Euarchontoglires_A ANCESTRAL SPECIES 10 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Glires ANCESTRAL SPECIES 9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Rodentia ANCESTRAL SPECIES 9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Rodentia_B ANCESTRAL SPECIES 6 ENSGT00850000133592 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Myomorpha ANCESTRAL SPECIES 1 ENSGT00850000133592 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Muroidea ANCESTRAL SPECIES 1 ENSGT00850000133592 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Muroidea_A ANCESTRAL SPECIES 3 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a #10 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Cricetidae ANCESTRAL SPECIES 2 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a #10 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Cricetinae ANCESTRAL SPECIES 21 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a #10 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Chinese hamster chok1gshd MODERN SPECIES 111 Or13c7e-ps1 (ENSCGRG00001006035) #7 Or13c7b (ENSCGRG00001005118) #8 Or13c7c (ENSCGRG00001006740) #9 Or13c7 (ENSCGRG00001008125) #10 Reck (ENSCGRG00001009973) #11 Glipr2 (ENSCGRG00001024271) #12 Ccin (ENSCGRG00001004610) #13 Clta (ENSCGRG00001019395) #14 Gne (ENSCGRG00001017139) #15 Rnf38 (ENSCGRG00001010268) #16 Melk (ENSCGRG00001005421) #17 Pax5 (ENSCGRG00001022968) #18 Zcchc7 (ENSCGRG00001018503) #19 Grhpr (ENSCGRG00001013235) #20 Zbtb5 (ENSCGRG00001005675) #21 Polr1e (ENSCGRG00001006197) #22 Fbxo10 (ENSCGRG00001004805) #23 ENSCGRG00001024499 #24 Frmpd1 (ENSCGRG00001012628) #25 Trmt10b (ENSCGRG00001006333) #26 Exosc3 (ENSCGRG00001001507) #27 ENSCGRG00001022115 #28 Dcaf10 (ENSCGRG00001019896) #29 Slc25a51 (ENSCGRG00001017602) #30 Shb (ENSCGRG00001017093) #31 Aldh1b1 (ENSCGRG00001004840) #32 Igfbpl1 (ENSCGRG00001014757) #33 Stra6l (ENSCGRG00001022380) #34 ENSCGRG00001002999 #35 Tdrd7 (ENSCGRG00001024164) #36 Tmod1 (ENSCGRG00001022021) #37 Golden Hamster MODERN SPECIES 703 Or13c7b (ENSMAUG00000008555) #8 Or13c7c (ENSMAUG00000008725) #9 Or13c7 (ENSMAUG00000008518) #10 Reck (ENSMAUG00000002463) #11 Glipr2 (ENSMAUG00000013684) #12 Ccin (ENSMAUG00000008789) #13 Clta (ENSMAUG00000019878) #14 Gne (ENSMAUG00000017611) #15 ENSMAUG00000015650 Rnf38 (ENSMAUG00000022251) #16 Melk (ENSMAUG00000010420) #17 Pax5 (ENSMAUG00000020146) #18 Zcchc7 (ENSMAUG00000019812) #19 Grhpr (ENSMAUG00000011406) #20 Zbtb5 (ENSMAUG00000011435) #21 Polr1e (ENSMAUG00000021044) #22 Fbxo10 (ENSMAUG00000021774) #23 ENSMAUG00000007418 #24 Frmpd1 (ENSMAUG00000001981) #25 Trmt10b (ENSMAUG00000014543) #26 Exosc3 (ENSMAUG00000008672) #27 ENSMAUG00000019485 #29 Slc25a51 (ENSMAUG00000021654) #30 Shb (ENSMAUG00000018542) #31 Aldh1b1 (ENSMAUG00000002155) #32 Igfbpl1 (ENSMAUG00000020226) #33 Stra6l (ENSMAUG00000002944) #34 Ccdc180 (ENSMAUG00000015847) #35 Tdrd7 (ENSMAUG00000017503) #36 Tmod1 (ENSMAUG00000008541) #37 Tstd2 (ENSMAUG00000022106) Cricetidae_B ANCESTRAL SPECIES 2 ENSGT00850000133592 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a #10 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Prairie vole MODERN SPECIES 355 ENSMOCG00000010848 Or13c7e-ps1 (ENSMOCG00000002017) #7 Or13c7b (ENSMOCG00000001742) #8 Or13c7 (ENSMOCG00000005825) #10 Reck (ENSMOCG00000012329) #11 Glipr2 (ENSMOCG00000012349) #12 Ccin (ENSMOCG00000008266) #13 Clta (ENSMOCG00000018642) #14 Gne (ENSMOCG00000013723) #15 Rnf38 (ENSMOCG00000021070) #16 Melk (ENSMOCG00000018453) #17 Pax5 (ENSMOCG00000017791) #18 Zcchc7 (ENSMOCG00000017184) #19 Grhpr (ENSMOCG00000013657) #20 Zbtb5 (ENSMOCG00000001112) #21 Polr1e (ENSMOCG00000012920) #22 Fbxo10 (ENSMOCG00000015296) #23 ENSMOCG00000020239 #24 Frmpd1 (ENSMOCG00000012183) #25 Trmt10b (ENSMOCG00000016559) #26 Exosc3 (ENSMOCG00000018110) #27 Dcaf10 (ENSMOCG00000004461) #29 Becn2 (ENSMOCG00000022864) Slc25a51 (ENSMOCG00000013077) #30 Shb (ENSMOCG00000000878) #31 ENSMOCG00000003743 Aldh1b1 (ENSMOCG00000015209) #32 Igfbpl1 (ENSMOCG00000020299) #33 Stra6l (ENSMOCG00000018086) #34 Ccdc180 (ENSMOCG00000019527) #35 Tdrd7 (ENSMOCG00000014310) #36 Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 11 ENSPEMG00000027811 #7 ENSPEMG00000006666 #7 ENSPEMG00000029865 #7 Reck (ENSPEMG00000016931) #11 Glipr2 (ENSPEMG00000008180) #12 Ccin (ENSPEMG00000005922) #13 Clta (ENSPEMG00000016605) #14 Gne (ENSPEMG00000016886) #15 Rnf38 (ENSPEMG00000002845) #16 ENSPEMG00000027413 Melk (ENSPEMG00000015387) #17 Pax5 (ENSPEMG00000013014) #18 Zcchc7 (ENSPEMG00000017839) #19 Grhpr (ENSPEMG00000012140) #20 Zbtb5 (ENSPEMG00000012944) #21 Polr1e (ENSPEMG00000019151) #22 Fbxo10 (ENSPEMG00000016867) #23 ENSPEMG00000013814 #24 ENSPEMG00000030225 Frmpd1 (ENSPEMG00000014452) #25 Trmt10b (ENSPEMG00000019086) #26 Exosc3 (ENSPEMG00000017515) #27 Dcaf10 (ENSPEMG00000013651) #29 Slc25a51 (ENSPEMG00000020001) #30 Shb (ENSPEMG00000031302) #31 Aldh1b1 (ENSPEMG00000001901) #32 Igfbpl1 (ENSPEMG00000000700) #33 Stra6l (ENSPEMG00000000351) #34 ENSPEMG00000026899 #35 Tdrd7 (ENSPEMG00000020225) #36 Tmod1 (ENSPEMG00000020203) #37 Northern American deer mouse MODERN SPECIES 18 Upf2 (ENSPEMG00000015731) Proser2 (ENSPEMG00000031395) Echdc3 (ENSPEMG00000009850) Usp6nl (ENSPEMG00000015329) ENSPEMG00000009398 Celf2 (ENSPEMG00000017244) ENSPEMG00000030354 Gata3 (ENSPEMG00000019986) Taf3 (ENSPEMG00000020120) ENSPEMG00000027014 Atp5c1 (ENSPEMG00000020033) ENSPEMG00000020236 Itih2 (ENSPEMG00000007752) Itih5 (ENSPEMG00000019780) ENSPEMG00000019758 ENSPEMG00000022300 #22 Prkcq (ENSPEMG00000021726) ENSPEMG00000025508 Pfkfb3 (ENSPEMG00000014616) Rbm17 (ENSPEMG00000014320) ENSPEMG00000009292 Il2ra (ENSPEMG00000012027) Il15ra (ENSPEMG00000023000) Fbh1 (ENSPEMG00000023309) Ankrd16 (ENSPEMG00000027924) ENSPEMG00000005408 Gdi2 (ENSPEMG00000021863) Tasor2 (ENSPEMG00000023472) Asb13 (ENSPEMG00000023155) ENSPEMG00000025388 Calml3 (ENSPEMG00000005855) Murinae ANCESTRAL SPECIES 2 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.b #7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a #10 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Mus ANCESTRAL SPECIES 3 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a #10 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Mus_A ANCESTRAL SPECIES 3 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a #10 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Mus_B ANCESTRAL SPECIES 5 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a #10 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Mus_C ANCESTRAL SPECIES 2 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.i ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b.h.a.a #10 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Steppe mouse MODERN SPECIES 3331 Or13c7c (ENSMSIG00000019498) #9 Or13c7 (ENSMSIG00000019512) #10 Reck (ENSMSIG00000019518) #11 Glipr2 (ENSMSIG00000019558) #12 Ccin (ENSMSIG00000019576) #13 Clta (ENSMSIG00000019584) #14 Gne (ENSMSIG00000019664) #15 ENSMSIG00000019729 Rnf38 (ENSMSIG00000019773) #16 Melk (ENSMSIG00000019831) #17 Pax5 (ENSMSIG00000019898) #18 Zcchc7 (ENSMSIG00000019944) #19 ENSMSIG00000019971 Grhpr (ENSMSIG00000019984) #20 Zbtb5 (ENSMSIG00000019997) #21 Polr1e (ENSMSIG00000020005) #22 Fbxo10 (ENSMSIG00000020124) #23 ENSMSIG00000020129 #24 Frmpd1 (ENSMSIG00000020143) #25 ENSMSIG00000020183 #26 Exosc3 (ENSMSIG00000020230) #27 Dcaf10 (ENSMSIG00000020238) #29 Slc25a51 (ENSMSIG00000020257) #30 Shb (ENSMSIG00000020268) #31 Aldh1b1 (ENSMSIG00000020300) #32 Igfbpl1 (ENSMSIG00000020303) #33 Stra6l (ENSMSIG00000020318) #34 Ccdc180 (ENSMSIG00000020353) #35 Tdrd7 (ENSMSIG00000020372) #36 Tmod1 (ENSMSIG00000020446) #37 Tstd2 (ENSMSIG00000020481) spretus MODERN SPECIES 13 Or13c7d (MGP_SPRETEiJ_G0026915) ##7 Or13c7b (MGP_SPRETEiJ_G0026916) #8 Or13c7c (MGP_SPRETEiJ_G0026917) #9 Or13c7 (MGP_SPRETEiJ_G0026918) #10 Reck (MGP_SPRETEiJ_G0026919) #11 Glipr2 (MGP_SPRETEiJ_G0026920) #12 Ccin (MGP_SPRETEiJ_G0026921) #13 Clta (MGP_SPRETEiJ_G0026922) #14 Gne (MGP_SPRETEiJ_G0026923) #15 Rnf38 (MGP_SPRETEiJ_G0026924) #16 Melk (MGP_SPRETEiJ_G0026925) #17 Pax5 (MGP_SPRETEiJ_G0026926) #18 Zcchc7 (MGP_SPRETEiJ_G0026927) #19 Grhpr (MGP_SPRETEiJ_G0026928) #20 Zbtb5 (MGP_SPRETEiJ_G0026929) #21 Polr1e (MGP_SPRETEiJ_G0026930) #22 Fbxo10 (MGP_SPRETEiJ_G0026931) #23 Frmpd1 (MGP_SPRETEiJ_G0026932) #25 Trmt10b (MGP_SPRETEiJ_G0026933) #26 Exosc3 (MGP_SPRETEiJ_G0026934) #27 Dcaf10 (MGP_SPRETEiJ_G0026935) #29 Shb (MGP_SPRETEiJ_G0026937) #31 Aldh1b1 (MGP_SPRETEiJ_G0026938) #32 Igfbpl1 (MGP_SPRETEiJ_G0026939) #33 Stra6l (MGP_SPRETEiJ_G0026940) #34 Ccdc180 (MGP_SPRETEiJ_G0026941) #35 Tdrd7 (MGP_SPRETEiJ_G0026942) #36 Tmod1 (MGP_SPRETEiJ_G0026943) #37 Tstd2 (MGP_SPRETEiJ_G0026944) Ncbp1 (MGP_SPRETEiJ_G0026945) Xpa (MGP_SPRETEiJ_G0026946) Mouse MODERN SPECIES 13 Or13c7e-ps1 (ENSMUSG00000111338) #7 Or13c7b (ENSMUSG00000110970) #8 Or13c7c (ENSMUSG00000111611) #9 Or13c7 (ENSMUSG00000071000) #10 Reck (ENSMUSG00000028476) #11 Glipr2 (ENSMUSG00000028480) #12 Ccin (ENSMUSG00000070999) #13 Clta (ENSMUSG00000028478) #14 Gne (ENSMUSG00000028479) #15 Rnf38 (ENSMUSG00000035696) #16 Melk (ENSMUSG00000035683) #17 Pax5 (ENSMUSG00000014030) #18 Zcchc7 (ENSMUSG00000035649) #19 Grhpr (ENSMUSG00000035637) #20 Zbtb5 (ENSMUSG00000049657) #21 Polr1e (ENSMUSG00000028318) #22 Fbxo10 (ENSMUSG00000048232) #23 Tomm5 (ENSMUSG00000078713) Frmpd1 (ENSMUSG00000035615) #25 Trmt10b (ENSMUSG00000035601) #26 Exosc3 (ENSMUSG00000028322) #27 Dcaf10 (ENSMUSG00000035572) #29 Slc25a51 (ENSMUSG00000045973) #30 Shb (ENSMUSG00000044813) #31 Aldh1b1 (ENSMUSG00000035561) #32 Igfbpl1 (ENSMUSG00000035551) #33 Stra6l (ENSMUSG00000028327) #34 Ccdc180 (ENSMUSG00000035539) #35 Tdrd7 (ENSMUSG00000035517) #36 Tmod1 (ENSMUSG00000028328) #37 Tstd2 (ENSMUSG00000035495) Ryukyu mouse MODERN SPECIES 13 Or13j1 (MGP_CAROLIEiJ_G0025952) ##7 Hrct1 (MGP_CAROLIEiJ_G0025953) MGP_CAROLIEiJ_G0025954 #9 Or13c7 (MGP_CAROLIEiJ_G0025955) #10 Reck (MGP_CAROLIEiJ_G0025956) #11 Glipr2 (MGP_CAROLIEiJ_G0025957) #12 Ccin (MGP_CAROLIEiJ_G0025958) #13 Clta (MGP_CAROLIEiJ_G0025959) #14 Gne (MGP_CAROLIEiJ_G0025960) #15 Rnf38 (MGP_CAROLIEiJ_G0025961) #16 Melk (MGP_CAROLIEiJ_G0025962) #17 Pax5 (MGP_CAROLIEiJ_G0025963) #18 Zcchc7 (MGP_CAROLIEiJ_G0025964) #19 Grhpr (MGP_CAROLIEiJ_G0025965) #20 Zbtb5 (MGP_CAROLIEiJ_G0025966) #21 Polr1e (MGP_CAROLIEiJ_G0025967) #22 Fbxo10 (MGP_CAROLIEiJ_G0025968) #23 Frmpd1 (MGP_CAROLIEiJ_G0025969) #25 Trmt10b (MGP_CAROLIEiJ_G0025970) #26 Exosc3 (MGP_CAROLIEiJ_G0025971) #27 Dcaf10 (MGP_CAROLIEiJ_G0025972) #29 Slc25a51 (MGP_CAROLIEiJ_G0025973) #30 Shb (MGP_CAROLIEiJ_G0025974) #31 Aldh1b1 (MGP_CAROLIEiJ_G0025975) #32 Igfbpl1 (MGP_CAROLIEiJ_G0025976) #33 Stra6l (MGP_CAROLIEiJ_G0025977) #34 Ccdc180 (MGP_CAROLIEiJ_G0025978) #35 Tdrd7 (MGP_CAROLIEiJ_G0025979) #36 Tmod1 (MGP_CAROLIEiJ_G0025980) #37 MGP_CAROLIEiJ_G0025981 Ncbp1 (MGP_CAROLIEiJ_G0025982) Shrew mouse MODERN SPECIES 14 Or13c7d (MGP_PahariEiJ_G0024099) ##7 Or13c7b (MGP_PahariEiJ_G0024100) #8 MGP_PahariEiJ_G0024101 #9 Or13c7 (MGP_PahariEiJ_G0024102) #10 Reck (MGP_PahariEiJ_G0024103) #11 Glipr2 (MGP_PahariEiJ_G0024104) #12 Ccin (MGP_PahariEiJ_G0024105) #13 Clta (MGP_PahariEiJ_G0024106) #14 Gne (MGP_PahariEiJ_G0024107) #15 Rnf38 (MGP_PahariEiJ_G0024108) #16 Melk (MGP_PahariEiJ_G0024109) #17 Pax5 (MGP_PahariEiJ_G0024110) #18 Zcchc7 (MGP_PahariEiJ_G0024111) #19 Grhpr (MGP_PahariEiJ_G0024112) #20 Zbtb5 (MGP_PahariEiJ_G0024113) #21 Polr1e (MGP_PahariEiJ_G0024114) #22 MGP_PahariEiJ_G0024115 #23 Frmpd1 (MGP_PahariEiJ_G0024116) #25 Trmt10b (MGP_PahariEiJ_G0024117) #26 Exosc3 (MGP_PahariEiJ_G0024118) #27 Dcaf10 (MGP_PahariEiJ_G0024119) #29 Rat MODERN SPECIES 15 Or13c7c (ENSRNOG00000070597) #9 Or13c7 (ENSRNOG00000068857) ##7 Reck (ENSRNOG00000014863) #11 ENSRNOG00000070166 Glipr2 (ENSRNOG00000014838) #12 Ccin (ENSRNOG00000014831) #13 Clta (ENSRNOG00000014635) #14 Gne (ENSRNOG00000014365) #15 Rnf38 (ENSRNOG00000013956) #16 Melk (ENSRNOG00000013598) #17 LOC100359916 (ENSRNOG00000013579) Pax5 (ENSRNOG00000024729) #18 Zcchc7 (ENSRNOG00000013078) #19 Grhpr (ENSRNOG00000012794) #20 Zbtb5 (ENSRNOG00000012726) #21 Polr1e (ENSRNOG00000012664) #22 Fbxo10 (ENSRNOG00000012634) #23 Tomm5 (ENSRNOG00000062108) #24 Frmpd1 (ENSRNOG00000012546) #25 Trmt10b (ENSRNOG00000012454) #26 Exosc3 (ENSRNOG00000012409) #27 Dcaf10 (ENSRNOG00000011655) #29 Slc25a51 (ENSRNOG00000039278) #30 Shb (ENSRNOG00000011503) #31 Aldh1b1 (ENSRNOG00000011497) #32 Igfbpl1 (ENSRNOG00000011320) #33 Stra6l (ENSRNOG00000010497) #34 Ccdc180 (ENSRNOG00000010412) #35 Tdrd7 (ENSRNOG00000055779) #36 ENSRNOG00000062835 Tmod1 (ENSRNOG00000009761) #37 Upper Galilee mountains blind mole rat MODERN SPECIES 1399 Or13c7b (ENSNGAG00000000272) #8 Or13c7c (ENSNGAG00000014920) #9 Reck (ENSNGAG00000000317) #11 Glipr2 (ENSNGAG00000017672) #12 Ccin (ENSNGAG00000014353) #13 Clta (ENSNGAG00000000463) #14 Gne (ENSNGAG00000013811) #15 Rnf38 (ENSNGAG00000016714) #16 ENSNGAG00000015087 Melk (ENSNGAG00000017903) #17 ENSNGAG00000000934 Pax5 (ENSNGAG00000011551) #18 Zcchc7 (ENSNGAG00000001898) #19 Grhpr (ENSNGAG00000018848) #20 Zbtb5 (ENSNGAG00000013653) #21 Polr1e (ENSNGAG00000002520) #22 Fbxo10 (ENSNGAG00000018904) #23 ENSNGAG00000017070 #24 Frmpd1 (ENSNGAG00000016054) #25 Trmt10b (ENSNGAG00000018319) #26 Exosc3 (ENSNGAG00000017709) #27 ENSNGAG00000016718 #29 Slc25a51 (ENSNGAG00000009671) #30 Shb (ENSNGAG00000000840) #31 Aldh1b1 (ENSNGAG00000000163) #32 Igfbpl1 (ENSNGAG00000016782) #33 Stra6l (ENSNGAG00000020675) #34 Ccdc180 (ENSNGAG00000000146) #35 Tdrd7 (ENSNGAG00000019791) #36 Tmod1 (ENSNGAG00000008764) #37 Tstd2 (ENSNGAG00000016103) Lesser Egyptian jerboa MODERN SPECIES 66 Creb3 (ENSJJAG00000003441) Gba2 (ENSJJAG00000020885) Msmp (ENSJJAG00000004151) Rgp1 (ENSJJAG00000016667) Npr2 (ENSJJAG00000021290) Spag8 (ENSJJAG00000016823) Hint2 (ENSJJAG00000005863) ENSJJAG00000018868 ENSJJAG00000013795 Or13e8 (ENSJJAG00000012082) Reck (ENSJJAG00000022950) #11 Glipr2 (ENSJJAG00000018465) #12 Ccin (ENSJJAG00000002839) #13 Pax5 (ENSJJAG00000018900) #18 ENSJJAG00000010512 #19 Polr1e (ENSJJAG00000020731) #22 Fbxo10 (ENSJJAG00000016171) #23 ENSJJAG00000011290 #24 Frmpd1 (ENSJJAG00000014679) #25 ENSJJAG00000011255 #29 Shb (ENSJJAG00000000259) #31 Aldh1b1 (ENSJJAG00000002242) #32 Stra6l (ENSJJAG00000014770) #34 Ccdc180 (ENSJJAG00000020108) #35 Tdrd7 (ENSJJAG00000012908) #36 Tmod1 (ENSJJAG00000006511) #37 Tstd2 (ENSJJAG00000018130) Kangaroo rat MODERN SPECIES 414 Hrct1 (ENSDORG00000029256) ENSDORG00000015734 #7 Or13c7c (ENSDORG00000026683) #9 Reck (ENSDORG00000012827) #11 ENSDORG00000012831 #12 Ccin (ENSDORG00000012835) #13 Clta (ENSDORG00000005019) #14 Gne (ENSDORG00000005022) #15 Rnf38 (ENSDORG00000005357) #16 ENSDORG00000028581 Melk (ENSDORG00000015636) #17 Pax5 (ENSDORG00000015818) #18 ENSDORG00000013166 #19 Grhpr (ENSDORG00000013167) #20 Zbtb5 (ENSDORG00000013170) #21 ENSDORG00000026463 #22 Fbxo10 (ENSDORG00000015479) #23 ENSDORG00000028709 #24 Frmpd1 (ENSDORG00000014364) #25 Trmt10b (ENSDORG00000014365) #26 Exosc3 (ENSDORG00000014366) #27 ENSDORG00000014368 #29 Slc25a51 (ENSDORG00000025212) #30 Shb (ENSDORG00000003810) #31 ENSDORG00000028305 #33 Stra6l (ENSDORG00000025957) #34 Rodentia_A ANCESTRAL SPECIES 11 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Sciuridae ANCESTRAL SPECIES 6 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b.a #25 ENSGT00950000183035.b.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530.c #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 Marmotini ANCESTRAL SPECIES 1 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530.c #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Marmotini_b ANCESTRAL SPECIES 2 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.a.a.b ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.a ##7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530.c #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Squirrel MODERN SPECIES 124 ENSSTOG00000022728 ##7 ENSSTOG00000027055 #8 ENSSTOG00000019481 #9 ENSSTOG00000028123 ##7 RECK (ENSSTOG00000004971) #11 GLIPR2 (ENSSTOG00000005016) #12 CCIN (ENSSTOG00000022524) #13 CLTA (ENSSTOG00000005034) #14 GNE (ENSSTOG00000005049) #15 RNF38 (ENSSTOG00000005075) #16 MELK (ENSSTOG00000005106) #17 PAX5 (ENSSTOG00000024354) #18 ZCCHC7 (ENSSTOG00000030723) #19 GRHPR (ENSSTOG00000009804) #20 ZBTB5 (ENSSTOG00000027806) #21 POLR1E (ENSSTOG00000009810) #22 FBXO10 (ENSSTOG00000009819) #23 TOMM5 (ENSSTOG00000031862) #24 FRMPD1 (ENSSTOG00000009836) #25 TRMT10B (ENSSTOG00000024001) #26 EXOSC3 (ENSSTOG00000009859) #27 DCAF10 (ENSSTOG00000009869) #29 SHB (ENSSTOG00000028296) #31 ALDH1B1 (ENSSTOG00000013325) #32 ENSSTOG00000033005 #33 ENSSTOG00000033234 #34 CCDC180 (ENSSTOG00000015824) #35 TDRD7 (ENSSTOG00000002628) #36 TMOD1 (ENSSTOG00000002660) #37 TSTD2 (ENSSTOG00000002672) NCBP1 (ENSSTOG00000002695) Arctic ground squirrel MODERN SPECIES 19 ENSUPAG00010017611 ##7 ENSUPAG00010017609 ##7 ENSUPAG00010017603 #9 RECK (ENSUPAG00010017580) #11 GLIPR2 (ENSUPAG00010017575) #12 CCIN (ENSUPAG00010017573) #13 CLTA (ENSUPAG00010017440) #14 GNE (ENSUPAG00010017395) #15 RNF38 (ENSUPAG00010017340) #16 MELK (ENSUPAG00010017322) #17 ENSUPAG00010017319 PAX5 (ENSUPAG00010016838) #18 ZCCHC7 (ENSUPAG00010016816) #19 GRHPR (ENSUPAG00010016805) #20 ZBTB5 (ENSUPAG00010016792) #21 POLR1E (ENSUPAG00010016755) #22 FBXO10 (ENSUPAG00010016739) #23 TOMM5 (ENSUPAG00010016729) #24 FRMPD1 (ENSUPAG00010016707) #25 TRMT10B (ENSUPAG00010016693) #26 EXOSC3 (ENSUPAG00010016683) #27 ENSUPAG00010016671 DCAF10 (ENSUPAG00010016664) #29 ENSUPAG00010016660 #30 SHB (ENSUPAG00010016652) #31 ALDH1B1 (ENSUPAG00010016648) #32 IGFBPL1 (ENSUPAG00010016645) #33 ENSUPAG00010016572 #34 ENSUPAG00010016558 #35 TDRD7 (ENSUPAG00010016511) #36 TMOD1 (ENSUPAG00010016501) #37 Alpin marmot MODERN SPECIES 30 ENSMMMG00000006499 #9 ENSMMMG00000006479 ##7 RECK (ENSMMMG00000006434) #11 ENSMMMG00000006426 GLIPR2 (ENSMMMG00000006416) #12 CCIN (ENSMMMG00000006403) #13 CLTA (ENSMMMG00000006329) #14 GNE (ENSMMMG00000006274) #15 RNF38 (ENSMMMG00000006231) #16 MELK (ENSMMMG00000006206) #17 PAX5 (ENSMMMG00000005750) #18 ENSMMMG00000005736 ZCCHC7 (ENSMMMG00000005723) #19 GRHPR (ENSMMMG00000005712) #20 ZBTB5 (ENSMMMG00000005710) #21 POLR1E (ENSMMMG00000005675) #22 FBXO10 (ENSMMMG00000005655) #23 TOMM5 (ENSMMMG00000005643) #24 FRMPD1 (ENSMMMG00000005612) #25 TRMT10B (ENSMMMG00000005605) #26 EXOSC3 (ENSMMMG00000005591) #27 DCAF10 (ENSMMMG00000005574) #29 ENSMMMG00000005556 #30 SHB (ENSMMMG00000005488) #31 ALDH1B1 (ENSMMMG00000005452) #32 IGFBPL1 (ENSMMMG00000005435) #33 ENSMMMG00000005367 #34 ENSMMMG00000005349 #35 TDRD7 (ENSMMMG00000005278) #36 TMOD1 (ENSMMMG00000005253) #37 TSTD2 (ENSMMMG00000005223) Eurasian red squirrel MODERN SPECIES 6 RECK (ENSSVLG00005013970) #11 ENSSVLG00005014201 GLIPR2 (ENSSVLG00005014266) #12 CCIN (ENSSVLG00005014341) #13 CLTA (ENSSVLG00005014370) #14 ENSSVLG00005014548 GNE (ENSSVLG00005014623) #15 ENSSVLG00005014854 RNF38 (ENSSVLG00005014911) #16 MELK (ENSSVLG00005015313) #17 ENSSVLG00005016415 PAX5 (ENSSVLG00005016527) #18 ZCCHC7 (ENSSVLG00005017311) #19 GRHPR (ENSSVLG00005017339) #20 ZBTB5 (ENSSVLG00005017378) #21 POLR1E (ENSSVLG00005017394) #22 FBXO10 (ENSSVLG00005017431) #23 TOMM5 (ENSSVLG00005017466) #24 ENSSVLG00005017504 #25 ENSSVLG00005017570 #26 FRMPD1 (ENSSVLG00005017736) #25 TRMT10B (ENSSVLG00005017913) #26 EXOSC3 (ENSSVLG00005018085) #27 DCAF10 (ENSSVLG00005018149) #29 ENSSVLG00005018230 #30 SHB (ENSSVLG00005018249) #31 ALDH1B1 (ENSSVLG00005018273) #32 IGFBPL1 (ENSSVLG00005018288) #33 ENSSVLG00005018345 #34 CCDC180 (ENSSVLG00005018531) #35 TDRD7 (ENSSVLG00005018953) #36 Hystricomorpha ANCESTRAL SPECIES 7 ENSGT01040000240406.A.a ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Hystricomorpha_a ANCESTRAL SPECIES 5 ENSGT01040000240406.A.a ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 Hystricomorpha_b ANCESTRAL SPECIES 11 ENSGT01040000240406.A.a ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.b #8 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.b #7 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00940000162530 #32 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 ENSGT00390000001733 Long-tailed chinchilla MODERN SPECIES 126 RNF38 (ENSCLAG00000013858) #16 MELK (ENSCLAG00000015692) #17 PAX5 (ENSCLAG00000011362) #18 ZCCHC7 (ENSCLAG00000013297) #19 GRHPR (ENSCLAG00000017032) #20 ZBTB5 (ENSCLAG00000014427) #21 POLR1E (ENSCLAG00000012701) #22 FBXO10 (ENSCLAG00000015441) #23 ENSCLAG00000015419 FRMPD1 (ENSCLAG00000014753) #25 TRMT10B (ENSCLAG00000013716) #26 EXOSC3 (ENSCLAG00000016689) #27 DCAF10 (ENSCLAG00000014621) #29 ENSCLAG00000012730 #30 SHB (ENSCLAG00000014490) #31 ALDH1B1 (ENSCLAG00000015458) #32 IGFBPL1 (ENSCLAG00000011178) #33 ENSCLAG00000010615 #34 CCDC180 (ENSCLAG00000010561) #35 TDRD7 (ENSCLAG00000013247) #36 TMOD1 (ENSCLAG00000013715) #37 TSTD2 (ENSCLAG00000010703) Degu MODERN SPECIES 86 ENSODEG00000020178 #7 ENSODEG00000020150 ENSODEG00000014606 RECK (ENSODEG00000015090) #11 ENSODEG00000013847 #12 ENSODEG00000020318 #13 ENSODEG00000020206 #13 ENSODEG00000015178 #14 GNE (ENSODEG00000014784) #15 RNF38 (ENSODEG00000014850) #16 ENSODEG00000015450 MELK (ENSODEG00000015169) #17 PAX5 (ENSODEG00000014314) #18 ENSODEG00000014628 #20 ZBTB5 (ENSODEG00000013905) #21 POLR1E (ENSODEG00000014565) #22 FBXO10 (ENSODEG00000013432) #23 FRMPD1 (ENSODEG00000016482) #25 ENSODEG00000014904 #27 DCAF10 (ENSODEG00000015520) #29 ENSODEG00000020274 #30 SHB (ENSODEG00000013286) #31 ALDH1B1 (ENSODEG00000014240) #32 IGFBPL1 (ENSODEG00000013895) #33 PRMT2 (ENSODEG00000013920) DIP2A (ENSODEG00000013484) YBEY (ENSODEG00000014950) MCM3AP (ENSODEG00000013662) LSS (ENSODEG00000014728) SPATC1L (ENSODEG00000013418) FTCD (ENSODEG00000013308) Guinea pig MODERN SPECIES 27 ENSCPOG00000015207 #7 ENSCPOG00000030507 #7 ENSCPOG00000031231 #9 ENSCPOG00000020464 #7 RECK (ENSCPOG00000006953) #11 GLIPR2 (ENSCPOG00000013329) #12 ENSCPOG00000035667 #13 ENSCPOG00000040417 #13 CLTA (ENSCPOG00000013495) #14 GNE (ENSCPOG00000003113) #15 RNF38 (ENSCPOG00000023073) #16 MELK (ENSCPOG00000014591) #17 PAX5 (ENSCPOG00000009987) #18 ZCCHC7 (ENSCPOG00000013472) #19 GRHPR (ENSCPOG00000012676) #20 POLR1E (ENSCPOG00000009965) #22 FBXO10 (ENSCPOG00000023734) #23 TOMM5 (ENSCPOG00000040729) #24 FRMPD1 (ENSCPOG00000008617) #25 TRMT10B (ENSCPOG00000008629) #26 EXOSC3 (ENSCPOG00000008634) #27 DCAF10 (ENSCPOG00000008918) #29 ENSCPOG00000032603 #30 SHB (ENSCPOG00000026958) #31 IGFBPL1 (ENSCPOG00000031891) #33 ENSCPOG00000026193 #34 CCDC180 (ENSCPOG00000034938) #35 TDRD7 (ENSCPOG00000000488) #36 TMOD1 (ENSCPOG00000000489) #37 TSTD2 (ENSCPOG00000010065) NCBP1 (ENSCPOG00000012573) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 3 ENSHGLG00000021386 NPR2 (ENSHGLG00000018381) ENSHGLG00000018211 HINT2 (ENSHGLG00000047552) FAM221B (ENSHGLG00000050266) TMEM8B (ENSHGLG00000019082) ENSHGLG00000021263 ##7 ENSHGLG00000001113 #16 ENSHGLG00000040072 ENSHGLG00000035889 MELK (ENSHGLG00000001242) #17 PAX5 (ENSHGLG00000001494) #18 ZCCHC7 (ENSHGLG00000001861) #19 GRHPR (ENSHGLG00000001941) #20 ZBTB5 (ENSHGLG00000001995) #21 POLR1E (ENSHGLG00000002036) #22 FBXO10 (ENSHGLG00000002122) #23 ENSHGLG00000048436 FRMPD1 (ENSHGLG00000002272) #25 TRMT10B (ENSHGLG00000002406) #26 EXOSC3 (ENSHGLG00000002453) #27 DCAF10 (ENSHGLG00000005287) #29 SLC25A51 (ENSHGLG00000046859) #30 SHB (ENSHGLG00000003821) #31 ENSHGLG00000042112 ENSHGLG00000003240 #33 ENSHGLG00000003016 #34 ENSHGLG00000002600 #35 TDRD7 (ENSHGLG00000001669) #36 ENSHGLG00000042975 TMOD1 (ENSHGLG00000001466) #37 Naked mole-rat female MODERN SPECIES 2 ENSHGLG00000035827 GPC6 (ENSHGLG00000001128) GPC5 (ENSHGLG00000000656) ENSHGLG00000046381 ENSHGLG00000001081 ENSHGLG00000001464 ENSHGLG00000020258 ENSHGLG00000039195 ENSHGLG00000037714 SLITRK5 (ENSHGLG00000048548) SLITRK6 (ENSHGLG00000000248) ENSHGLG00000048637 ENSHGLG00000048999 ENSHGLG00000042637 SLITRK1 (ENSHGLG00000043563) ENSHGLG00000039595 #22 ENSHGLG00000034169 ENSHGLG00000045715 ENSHGLG00000020347 ENSHGLG00000035032 ENSHGLG00000046472 ENSHGLG00000008798 ENSHGLG00000033175 ENSHGLG00000045889 ENSHGLG00000003995 OBI1 (ENSHGLG00000006081) POU4F1 (ENSHGLG00000007136) EDNRB (ENSHGLG00000010112) SLAIN1 (ENSHGLG00000008516) ENSHGLG00000037008 SCEL (ENSHGLG00000010544) Lagomorpha ANCESTRAL SPECIES 23 ENSGT00940000157861 ENSGT00940000164268 ENSGT01040000240406.A.a ##7 ENSGT01040000240406.A.b.a.a.a.a.a.a.a.a.d.b.a.a.b.a.a.a #9 ENSGT00390000018540 #11 ENSGT00390000020276.rb #12 ENSGT00940000162268 #13 ENSGT00940000157347 #14 ENSGT00390000017246 #15 ENSGT00940000156228 #16 ENSGT00940000154889 #17 ENSGT00940000159636 #18 ENSGT00950000183041.B #19 ENSGT00940000158578 #20 ENSGT00940000160246 #21 ENSGT00390000018004 #22 ENSGT00530000063425.a.a.a.b #23 ENSGT00940000163364 #24 ENSGT00950000183035.b #25 ENSGT00530000063169.b.a #26 ENSGT00940000153596.A #27 ENSGT00390000012666 #29 ENSGT00940000155622 #30 ENSGT00940000161591 #31 ENSGT00530000063555.A.a.b #33 ENSGT00940000153246.a.a.b #34 ENSGT00940000153246.b #35 ENSGT00890000139482 #36 ENSGT00940000158695 #37 ENSGT00390000016307 ENSGT00390000001733 Rabbit MODERN SPECIES ENSOCUG00000034869 #9 ENSOCUG00000011572 #9 RECK (ENSOCUG00000015652) #11 GLIPR2 (ENSOCUG00000000007) #12 CCIN (ENSOCUG00000000008) #13 CLTA (ENSOCUG00000000009) #14 GNE (ENSOCUG00000000010) #15 ENSOCUG00000014164 #16 MELK (ENSOCUG00000001041) #17 PAX5 (ENSOCUG00000012281) #18 ENSOCUG00000030564 ENSOCUG00000022333 ZCCHC7 (ENSOCUG00000001002) #19 GRHPR (ENSOCUG00000007031) #20 ZBTB5 (ENSOCUG00000007041) #21 POLR1E (ENSOCUG00000024773) #22 FBXO10 (ENSOCUG00000001992) #23 TOMM5 (ENSOCUG00000001996) #24 FRMPD1 (ENSOCUG00000000068) #25 TRMT10B (ENSOCUG00000010994) #26 EXOSC3 (ENSOCUG00000003598) #27 DCAF10 (ENSOCUG00000002438) #29 ENSOCUG00000003830 #30 SHB (ENSOCUG00000003832) #31 IGFBPL1 (ENSOCUG00000007935) #33 ENSOCUG00000025908 #34 TDRD7 (ENSOCUG00000000060) #36 TMOD1 (ENSOCUG00000013831) #37 TSTD2 (ENSOCUG00000013841) NCBP1 (ENSOCUG00000013853) XPA (ENSOCUG00000013881) Pika MODERN SPECIES 2059 ZCCHC7 (ENSOPRG00000014166) #19 GRHPR (ENSOPRG00000014183) #20 ZBTB5 (ENSOPRG00000014200) #21 POLR1E (ENSOPRG00000014206) #22 FBXO10 (ENSOPRG00000014229) #23 ENSOPRG00000014248 FRMPD1 (ENSOPRG00000014261) #25 TRMT10B (ENSOPRG00000014307) #26 EXOSC3 (ENSOPRG00000014324) #27 DCAF10 (ENSOPRG00000014337) #29 Tree shrew MODERN SPECIES 1747 POLR1E (ENSTBEG00000013786) #22 FBXO10 (ENSTBEG00000014233) #23 ENSTBEG00000014347 FRMPD1 (ENSTBEG00000014405) #25 TRMT10B (ENSTBEG00000014913) #26 EXOSC3 (ENSTBEG00000014991) #27