Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000161349 #7	ENSGT00390000006890 #8	ENSGT00940000157377 #9	ENSGT00550000075078 #10	ENSGT00940000160415 #11	ENSGT00390000005900 #12	ENSGT00950000182881.a.a.b #13	ENSGT00950000182910.b #14	ENSGT01050000244905.B #15	ENSGT01080000257420.C.b.b.b.c #17	ENSGT00390000016401 #18	ENSGT00390000014272 #19	ENSGT00940000156363 #20	ENSGT00940000154971 #21	ENSGT00510000049735	ENSGT00940000158799 #22	ENSGT00940000153173.b.b #23	ENSGT00940000157202 #24	ENSGT00940000157943.b #25	ENSGT00940000155338 #26	ENSGT00510000048410 #27	ENSGT00390000007911 #28	ENSGT00940000154881 #29	ENSGT00940000159275 #30	ENSGT00940000154664 #31	ENSGT00390000012959.a #32	ENSGT00940000156331 #33	ENSGT00940000153814.b #34	ENSGT00940000156395 #35	ENSGT00390000014792 #36	ENSGT00390000015789.c.a.b ##37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000006890 #8	ENSGT00940000157377 #9	ENSGT00550000075078 #10	ENSGT00940000160415 #11	ENSGT00390000005900 #12	ENSGT00950000182881.a.a.b #13	ENSGT00950000182910.b #14	ENSGT01050000244905.B #15	ENSGT01080000257420.C.b.b.b.d #16	ENSGT01080000257420.C.b.b.b.c #17	ENSGT00390000016401 #18	ENSGT00390000014272 #19	ENSGT00940000156363 #20	ENSGT00940000154971 #21	ENSGT00510000049735	ENSGT00940000158799 #22	ENSGT00940000153173.b.b #23	ENSGT00940000157202 #24	ENSGT00940000157943.b #25	ENSGT00940000155338 #26	ENSGT00510000048410 #27	ENSGT00390000007911 #28	ENSGT00940000154881 #29	ENSGT00940000159275 #30	ENSGT00940000154664 #31	ENSGT00390000012959.a #32	ENSGT00940000156331 #33	ENSGT00940000153814.b #34	ENSGT00940000156395 #35	ENSGT00390000014792 #36	ENSGT00390000015789.c.a.b ##37
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00390000006890 #8	ENSGT00940000157377 #9	ENSGT00550000075078 #10	ENSGT00940000160415 #11	ENSGT00390000005900 #12	ENSGT00950000182881.a.a.b #13	ENSGT00950000182910.b #14	ENSGT01050000244905.B #15	ENSGT01080000257420.C.b.b.b.d #16	ENSGT01080000257420.C.b.b.b.c #17	ENSGT00390000016401 #18	ENSGT00390000014272 #19	ENSGT00940000156363 #20	ENSGT00940000154971 #21	ENSGT00510000049735	ENSGT00940000158799 #22	ENSGT00940000153173.b.b #23	ENSGT00940000157202 #24	ENSGT00940000157943.b #25	ENSGT00940000155338 #26	ENSGT00510000048410 #27	ENSGT00390000007911 #28	ENSGT00940000154881 #29	ENSGT00940000159275 #30	ENSGT00940000154664 #31	ENSGT00390000012959.a #32	ENSGT00940000156331 #33	ENSGT00940000153814.b #34	ENSGT00940000156395 #35	ENSGT00390000014792 #36	ENSGT00390000015789.c.a.b ##37
Long-tailed chinchilla	MODERN SPECIES	158	RETREG3 (ENSCLAG00000016186) #7	PSMC3IP (ENSCLAG00000015875) #8	MLX (ENSCLAG00000017140) #9	COASY (ENSCLAG00000016171) #10	HSD17B1 (ENSCLAG00000016130) #11	NAGLU (ENSCLAG00000016699) #12	ATP6V0A1 (ENSCLAG00000016413) #13	CAVIN1 (ENSCLAG00000016470) #14	STAT3 (ENSCLAG00000014721) #15	ENSCLAG00000016243 #16	ENSCLAG00000016318 #17	GHDC (ENSCLAG00000015892) #18	HCRT (ENSCLAG00000016694) #19	KCNH4 (ENSCLAG00000016815) #20	RAB5C (ENSCLAG00000016650) #21	KAT2A (ENSCLAG00000015084) #22	DHX58 (ENSCLAG00000013960) #23	ZNF385C (ENSCLAG00000015100) #24	NKIRAS2 (ENSCLAG00000014896) #25	DNAJC7 (ENSCLAG00000015312) #26	CNP (ENSCLAG00000015883) #27	ODAD4 (ENSCLAG00000014476) #28	ACLY (ENSCLAG00000014600) #29	KLHL11 (ENSCLAG00000017003) #30	KLHL10 (ENSCLAG00000017306) #31	NT5C3B (ENSCLAG00000015634) #32	FKBP10 (ENSCLAG00000016960) #33	P3H4 (ENSCLAG00000015645) #34	JUP (ENSCLAG00000015947) #35	GAST (ENSCLAG00000016052) #36	ENSCLAG00000015732 #37
Degu	MODERN SPECIES	97	PSMC3IP (ENSODEG00000017995) #8	MLX (ENSODEG00000017951) #9	COASY (ENSODEG00000018042) #10	HSD17B1 (ENSODEG00000018063) #11	NAGLU (ENSODEG00000017945) #12	ATP6V0A1 (ENSODEG00000017959) #13	CAVIN1 (ENSODEG00000017991) #14	ENSODEG00000017971 #15	ENSODEG00000018044 #16	ENSODEG00000018000 #17	GHDC (ENSODEG00000017948) #18	HCRT (ENSODEG00000017993) #19	KCNH4 (ENSODEG00000018039) #20	RAB5C (ENSODEG00000017920) #21	HSPB9 (ENSODEG00000018407)	KAT2A (ENSODEG00000018011) #22	DHX58 (ENSODEG00000017902) #23	ZNF385C (ENSODEG00000018049) #24	NKIRAS2 (ENSODEG00000017843) #25	DNAJC7 (ENSODEG00000017953) #26	CNP (ENSODEG00000017962) #27	ODAD4 (ENSODEG00000017939) #28	ACLY (ENSODEG00000018143) #29	KLHL11 (ENSODEG00000017875) #30	KLHL10 (ENSODEG00000018015) #31	NT5C3B (ENSODEG00000018081) #32	FKBP10 (ENSODEG00000017908) #33	P3H4 (ENSODEG00000017979) #34	JUP (ENSODEG00000017964) #35	GAST (ENSODEG00000017853) #36	EIF1 (ENSODEG00000018101) ##37
Guinea pig	MODERN SPECIES	53	RETREG3 (ENSCPOG00000002844) #7	PSMC3IP (ENSCPOG00000022571) #8	MLX (ENSCPOG00000035377) #9	COASY (ENSCPOG00000006117) #10	HSD17B1 (ENSCPOG00000021970) #11	NAGLU (ENSCPOG00000010613) #12	ATP6V0A1 (ENSCPOG00000011417) #13	CAVIN1 (ENSCPOG00000036454) #14	STAT3 (ENSCPOG00000007939) #15	ENSCPOG00000012203 #16	ENSCPOG00000026466 #17	HCRT (ENSCPOG00000040052) #19	KCNH4 (ENSCPOG00000027074) #20	RAB5C (ENSCPOG00000011190) #21	HSPB9 (ENSCPOG00000026480)	KAT2A (ENSCPOG00000040409) #22	DHX58 (ENSCPOG00000023721) #23	ZNF385C (ENSCPOG00000006417) #24	NKIRAS2 (ENSCPOG00000037805) #25	DNAJC7 (ENSCPOG00000023384) #26	CNP (ENSCPOG00000020940) #27	ODAD4 (ENSCPOG00000023846) #28	ACLY (ENSCPOG00000010813) #29	KLHL11 (ENSCPOG00000021621) #30	KLHL10 (ENSCPOG00000002818) #31	NT5C3B (ENSCPOG00000027400) #32	FKBP10 (ENSCPOG00000020998) #33	P3H4 (ENSCPOG00000026262) #34	JUP (ENSCPOG00000003295) #35	GAST (ENSCPOG00000009853) #36	ENSCPOG00000030441 ##37
Naked mole-rat female	MODERN SPECIES	12	TUBG2 (ENSHGLG00000011925)	TUBG1 (ENSHGLG00000012574)	RETREG3 (ENSHGLG00000011981) #7	ENSHGLG00000013066 #8	MLX (ENSHGLG00000014995) #9	COASY (ENSHGLG00000012414) #10	NAGLU (ENSHGLG00000011489) #12	ATP6V0A1 (ENSHGLG00000018815) #13	CAVIN1 (ENSHGLG00000018343) #14	STAT3 (ENSHGLG00000010906) #15	ENSHGLG00000012522 #17	ENSHGLG00000037543 #18	KCNH4 (ENSHGLG00000011673) #20	ENSHGLG00000046408	ENSHGLG00000032125	KAT2A (ENSHGLG00000014215) #22	DHX58 (ENSHGLG00000011529) #23	ZNF385C (ENSHGLG00000013481) #24	ENSHGLG00000034407	ENSHGLG00000039749 #25	DNAJC7 (ENSHGLG00000016992) #26	CNP (ENSHGLG00000016638) #27	ODAD4 (ENSHGLG00000016605) #28	ACLY (ENSHGLG00000014233) #29	KLHL11 (ENSHGLG00000037770) #30	KLHL10 (ENSHGLG00000018732) #31	NT5C3B (ENSHGLG00000015568) #32	FKBP10 (ENSHGLG00000016119) #33	P3H4 (ENSHGLG00000016255) #34	JUP (ENSHGLG00000019242) #35	GAST (ENSHGLG00000013252) #36