFOG00000018600) #27 psma3 (ENSPFOG00000018619) #28 arid4a (ENSPFOG00000018637) #29 timm9 (ENSPFOG00000018642) #30 ENSPFOG00000023947 #31 dact1 (ENSPFOG00000023754) #33 dkc1 (ENSPFOG00000018653) #34 ENSPFOG00000018672 #35 cinp (ENSPFOG00000018677) #36 Guppy MODERN SPECIES 453 egln3 (ENSPREG00000002945) #8 sptssa (ENSPREG00000002968) #9 eapp (ENSPREG00000002981) #10 PRKD1 (ENSPREG00000003011) #11 ENSPREG00000003042 foxg1a (ENSPREG00000003063) #12 jmjd7 (ENSPREG00000003079) #13 ENSPREG00000003117 #14 hikeshi (ENSPREG00000003130) #16 hectd1 (ENSPREG00000003161) #17 ap4s1 (ENSPREG00000003331) #18 strn3 (ENSPREG00000003359) #19 scfd1 (ENSPREG00000003386) #20 ENSPREG00000003478 g2e3 (ENSPREG00000003497) #21 ehd4 (ENSPREG00000003513) #22 slc3a2b (ENSPREG00000003533) #23 zgc:109986 (ENSPREG00000003548) #24 BAZ1A (ENSPREG00000003601) #25 cfl2 (ENSPREG00000003752) #26 snx6 (ENSPREG00000003810) #27 psma3 (ENSPREG00000003841) #28 ENSPREG00000003879 #29 ENSPREG00000003986 #31 timm9 (ENSPREG00000004051) #30 ENSPREG00000004074 #33 dkc1 (ENSPREG00000004100) #34 ENSPREG00000004205 #35 ENSPREG00000004217 #37 tecpr2 (ENSPREG00000004251) ankrd9 (ENSPREG00000004299) Platyfish MODERN SPECIES 10 AKAP6 (ENSXMAG00000017748) NPAS3 (ENSXMAG00000000074) #7 egln3 (ENSXMAG00000000068) #8 ENSXMAG00000021280 eapp (ENSXMAG00000028528) #10 PRKD1 (ENSXMAG00000001499) #11 foxg1a (ENSXMAG00000024501) #12 jmjd7 (ENSXMAG00000014939) #13 fbxo34 (ENSXMAG00000025098) #14 lgals3b (ENSXMAG00000014963) #15 hectd1 (ENSXMAG00000009354) #17 ap4s1 (ENSXMAG00000024600) #18 strn3 (ENSXMAG00000009308) #19 scfd1 (ENSXMAG00000029757) #20 g2e3 (ENSXMAG00000021115) #21 ehd4 (ENSXMAG00000021228) #22 slc3a2b (ENSXMAG00000004796) #23 zgc:109986 (ENSXMAG00000022689) #24 BAZ1A (ENSXMAG00000004820) #25 cfl2 (ENSXMAG00000028653) #26 snx6 (ENSXMAG00000004865) #27 psma3 (ENSXMAG00000004893) #28 arid4a (ENSXMAG00000004904) #29 timm9 (ENSXMAG00000029156) #30 ENSXMAG00000004916 #31 irf2bpl (ENSXMAG00000021096) #32 DACT1 (ENSXMAG00000004918) #33 dkc1 (ENSXMAG00000004919) #34 ENSXMAG00000004929 #35 cinp (ENSXMAG00000004931) #36 ENSXMAG00000004932 NAME_4 ANCESTRAL SPECIES 124 ENSGT00940000160678.a #12 ENSGT00900000141196 #13 ENSGT00530000064222.b #14 ENSGT00940000165169.b.a #15 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00950000183181.B.a #33 ENSGT00510000047092 #34 ENSGT00530000069038.a.a #35 ENSGT00390000015784 #36 ENSGT00390000002751 #37 ENSGT00940000157283 Mummichog MODERN SPECIES 2434 foxg1a (ENSFHEG00000005233) #12 jmjd7 (ENSFHEG00000005212) #13 fbxo34 (ENSFHEG00000005190) #14 lgals3b (ENSFHEG00000005165) #15 hikeshi (ENSFHEG00000005142) #16 hikeshi (ENSFHEG00000005130) #16 hectd1 (ENSFHEG00000005109) #17 ap4s1 (ENSFHEG00000005021) #18 strn3 (ENSFHEG00000004993) #19 ENSFHEG00000004922 #20 ehd4 (ENSFHEG00000004908) #22 slc3a2b (ENSFHEG00000004886) #23 zgc:109986 (ENSFHEG00000004880) #24 BAZ1A (ENSFHEG00000004873) #25 cfl2 (ENSFHEG00000004854) #26 snx6 (ENSFHEG00000004824) #27 psma3 (ENSFHEG00000004782) #28 arid4a (ENSFHEG00000004741) #29 timm9 (ENSFHEG00000004703) #30 irf2bpl (ENSFHEG00000004684) #32 dact1 (ENSFHEG00000004639) #33 dkc1 (ENSFHEG00000004627) #34 ENSFHEG00000004578 #35 cinp (ENSFHEG00000004564) #36 ENSFHEG00000004552 #37 tecpr2 (ENSFHEG00000004513) Sheepshead minnow MODERN SPECIES 705 ENSCVAG00000007921 timm9 (ENSCVAG00000007908) #30 ENSCVAG00000000213 #29 psma3 (ENSCVAG00000007866) #28 snx6 (ENSCVAG00000007836) #27 cfl2 (ENSCVAG00000007753) #26 ENSCVAG00000000639 zgc:109986 (ENSCVAG00000007198) #24 ENSCVAG00000007172 strn3 (ENSCVAG00000007148) #19 scfd1 (ENSCVAG00000007054) #20 g2e3 (ENSCVAG00000007007) #21 ehd4 (ENSCVAG00000006962) #22 slc3a2b (ENSCVAG00000006935) #23 ENSCVAG00000006850 #17 ENSCVAG00000006844 #17 hikeshi (ENSCVAG00000000912) #16 ENSCVAG00000006805 #15 fbxo34 (ENSCVAG00000006743) #14 jmjd7 (ENSCVAG00000006736) #13 foxg1a (ENSCVAG00000006715) #12 Aplocheiloidei ANCESTRAL SPECIES 107 ENSGT00940000155369.A.d.a ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00390000012397 #31 ENSGT00940000162596 #32 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00900000141196 #13 ENSGT00940000160678.a #12 Turquoise killifish MODERN SPECIES 1625 jade1 (ENSNFUG00015011192) nsd2 (ENSNFUG00015011241) letm1 (ENSNFUG00015011439) TBPL2 (ENSNFUG00015012475) tbpl2 (ENSNFUG00015012481) MDGA2 (ENSNFUG00015012518) HECTD1 (ENSNFUG00015012796) #17 ENSNFUG00015012840 ENSNFUG00015012844 strn3 (ENSNFUG00015012868) #19 coch (ENSNFUG00015013227) ENSNFUG00015013267 ENSNFUG00015013270 SLY1 (ENSNFUG00015013309) #20 G2E3 (ENSNFUG00015014986) #21 ehd4 (ENSNFUG00015015073) #22 ENSNFUG00015015903 Nfu_g_1_021746 (ENSNFUG00015015910) #24 CFL2 (ENSNFUG00015015955) #26 snx6 (ENSNFUG00015016014) #27 psma3 (ENSNFUG00015004831) #28 ENSNFUG00015005051 KIAA0586 (ENSNFUG00015005092) #31 ENSNFUG00015005146 ENSNFUG00015005150 ENSNFUG00015005157 ENSNFUG00015005174 ENSNFUG00015005185 ENSNFUG00015005192 ENSNFUG00015005202 ENSNFUG00015005214 Mangrove rivulus MODERN SPECIES 111 pip4k2aa (ENSKMAG00000015725) msrb2 (ENSKMAG00000015769) c8g (ENSKMAG00000015787) ENSKMAG00000015810 CNTNAP2 (ENSKMAG00000015875) tpk1 (ENSKMAG00000015988) sec61g (ENSKMAG00000016021) si:dkey-94e7.2 (ENSKMAG00000016038) ENSKMAG00000016065 ENSKMAG00000016077 relch (ENSKMAG00000016103) pign (ENSKMAG00000016146) hnf4g (ENSKMAG00000016217) pex2 (ENSKMAG00000016289) ZFHX4 (ENSKMAG00000016330) ehd4 (ENSKMAG00000016382) #22 exoc3l4 (ENSKMAG00000016399) Oryzias ANCESTRAL SPECIES 3 ENSGT00390000008624 ENSGT00390000004599 ENSGT00940000158993 ENSGT00940000160181.i ENSGT00940000153168.C.a.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00940000159561.m Oryzias_b ANCESTRAL SPECIES 12 ENSGT00940000158221 ENSGT00390000008624 ENSGT00390000004599 ENSGT00940000158993 ENSGT00940000160181.i ENSGT00940000153168.C.a.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00900000141196 #13 Indian medaka MODERN SPECIES alkbh1 (ENSOMEG00000019337) osr1 (ENSOMEG00000019345) rdh14a (ENSOMEG00000019363) zgc:123321 (ENSOMEG00000019377) foxg1a (ENSOMEG00000019381) #12 PRKD1 (ENSOMEG00000019479) #11 ENSOMEG00000019526 #17 ENSOMEG00000019532 #17 ap4s1 (ENSOMEG00000019544) #18 strn3 (ENSOMEG00000019588) #19 coch (ENSOMEG00000019601) ENSOMEG00000000656 ENSOMEG00000000520 scfd1 (ENSOMEG00000019697) #20 g2e3 (ENSOMEG00000019733) #21 ehd4 (ENSOMEG00000019758) #22 slc3a2b (ENSOMEG00000019772) #23 ENSOMEG00000019786 zgc:109986 (ENSOMEG00000019806) #24 BAZ1A (ENSOMEG00000019851) #25 cfl2 (ENSOMEG00000019883) #26 snx6 (ENSOMEG00000019916) #27 psma3 (ENSOMEG00000019957) #28 ENSOMEG00000019966 #29 ENSOMEG00000019997 #29 timm9 (ENSOMEG00000020017) #30 irf2bpl (ENSOMEG00000020036) #32 ENSOMEG00000020089 #31 DACT1 (ENSOMEG00000020108) #33 lgals3b (ENSOMEG00000000530) #15 fbxo34 (ENSOMEG00000020131) #14 Javanese ricefish MODERN SPECIES 14 TATDN3 (ENSOJAG00000014917) COQ8A (ENSOJAG00000014975) exd2 (ENSOJAG00000015074) numb (ENSOJAG00000015133) rdh14a (ENSOJAG00000015180) YIPF7 (ENSOJAG00000015184) foxg1a (ENSOJAG00000015190) #12 PRKD1 (ENSOJAG00000015216) #11 hikeshi (ENSOJAG00000015904) #16 ENSOJAG00000015909 #17 ap4s1 (ENSOJAG00000015956) #18 strn3 (ENSOJAG00000015993) #19 coch (ENSOJAG00000016617) scfd1 (ENSOJAG00000016699) #20 g2e3 (ENSOJAG00000017345) #21 ehd4 (ENSOJAG00000017357) #22 ENSOJAG00000017419 #23 zgc:109986 (ENSOJAG00000017424) #24 cfl2 (ENSOJAG00000017459) #26 snx6 (ENSOJAG00000017479) #27 psma3 (ENSOJAG00000017765) #28 arid4a (ENSOJAG00000017865) #29 ENSOJAG00000017907 ENSOJAG00000017930 #31 ENSOJAG00000017941 #33 lgals3b (ENSOJAG00000017991) #15 fbxo34 (ENSOJAG00000018033) #14 jmjd7 (ENSOJAG00000018049) #13 tbpl2 (ENSOJAG00000018061) atg14 (ENSOJAG00000018074) ENSOJAG00000018125 Oryzias_a ANCESTRAL SPECIES 11 ENSGT00390000008624 ENSGT00390000004599 ENSGT00940000158993 ENSGT00940000160181.i ENSGT00940000153168.C.a.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000156646.d #23 ENSGT00390000012799 #24 ENSGT00940000158135 #25 ENSGT00950000183000.c.b #26 ENSGT00940000154940 #27 ENSGT00550000074912 #28 ENSGT00940000156159 #29 ENSGT00940000160102 #30 ENSGT00940000162596 #32 ENSGT00940000165313 ENSGT00390000012397 #31 ENSGT00950000183181.B.a #33 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00940000159561.m Chinese medaka MODERN SPECIES 631 nrxn3a (ENSOSIG00000011783) ENSOSIG00000012073 adck1 (ENSOSIG00000012077) slirp (ENSOSIG00000012183) alkbh1 (ENSOSIG00000012185) osr1 (ENSOSIG00000012187) zgc:123321 (ENSOSIG00000012188) foxg1a (ENSOSIG00000012189) #12 PRKD1 (ENSOSIG00000012200) #11 hikeshi (ENSOSIG00000013285) #16 ENSOSIG00000013288 #17 ap4s1 (ENSOSIG00000013343) #18 strn3 (ENSOSIG00000013379) #19 coch (ENSOSIG00000017074) g2e3 (ENSOSIG00000017364) #21 ehd4 (ENSOSIG00000017520) #22 ENSOSIG00000017806 #23 zgc:109986 (ENSOSIG00000017928) #24 cfl2 (ENSOSIG00000017937) #26 snx6 (ENSOSIG00000017956) #27 psma3 (ENSOSIG00000018012) #28 ENSOSIG00000018060 #29 timm9 (ENSOSIG00000018069) #30 irf2bpl (ENSOSIG00000018078) #32 DACT1 (ENSOSIG00000018120) #33 lgals3b (ENSOSIG00000018121) #15 fbxo34 (ENSOSIG00000018122) #14 tbpl2 (ENSOSIG00000018132) atg14 (ENSOSIG00000018138) ENSOSIG00000018140 ENSOSIG00000018164 Japanese Medaka HdrR MODERN SPECIES 14 ENSORLG00000027646 ENSORLG00000029926 zgc:123321 (ENSORLG00000029255) foxg1a (ENSORLG00000010723) #12 ENSORLG00000010716 #11 ENSORLG00000027976 ENSORLG00000023329 hikeshi (ENSORLG00000010707) #16 hectd1 (ENSORLG00000010702) #17 ap4s1 (ENSORLG00000010658) #18 strn3 (ENSORLG00000010638) #19 coch (ENSORLG00000010591) ENSORLG00000022055 scfd1 (ENSORLG00000010536) #20 g2e3 (ENSORLG00000010482) #21 ehd4 (ENSORLG00000010433) #22 ENSORLG00000010405 #23 zgc:109986 (ENSORLG00000010399) #24 BAZ1A (ENSORLG00000010374) #25 cfl2 (ENSORLG00000010332) #26 snx6 (ENSORLG00000010318) #27 psma3 (ENSORLG00000010288) #28 ENSORLG00000010245 #29 ENSORLG00000027454 #29 ENSORLG00000021949 ENSORLG00000023322 #31 ENSORLG00000010158 #33 lgals3b (ENSORLG00000028430) #15 fbxo34 (ENSORLG00000023986) #14 tbpl2 (ENSORLG00000028018) jmjd7 (ENSORLG00000010130) #13 Ovalentaria_B ANCESTRAL SPECIES 24 ENSGT00940000166431 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A Pomacentridae ANCESTRAL SPECIES 78 ENSGT00940000166431 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051.h #7 Bicolor damselfish MODERN SPECIES 325 snx6 (ENSSPAG00000004652) #27 cfl2 (ENSSPAG00000004688) #26 BAZ1A (ENSSPAG00000004699) #25 zgc:109986 (ENSSPAG00000004813) #24 slc3a2b (ENSSPAG00000004822) #23 ENSSPAG00000004851 dhrs13a.2 (ENSSPAG00000004890) dhrs13a.1 (ENSSPAG00000004932) HEATR5A (ENSSPAG00000004991) hectd1 (ENSSPAG00000005095) #17 ap4s1 (ENSSPAG00000005192) #18 strn3 (ENSSPAG00000005208) #19 coch (ENSSPAG00000005245) scfd1 (ENSSPAG00000005313) #20 g2e3 (ENSSPAG00000005396) #21 ehd4 (ENSSPAG00000005490) #22 ENSSPAG00000005512 ENSSPAG00000005529 foxg1a (ENSSPAG00000005592) #12 Pomacentridae_A ANCESTRAL SPECIES 93 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b.b ENSGT00940000155599.i.a.b.a ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 Spiny chromis MODERN SPECIES 1150 coch (ENSAPOG00000004761) scfd1 (ENSAPOG00000004890) #20 g2e3 (ENSAPOG00000004932) #21 ehd4 (ENSAPOG00000004967) #22 ENSAPOG00000005186 foxg1a (ENSAPOG00000005212) #12 Amphiprion ANCESTRAL SPECIES 181 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745.p #8 ENSGT00950000183095.a.b.a.a #19 ENSGT00970000193421.B #18 ENSGT00940000156572 #17 ENSGT00390000006205.b ENSGT00390000004056 #16 ENSGT00940000155599.i.a.b.a ENSGT00940000155599.i.a.b.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d #23 Orange clownfish MODERN SPECIES 9 ENSAPEG00000012622 dhrs13a.1 (ENSAPEG00000012638) DHRS13 (ENSAPEG00000012661) hikeshi (ENSAPEG00000012684) #16 HEATR5A (ENSAPEG00000012740) hectd1 (ENSAPEG00000012851) #17 ap4s1 (ENSAPEG00000012966) #18 strn3 (ENSAPEG00000012987) #19 sptssa (ENSAPEG00000013049) #9 ENSAPEG00000013061 eapp (ENSAPEG00000013072) #10 coch (ENSAPEG00000013099) ENSAPEG00000013135 scfd1 (ENSAPEG00000013158) #20 g2e3 (ENSAPEG00000013279) #21 ehd4 (ENSAPEG00000013326) #22 ENSAPEG00000013356 ENSAPEG00000013375 ENSAPEG00000013439 ENSAPEG00000013566 foxg1a (ENSAPEG00000013581) #12 ENSAPEG00000013604 ENSAPEG00000013621 ENSAPEG00000013638 PRKD1 (ENSAPEG00000013662) #11 ENSAPEG00000013707 ENSAPEG00000013738 eapp (ENSAPEG00000013780) #10 ENSAPEG00000013813 sptssa (ENSAPEG00000013841) #9 egln3 (ENSAPEG00000013864) #8 Clown anemonefish MODERN SPECIES 469 ehd4 (ENSAOCG00000018965) #22 Cichlidae ANCESTRAL SPECIES 37 ENSGT00940000161060 ENSGT00940000155554 ENSGT00390000015102.a.b ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A Pseudocrenilabrinae ANCESTRAL SPECIES 8 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000157038.a.b.u.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b.c ##35 Pseudocrenilabrinae_A ANCESTRAL SPECIES 6 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000157038.a.b.u.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000178522 ENSGT00940000153431.a.v.b Haplochromini ANCESTRAL SPECIES 42 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000157038.a.b.u.b ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000178522 ENSGT00940000153431.a.v.b Burton s mouthbrooder MODERN SPECIES 569 ENSHBUG00000016632 #17 ap4s1 (ENSHBUG00000000489) #18 strn3 (ENSHBUG00000000483) #19 coch (ENSHBUG00000016503) scfd1 (ENSHBUG00000016430) #20 g2e3 (ENSHBUG00000016168) #21 ehd4 (ENSHBUG00000016153) #22 ENSHBUG00000016091 ENSHBUG00000015705 foxg1a (ENSHBUG00000015682) #12 PRKD1 (ENSHBUG00000015648) #11 eapp (ENSHBUG00000015496) #10 sptssa (ENSHBUG00000015484) #9 egln3 (ENSHBUG00000015449) #8 Haplochromini_A ANCESTRAL SPECIES 44 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000178522 ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b.c ##35 P. nyererei MODERN SPECIES 324 hikeshi (ENSPNYG00000013322) #16 HEATR5A (ENSPNYG00000013359) hectd1 (ENSPNYG00000013578) #17 ap4s1 (ENSPNYG00000013670) #18 strn3 (ENSPNYG00000013710) #19 coch (ENSPNYG00000013761) scfd1 (ENSPNYG00000013788) #20 g2e3 (ENSPNYG00000013844) #21 ehd4 (ENSPNYG00000013916) #22 ENSPNYG00000013995 foxg1a (ENSPNYG00000014291) #12 PRKD1 (ENSPNYG00000014311) #11 eapp (ENSPNYG00000014361) #10 sptssa (ENSPNYG00000014367) #9 egln3 (ENSPNYG00000014374) #8 NPAS3 (ENSPNYG00000014398) #7 ENSPNYG00000014421 ENSPNYG00000014444 ENSPNYG00000014476 ARHGAP5 (ENSPNYG00000014497) nubpl (ENSPNYG00000014525) dtd2 (ENSPNYG00000014554) ENSPNYG00000014580 DTD2 (ENSPNYG00000014598) Haplochromini_B ANCESTRAL SPECIES 119 ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 Zebra mbuna DUPLICATION Zebra mbuna MODERN SPECIES 142 HEATR5A (ENSMZEG00005004107) hectd1 (ENSMZEG00005004328) #17 ap4s1 (ENSMZEG00005004423) #18 strn3 (ENSMZEG00005004442) #19 coch (ENSMZEG00005004465) scfd1 (ENSMZEG00005004486) #20 g2e3 (ENSMZEG00005004527) #21 ehd4 (ENSMZEG00005004542) #22 Zebra mbuna MODERN SPECIES 166 ehd4 (ENSMZEG00005024022) #22 ENSMZEG00005024015 ENSMZEG00005024003 foxg1a (ENSMZEG00005024002) #12 ENSMZEG00005024000 Eastern happy MODERN SPECIES 5 gemin4 (ENSACLG00000016073) TLCD3A (ENSACLG00000016090) usp2a (ENSACLG00000016110) ENSACLG00000016164 tbcela (ENSACLG00000016175) ENSACLG00000016329 ENSACLG00000016344 hikeshi (ENSACLG00000016412) #16 HEATR5A (ENSACLG00000016427) hectd1 (ENSACLG00000016633) #17 ap4s1 (ENSACLG00000016857) #18 strn3 (ENSACLG00000016888) #19 coch (ENSACLG00000016965) scfd1 (ENSACLG00000017070) #20 g2e3 (ENSACLG00000017147) #21 ehd4 (ENSACLG00000017182) #22 ENSACLG00000017296 foxg1a (ENSACLG00000017908) #12 ENSACLG00000017960 ENSACLG00000017974 CLCN2 (ENSACLG00000017984) ENSACLG00000018024 usf1l (ENSACLG00000018193) gkup (ENSACLG00000018216) ubash3bb (ENSACLG00000018288) ENSACLG00000018354 hmbsa (ENSACLG00000018367) arcn1b (ENSACLG00000018442) PHLDB1 (ENSACLG00000018497) ENSACLG00000018565 ENSACLG00000018589 Lyretail cichlid MODERN SPECIES 299 gabrr2a (ENSNBRG00000022229) syne3 (ENSNBRG00000022250) ENSNBRG00000022281 dicer1 (ENSNBRG00000022306) ENSNBRG00000022352 galcb (ENSNBRG00000022375) hikeshi (ENSNBRG00000022423) #16 HEATR5A (ENSNBRG00000022437) ENSNBRG00000022477 #17 ap4s1 (ENSNBRG00000022483) #18 strn3 (ENSNBRG00000022491) #19 coch (ENSNBRG00000022518) scfd1 (ENSNBRG00000022555) #20 ENSNBRG00000022568 g2e3 (ENSNBRG00000022590) #21 ehd4 (ENSNBRG00000022623) #22 ENSNBRG00000022636 ENSNBRG00000022651 foxg1a (ENSNBRG00000022682) #12 PRKD1 (ENSNBRG00000022691) #11 eapp (ENSNBRG00000022713) #10 sptssa (ENSNBRG00000022727) #9 egln3 (ENSNBRG00000022731) #8 NPAS3 (ENSNBRG00000022746) #7 ENSNBRG00000022764 ENSNBRG00000022821 ARHGAP5 (ENSNBRG00000022830) nubpl (ENSNBRG00000022842) dtd2 (ENSNBRG00000022855) ENSNBRG00000022862 ENSNBRG00000022875 ##35 Nile tilapia MODERN SPECIES 10 ENSONIG00000041208 ak7b (ENSONIG00000001719) ENSONIG00000042145 zgc:109986 (ENSONIG00000001727) #24 ENSONIG00000030475 ENSONIG00000032516 slc3a2b (ENSONIG00000001729) #23 hikeshi (ENSONIG00000020832) #16 HEATR5A (ENSONIG00000001918) hectd1 (ENSONIG00000001899) #17 ap4s1 (ENSONIG00000001896) #18 strn3 (ENSONIG00000001884) #19 coch (ENSONIG00000001879) scfd1 (ENSONIG00000001862) #20 g2e3 (ENSONIG00000001857) #21 ehd4 (ENSONIG00000038089) #22 ENSONIG00000001828 ENSONIG00000038497 foxg1a (ENSONIG00000029950) #12 PRKD1 (ENSONIG00000001814) #11 eapp (ENSONIG00000001809) #10 sptssa (ENSONIG00000036220) #9 egln3 (ENSONIG00000035400) #8 NPAS3 (ENSONIG00000037265) #7 AKAP6 (ENSONIG00000001789) ARHGAP5 (ENSONIG00000001785) nubpl (ENSONIG00000001779) ENSONIG00000027478 dtd2 (ENSONIG00000042067) ENSONIG00000041880 ENSONIG00000001775 ##35 Midas cichlid DUPLICATION Midas cichlid MODERN SPECIES 1450 g2e3 (ENSACIG00000022389) #21 ENSACIG00000022380 #22 Midas cichlid MODERN SPECIES 1289 ehd4 (ENSACIG00000005591) #22 ENSACIG00000005339 foxg1a (ENSACIG00000005304) #12 PRKD1 (ENSACIG00000005253) #11 ENSACIG00000005231 eapp (ENSACIG00000005205) #10 sptssa (ENSACIG00000005195) #9 egln3 (ENSACIG00000005177) #8 NPAS3 (ENSACIG00000005148) #7 ENSACIG00000005096 ENSACIG00000005080 Percomorphaceae_C ANCESTRAL SPECIES 12 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A Percomorphaceae_D ANCESTRAL SPECIES 10 ENSGT00940000166431 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A ENSGT00390000018691.c Anabantaria ANCESTRAL SPECIES 10 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000153804.B ENSGT00940000168627 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT01060000248778 ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A ENSGT00390000018691.c Anabantoidei ANCESTRAL SPECIES 9 ENSGT00940000158135 #25 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000153804.B ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT01030000234583.a.a.c.b.a.a.b.b ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00530000069038.a.b ##35 ENSGT01060000248778 ENSGT00940000153168.A Climbing perch MODERN SPECIES 13 ENSATEG00000014569 #23 ENSATEG00000014580 ENSATEG00000014605 ENSATEG00000014622 ENSATEG00000014717 ENSATEG00000014913 #16 HEATR5A (ENSATEG00000014961) ENSATEG00000015068 hectd1 (ENSATEG00000015098) #17 ap4s1 (ENSATEG00000015227) #18 strn3 (ENSATEG00000015245) #19 ENSATEG00000015368 coch (ENSATEG00000015389) scfd1 (ENSATEG00000015471) #20 g2e3 (ENSATEG00000015553) #21 ehd4 (ENSATEG00000015573) #22 ENSATEG00000015643 foxg1a (ENSATEG00000016130) #12 ENSATEG00000016142 ENSATEG00000027849 #11 ENSATEG00000025189 #11 eapp (ENSATEG00000016262) #10 sptssa (ENSATEG00000016285) #9 egln3 (ENSATEG00000016315) #8 ENSATEG00000016407 ENSATEG00000016441 ENSATEG00000016454 ENSATEG00000016527 ARHGAP5 (ENSATEG00000016540) NUBPL (ENSATEG00000016572) dtd2 (ENSATEG00000016615) Siamese fighting fish MODERN SPECIES 12 BAZ1A (ENSBSLG00000010664) #25 zgc:109986 (ENSBSLG00000010904) #24 ENSBSLG00000010948 ENSBSLG00000011458 slc3a2b (ENSBSLG00000011462) #23 dhrs13a.2 (ENSBSLG00000011472) DHRS13 (ENSBSLG00000011482) hikeshi (ENSBSLG00000011962) #16 ENSBSLG00000012558 hectd1 (ENSBSLG00000012567) #17 ap4s1 (ENSBSLG00000005279) #18 strn3 (ENSBSLG00000005421) #19 coch (ENSBSLG00000005967) scfd1 (ENSBSLG00000005976) #20 g2e3 (ENSBSLG00000006025) #21 ehd4 (ENSBSLG00000006613) #22 foxg1a (ENSBSLG00000007331) #12 ENSBSLG00000007349 #11 eapp (ENSBSLG00000007589) #10 sptssa (ENSBSLG00000007592) #9 ENSBSLG00000007595 egln3 (ENSBSLG00000007597) #8 NPAS3 (ENSBSLG00000007614) #7 ENSBSLG00000007622 ENSBSLG00000007626 ENSBSLG00000007633 brf1a (ENSBSLG00000007640) BTBD6 (ENSBSLG00000007657) ENSBSLG00000007659 ENSBSLG00000007717 ENSBSLG00000007836 Zig-zag eel MODERN SPECIES 14 ENSMAMG00000000008 ENSMAMG00000027251 ENSMAMG00000027189 ENSMAMG00000000010 ENSMAMG00000025908 ENSMAMG00000026657 ENSMAMG00000000015 hectd1 (ENSMAMG00000000016) #17 ap4s1 (ENSMAMG00000000017) #18 strn3 (ENSMAMG00000000018) #19 g2e3 (ENSMAMG00000000019) #21 ENSMAMG00000000021 #20 coch (ENSMAMG00000000022) ENSMAMG00000028251 ehd4 (ENSMAMG00000000024) #22 ENSMAMG00000000027 #12 ENSMAMG00000000028 #11 eapp (ENSMAMG00000000029) #10 sptssa (ENSMAMG00000000030) #9 egln3 (ENSMAMG00000000031) #8 ENSMAMG00000026367 NPAS3 (ENSMAMG00000000032) #7 ENSMAMG00000000033 ENSMAMG00000000034 ARHGAP5 (ENSMAMG00000000035) NUBPL (ENSMAMG00000000036) dtd2 (ENSMAMG00000000037) ENSMAMG00000000038 ENSMAMG00000000039 ##35 ENSMAMG00000028066 Carangaria ANCESTRAL SPECIES 10 ENSGT00940000166431 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A ENSGT00390000018691.c Carangaria_A ANCESTRAL SPECIES 98 ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 Seriola ANCESTRAL SPECIES 102 ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00810000125473.B ENSGT00940000158051 #7 ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00390000017666 ENSGT00940000157417 ENSGT00940000154782.d ENSGT01030000234930 Greater amberjack MODERN SPECIES 163 ENSSDUG00000011490 ENSSDUG00000011482 dhrs13a.2 (ENSSDUG00000011468) dhrs13a.1 (ENSSDUG00000011461) hikeshi (ENSSDUG00000011450) #16 HEATR5A (ENSSDUG00000011377) hectd1 (ENSSDUG00000011288) #17 ap4s1 (ENSSDUG00000011269) #18 strn3 (ENSSDUG00000011224) #19 coch (ENSSDUG00000011195) scfd1 (ENSSDUG00000011167) #20 ENSSDUG00000011152 g2e3 (ENSSDUG00000010993) #21 ENSSDUG00000010967 ehd4 (ENSSDUG00000010947) #22 ENSSDUG00000010913 ENSSDUG00000010788 foxg1a (ENSSDUG00000010776) #12 PRKD1 (ENSSDUG00000010737) #11 ENSSDUG00000010718 eapp (ENSSDUG00000010689) #10 sptssa (ENSSDUG00000010684) #9 egln3 (ENSSDUG00000010655) #8 ENSSDUG00000010615 ENSSDUG00000010604 ENSSDUG00000010595 NPAS3 (ENSSDUG00000010568) #7 ENSSDUG00000010558 ARHGAP5 (ENSSDUG00000010523) nubpl (ENSSDUG00000010495) Yellowtail amberjack MODERN SPECIES 3073 ENSSLDG00000021042 g2e3 (ENSSLDG00000021004) #21 ehd4 (ENSSLDG00000020986) #22 ENSSLDG00000020960 ENSSLDG00000020847 foxg1a (ENSSLDG00000020830) #12 Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 534 hectd1 (ENSLCAG00010011150) #17 ENSLCAG00010011174 hikeshi (ENSLCAG00010011176) #16 DHRS13 (ENSLCAG00010011180) dhrs13a.1 (ENSLCAG00010011187) dhrs13a.2 (ENSLCAG00010011203) coch (ENSLCAG00010011248) scfd1 (ENSLCAG00010011331) #20 ENSLCAG00010011586 g2e3 (ENSLCAG00010011593) #21 ehd4 (ENSLCAG00010011604) #22 ENSLCAG00010011611 SPTBN5 (ENSLCAG00010011625) Barramundi perch MODERN SPECIES 1141 ehd4 (ENSLCAG00010017504) #22 Pleuronectoidei ANCESTRAL SPECIES 5 ENSGT00940000158135 #25 ENSGT00940000166431 ENSGT00390000012799 #24 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT01060000248778 ENSGT00940000153168.A ENSGT00390000018691.c ENSGT00940000159673 Turbot MODERN SPECIES 8 ENSSMAG00000002190 jmjd7 (ENSSMAG00000002155) #13 fbxo34 (ENSSMAG00000002152) #14 lgals3b (ENSSMAG00000002149) #15 dact1 (ENSSMAG00000033904) #33 irf2bpl (ENSSMAG00000012255) #32 timm9 (ENSSMAG00000035879) #30 arid4a (ENSSMAG00000012268) #29 psma3 (ENSSMAG00000012319) #28 ENSSMAG00000030491 snx6 (ENSSMAG00000012367) #27 cfl2 (ENSSMAG00000012418) #26 BAZ1A (ENSSMAG00000012566) #25 zgc:109986 (ENSSMAG00000012609) #24 ENSSMAG00000002958 #21 ehd4 (ENSSMAG00000002935) #22 ENSSMAG00000026503 foxg1a (ENSSMAG00000022260) #12 ENSSMAG00000030108 #11 ENSSMAG00000035441 ENSSMAG00000026450 eapp (ENSSMAG00000002811) #10 SPTSSA (ENSSMAG00000002830) #9 egln3 (ENSSMAG00000002860) #8 ENSSMAG00000002873 #23 ENSSMAG00000034079 NPAS3 (ENSSMAG00000034084) #7 ENSSMAG00000018689 ENSSMAG00000000960 ARHGAP5 (ENSSMAG00000000757) NUBPL (ENSSMAG00000000795) Tongue sole MODERN SPECIES ENSCSEG00000011854 #25 ENSCSEG00000011841 zgc:109986 (ENSCSEG00000011830) #24 slc3a2b (ENSCSEG00000011824) #23 ENSCSEG00000011729 dhrs13a.2 (ENSCSEG00000011659) hikeshi (ENSCSEG00000011654) #16 hikeshi (ENSCSEG00000011650) #16 HEATR5A (ENSCSEG00000011564) hectd1 (ENSCSEG00000011469) #17 ap4s1 (ENSCSEG00000011445) #18 strn3 (ENSCSEG00000011317) #19 g2e3 (ENSCSEG00000011272) #21 scfd1 (ENSCSEG00000011230) #20 coch (ENSCSEG00000011217) ehd4 (ENSCSEG00000011195) #22 ENSCSEG00000011139 ENSCSEG00000011116 foxg1a (ENSCSEG00000011113) #12 ENSCSEG00000011106 PRKD1 (ENSCSEG00000011076) #11 eapp (ENSCSEG00000011062) #10 sptssa (ENSCSEG00000011058) #9 DCTN1 (ENSCSEG00000010866) ENSCSEG00000010747 ENSCSEG00000010730 ENSCSEG00000010722 SLC39A8 (ENSCSEG00000010711) manba (ENSCSEG00000010694) ube2d3 (ENSCSEG00000010225) ENSCSEG00000010183 Eupercaria ANCESTRAL SPECIES 9 ENSGT00390000013207 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A Tetraodontidae ANCESTRAL SPECIES 3 ENSGT00940000165169.b.a #15 ENSGT00530000064222.b #14 ENSGT00900000141196 #13 ENSGT00940000159561.m ENSGT00390000011854 ENSGT00940000163520.A.a.a.a.a.a.a.g.b ENSGT00940000164564.e.a ENSGT00940000155599.i.b ENSGT00390000004056 #16 ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627 ENSGT00550000074845 #20 ENSGT00940000159386 ENSGT00940000158601 #22 ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000158836.a.a ENSGT00940000159673 ENSGT00390000018691.c ENSGT00940000153168.A ENSGT00390000006996 ENSGT01030000234620.a.b.a Fugu MODERN SPECIES 11 trf3 (ENSTRUG00000009283) atg14 (ENSTRUG00000023016) ENSTRUG00000028990 ENSTRUG00000028870 lrrc57 (ENSTRUG00000010341) ENSTRUG00000010421 haus2 (ENSTRUG00000023669) dhrs13a.2 (ENSTRUG00000010572) hikeshi (ENSTRUG00000025477) #16 hectd1 (ENSTRUG00000011055) #17 ap4s1 (ENSTRUG00000011227) #18 strn3 (ENSTRUG00000011310) #19 ENSTRUG00000011636 scfd1 (ENSTRUG00000011884) #20 coch (ENSTRUG00000027600) ehd4 (ENSTRUG00000022398) #22 foxg1a (ENSTRUG00000012582) #12 PRKD1 (ENSTRUG00000002543) #11 eapp (ENSTRUG00000031136) #10 sptssa (ENSTRUG00000027104) #9 egln3 (ENSTRUG00000024714) #8 NPAS3 (ENSTRUG00000004071) #7 AKAP6 (ENSTRUG00000023905) SGPP1 (ENSTRUG00000025016) SYT16 (ENSTRUG00000026371) snapc1b (ENSTRUG00000003344) yipf6 (ENSTRUG00000003721) ENSTRUG00000029938 ppp2r5eb (ENSTRUG00000003840) KCNH5 (ENSTRUG00000004743) gphb5 (ENSTRUG00000005808) Tetraodon MODERN SPECIES 26 ENSTNIG00000004860 smarca4a (ENSTNIG00000004859) ENSTNIG00000004858 ENSTNIG00000003800 sf3b3 (ENSTNIG00000004857) ENSTNIG00000004856 DBX1 (ENSTNIG00000004855) ckap5 (ENSTNIG00000004854) cstpp1 (ENSTNIG00000004853) mapk8ip1a (ENSTNIG00000004852) cry2 (ENSTNIG00000004851) cry2 (ENSTNIG00000004850) trhr2 (ENSTNIG00000004849) ENSTNIG00000004848 coch (ENSTNIG00000004843) ehd4 (ENSTNIG00000004842) #22 foxg1a (ENSTNIG00000004841) #12 egr2b (ENSTNIG00000004834) adoa (ENSTNIG00000004833) ENSTNIG00000004832 egr2b (ENSTNIG00000004831) PTGR3 (ENSTNIG00000004830) ENSTNIG00000004829 ENSTNIG00000004828 ENSTNIG00000004827 atp1b2a (ENSTNIG00000004825) ENSTNIG00000004824 ENSTNIG00000004812 ENSTNIG00000004811 cdc42se1 (ENSTNIG00000000249) cdc42se1 (ENSTNIG00000001155) Eupecaria_A ANCESTRAL SPECIES 10 ENSGT00390000013207 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00940000166226 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 Ballan wrasse MODERN SPECIES 569 ENSLBEG00000019055 ENSLBEG00000019070 dhrs13a.2 (ENSLBEG00000019100) dhrs13a.1 (ENSLBEG00000019189) hikeshi (ENSLBEG00000019476) #16 HEATR5A (ENSLBEG00000019543) hectd1 (ENSLBEG00000019658) #17 ENSLBEG00000019764 #17 ap4s1 (ENSLBEG00000019788) #18 strn3 (ENSLBEG00000019840) #19 ENSLBEG00000019921 coch (ENSLBEG00000019947) ENSLBEG00000019993 scfd1 (ENSLBEG00000020023) #20 g2e3 (ENSLBEG00000020092) #21 ehd4 (ENSLBEG00000020127) #22 ENSLBEG00000020156 Eupecaria_B ANCESTRAL SPECIES 11 ENSGT00390000004927 ENSGT00390000013207 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627 ENSGT00940000159386 ENSGT00550000074845 #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00940000166226 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 Eupecaria_C ANCESTRAL SPECIES 8 ENSGT00940000157393 ENSGT00390000004927 ENSGT00940000155369.A.d.a ENSGT00940000156646.d #23 ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627.e.b ENSGT00940000159386 ENSGT00550000074845.g #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A ENSGT00390000018691.c ENSGT00940000159673 Eupercaria_incertae_sedis ANCESTRAL SPECIES 25 ENSGT00940000155369.A.d.a ENSGT00940000156646.d #23 ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000168627.e.b ENSGT00940000159386 ENSGT00550000074845.g #20 ENSGT00950000182865.b.a.a #21 ENSGT00940000158601 #22 ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00810000125473.B ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT01060000248778 ENSGT00940000180386 ENSGT00530000069038.a.b ##35 ENSGT00940000153168.A European seabass MODERN SPECIES 160 ENSDLAG00005028989 ehd4 (ENSDLAG00005006412) #22 ENSDLAG00005034471 #12 ENSDLAG00005016209 ENSDLAG00005032190 ENSDLAG00005029751 #11 ENSDLAG00005029704 Large yellow croaker MODERN SPECIES 477 ENSLCRG00005014282 ENSLCRG00005014269 ENSLCRG00005014267 ENSLCRG00005014264 ENSLCRG00005014260 ENSLCRG00005013904 GPR135 (ENSLCRG00005013893) jkamp (ENSLCRG00005013891) fam241a (ENSLCRG00005013890) lrit3b (ENSLCRG00005013888) enpep (ENSLCRG00005013775) rrh (ENSLCRG00005013770) ENSLCRG00005013769 dhrs13a.1 (ENSLCRG00005013768) g2e3 (ENSLCRG00005013765) #21 ehd4 (ENSLCRG00005013724) #22 foxg1a (ENSLCRG00005013720) #12 PRKD1 (ENSLCRG00005010588) #11 eapp (ENSLCRG00005010570) #10 sptssa (ENSLCRG00005010569) #9 egln3 (ENSLCRG00005010568) #8 NPAS3 (ENSLCRG00005010444) #7 ENSLCRG00005010431 AKAP6 (ENSLCRG00005010425) ARHGAP5 (ENSLCRG00005010422) nubpl (ENSLCRG00005010148) dhrs13a.2 (ENSLCRG00005010147) DNAL1 (ENSLCRG00005010121) ENSLCRG00005010119 SGPP1 (ENSLCRG00005010118) ENSLCRG00005010117 Gilthead seabream MODERN SPECIES 7 ap4s1 (ENSSAUG00010005736) #18 hectd1 (ENSSAUG00010005756) #17 HEATR5A (ENSSAUG00010005864) hikeshi (ENSSAUG00010008685) #16 ENSSAUG00010008687 dhrs13a.2 (ENSSAUG00010008688) ENSSAUG00010008692 ENSSAUG00010008693 ENSSAUG00010008694 coch (ENSSAUG00010008696) ENSSAUG00010008699 coch (ENSSAUG00010008704) ENSSAUG00010008708 scfd1 (ENSSAUG00010008727) #20 g2e3 (ENSSAUG00010010170) #21 ehd4 (ENSSAUG00010010174) #22 foxg1a (ENSSAUG00010010180) #12 PRKD1 (ENSSAUG00010010251) #11 ENSSAUG00010013363 ENSSAUG00010013366 eapp (ENSSAUG00010013368) #10 sptssa (ENSSAUG00010013370) #9 ENSSAUG00010013388 ENSSAUG00010013394 ENSSAUG00010013395 ENSSAUG00010013396 egln3 (ENSSAUG00010013399) #8 NPAS3 (ENSSAUG00010013408) #7 ENSSAUG00010013449 ENSSAUG00010013451 ENSSAUG00010013453 Perciformes ANCESTRAL SPECIES 12 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 ENSGT00940000166226 ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000154553.a.b ENSGT00950000183193.B ENSGT00940000153431.a.v.a ENSGT00940000153431.a.v.b ENSGT01060000248778 Cottioidei ANCESTRAL SPECIES 133 ENSGT00940000158601 #22 ENSGT00940000161549.a.a Lumpfish MODERN SPECIES 14 tpgs1 (ENSCLMG00005017299) ISYNA1 (ENSCLMG00005017301) pdcd10a (ENSCLMG00005017315) si:dkey-56i24.1 (ENSCLMG00005017340) SLITRK3 (ENSCLMG00005017341) NRDC (ENSCLMG00005017406) ENSCLMG00005020861 ENSCLMG00005020862 ENSCLMG00005020865 odf3l2a (ENSCLMG00005020867) crlf1a (ENSCLMG00005020870) keap1a (ENSCLMG00005020895) SSBP4 (ENSCLMG00005020898) ENSCLMG00005020900 ENSCLMG00005020901 ehd4 (ENSCLMG00005020902) #22 KLHL10 (ENSCLMG00005020919) ENSCLMG00005020920 foxg1a (ENSCLMG00005020922) #12 PRKD1 (ENSCLMG00005020924) #11 ENSCLMG00005021006 eapp (ENSCLMG00005021007) #10 sptssa (ENSCLMG00005021008) #9 ENSCLMG00005021009 egln3 (ENSCLMG00005021010) #8 ENSCLMG00005021012 ENSCLMG00005021022 ARHGAP5 (ENSCLMG00005021023) nubpl (ENSCLMG00005021024) dtd2 (ENSCLMG00005002797) ENSCLMG00005002808 Stickleback MODERN SPECIES 262 coch (ENSGACG00000001279) ehd4 (ENSGACG00000001282) #22 ENSGACG00000001287 Perciformes_a ANCESTRAL SPECIES 48 ENSGT00390000004927 ENSGT00390000013207 ENSGT00940000156646.d #23 ENSGT00940000155369.A.d.a ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 #16 ENSGT00390000006205.b ENSGT00940000156572 #17 ENSGT00970000193421.B #18 ENSGT00950000183095.a.b.a.a #19 ENSGT00940000153804.B ENSGT00950000182865.b.a.a #21 ENSGT00550000074845 #20 ENSGT00940000159386 ENSGT00940000158601 #22 ENSGT00940000161549.a.a ENSGT00940000160678.a #12 ENSGT00950000183024.a.b.a #11 ENSGT00390000001332 #10 ENSGT00390000002766.b.b #9 ENSGT00940000158745 #8 ENSGT00940000158051 #7 Pike perch MODERN SPECIES 249 g2e3 (ENSSLUG00000017282) #21 scfd1 (ENSSLUG00000014687) #20 coch (ENSSLUG00000014574) ENSSLUG00000014504 ENSSLUG00000014483 ehd4 (ENSSLUG00000014429) #22 ENSSLUG00000014288 foxg1a (ENSSLUG00000014257) #12 Channel bull blenny MODERN SPECIES 14 tyro3 (ENSCGOG00000020834) lrrc57 (ENSCGOG00000020832) slc3a2b (ENSCGOG00000020793) #23 MDGA2 (ENSCGOG00000020243) dhrs13a.2 (ENSCGOG00000020222) dhrs13a.1 (ENSCGOG00000020129) hikeshi (ENSCGOG00000020116) #16 HEATR5A (ENSCGOG00000018946) hectd1 (ENSCGOG00000018233) #17 ap4s1 (ENSCGOG00000018201) #18 strn3 (ENSCGOG00000017733) #19 ccdc65 (ENSCGOG00000017717) g2e3 (ENSCGOG00000017712) #21 scfd1 (ENSCGOG00000016938) #20 coch (ENSCGOG00000016770) ehd4 (ENSCGOG00000015288) #22 ENSCGOG00000015193 PRKD1 (ENSCGOG00000013397) #11 eapp (ENSCGOG00000013361) #10 sptssa (ENSCGOG00000013360) #9 egln3 (ENSCGOG00000013359) #8 NPAS3 (ENSCGOG00000013332) #7 pygl (ENSCGOG00000022761) ENSCGOG00000022727 atl1 (ENSCGOG00000022711) ENSCGOG00000022710 sos2 (ENSCGOG00000022451) cdkn3 (ENSCGOG00000022433) cnih1 (ENSCGOG00000022424) gmfb (ENSCGOG00000022384) lgals3a (ENSCGOG00000022382) Tiger tail seahorse MODERN SPECIES 43 ENSHCOG00000021183 #23 ENSHCOG00000021186 ENSHCOG00000021188 hikeshi (ENSHCOG00000021190) #16 hikeshi (ENSHCOG00000021191) #16 ENSHCOG00000021193 #17 ENSHCOG00000021195 ENSHCOG00000021196 #17 ENSHCOG00000021198 #17 ap4s1 (ENSHCOG00000021199) #18 strn3 (ENSHCOG00000021201) #19 ENSHCOG00000021203 #19 coch (ENSHCOG00000021205) scfd1 (ENSHCOG00000021210) #20 g2e3 (ENSHCOG00000021216) #21 ehd4 (ENSHCOG00000021219) #22 foxg1a (ENSHCOG00000021221) #12 ENSHCOG00000021223 #11 eapp (ENSHCOG00000021078) #10 sptssa (ENSHCOG00000021055) #9 NPAS3 (ENSHCOG00000021038) #7 AKAP6 (ENSHCOG00000020979) ARHGAP5 (ENSHCOG00000020862) ENSHCOG00000020841 SYT16 (ENSHCOG00000020828) yipf6 (ENSHCOG00000020816) ENSHCOG00000020810 ##35 dtd2 (ENSHCOG00000020804) nubpl (ENSHCOG00000000564) SGPP1 (ENSHCOG00000020754) wdr89 (ENSHCOG00000000560) Pinecone sodierfish MODERN SPECIES 14 egln3 (ENSMMDG00005007606) #8 ENSMMDG00005007604 ENSMMDG00005007603 ENSMMDG00005007601 ENSMMDG00005007598 ENSMMDG00005007596 ENSMMDG00005007592 ENSMMDG00005007591 ENSMMDG00005007588 ENSMMDG00005007586 coch (ENSMMDG00005013041) scfd1 (ENSMMDG00005011578) #20 g2e3 (ENSMMDG00005011443) #21 ENSMMDG00005011431 ENSMMDG00005011424 ehd4 (ENSMMDG00005011421) #22 ENSMMDG00005011411 foxg1a (ENSMMDG00005011409) #12 PRKD1 (ENSMMDG00005010830) #11 eapp (ENSMMDG00005010804) #10 ENSMMDG00005010801 ENSMMDG00005010798 ENSMMDG00005010797 ENSMMDG00005010795 ENSMMDG00005010794 ENSMMDG00005010792 ENSMMDG00005010791 ENSMMDG00005010789 ENSMMDG00005010787 strn3 (ENSMMDG00005010641) #19 hectd1 (ENSMMDG00005010633) #17 Cod MODERN SPECIES 18 ENSGMOG00000023984 tyro3 (ENSGMOG00000013831) ENSGMOG00000006518 ENSGMOG00000006507 ENSGMOG00000031559 ENSGMOG00000014294 #23 ENSGMOG00000006936 ENSGMOG00000022996 #16 HEATR5A (ENSGMOG00000033228) hectd1 (ENSGMOG00000006063) #17 ap4s1 (ENSGMOG00000006133) #18 strn3 (ENSGMOG00000006143) #19 g2e3 (ENSGMOG00000006176) #21 ENSGMOG00000006205 #20 coch (ENSGMOG00000001380) ENSGMOG00000014910 #22 ENSGMOG00000034342 #11 ENSGMOG00000024480 #10 ENSGMOG00000023565 #9 ENSGMOG00000028819 ENSGMOG00000030535 ENSGMOG00000036276 ENSGMOG00000019814 ENSGMOG00000037191 ENSGMOG00000036545 ENSGMOG00000030538 ENSGMOG00000025584 ENSGMOG00000029142 ENSGMOG00000036234 ENSGMOG00000027819 ENSGMOG00000036081