Chordata	ANCESTRAL SPECIES																	ENSGT00940000157505 #22
Vertebrata	ANCESTRAL SPECIES	103														ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22
Gnathostomata	ANCESTRAL SPECIES	223												ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31
Euteleostomi	ANCESTRAL SPECIES	6	ENSGT01030000234532.B.e.b	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.a
Sarcopterygii	ANCESTRAL SPECIES	9	ENSGT01030000234532.B.e.b	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT01030000235447
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT01030000234532.B.e.b	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.b
Amniota	ANCESTRAL SPECIES	15	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Mammalia	ANCESTRAL SPECIES	28	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475
Theria	ANCESTRAL SPECIES	22	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00960000188521	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Primates	ANCESTRAL SPECIES	2	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00910000147890	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00910000147890	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.b #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b
Hominidae	ANCESTRAL SPECIES	22	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.b #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.b.a.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00910000147041 #16	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00940000160452.n
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.b.a.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00910000147041 #16	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00940000160452.n
Pan	ANCESTRAL SPECIES	20	ENSGT00390000005764.g.a #7	ENSGT00510000046986.m.a #10	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.b.a.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00910000147041 #16	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00940000160452.n
Chimpanzee	MODERN SPECIES	6	TIPIN (ENSPTRG00000007192) #7	ENSPTRG00000051889 #8	MAP2K1 (ENSPTRG00000007193) #9	ENSPTRG00000049603 #10	SNAPC5 (ENSPTRG00000007194) #11	RPL4 (ENSPTRG00000007195) #12	ZWILCH (ENSPTRG00000007196) #13	LCTL (ENSPTRG00000007197) #14	SMAD6 (ENSPTRG00000007198) #15	ENSPTRG00000044014 #16	ENSPTRG00000047146 #17	SMAD3 (ENSPTRG00000007199) #18	AAGAB (ENSPTRG00000007202) #19	IQCH (ENSPTRG00000007205) #20	C15H15orf61 (ENSPTRG00000030250) #21	MAP2K5 (ENSPTRG00000007207) #22	ENSPTRG00000048990 #23	SKOR1 (ENSPTRG00000007209) #24	PIAS1 (ENSPTRG00000007210) #25	CALML4 (ENSPTRG00000007211) #26	CLN6 (ENSPTRG00000007212) #27	FEM1B (ENSPTRG00000007214) #28	ITGA11 (ENSPTRG00000007215) #29	CORO2B (ENSPTRG00000007218) #30	ANP32A (ENSPTRG00000007219) #31	ENSPTRG00000050341 #32	SPESP1 (ENSPTRG00000007221) #33	NOX5 (ENSPTRG00000007222) #34	GLCE (ENSPTRG00000007224) #35	PAQR5 (ENSPTRG00000040959) #36	KIF23 (ENSPTRG00000007227) #37
Bonobo	MODERN SPECIES	6	ENSPPAG00000041842 #8	ENSPPAG00000038145	MAP2K1 (ENSPPAG00000028577) #9	ENSPPAG00000033063 #10	SNAPC5 (ENSPPAG00000041196) #11	ENSPPAG00000035309 #12	ZWILCH (ENSPPAG00000033861) #13	LCTL (ENSPPAG00000040836) #14	SMAD6 (ENSPPAG00000027722) #15	ENSPPAG00000036915 #16	ENSPPAG00000020485 #17	SMAD3 (ENSPPAG00000033769) #18	AAGAB (ENSPPAG00000041055) #19	IQCH (ENSPPAG00000042974) #20	C15orf61 (ENSPPAG00000026999) #21	MAP2K5 (ENSPPAG00000036945) #22	ENSPPAG00000033373 #23	ENSPPAG00000036055 #24	PIAS1 (ENSPPAG00000041443) #25	ENSPPAG00000033363 #26	CLN6 (ENSPPAG00000030498) #27	FEM1B (ENSPPAG00000030523) #28	ITGA11 (ENSPPAG00000030683) #29	CORO2B (ENSPPAG00000030458) #30	ENSPPAG00000034193 #31	ENSPPAG00000020890 #32	SPESP1 (ENSPPAG00000040777) #33	NOX5 (ENSPPAG00000038195) #34	GLCE (ENSPPAG00000034026) #35	PAQR5 (ENSPPAG00000043450) #36	KIF23 (ENSPPAG00000038174) #37
Human	MODERN SPECIES	6	DENND4A (ENSG00000174485)	RAB11A (ENSG00000103769)	MEGF11 (ENSG00000157890)	DIS3L (ENSG00000166938)	TIPIN (ENSG00000075131) #7	MAP2K1 (ENSG00000169032) #9	SNAPC5 (ENSG00000174446) #11	RPL4 (ENSG00000174444) ##12	ZWILCH (ENSG00000174442) #13	LCTL (ENSG00000188501) #14	SMAD6 (ENSG00000137834) #15	SMAD3 (ENSG00000166949) #18	AAGAB (ENSG00000103591) #19	IQCH (ENSG00000103599) #20	C15orf61 (ENSG00000189227) #21	MAP2K5 (ENSG00000137764) #22	SKOR1 (ENSG00000188779) #24	PIAS1 (ENSG00000033800) #25	ENSG00000260007	CALML4 (ENSG00000129007) #26	CLN6 (ENSG00000128973) #27	FEM1B (ENSG00000169018) #28	ITGA11 (ENSG00000137809) #29	CORO2B (ENSG00000103647) #30	ANP32A (ENSG00000140350) #31	SPESP1 (ENSG00000258484) #33	NOX5 (ENSG00000290203)	NOX5 (ENSG00000255346) #34	GLCE (ENSG00000138604) #35	PAQR5 (ENSG00000137819) #36	KIF23 (ENSG00000137807) #37
Gorilla	MODERN SPECIES	6	DIS3L (ENSGGOG00000001549)	TIPIN (ENSGGOG00000000061) #7	ENSGGOG00000024529 #8	MAP2K1 (ENSGGOG00000003687) #9	ENSGGOG00000042752 #10	SNAPC5 (ENSGGOG00000003693) #11	ENSGGOG00000003695 #12	ZWILCH (ENSGGOG00000003703) #13	LCTL (ENSGGOG00000006350) #14	SMAD6 (ENSGGOG00000013002) #15	ENSGGOG00000038329 #16	ENSGGOG00000012045 #17	ENSGGOG00000004714 #19	IQCH (ENSGGOG00000004722) #20	C15orf61 (ENSGGOG00000004732) #21	MAP2K5 (ENSGGOG00000004734) #22	ENSGGOG00000042211 #23	ENSGGOG00000027762	ENSGGOG00000004743 #24	PIAS1 (ENSGGOG00000016852) #25	ENSGGOG00000040187 #26	ENSGGOG00000007834 #26	CLN6 (ENSGGOG00000007840) #27	FEM1B (ENSGGOG00000028408) #28	ITGA11 (ENSGGOG00000013093) #29	CORO2B (ENSGGOG00000013046) #30	ANP32A (ENSGGOG00000015417) #31	CIAPIN1 (ENSGGOG00000039236) #32	SPESP1 (ENSGGOG00000013653) #33	NOX5 (ENSGGOG00000010059) #34	GLCE (ENSGGOG00000016777) #35
Orangutan	MODERN SPECIES	6	MEGF11 (ENSPPYG00000039385)	DIS3L (ENSPPYG00000006575)	TIPIN (ENSPPYG00000031745) #7	MAP2K1 (ENSPPYG00000006576) #9	ENSPPYG00000032290	SNAPC5 (ENSPPYG00000040277) #11	RPL4 (ENSPPYG00000006578) #12	ZWILCH (ENSPPYG00000006579) #13	LCTL (ENSPPYG00000006580) #14	ENSPPYG00000006581 #15	ENSPPYG00000006582 #17	SMAD3 (ENSPPYG00000006583) #18	AAGAB (ENSPPYG00000006584) #19	IQCH (ENSPPYG00000006585) #20	C15orf61 (ENSPPYG00000006586) #21	MAP2K5 (ENSPPYG00000006587) #22	SKOR1 (ENSPPYG00000006588) #24	PIAS1 (ENSPPYG00000006589) #25	ENSPPYG00000006590 #26	CLN6 (ENSPPYG00000006591) #27	FEM1B (ENSPPYG00000032577) #28	ITGA11 (ENSPPYG00000006593) #29	CORO2B (ENSPPYG00000006594) #30	ENSPPYG00000006595 #31	SPESP1 (ENSPPYG00000029816) #33	NOX5 (ENSPPYG00000006596) #34	GLCE (ENSPPYG00000006598) #35	PAQR5 (ENSPPYG00000006599) #36	KIF23 (ENSPPYG00000006600) #37	ENSPPYG00000006601	TLE3 (ENSPPYG00000006602)
Gibbon	MODERN SPECIES	21	RAB11A (ENSNLEG00000012853)	MEGF11 (ENSNLEG00000012863)	DIS3L (ENSNLEG00000012891)	TIPIN (ENSNLEG00000012909) #7	MAP2K1 (ENSNLEG00000012913) #9	SNAPC5 (ENSNLEG00000033124) #11	ENSNLEG00000012938 ##12	ZWILCH (ENSNLEG00000012950) #13	LCTL (ENSNLEG00000012956) #14	SMAD6 (ENSNLEG00000032864) #15	ENSNLEG00000028836 #17	SMAD3 (ENSNLEG00000012983) #18	AAGAB (ENSNLEG00000013006) #19	IQCH (ENSNLEG00000013025) #20	C15orf61 (ENSNLEG00000013065) #21	MAP2K5 (ENSNLEG00000013066) #22	ENSNLEG00000032785 #23	SKOR1 (ENSNLEG00000013091) #24	ENSNLEG00000031759	PIAS1 (ENSNLEG00000013103) #25	ENSNLEG00000013164 #26	CLN6 (ENSNLEG00000013178) #27	FEM1B (ENSNLEG00000013213) #28	ITGA11 (ENSNLEG00000013220) #29	CORO2B (ENSNLEG00000013333) #30	ANP32A (ENSNLEG00000013347) #31	SPESP1 (ENSNLEG00000013404) #33	NOX5 (ENSNLEG00000013408) #34	GLCE (ENSNLEG00000013449) #35	PAQR5 (ENSNLEG00000032338) #36	KIF23 (ENSNLEG00000013478) #37
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00910000147890	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00910000147053	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37
Rhinopithecus	ANCESTRAL SPECIES	49	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00910000147890	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00910000147053	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b
Golden snub-nosed monkey	MODERN SPECIES	1106	TIPIN (ENSRROG00000004107) #7	MAP2K1 (ENSRROG00000034405) #9	SNAPC5 (ENSRROG00000042536) #11	ENSRROG00000036201 ##12	ZWILCH (ENSRROG00000042656) #13	LCTL (ENSRROG00000040652) #14	ENSRROG00000034499	ENSRROG00000009183 #16	ENSRROG00000043245 #15	ENSRROG00000012076	ENSRROG00000003570	SMAD3 (ENSRROG00000024517) #18	AAGAB (ENSRROG00000042217) #19	IQCH (ENSRROG00000023549) #20	C15orf61 (ENSRROG00000026466) #21	MAP2K5 (ENSRROG00000043911) #22	ENSRROG00000000680 #23	SKOR1 (ENSRROG00000040038) #24	PIAS1 (ENSRROG00000029180) #25	CALML4 (ENSRROG00000045323) #26	CLN6 (ENSRROG00000033033) #27	FEM1B (ENSRROG00000030899) #28	ITGA11 (ENSRROG00000032503) #29	CORO2B (ENSRROG00000043899) #30	ANP32A (ENSRROG00000029508) #31	ENSRROG00000028422	SPESP1 (ENSRROG00000031515) #33	NOX5 (ENSRROG00000040374) #34	ENSRROG00000029055	GLCE (ENSRROG00000032908) #35	PAQR5 (ENSRROG00000036465) #36
Black snub-nosed monkey	MODERN SPECIES	1519	MEGF11 (ENSRBIG00000032238)	DIS3L (ENSRBIG00000029360)	TIPIN (ENSRBIG00000035207) #7	MAP2K1 (ENSRBIG00000031516) #9	SNAPC5 (ENSRBIG00000033556) #11	ENSRBIG00000043139 ##12	ZWILCH (ENSRBIG00000043121) #13	ENSRBIG00000038789	LCTL (ENSRBIG00000034724) #14	ENSRBIG00000044058 #16	SMAD6 (ENSRBIG00000039005) #15	SMAD3 (ENSRBIG00000026650) #18	AAGAB (ENSRBIG00000027896) #19	IQCH (ENSRBIG00000037509) #20	C15orf61 (ENSRBIG00000041044) #21	MAP2K5 (ENSRBIG00000042741) #22	SKOR1 (ENSRBIG00000027225) #24	PIAS1 (ENSRBIG00000035465) #25	CALML4 (ENSRBIG00000022837) #26	CLN6 (ENSRBIG00000028123) #27	FEM1B (ENSRBIG00000029847) #28	ITGA11 (ENSRBIG00000032002) #29	CORO2B (ENSRBIG00000035447) #30	ANP32A (ENSRBIG00000032599) #31	SPESP1 (ENSRBIG00000038257) #33	NOX5 (ENSRBIG00000038740) #34	ENSRBIG00000044757	GLCE (ENSRBIG00000039984) #35	PAQR5 (ENSRBIG00000030408) #36	KIF23 (ENSRBIG00000037098) #37	ENSRBIG00000034324
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00910000147053	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37
Vervet Monkey	MODERN SPECIES	18	MEGF11 (ENSCSAG00000013112)	DIS3L (ENSCSAG00000013140)	TIPIN (ENSCSAG00000013176) #7	MAP2K1 (ENSCSAG00000013191) #9	SNAPC5 (ENSCSAG00000013199) #11	ENSCSAG00000013205 ##12	ZWILCH (ENSCSAG00000013218) #13	LCTL (ENSCSAG00000013237) #14	SMAD6 (ENSCSAG00000013248) #15	ENSCSAG00000013271	ENSCSAG00000019736	SMAD3 (ENSCSAG00000013275) #18	AAGAB (ENSCSAG00000013281) #19	IQCH (ENSCSAG00000013352) #20	C15orf61 (ENSCSAG00000013380) #21	MAP2K5 (ENSCSAG00000013397) #22	SKOR1 (ENSCSAG00000013424) #24	PIAS1 (ENSCSAG00000013455) #25	CALML4 (ENSCSAG00000013468) #26	CLN6 (ENSCSAG00000013477) #27	ENSCSAG00000013485	ITGA11 (ENSCSAG00000013505) #29	CORO2B (ENSCSAG00000013518) #30	ANP32A (ENSCSAG00000013528) #31	SPESP1 (ENSCSAG00000013535) #33	NOX5 (ENSCSAG00000013567) #34	GLCE (ENSCSAG00000013585) #35	PAQR5 (ENSCSAG00000013592) #36	KIF23 (ENSCSAG00000013602) #37	ENSCSAG00000013638	TLE3 (ENSCSAG00000013657)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00910000147053	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b.nb
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00910000147053	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b.mb.b
Olive baboon	MODERN SPECIES	17	ENSPANG00000024144	ENSPANG00000046531	DIS3L (ENSPANG00000016671)	TIPIN (ENSPANG00000016672) #7	MAP2K1 (ENSPANG00000016664) #9	SNAPC5 (ENSPANG00000016665) #11	ENSPANG00000016666 ##12	ZWILCH (ENSPANG00000016646) #13	LCTL (ENSPANG00000016647) #14	SMAD6 (ENSPANG00000016648) #15	ENSPANG00000016626	SMAD3 (ENSPANG00000016627) #18	AAGAB (ENSPANG00000016628) #19	IQCH (ENSPANG00000016625) #20	C15orf61 (ENSPANG00000016591) #21	MAP2K5 (ENSPANG00000016592) #22	SKOR1 (ENSPANG00000016593) #24	ENSPANG00000043681	PIAS1 (ENSPANG00000016583) #25	CALML4 (ENSPANG00000016584) #26	CLN6 (ENSPANG00000016585) #27	ENSPANG00000037059	FEM1B (ENSPANG00000016581) #28	ITGA11 (ENSPANG00000016582) #29	CORO2B (ENSPANG00000016540) #30	ENSPANG00000048171	ANP32A (ENSPANG00000016536) #31	SPESP1 (ENSPANG00000016524) #33	NOX5 (ENSPANG00000016528) #34	ENSPANG00000043271	ENSPANG00000050078
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00910000147053	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b.mb.b
Drill	MODERN SPECIES	253	DIS3L (ENSMLEG00000034558)	TIPIN (ENSMLEG00000031419) #7	MAP2K1 (ENSMLEG00000034124) #9	SNAPC5 (ENSMLEG00000044262) #11	ENSMLEG00000043250 ##12	ZWILCH (ENSMLEG00000031789) #13	LCTL (ENSMLEG00000011538) #14	ENSMLEG00000036582 #16	ENSMLEG00000039010	ENSMLEG00000033311 #17	ENSMLEG00000039372 #17	SMAD3 (ENSMLEG00000032633) #18	AAGAB (ENSMLEG00000042581) #19	IQCH (ENSMLEG00000008461) #20	C15orf61 (ENSMLEG00000044432) #21	MAP2K5 (ENSMLEG00000032952) #22	SKOR1 (ENSMLEG00000033424) #24	PIAS1 (ENSMLEG00000042488) #25	CALML4 (ENSMLEG00000034518) #26	CLN6 (ENSMLEG00000031755) #27	FEM1B (ENSMLEG00000031589) #28	ITGA11 (ENSMLEG00000034075) #29	CORO2B (ENSMLEG00000034024) #30	ANP32A (ENSMLEG00000028255) #31	SPESP1 (ENSMLEG00000035603) #33	NOX5 (ENSMLEG00000025119) #34	ENSMLEG00000026060	GLCE (ENSMLEG00000000746) #35	PAQR5 (ENSMLEG00000039613) #36	KIF23 (ENSMLEG00000005210) #37	ENSMLEG00000024166
Sooty mangabey	MODERN SPECIES	336	DIS3L (ENSCATG00000044661)	TIPIN (ENSCATG00000040328) #7	MAP2K1 (ENSCATG00000038127) #9	SNAPC5 (ENSCATG00000029571) #11	ENSCATG00000031544 ##12	ZWILCH (ENSCATG00000036836) #13	LCTL (ENSCATG00000033622) #14	ENSCATG00000019079 #16	SMAD6 (ENSCATG00000002013) #15	ENSCATG00000035445	ENSCATG00000000879	SMAD3 (ENSCATG00000009733) #18	AAGAB (ENSCATG00000043588) #19	IQCH (ENSCATG00000042766) #20	C15orf61 (ENSCATG00000012736) #21	MAP2K5 (ENSCATG00000040709) #22	SKOR1 (ENSCATG00000011653) #24	PIAS1 (ENSCATG00000010291) #25	CALML4 (ENSCATG00000040034) #26	CLN6 (ENSCATG00000003907) #27	FEM1B (ENSCATG00000044684) #28	ITGA11 (ENSCATG00000030599) #29	CORO2B (ENSCATG00000040950) #30	ENSCATG00000024063	ANP32A (ENSCATG00000031468) #31	SPESP1 (ENSCATG00000044425) #33	NOX5 (ENSCATG00000036564) #34	ENSCATG00000031394	GLCE (ENSCATG00000035030) #35	PAQR5 (ENSCATG00000031384) #36	KIF23 (ENSCATG00000041003) #37
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l #32	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00910000147053	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.g.a #7	ENSGT00940000153487.b.b.i.a #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.a.a.a	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b.nb
Crab-eating macaque	MODERN SPECIES	17	MEGF11 (ENSMFAG00000038247)	DIS3L (ENSMFAG00000035628)	TIPIN (ENSMFAG00000031924) #7	MAP2K1 (ENSMFAG00000036522) ##9	ENSMFAG00000063036	SNAPC5 (ENSMFAG00000046383) #11	RPL4 (ENSMFAG00000036412) ##12	ZWILCH (ENSMFAG00000036529) #13	LCTL (ENSMFAG00000000458) #14	ENSMFAG00000037066 #16	ENSMFAG00000062655	SMAD3 (ENSMFAG00000001781) #18	AAGAB (ENSMFAG00000040550) #19	IQCH (ENSMFAG00000001124) #20	C15orf61 (ENSMFAG00000053739) #21	MAP2K5 (ENSMFAG00000030100) #22	SKOR1 (ENSMFAG00000001347) #24	PIAS1 (ENSMFAG00000038832) #25	CLN6 (ENSMFAG00000042975) #27	CALML4 (ENSMFAG00000036145) #26	FEM1B (ENSMFAG00000064469) #28	ITGA11 (ENSMFAG00000001090) #29	CORO2B (ENSMFAG00000030894) #30	ANP32A (ENSMFAG00000043083) #31	ENSMFAG00000050608	SPESP1 (ENSMFAG00000043000) #33	NOX5 (ENSMFAG00000000728) #34	ENSMFAG00000063916	GLCE (ENSMFAG00000045812) #35	ENSMFAG00000059741	PAQR5 (ENSMFAG00000040350) #36
Rhesus	MODERN SPECIES	17	DIS3L (ENSMMUG00000003693)	TIPIN (ENSMMUG00000003695) #7	MAP2K1 (ENSMMUG00000016840) #9	SNAPC5 (ENSMMUG00000060148) #11	RPL4 (ENSMMUG00000016844) ##12	ZWILCH (ENSMMUG00000029588) #13	LCTL (ENSMMUG00000017447) #14	ENSMMUG00000063378	SMAD6 (ENSMMUG00000019018) #15	ENSMMUG00000057696	SMAD3 (ENSMMUG00000015455) #18	ENSMMUG00000051534	AAGAB (ENSMMUG00000041415) #19	IQCH (ENSMMUG00000015458) #20	C7H15orf61 (ENSMMUG00000060549) #21	MAP2K5 (ENSMMUG00000014482) #22	SKOR1 (ENSMMUG00000014485) #24	PIAS1 (ENSMMUG00000011699) #25	CLN6 (ENSMMUG00000011703) #27	FEM1B (ENSMMUG00000008311) #28	ITGA11 (ENSMMUG00000004026) #29	CORO2B (ENSMMUG00000006356) #30	ANP32A (ENSMMUG00000022717) #31	ENSMMUG00000064021	SPESP1 (ENSMMUG00000063939) #33	NOX5 (ENSMMUG00000006230) #34	ENSMMUG00000063948	ENSMMUG00000063000	GLCE (ENSMMUG00000021364) #35	PAQR5 (ENSMMUG00000014886) #36	KIF23 (ENSMMUG00000014887) #37
Pig-tailed macaque	MODERN SPECIES	77	DIS3L (ENSMNEG00000035066)	TIPIN (ENSMNEG00000031947) #7	MAP2K1 (ENSMNEG00000027299) #9	SNAPC5 (ENSMNEG00000032504) #11	ENSMNEG00000027886 ##12	ZWILCH (ENSMNEG00000034955) #13	LCTL (ENSMNEG00000002923) #14	ENSMNEG00000031888 #16	SMAD6 (ENSMNEG00000034598) #15	ENSMNEG00000032567	ENSMNEG00000030486	SMAD3 (ENSMNEG00000033094) #18	AAGAB (ENSMNEG00000040056) #19	IQCH (ENSMNEG00000034386) #20	C15orf61 (ENSMNEG00000034192) #21	MAP2K5 (ENSMNEG00000043681) #22	SKOR1 (ENSMNEG00000032875) #24	PIAS1 (ENSMNEG00000030278) #25	CALML4 (ENSMNEG00000033193) #26	CLN6 (ENSMNEG00000034743) #27	FEM1B (ENSMNEG00000033491) #28	ITGA11 (ENSMNEG00000031314) #29	CORO2B (ENSMNEG00000028626) #30	ANP32A (ENSMNEG00000043179) #31	ENSMNEG00000038547 #32	SPESP1 (ENSMNEG00000024286) #33	NOX5 (ENSMNEG00000032218) #34	ENSMNEG00000024626	GLCE (ENSMNEG00000039663) #35	PAQR5 (ENSMNEG00000008177) #36	KIF23 (ENSMNEG00000028825) #37
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.g.a.a #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00910000147890	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000011417.l.b #32	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Cebidae	ANCESTRAL SPECIES	29	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00940000170330	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00910000147890	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.ub #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Marmoset	MODERN SPECIES	1	MEGF11 (ENSCJAG00000007353)	DIS3L (ENSCJAG00000007411)	ENSCJAG00000085355	MAP2K1 (ENSCJAG00000007460) #9	SNAPC5 (ENSCJAG00000070895) #11	ENSCJAG00000007491 ##12	ZWILCH (ENSCJAG00000007524) #13	LCTL (ENSCJAG00000007558) #14	SMAD6 (ENSCJAG00000044644) #15	SMAD3 (ENSCJAG00000002088) #18	AAGAB (ENSCJAG00000002113) #19	IQCH (ENSCJAG00000002130) #20	ENSCJAG00000051609	ENSCJAG00000073121	C15orf61 (ENSCJAG00000054412) #21	MAP2K5 (ENSCJAG00000002156) #22	SKOR1 (ENSCJAG00000002196) #24	PIAS1 (ENSCJAG00000002224) #25	CALML4 (ENSCJAG00000002243) #26	ENSCJAG00000002250 #27	ENSCJAG00000074396	FEM1B (ENSCJAG00000002264) #28	ITGA11 (ENSCJAG00000002269) #29	CORO2B (ENSCJAG00000002319) #30	ENSCJAG00000086993	ENSCJAG00000002339 #31	SPESP1 (ENSCJAG00000008560) #33	GLCE (ENSCJAG00000007136) #35	PAQR5 (ENSCJAG00000042293) #36	ENSCJAG00000023295	KIF23 (ENSCJAG00000007038) #37
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a.a.a ##12	ENSGT00390000013696 #13	ENSGT00910000147890	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b.tb ##31	ENSGT01020000230346.C.c.b.a.b.a.b	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Bolivian squirrel monkey	MODERN SPECIES	76					MAP2K1 (ENSSBOG00000023083) #9	SNAPC5 (ENSSBOG00000028815) #11	ENSSBOG00000015863 ##12	ZWILCH (ENSSBOG00000033149) #13	ENSSBOG00000031231	LCTL (ENSSBOG00000023227) #14	ENSSBOG00000022363 #15	SMAD3 (ENSSBOG00000020894) #18	AAGAB (ENSSBOG00000035741) #19	IQCH (ENSSBOG00000024935) #20	C15orf61 (ENSSBOG00000022188) #21	MAP2K5 (ENSSBOG00000028179) #22	SKOR1 (ENSSBOG00000031705) #24	ENSSBOG00000032111	PIAS1 (ENSSBOG00000030212) #25	CALML4 (ENSSBOG00000031073) #26	CLN6 (ENSSBOG00000035779) #27	FEM1B (ENSSBOG00000030419) #28	ITGA11 (ENSSBOG00000030635) #29	CORO2B (ENSSBOG00000019665) #30	ANP32A (ENSSBOG00000030699) #31	ENSSBOG00000020197 #32	ENSSBOG00000025043	SPESP1 (ENSSBOG00000021264) #33	GLCE (ENSSBOG00000023147) #35	PAQR5 (ENSSBOG00000033866) #36	KIF23 (ENSSBOG00000020139) #37
Capuchin	MODERN SPECIES	710													IQCH (ENSCCAG00000030855) #20	ENSCCAG00000023422	C15orf61 (ENSCCAG00000029881) #21	MAP2K5 (ENSCCAG00000029903) #22	ENSCCAG00000029644 #23
Mas night monkey	MODERN SPECIES	1197	DMAC1 (ENSANAG00000029014)	ENSANAG00000033377	KDM4C (ENSANAG00000024798)	GLDC (ENSANAG00000034753)	UHRF2 (ENSANAG00000025453)	ENSANAG00000028396	ENSANAG00000024963 #16	SMAD6 (ENSANAG00000020717) #15	SMAD3 (ENSANAG00000001462) #18	ENSANAG00000031752	AAGAB (ENSANAG00000038049) #19	ENSANAG00000037777	IQCH (ENSANAG00000037205) #20	C15orf61 (ENSANAG00000019347) #21	ENSANAG00000033304 #23	MAP2K5 (ENSANAG00000026610) #22	SKOR1 (ENSANAG00000026767) #24	PIAS1 (ENSANAG00000023771) #25	CALML4 (ENSANAG00000036088) #26	ENSANAG00000035306	ENSANAG00000022199	CLN6 (ENSANAG00000031462) #27	FEM1B (ENSANAG00000036003) #28	ITGA11 (ENSANAG00000024399) #29	CORO2B (ENSANAG00000035767) #30	ENSANAG00000026447 ##31	ENSANAG00000020559 #32	SPESP1 (ENSANAG00000030363) #33	GLCE (ENSANAG00000035686) #35	PAQR5 (ENSANAG00000036280) #36	KIF23 (ENSANAG00000035932) #37
Tarsier	MODERN SPECIES	1316												SMAD3 (ENSTSYG00000025697) #18	AAGAB (ENSTSYG00000010466) #19	IQCH (ENSTSYG00000010472) #20	CUNH15orf61 (ENSTSYG00000014554) #21	MAP2K5 (ENSTSYG00000013834) #22
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Bushbaby	MODERN SPECIES	126	DIS3L (ENSOGAG00000024086)	ENSOGAG00000028488 #7	MAP2K1 (ENSOGAG00000015876) #9	SNAPC5 (ENSOGAG00000015881) #11	ENSOGAG00000015884 ##12	ZWILCH (ENSOGAG00000015886) #13	LCTL (ENSOGAG00000015893) #14	SMAD6 (ENSOGAG00000015387) #15	ENSOGAG00000034467	ENSOGAG00000029245	SMAD3 (ENSOGAG00000014217) #18	AAGAB (ENSOGAG00000014219) #19	IQCH (ENSOGAG00000014224) #20	ENSOGAG00000028206	C15orf61 (ENSOGAG00000027440) #21	MAP2K5 (ENSOGAG00000002480) #22	SKOR1 (ENSOGAG00000025983) #24	PIAS1 (ENSOGAG00000014134) #25	CALML4 (ENSOGAG00000014140) #26	CLN6 (ENSOGAG00000014142) #27	FEM1B (ENSOGAG00000014143) #28	ITGA11 (ENSOGAG00000014144) #29	CORO2B (ENSOGAG00000026008) #30	ENSOGAG00000003058 #31	GLCE (ENSOGAG00000029673) #35	PAQR5 (ENSOGAG00000012036) #36	KIF23 (ENSOGAG00000034448) #37	RPLP1 (ENSOGAG00000029641)	TLE3 (ENSOGAG00000004789)	UACA (ENSOGAG00000006940)	LARP6 (ENSOGAG00000000522)
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.cb.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Mouse lemur	MODERN SPECIES	22	ENSMICG00000038169	ALDH1A2 (ENSMICG00000006105)	AQP9 (ENSMICG00000038252)	POLR2M (ENSMICG00000047017)	MYZAP (ENSMICG00000012910)	CGNL1 (ENSMICG00000002354)	TCF12 (ENSMICG00000009110)	ZNF280D (ENSMICG00000013140)	MNS1 (ENSMICG00000002649)	TEX9 (ENSMICG00000028185)	RFX7 (ENSMICG00000000614)	NEDD4 (ENSMICG00000037350)	ENSMICG00000010451	ENSMICG00000045671	C15orf61 (ENSMICG00000046601) #21	MAP2K5 (ENSMICG00000006137) #22	SKOR1 (ENSMICG00000006148) #24	PIAS1 (ENSMICG00000016982) #25	CALML4 (ENSMICG00000042372) #26	CLN6 (ENSMICG00000016990) #27	FEM1B (ENSMICG00000028605) #28	ITGA11 (ENSMICG00000001504) #29	CORO2B (ENSMICG00000001523) #30	ENSMICG00000038351 #31	ENSMICG00000043092	SPESP1 (ENSMICG00000045479) #33	GLCE (ENSMICG00000044587) #35	PAQR5 (ENSMICG00000012222) #36	KIF23 (ENSMICG00000012227) #37	RPLP1 (ENSMICG00000036579)	TLE3 (ENSMICG00000002321)
Lemuriformes_a	ANCESTRAL SPECIES	197												ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37
Greater bamboo lemur	MODERN SPECIES	313										SMAD6 (ENSPSMG00000000845) #15	ENSPSMG00000000854	SMAD3 (ENSPSMG00000001058) #18	AAGAB (ENSPSMG00000001327) #19	IQCH (ENSPSMG00000001397) #20	C15orf61 (ENSPSMG00000001411) #21	MAP2K5 (ENSPSMG00000001626) #22	SKOR1 (ENSPSMG00000001884) #24	ENSPSMG00000001902	PIAS1 (ENSPSMG00000001932) #25	CALML4 (ENSPSMG00000001943) #26	CLN6 (ENSPSMG00000002045) #27	FEM1B (ENSPSMG00000002150) #28	ITGA11 (ENSPSMG00000002246) #29	CORO2B (ENSPSMG00000002320) #30	ENSPSMG00000002406 #31	SPESP1 (ENSPSMG00000002424) #33	GLCE (ENSPSMG00000002447) #35	PAQR5 (ENSPSMG00000002489) #36	KIF23 (ENSPSMG00000002749) #37	RPLP1 (ENSPSMG00000003344)	ENSPSMG00000003349
Coquerels sifaka	MODERN SPECIES	733												SMAD3 (ENSPCOG00000023000) #18	AAGAB (ENSPCOG00000016985) #19	IQCH (ENSPCOG00000021949) #20	C15orf61 (ENSPCOG00000018275) #21	MAP2K5 (ENSPCOG00000020293) #22	SKOR1 (ENSPCOG00000016399) #24
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Tree shrew	MODERN SPECIES	1796																MAP2K5 (ENSTBEG00000003278) #22
Glires	ANCESTRAL SPECIES	15	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Kangaroo rat	MODERN SPECIES	330	ENSDORG00000026125	Megf11 (ENSDORG00000001008)	Dis3l (ENSDORG00000014909)	Tipin (ENSDORG00000028988) #7	Map2k1 (ENSDORG00000001301) #9	Snapc5 (ENSDORG00000030051) #11	Rpl4 (ENSDORG00000016287) #12	Zwilch (ENSDORG00000016288) #13	Lctl (ENSDORG00000016291) #14	Smad6 (ENSDORG00000028234) #15	ENSDORG00000026894	Smad3 (ENSDORG00000029949) #18	ENSDORG00000026611 #19	Iqch (ENSDORG00000006468) #20	2300009A05Rik (ENSDORG00000028687) #21	Map2k5 (ENSDORG00000005673) #22	Skor1 (ENSDORG00000005677) #24
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Lesser Egyptian jerboa	MODERN SPECIES	92	ENSJJAG00000015445	Megf11 (ENSJJAG00000023890)	ENSJJAG00000019234	Dis3l (ENSJJAG00000016147)	Tipin (ENSJJAG00000017947) #7	Map2k1 (ENSJJAG00000021452) #9	Snapc5 (ENSJJAG00000022013) #11	ENSJJAG00000013677 #12	Zwilch (ENSJJAG00000010189) #13	Lctl (ENSJJAG00000013579) #14	Smad6 (ENSJJAG00000019623) #15	Smad3 (ENSJJAG00000021414) #18	ENSJJAG00000018312 #19	Iqch (ENSJJAG00000024416) #20	2300009A05Rik (ENSJJAG00000019436) #21	Map2k5 (ENSJJAG00000024208) #22	Skor1 (ENSJJAG00000003624) #24	ENSJJAG00000019728 #25	Calml4 (ENSJJAG00000014113) #26	Cln6 (ENSJJAG00000024405) #27	Fem1b (ENSJJAG00000018686) #28	Itga11 (ENSJJAG00000007244) #29	Coro2b (ENSJJAG00000003058) #30	Anp32a (ENSJJAG00000019278) #31
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Rab11a (ENSNGAG00000013726)	Megf11 (ENSNGAG00000011352)	Dis3l (ENSNGAG00000017008)	Tipin (ENSNGAG00000018237) #7	Map2k1 (ENSNGAG00000006894) #9	Snapc5 (ENSNGAG00000006133) #11	ENSNGAG00000006653 #12	Zwilch (ENSNGAG00000016626) #13	Lctl (ENSNGAG00000012911) #14	Smad6 (ENSNGAG00000021223) #15	ENSNGAG00000022756	Smad3 (ENSNGAG00000023535) #18	ENSNGAG00000010708 #19	Iqch (ENSNGAG00000019505) #20	2300009A05Rik (ENSNGAG00000004715) #21	Map2k5 (ENSNGAG00000011076) #22	Skor1 (ENSNGAG00000020060) #24	Pias1 (ENSNGAG00000022735) #25	Calml4 (ENSNGAG00000016088) #26	Cln6 (ENSNGAG00000023832) #27	ENSNGAG00000021620 #28	Itga11 (ENSNGAG00000024101) #29	Coro2b (ENSNGAG00000024331) #30	ENSNGAG00000017524 #31	ENSNGAG00000005322 #31	Spesp1 (ENSNGAG00000012498) #33	Glce (ENSNGAG00000014759) #35	Paqr5 (ENSNGAG00000002130) #36	Kif23 (ENSNGAG00000011309) #37	ENSNGAG00000011139	Tle3 (ENSNGAG00000018146)
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.kb #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Golden Hamster	MODERN SPECIES	672	Slc24a1 (ENSMAUG00000012813)	Dennd4a (ENSMAUG00000018527)	Rab11a (ENSMAUG00000018551)	Megf11 (ENSMAUG00000003129)	Dis3l (ENSMAUG00000008265)	Tipin (ENSMAUG00000012421) #7	Map2k1 (ENSMAUG00000011379) #9	Snapc5 (ENSMAUG00000008645) #11	Rpl4 (ENSMAUG00000018867) #12	Zwilch (ENSMAUG00000021210) #13	Lctl (ENSMAUG00000009957) #14	Smad6 (ENSMAUG00000009859) #15	Smad3 (ENSMAUG00000022258) #18	Aagab (ENSMAUG00000005383) #19	Iqch (ENSMAUG00000004333) #20	Map2k5 (ENSMAUG00000015370) #22	Skor1 (ENSMAUG00000020780) #24	Pias1 (ENSMAUG00000000785) #25	Calml4 (ENSMAUG00000015006) #26	Cln6 (ENSMAUG00000009546) #27	Itga11 (ENSMAUG00000002222) #29	Coro2b (ENSMAUG00000009618) #30	Anp32a (ENSMAUG00000000632) #31	Spesp1 (ENSMAUG00000008837) #33	Glce (ENSMAUG00000013447) #35	Paqr5 (ENSMAUG00000009377) #36	Kif23 (ENSMAUG00000009848) #37	ENSMAUG00000007063	ENSMAUG00000008843	Tle3 (ENSMAUG00000012643)	Uaca (ENSMAUG00000018335)
Chinese hamster chok1gshd	MODERN SPECIES	284	Slc24a1 (ENSCGRG00001023812)	Dennd4a (ENSCGRG00001019979)	Rab11a (ENSCGRG00001023313)	Megf11 (ENSCGRG00001019210)	Dis3l (ENSCGRG00001017825)	Tipin (ENSCGRG00001018146) #7	Snapc5 (ENSCGRG00001013968) #11	Zwilch (ENSCGRG00001018206) #13	Lctl (ENSCGRG00001017716) #14	Smad6 (ENSCGRG00001002733) #15	Smad3 (ENSCGRG00001013999) #18	Aagab (ENSCGRG00001020082) #19	Iqch (ENSCGRG00001006084) #20	ENSCGRG00001000811	2300009A05Rik (ENSCGRG00001009275) #21	Map2k5 (ENSCGRG00001024707) #22	Skor1 (ENSCGRG00001000300) #24	Pias1 (ENSCGRG00001018818) #25	Calml4 (ENSCGRG00001023410) #26	Cln6 (ENSCGRG00001016348) #27	Fem1b (ENSCGRG00001018487) #28	Itga11 (ENSCGRG00001016586) #29	Coro2b (ENSCGRG00001025051) #30	ENSCGRG00001022637 #31	Spesp1 (ENSCGRG00001015906) #33	Glce (ENSCGRG00001019156) #35	Paqr5 (ENSCGRG00001021586) #36	Kif23 (ENSCGRG00001024682) #37	ENSCGRG00001022135	Tle3 (ENSCGRG00001024081)	Uaca (ENSCGRG00001000355)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Northern American deer mouse	MODERN SPECIES	20	ENSPEMG00000021125	Megf11 (ENSPEMG00000017797)	Dis3l (ENSPEMG00000001213)	Tipin (ENSPEMG00000002370) #7	Map2k1 (ENSPEMG00000007282) #9	Snapc5 (ENSPEMG00000007852) #11	Rpl4 (ENSPEMG00000012064) #12	Zwilch (ENSPEMG00000014485) #13	Lctl (ENSPEMG00000016229) #14	Smad6 (ENSPEMG00000017040) #15	Smad3 (ENSPEMG00000028676) #18	Aagab (ENSPEMG00000018465) #19	ENSPEMG00000028831	Iqch (ENSPEMG00000005753) #20	2300009A05Rik (ENSPEMG00000009306) #21	Map2k5 (ENSPEMG00000010361) #22	Skor1 (ENSPEMG00000010499) #24	Pias1 (ENSPEMG00000012119) #25	Calml4 (ENSPEMG00000012833) #26	Cln6 (ENSPEMG00000030484) #27	ENSPEMG00000000682	Fem1b (ENSPEMG00000028410) #28	Itga11 (ENSPEMG00000014149) #29	Coro2b (ENSPEMG00000016326) #30	Anp32a (ENSPEMG00000017392) #31	ENSPEMG00000017757 #33	Glce (ENSPEMG00000030703) #35	Paqr5 (ENSPEMG00000016716) #36	Kif23 (ENSPEMG00000018508) #37	ENSPEMG00000000345	ENSPEMG00000026526
Prairie vole	MODERN SPECIES	13	Dennd4a (ENSMOCG00000008521)	Rab11a (ENSMOCG00000021138)	Megf11 (ENSMOCG00000003573)	Dis3l (ENSMOCG00000005278)	Tipin (ENSMOCG00000010343) #7	Map2k1 (ENSMOCG00000013072) #9	Snapc5 (ENSMOCG00000015348) #11	ENSMOCG00000021901 #12	Zwilch (ENSMOCG00000017159) #13	Lctl (ENSMOCG00000004744) #14	Smad6 (ENSMOCG00000014458) #15	Smad3 (ENSMOCG00000018490) #18	Aagab (ENSMOCG00000021340) #19	Iqch (ENSMOCG00000016873) #20	2300009A05Rik (ENSMOCG00000013991) #21	Map2k5 (ENSMOCG00000022058) #22	Skor1 (ENSMOCG00000018261) #24	ENSMOCG00000019235	Pias1 (ENSMOCG00000022074) #25	Calml4 (ENSMOCG00000018493) #26	Cln6 (ENSMOCG00000021992) #27	Fem1b (ENSMOCG00000005442) #28	Itga11 (ENSMOCG00000003119) #29	Coro2b (ENSMOCG00000011097) #30	ENSMOCG00000004428 #31	ENSMOCG00000014776 #31	Spesp1 (ENSMOCG00000016907) #33	Glce (ENSMOCG00000019169) #35	Paqr5 (ENSMOCG00000009266) #36	Kif23 (ENSMOCG00000008773) #37	ENSMOCG00000008158
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01050000248351	ENSGT01030000234519.e.b
Rat	MODERN SPECIES	18	LOC120094392 (ENSRNOG00000071140)	Rab11a (ENSRNOG00000011302)	Megf11 (ENSRNOG00000010634)	Dis3l (ENSRNOG00000010537)	Tipin (ENSRNOG00000043068) #7	Map2k1 (ENSRNOG00000010176) #9	Rpl4 (ENSRNOG00000009378) #12	Zwilch (ENSRNOG00000009303) #13	Lctl (ENSRNOG00000009193) #14	Smad6 (ENSRNOG00000009173) #15	Smad3 (ENSRNOG00000008620) #18	Aagab (ENSRNOG00000008424) #19	Iqch (ENSRNOG00000008353) #20	C8h15orf61 (ENSRNOG00000008340) #21	AC132740.1 (ENSRNOG00000054780)	Map2k5 (ENSRNOG00000007926) #22	Skor1 (ENSRNOG00000013959) #24	Pias1 (ENSRNOG00000034272) #25	Calml4 (ENSRNOG00000038202) #26	Cln6 (ENSRNOG00000007164) #27	Fem1b (ENSRNOG00000007077) #28	Itga11 (ENSRNOG00000006723) #29	Coro2b (ENSRNOG00000015257) #30	Anp32a (ENSRNOG00000014846) #31	Spesp1 (ENSRNOG00000025359) #33	Glce (ENSRNOG00000025372) #35	Paqr5 (ENSRNOG00000014164) #36	Kif23 (ENSRNOG00000014080) #37	Rplp1 (ENSRNOG00000013874)	ENSRNOG00000070150	Tle3 (ENSRNOG00000013013)
Mus	ANCESTRAL SPECIES	4	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01050000248351	ENSGT01030000234519.e.b
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b.t.b	ENSGT01050000248351	ENSGT01030000234519.e.b
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859.e.b #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b.t.b	ENSGT01050000248351	ENSGT01030000234519.e.b
Mouse	MODERN SPECIES	18	Rab11a (ENSMUSG00000004771)	Megf11 (ENSMUSG00000036466)	Dis3l (ENSMUSG00000032396)	Tipin (ENSMUSG00000032397) #7	Uchl4 (ENSMUSG00000035337)	Map2k1 (ENSMUSG00000004936) #9	Snapc5 (ENSMUSG00000032398) #11	Rpl4 (ENSMUSG00000032399) #12	Zwilch (ENSMUSG00000032400) #13	Lctl (ENSMUSG00000032401) #14	Smad6 (ENSMUSG00000036867) #15	Smad3 (ENSMUSG00000032402) #18	Aagab (ENSMUSG00000037257) #19	Iqch (ENSMUSG00000037801) #20	2300009A05Rik (ENSMUSG00000032403) #21	Map2k5 (ENSMUSG00000058444) #22	Skor1 (ENSMUSG00000022245) #24	Pias1 (ENSMUSG00000032405) #25	Calml4 (ENSMUSG00000032246) #26	Cln6 (ENSMUSG00000032245) #27	Fem1b (ENSMUSG00000032244) #28	Itga11 (ENSMUSG00000032243) #29	Coro2b (ENSMUSG00000041729) #30	Anp32a (ENSMUSG00000032249) #31	Spesp1 (ENSMUSG00000046846) #33	Glce (ENSMUSG00000032252) #35	Paqr5 (ENSMUSG00000032278) #36	Kif23 (ENSMUSG00000032254) #37	Rplp1 (ENSMUSG00000007892)	Tle3 (ENSMUSG00000032280)	Uaca (ENSMUSG00000034485)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859.e.b #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b.t.b	ENSGT01050000248351	ENSGT01030000234519.e.b
Steppe mouse	MODERN SPECIES	3365	Uchl4 (ENSMSIG00000004289)	Map2k1 (ENSMSIG00000004246) #9	Snapc5 (ENSMSIG00000004231) #11	Rpl4 (ENSMSIG00000004124) #12	Zwilch (ENSMSIG00000003872) #13	Lctl (ENSMSIG00000003776) #14	ENSMSIG00000003769	ENSMSIG00000003749	Smad6 (ENSMSIG00000003718) #15	ENSMSIG00000003710	Smad3 (ENSMSIG00000003679) #18	Aagab (ENSMSIG00000003642) #19	ENSMSIG00000003630	Iqch (ENSMSIG00000002651) #20	2300009A05Rik (ENSMSIG00000002599) #21	Map2k5 (ENSMSIG00000002321) #22	Skor1 (ENSMSIG00000002179) #24	Pias1 (ENSMSIG00000002027) #25	ENSMSIG00000001996 #26	Cln6 (ENSMSIG00000001974) #27	Fem1b (ENSMSIG00000001951) #28	Itga11 (ENSMSIG00000001884) #29	Coro2b (ENSMSIG00000001799) #30	ENSMSIG00000001693 #31	Spesp1 (ENSMSIG00000001679) #33	Glce (ENSMSIG00000001614) #35	Paqr5 (ENSMSIG00000001567) #36	Kif23 (ENSMSIG00000001335) #37	ENSMSIG00000001298	ENSMSIG00000001284	Tle3 (ENSMSIG00000000432)
spretus	MODERN SPECIES	18	Rab11a (MGP_SPRETEiJ_G0033485)	Megf11 (MGP_SPRETEiJ_G0033484)	Dis3l (MGP_SPRETEiJ_G0033483)	Tipin (MGP_SPRETEiJ_G0033482) #7	MGP_SPRETEiJ_G0033481	Map2k1 (MGP_SPRETEiJ_G0033480) #9	Snapc5 (MGP_SPRETEiJ_G0033479) #11	Rpl4 (MGP_SPRETEiJ_G0033478) #12	Zwilch (MGP_SPRETEiJ_G0033477) #13	Lctl (MGP_SPRETEiJ_G0033476) #14	Smad6 (MGP_SPRETEiJ_G0033475) #15	Smad3 (MGP_SPRETEiJ_G0033474) #18	Aagab (MGP_SPRETEiJ_G0033473) #19	Iqch (MGP_SPRETEiJ_G0033472) #20	2300009A05Rik (MGP_SPRETEiJ_G0033471) #21	Map2k5 (MGP_SPRETEiJ_G0033470) #22	Skor1 (MGP_SPRETEiJ_G0033469) #24	Pias1 (MGP_SPRETEiJ_G0033468) #25	Calml4 (MGP_SPRETEiJ_G0033467) #26	MGP_SPRETEiJ_G0033466	Cln6 (MGP_SPRETEiJ_G0033465) #27	Fem1b (MGP_SPRETEiJ_G0033464) #28	Itga11 (MGP_SPRETEiJ_G0033463) #29	Coro2b (MGP_SPRETEiJ_G0033462) #30	Anp32a (MGP_SPRETEiJ_G0033461) #31	Spesp1 (MGP_SPRETEiJ_G0033460) #33	Glce (MGP_SPRETEiJ_G0033459) #35	Paqr5 (MGP_SPRETEiJ_G0033458) #36	Kif23 (MGP_SPRETEiJ_G0033457) #37	Rplp1 (MGP_SPRETEiJ_G0033456)	Tle3 (MGP_SPRETEiJ_G0033455)
Ryukyu mouse	MODERN SPECIES	18	Rab11a (MGP_CAROLIEiJ_G0032346)	Megf11 (MGP_CAROLIEiJ_G0032345)	Dis3l (MGP_CAROLIEiJ_G0032344)	Tipin (MGP_CAROLIEiJ_G0032343) #7	MGP_CAROLIEiJ_G0032342	Map2k1 (MGP_CAROLIEiJ_G0032341) #9	Snapc5 (MGP_CAROLIEiJ_G0032340) #11	Rpl4 (MGP_CAROLIEiJ_G0032339) #12	Zwilch (MGP_CAROLIEiJ_G0032338) #13	Lctl (MGP_CAROLIEiJ_G0032337) #14	Smad6 (MGP_CAROLIEiJ_G0032336) #15	Smad3 (MGP_CAROLIEiJ_G0032335) #18	Aagab (MGP_CAROLIEiJ_G0032334) #19	Iqch (MGP_CAROLIEiJ_G0032333) #20	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #21	Map2k5 (MGP_CAROLIEiJ_G0032331) #22	Skor1 (MGP_CAROLIEiJ_G0032330) #24	Pias1 (MGP_CAROLIEiJ_G0032329) #25	Calml4 (MGP_CAROLIEiJ_G0032328) #26	Cln6 (MGP_CAROLIEiJ_G0032327) #27	Fem1b (MGP_CAROLIEiJ_G0032326) #28	Itga11 (MGP_CAROLIEiJ_G0032325) #29	Coro2b (MGP_CAROLIEiJ_G0032324) #30	Anp32a (MGP_CAROLIEiJ_G0032323) #31	Spesp1 (MGP_CAROLIEiJ_G0032322) #33	Glce (MGP_CAROLIEiJ_G0032321) #35	Paqr5 (MGP_CAROLIEiJ_G0032320) #36	Kif23 (MGP_CAROLIEiJ_G0032319) #37	Rplp1 (MGP_CAROLIEiJ_G0032318)	Tle3 (MGP_CAROLIEiJ_G0032317)	MGP_CAROLIEiJ_G0032316
Shrew mouse	MODERN SPECIES	1	Slc24a1 (MGP_PahariEiJ_G0015213)	Dennd4a (MGP_PahariEiJ_G0015212)	Rab11a (MGP_PahariEiJ_G0015211)	Megf11 (MGP_PahariEiJ_G0015210)	Dis3l (MGP_PahariEiJ_G0015209)	Tipin (MGP_PahariEiJ_G0015208) #7	Map2k1 (MGP_PahariEiJ_G0015207) #9	Snapc5 (MGP_PahariEiJ_G0015206) #11	Rpl4 (MGP_PahariEiJ_G0015205) #12	Zwilch (MGP_PahariEiJ_G0015204) #13	Smad6 (MGP_PahariEiJ_G0015202) #15	Smad3 (MGP_PahariEiJ_G0015201) #18	Aagab (MGP_PahariEiJ_G0015200) #19	Iqch (MGP_PahariEiJ_G0015199) #20	2300009A05Rik (MGP_PahariEiJ_G0015198) #21	Map2k5 (MGP_PahariEiJ_G0015197) #22	Skor1 (MGP_PahariEiJ_G0015196) #24	Pias1 (MGP_PahariEiJ_G0015195) #25	Calml4 (MGP_PahariEiJ_G0015194) #26	MGP_PahariEiJ_G0015193	Fem1b (MGP_PahariEiJ_G0015192) #28	Itga11 (MGP_PahariEiJ_G0015191) #29	Coro2b (MGP_PahariEiJ_G0015190) #30	Anp32a (MGP_PahariEiJ_G0015189) #31	Spesp1 (MGP_PahariEiJ_G0015188) #33	Glce (MGP_PahariEiJ_G0015187) #35	Paqr5 (MGP_PahariEiJ_G0015186) #36	Kif23 (MGP_PahariEiJ_G0015185) #37	MGP_PahariEiJ_G0015184	Tle3 (MGP_PahariEiJ_G0015183)	MGP_PahariEiJ_G0015182
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Alpin marmot	MODERN SPECIES	7	MEGF11 (ENSMMMG00000006311)	DIS3L (ENSMMMG00000006220)	TIPIN (ENSMMMG00000006196) #7	MAP2K1 (ENSMMMG00000006173) #9	SNAPC5 (ENSMMMG00000006163) #11	RPL4 (ENSMMMG00000006109) #12	ENSMMMG00000006104	ZWILCH (ENSMMMG00000006077) #13	LCTL (ENSMMMG00000006061) #14	SMAD6 (ENSMMMG00000006032) #15	ENSMMMG00000006027	SMAD3 (ENSMMMG00000005977) #18	AAGAB (ENSMMMG00000005970) #19	IQCH (ENSMMMG00000005869) #20	ENSMMMG00000005844	MAP2K5 (ENSMMMG00000005809) #22	SKOR1 (ENSMMMG00000005773) #24	PIAS1 (ENSMMMG00000005733) #25	CALML4 (ENSMMMG00000005699) #26	CLN6 (ENSMMMG00000005687) #27	ENSMMMG00000005671 #28	ITGA11 (ENSMMMG00000005622) #29	CORO2B (ENSMMMG00000005600) #30	ENSMMMG00000005555 #31	SPESP1 (ENSMMMG00000005545) #33	NOX5 (ENSMMMG00000005478) #34	GLCE (ENSMMMG00000005432) #35	PAQR5 (ENSMMMG00000005396) #36	KIF23 (ENSMMMG00000005347) #37	RPLP1 (ENSMMMG00000005346)	TLE3 (ENSMMMG00000005164)
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Arctic ground squirrel	MODERN SPECIES	397					MAP2K1 (ENSUPAG00010018149) #9	SNAPC5 (ENSUPAG00010018142) #11	RPL4 (ENSUPAG00010018119) #12	ZWILCH (ENSUPAG00010018079) #13	LCTL (ENSUPAG00010018063) #14	SMAD6 (ENSUPAG00010018050) #15	ENSUPAG00010018048	SMAD3 (ENSUPAG00010018010) #18	AAGAB (ENSUPAG00010018001) #19	IQCH (ENSUPAG00010017914) #20	C15orf61 (ENSUPAG00010017904) #21	MAP2K5 (ENSUPAG00010017819) #22	SKOR1 (ENSUPAG00010017792) #24	ENSUPAG00010017781	PIAS1 (ENSUPAG00010017772) #25	CALML4 (ENSUPAG00010017747) #26	CLN6 (ENSUPAG00010017740) #27	FEM1B (ENSUPAG00010017736) #28	ITGA11 (ENSUPAG00010017705) #29
Squirrel	MODERN SPECIES	71	DENND4A (ENSSTOG00000026966)	RAB11A (ENSSTOG00000015255)	MEGF11 (ENSSTOG00000015258)	DIS3L (ENSSTOG00000009158)	TIPIN (ENSSTOG00000009182) #7	MAP2K1 (ENSSTOG00000009190) #9	SNAPC5 (ENSSTOG00000009201) #11	RPL4 (ENSSTOG00000009221) #12	ZWILCH (ENSSTOG00000009607) #13	LCTL (ENSSTOG00000028073) #14	SMAD6 (ENSSTOG00000000696) #15	SMAD3 (ENSSTOG00000010286) #18	AAGAB (ENSSTOG00000010291) #19	IQCH (ENSSTOG00000010299) #20	C15orf61 (ENSSTOG00000010312) #21	MAP2K5 (ENSSTOG00000010318) #22	SKOR1 (ENSSTOG00000002675) #24	PIAS1 (ENSSTOG00000015532) #25	CALML4 (ENSSTOG00000015539) #26	CLN6 (ENSSTOG00000015540) #27	FEM1B (ENSSTOG00000015544) #28	ITGA11 (ENSSTOG00000015545) #29	CORO2B (ENSSTOG00000015918) #30	ENSSTOG00000015929 #31	GLCE (ENSSTOG00000019509) #35	PAQR5 (ENSSTOG00000000507) #36	KIF23 (ENSSTOG00000022809) #37	RPLP1 (ENSSTOG00000027893)	TLE3 (ENSSTOG00000000531)	UACA (ENSSTOG00000024719)	LARP6 (ENSSTOG00000024279)
Eurasian red squirrel	MODERN SPECIES	11	RAB11A (ENSSVLG00005024246)	MEGF11 (ENSSVLG00005024351)	DIS3L (ENSSVLG00005024622)	TIPIN (ENSSVLG00005024668) #7	MAP2K1 (ENSSVLG00005024707) #9	SNAPC5 (ENSSVLG00005024729) #11	ENSSVLG00005024744 #12	ZWILCH (ENSSVLG00005024833) #13	LCTL (ENSSVLG00005024912) #14	SMAD6 (ENSSVLG00005024946) #15	ENSSVLG00005024968	SMAD3 (ENSSVLG00005024991) #18	AAGAB (ENSSVLG00005025018) #19	IQCH (ENSSVLG00005025085) #20	C15orf61 (ENSSVLG00005006592) #21	MAP2K5 (ENSSVLG00005006656) #22	SKOR1 (ENSSVLG00005006917) #24	PIAS1 (ENSSVLG00005007019) #25	CALML4 (ENSSVLG00005007109) #26	CLN6 (ENSSVLG00005007215) #27	FEM1B (ENSSVLG00005007302) #28	ITGA11 (ENSSVLG00005007326) #29	CORO2B (ENSSVLG00005007364) #30	ENSSVLG00005007452 #31	ENSSVLG00005007513	SPESP1 (ENSSVLG00005007565) #33	NOX5 (ENSSVLG00005007597) #34	GLCE (ENSSVLG00005007694) #35	PAQR5 (ENSSVLG00005007768) #36	KIF23 (ENSSVLG00005007918) #37	ENSSVLG00005008418
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.vb #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.vb #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.vb #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b	ENSGT00940000157475
Long-tailed chinchilla	MODERN SPECIES	157	DENND4A (ENSCLAG00000007003)	RAB11A (ENSCLAG00000007435)	MEGF11 (ENSCLAG00000013146)	DIS3L (ENSCLAG00000005741)	TIPIN (ENSCLAG00000004924) #7	MAP2K1 (ENSCLAG00000013042) #9	SNAPC5 (ENSCLAG00000011660) #11	RPL4 (ENSCLAG00000010827) #12	ZWILCH (ENSCLAG00000010124) #13	LCTL (ENSCLAG00000004564) #14	ENSCLAG00000005550 #15	SMAD3 (ENSCLAG00000005027) #18	AAGAB (ENSCLAG00000008364) #19	IQCH (ENSCLAG00000011031) #20	C15orf61 (ENSCLAG00000008894) #21	MAP2K5 (ENSCLAG00000005277) #22	SKOR1 (ENSCLAG00000007488) #24	PIAS1 (ENSCLAG00000008129) #25	CALML4 (ENSCLAG00000008707) #26	CLN6 (ENSCLAG00000007035) #27	FEM1B (ENSCLAG00000004834) #28	ITGA11 (ENSCLAG00000006568) #29	CORO2B (ENSCLAG00000006658) #30	ENSCLAG00000010256 #31	SPESP1 (ENSCLAG00000009992) #33	GLCE (ENSCLAG00000009057) #35	PAQR5 (ENSCLAG00000008730) #36	KIF23 (ENSCLAG00000009415) #37	ENSCLAG00000008677	TLE3 (ENSCLAG00000006154)	UACA (ENSCLAG00000016558)
Degu	MODERN SPECIES	67	ENSODEG00000016878	MEGF11 (ENSODEG00000015967)	DIS3L (ENSODEG00000015811)	MAP2K1 (ENSODEG00000016739) #9	ENSODEG00000016495 #12	ZWILCH (ENSODEG00000016374) #13	LCTL (ENSODEG00000016271) #14	ENSODEG00000020317	SMAD6 (ENSODEG00000016272) #15	SMAD3 (ENSODEG00000015739) #18	ENSODEG00000015886 #19	ENSODEG00000020336	IQCH (ENSODEG00000016134) #20	C15orf61 (ENSODEG00000016721) #21	ENSODEG00000016511	MAP2K5 (ENSODEG00000015607) #22	SKOR1 (ENSODEG00000015903) #24	PIAS1 (ENSODEG00000016418) #25	CALML4 (ENSODEG00000015441) #26	CLN6 (ENSODEG00000015888) #27	ENSODEG00000016475 #28	ENSODEG00000020366	ITGA11 (ENSODEG00000015700) #29	CORO2B (ENSODEG00000016099) #30	ENSODEG00000016071 #31	GLCE (ENSODEG00000015883) #35	PAQR5 (ENSODEG00000015793) #36	KIF23 (ENSODEG00000015341) #37	ENSODEG00000015331	TLE3 (ENSODEG00000015524)	UACA (ENSODEG00000015800)
Guinea pig	MODERN SPECIES		ENSCPOG00000007146	PTP4A1 (ENSCPOG00000032105)	LGSN (ENSCPOG00000008736)	KHDRBS2 (ENSCPOG00000025621)	PRIM2 (ENSCPOG00000003912)	ENSCPOG00000035048	RAB23 (ENSCPOG00000030218)	BAG2 (ENSCPOG00000040302)	ZNF451 (ENSCPOG00000002491)	BEND6 (ENSCPOG00000015453)	DST (ENSCPOG00000005092)	SMAD6 (ENSCPOG00000001535) #15	SMAD3 (ENSCPOG00000021314) #18	AAGAB (ENSCPOG00000000965) #19	C15orf61 (ENSCPOG00000022542) #21	MAP2K5 (ENSCPOG00000000970) #22	SKOR1 (ENSCPOG00000012665) #24	PIAS1 (ENSCPOG00000007278) #25	CALML4 (ENSCPOG00000033517) #26	CLN6 (ENSCPOG00000007282) #27	FEM1B (ENSCPOG00000031057) #28	ITGA11 (ENSCPOG00000012877) #29	CORO2B (ENSCPOG00000023117) #30	ENSCPOG00000008829 #31	GLCE (ENSCPOG00000020608) #35
Naked mole-rat female	MODERN SPECIES	19	RAB11A (ENSHGLG00000048551)	MEGF11 (ENSHGLG00000011012)	ENSHGLG00000007770	ENSHGLG00000005971 #7	ENSHGLG00000048822	ENSHGLG00000010036 #9	ENSHGLG00000040904 #11	ENSHGLG00000008054 #12	ZWILCH (ENSHGLG00000016059) #13	LCTL (ENSHGLG00000015669) #14	SMAD6 (ENSHGLG00000008453) #15	SMAD3 (ENSHGLG00000048787) #18	AAGAB (ENSHGLG00000038898) #19	ENSHGLG00000026352 #20	C15orf61 (ENSHGLG00000038870) #21	MAP2K5 (ENSHGLG00000006627) #22	SKOR1 (ENSHGLG00000017297) #24	Pias1 (ENSHGLG00000019002) #25	Calml4 (ENSHGLG00000018794) #26	CLN6 (ENSHGLG00000017958) #27	FEM1B (ENSHGLG00000017948) #28	ITGA11 (ENSHGLG00000007233) #29	CORO2B (ENSHGLG00000015273) #30	ENSHGLG00000013229 #31	SPESP1 (ENSHGLG00000046924) #33	GLCE (ENSHGLG00000033764) #35	PAQR5 (ENSHGLG00000009727) #36	KIF23 (ENSHGLG00000009784) #37	RPLP1 (ENSHGLG00000039543)	TLE3 (ENSHGLG00000008782)	ENSHGLG00000042030
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00950000183167.a.b.a	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d.j	ENSGT00950000183129.b.b	ENSGT00940000154201.a.b	ENSGT00390000008107.c.b	ENSGT00980000199570	ENSGT00940000155744
Pika	MODERN SPECIES	1513																MAP2K5 (ENSOPRG00000010999) #22	SKOR1 (ENSOPRG00000011023) #24
Rabbit	MODERN SPECIES	8	MEGF11 (ENSOCUG00000014760)	DIS3L (ENSOCUG00000002206)	TIPIN (ENSOCUG00000002212) #7	ENSOCUG00000023060	MAP2K1 (ENSOCUG00000008782) #9	SNAPC5 (ENSOCUG00000039231) #11	ENSOCUG00000008794 #12	ZWILCH (ENSOCUG00000008800) #13	LCTL (ENSOCUG00000021771) #14	ENSOCUG00000006134 #15	ENSOCUG00000014186	SMAD3 (ENSOCUG00000029601) #18	ENSOCUG00000039204	AAGAB (ENSOCUG00000006644) #19	IQCH (ENSOCUG00000006647) #20	MAP2K5 (ENSOCUG00000009024) #22	PIAS1 (ENSOCUG00000000618) #25	CLN6 (ENSOCUG00000017533) #27	FEM1B (ENSOCUG00000026586) #28	ITGA11 (ENSOCUG00000017726) #29	ENSOCUG00000036279	MYO9A (ENSOCUG00000017425)	SENP8 (ENSOCUG00000026054)	GRAMD2A (ENSOCUG00000006107)	ENSOCUG00000006119	PARP6 (ENSOCUG00000004374)	CELF6 (ENSOCUG00000021663)	HEXA (ENSOCUG00000009190)	ENSOCUG00000009207	ARIH1 (ENSOCUG00000011272)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00960000188521	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00960000188521	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Yarkand deer	MODERN SPECIES	3	MEGF11 (ENSCHYG00000009296)	DIS3L (ENSCHYG00000010099)	TIPIN (ENSCHYG00000010297) #7	MAP2K1 (ENSCHYG00000010364) #9	ENSCHYG00000010432	SNAPC5 (ENSCHYG00000010450) #11	ENSCHYG00000010506 #12	ZWILCH (ENSCHYG00000010774) #13	LCTL (ENSCHYG00000011283) #14	ENSCHYG00000011323	SMAD6 (ENSCHYG00000011380) #15	SMAD3 (ENSCHYG00000011473) #18	AAGAB (ENSCHYG00000011610) #19	IQCH (ENSCHYG00000011825) #20	C15orf61 (ENSCHYG00000012160) #21	MAP2K5 (ENSCHYG00000012261) #22	SKOR1 (ENSCHYG00000013681) #24	PIAS1 (ENSCHYG00000013992) #25	CALML4 (ENSCHYG00000014198) #26	CLN6 (ENSCHYG00000014290) #27	FEM1B (ENSCHYG00000014524) #28	ITGA11 (ENSCHYG00000014651) #29	CORO2B (ENSCHYG00000016934) #30	ENSCHYG00000017234 #31	SPESP1 (ENSCHYG00000017531) #33	NOX5 (ENSCHYG00000017570) #34	ENSCHYG00000017784 #37	ENSCHYG00000018101 #36	ENSCHYG00000018227 #35	ENSCHYG00000018296	ENSCHYG00000018365 #37
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Siberian musk deer	MODERN SPECIES	70	DENND4A (ENSMMSG00000000845)	ENSMMSG00000000971	MEGF11 (ENSMMSG00000001023)	DIS3L (ENSMMSG00000001148)	TIPIN (ENSMMSG00000001178) #7	MAP2K1 (ENSMMSG00000001210) #9	SNAPC5 (ENSMMSG00000001249) #11	ENSMMSG00000001277 #12	ZWILCH (ENSMMSG00000001358) #13	LCTL (ENSMMSG00000001442) #14	SMAD6 (ENSMMSG00000001473) #15	SMAD3 (ENSMMSG00000001493) #18	AAGAB (ENSMMSG00000001517) #19	IQCH (ENSMMSG00000001575) #20	C15orf61 (ENSMMSG00000001796) #21	MAP2K5 (ENSMMSG00000001850) #22	SKOR1 (ENSMMSG00000002112) #24	PIAS1 (ENSMMSG00000002174) #25	CALML4 (ENSMMSG00000002206) #26	CLN6 (ENSMMSG00000002230) #27	FEM1B (ENSMMSG00000002327) #28	ITGA11 (ENSMMSG00000002350) #29	CORO2B (ENSMMSG00000002385) #30	ENSMMSG00000002437	ENSMMSG00000002461 #31	ENSMMSG00000002508	NOX5 (ENSMMSG00000002533) #34	GLCE (ENSMMSG00000002545) #35	PAQR5 (ENSMMSG00000002566) #36	KIF23 (ENSMMSG00000002616) #37	RPLP1 (ENSMMSG00000002749)
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Bovinae	ANCESTRAL SPECIES	33	ENSGT00940000154914.ib	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
American bison	MODERN SPECIES	2972	DENND4A (ENSBBBG00000009388)	ENSBBBG00000001484	MEGF11 (ENSBBBG00000009393)	DIS3L (ENSBBBG00000001485)	ENSBBBG00000009401	MAP2K1 (ENSBBBG00000009402) #9	SNAPC5 (ENSBBBG00000009405) #11	RPL4 (ENSBBBG00000009410) #12	ZWILCH (ENSBBBG00000007486) #13	LCTL (ENSBBBG00000009415) #14	SMAD6 (ENSBBBG00000001493) #15	SMAD3 (ENSBBBG00000009419) #18	AAGAB (ENSBBBG00000009422) #19	IQCH (ENSBBBG00000009426) #20	C15orf61 (ENSBBBG00000009428) #21	MAP2K5 (ENSBBBG00000009430) #22	PIAS1 (ENSBBBG00000009435) #25	CALML4 (ENSBBBG00000009437) #26	CLN6 (ENSBBBG00000001505) #27	FEM1B (ENSBBBG00000009440) #28	ITGA11 (ENSBBBG00000009443) #29	CORO2B (ENSBBBG00000009445) #30	ENSBBBG00000009447 #31	SPESP1 (ENSBBBG00000001512) #33	NOX5 (ENSBBBG00000009452) #34	GLCE (ENSBBBG00000009453) #35	PAQR5 (ENSBBBG00000009457) #36	KIF23 (ENSBBBG00000001518) #37	ENSBBBG00000009487	TLE3 (ENSBBBG00000009541)	UACA (ENSBBBG00000009586)
Bos	ANCESTRAL SPECIES	31	ENSGT00940000154914.ib	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc.e.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Bos_a	ANCESTRAL SPECIES	40		ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc.e.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00960000188521	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Domestic yak	MODERN SPECIES	2	ENSBGRG00000024884	MEGF11 (ENSBGRG00000024819)	DIS3L (ENSBGRG00000024760)	TIPIN (ENSBGRG00000024730) #7	MAP2K1 (ENSBGRG00000024678) #9	SNAPC5 (ENSBGRG00000024649) #11	ENSBGRG00000024489 #12	ZWILCH (ENSBGRG00000024356) #13	LCTL (ENSBGRG00000024229) #14	SMAD6 (ENSBGRG00000024050) #15	SMAD3 (ENSBGRG00000023965) #18	AAGAB (ENSBGRG00000023783) #19	IQCH (ENSBGRG00000023490) #20	ENSBGRG00000023451 #21	ENSBGRG00000023428	MAP2K5 (ENSBGRG00000023013) #22	SKOR1 (ENSBGRG00000022855) #24	PIAS1 (ENSBGRG00000022493) #25	CALML4 (ENSBGRG00000022400) #26	CLN6 (ENSBGRG00000022143) #27	FEM1B (ENSBGRG00000022079) #28	ITGA11 (ENSBGRG00000021881) #29	CORO2B (ENSBGRG00000021747) #30	ENSBGRG00000021463 #31	ENSBGRG00000021382 #33	NOX5 (ENSBGRG00000021070) #34	GLCE (ENSBGRG00000020997) #35	PAQR5 (ENSBGRG00000020916) #36	ENSBGRG00000020887	KIF23 (ENSBGRG00000020219) #37	ENSBGRG00000020068
Wild yak	MODERN SPECIES	552				DIS3L (ENSBMUG00000005883)	TIPIN (ENSBMUG00000005904) #7	MAP2K1 (ENSBMUG00000005924) #9	SNAPC5 (ENSBMUG00000005936) #11	ENSBMUG00000005950 #12	ZWILCH (ENSBMUG00000006013) #13	LCTL (ENSBMUG00000006040) #14	ENSBMUG00000006090 #15	SMAD3 (ENSBMUG00000006115) #18	AAGAB (ENSBMUG00000006202) #19	IQCH (ENSBMUG00000006265) #20	ENSBMUG00000006346	MAP2K5 (ENSBMUG00000006406) #22	SKOR1 (ENSBMUG00000006456) #24	PIAS1 (ENSBMUG00000006486) #25	CALML4 (ENSBMUG00000006499) #26	CLN6 (ENSBMUG00000006571) #27	FEM1B (ENSBMUG00000006589) #28	ITGA11 (ENSBMUG00000006621) #29	CORO2B (ENSBMUG00000006646) #30	ENSBMUG00000006692 #31
Bos_b	ANCESTRAL SPECIES	28	ENSGT00940000154914.ib	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc.e.a #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Hybrid Bos Indicus	MODERN SPECIES	1	ENSBIXG00005029457	RAB11A (ENSBIXG00005029469)	MEGF11 (ENSBIXG00005029582)	DIS3L (ENSBIXG00005029839)	TIPIN (ENSBIXG00005029852) #7	ENSBIXG00005029869 #9	SNAPC5 (ENSBIXG00005029881) #11	ENSBIXG00005029889 #12	ZWILCH (ENSBIXG00005029921) #13	LCTL (ENSBIXG00005029961) #14	SMAD6 (ENSBIXG00005030012) #15	SMAD3 (ENSBIXG00005030065) #18	AAGAB (ENSBIXG00005030085) #19	IQCH (ENSBIXG00005030120) #20	C15orf61 (ENSBIXG00005030179) #21	MAP2K5 (ENSBIXG00005030309) #22	SKOR1 (ENSBIXG00005030471) #24	PIAS1 (ENSBIXG00005030503) #25	CALML4 (ENSBIXG00005030510) #26	ENSBIXG00005030548 #27	FEM1B (ENSBIXG00005030567) #28	ITGA11 (ENSBIXG00005030585) #29	CORO2B (ENSBIXG00005030625) #30	ENSBIXG00005030667 #31	SPESP1 (ENSBIXG00005030688) #33	NOX5 (ENSBIXG00005030704) #34	GLCE (ENSBIXG00005030727) #35	PAQR5 (ENSBIXG00005030752) #36	KIF23 (ENSBIXG00005030772) #37	ENSBIXG00005030831	TLE3 (ENSBIXG00005030890)
Cow	MODERN SPECIES	1	RAB11A (ENSBTAG00000018959)	MEGF11 (ENSBTAG00000034140)	DIS3L (ENSBTAG00000000371)	TIPIN (ENSBTAG00000000372) #7	MAP2K1 (ENSBTAG00000033983) #9	SNAPC5 (ENSBTAG00000005210) #11	RPL4 (ENSBTAG00000005211) #12	ZWILCH (ENSBTAG00000005213) #13	LCTL (ENSBTAG00000005214) #14	ENSBTAG00000050356	SMAD6 (ENSBTAG00000000625) #15	SMAD3 (ENSBTAG00000012599) #18	AAGAB (ENSBTAG00000040368) #19	IQCH (ENSBTAG00000013638) #20	C10H15orf61 (ENSBTAG00000045628) #21	MAP2K5 (ENSBTAG00000000218) #22	PIAS1 (ENSBTAG00000005564) #25	CALML4 (ENSBTAG00000025822) #26	CLN6 (ENSBTAG00000005565) #27	FEM1B (ENSBTAG00000008378) #28	ITGA11 (ENSBTAG00000008380) #29	CORO2B (ENSBTAG00000012681) #30	ANP32A (ENSBTAG00000012365) #31	SPESP1 (ENSBTAG00000005994) #33	NOX5 (ENSBTAG00000009030) #34	GLCE (ENSBTAG00000001405) #35	PAQR5 (ENSBTAG00000020352) #36	KIF23 (ENSBTAG00000009983) #37	RPLP1 (ENSBTAG00000018320)	TLE3 (ENSBTAG00000015580)	UACA (ENSBTAG00000013982)
Caprinae	ANCESTRAL SPECIES	30	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.o #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Goat	MODERN SPECIES	1	ENSCHIG00000012183	ENSCHIG00000006809	MEGF11 (ENSCHIG00000023140)	DIS3L (ENSCHIG00000009744)	ENSCHIG00000000481 #7	MAP2K1 (ENSCHIG00000021340) #9	SNAPC5 (ENSCHIG00000011315) #11	RPL4 (ENSCHIG00000012421) #12	ZWILCH (ENSCHIG00000015830) #13	LCTL (ENSCHIG00000017181) #14	SMAD6 (ENSCHIG00000012651) #15	SMAD3 (ENSCHIG00000013774) #18	ENSCHIG00000015028 #19	IQCH (ENSCHIG00000009034) #20	C15orf61 (ENSCHIG00000026630) #21	MAP2K5 (ENSCHIG00000022039) #22	SKOR1 (ENSCHIG00000017580) #24	ENSCHIG00000010951	ENSCHIG00000003884	PIAS1 (ENSCHIG00000014001) #25	CALML4 (ENSCHIG00000005207) #26	CLN6 (ENSCHIG00000024128) #27	FEM1B (ENSCHIG00000023393) #28	ITGA11 (ENSCHIG00000025296) #29	CORO2B (ENSCHIG00000023253) #30	ENSCHIG00000011806 #31	SPESP1 (ENSCHIG00000013213) #33	NOX5 (ENSCHIG00000023480) #34	GLCE (ENSCHIG00000014850) #35	PAQR5 (ENSCHIG00000016710) #36	KIF23 (ENSCHIG00000001851) #37
Rambouillet Sheep	MODERN SPECIES	23	DENND4A (ENSOARG00020006221)	ENSOARG00020006812	MEGF11 (ENSOARG00020006928)	DIS3L (ENSOARG00020007756)	TIPIN (ENSOARG00020007825) #7	MAP2K1 (ENSOARG00020007890) #9	SNAPC5 (ENSOARG00020007973) #11	RPL4 (ENSOARG00020008040) #12	ZWILCH (ENSOARG00020008203) #13	LCTL (ENSOARG00020008384) #14	SMAD6 (ENSOARG00020008552) #15	SMAD3 (ENSOARG00020008589) #18	ENSOARG00020008703 #19	IQCH (ENSOARG00020008820) #20	C15orf61 (ENSOARG00020009584) #21	MAP2K5 (ENSOARG00020009665) #22	SKOR1 (ENSOARG00020010969) #24	PIAS1 (ENSOARG00020011172) #25	CALML4 (ENSOARG00020011634) #26	CLN6 (ENSOARG00020011715) #27	FEM1B (ENSOARG00020011984) #28	ITGA11 (ENSOARG00020012015) #29	CORO2B (ENSOARG00020012576) #30	ENSOARG00020012822 #31	SPESP1 (ENSOARG00020012911) #33	NOX5 (ENSOARG00020012967) #34	GLCE (ENSOARG00020013246) #35	KIF23 (ENSOARG00020013394) #37	RPLP1 (ENSOARG00020014689)	TLE3 (ENSOARG00020014838)	ENSOARG00020016805
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc.b #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.a.b.a.b	ENSGT01030000234519.e.b
Blue whale	MODERN SPECIES	11	RAB11A (ENSBMSG00010004363)	MEGF11 (ENSBMSG00010004218)	DIS3L (ENSBMSG00010004171)	ENSBMSG00010004151 #7	ENSBMSG00010004137	MAP2K1 (ENSBMSG00010004109) #9	ENSBMSG00010004081 #11	ENSBMSG00010004041 #12	ZWILCH (ENSBMSG00010004025) #13	LCTL (ENSBMSG00010003979) #14	SMAD6 (ENSBMSG00010003960) #15	SMAD3 (ENSBMSG00010003929) #18	AAGAB (ENSBMSG00010003912) #19	IQCH (ENSBMSG00010003720) #20	C15orf61 (ENSBMSG00010003681) #21	MAP2K5 (ENSBMSG00010003598) #22	SKOR1 (ENSBMSG00010003555) #24	PIAS1 (ENSBMSG00010003520) #25	CALML4 (ENSBMSG00010003507) #26	CLN6 (ENSBMSG00010003453) #27	FEM1B (ENSBMSG00010003441) #28	ITGA11 (ENSBMSG00010003422) #29	ENSBMSG00010003412	CORO2B (ENSBMSG00010003388) #30	ENSBMSG00010003371 #31	SPESP1 (ENSBMSG00010003359) #33	ENSBMSG00010003347	GLCE (ENSBMSG00010003338) #35	PAQR5 (ENSBMSG00010003325) #36	KIF23 (ENSBMSG00010003273) #37	ENSBMSG00010003233
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc.b #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.a.b.a.b	ENSGT01030000234519.e.b
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc.b #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.a.b.a.b	ENSGT01030000234519.e.b
Dolphin	MODERN SPECIES	1671												SMAD3 (ENSTTRG00000003030) #18	AAGAB (ENSTTRG00000003032) #19	IQCH (ENSTTRG00000003033) #20	C15orf61 (ENSTTRG00000003034) #21	MAP2K5 (ENSTTRG00000003035) #22	SKOR1 (ENSTTRG00000003036) #24
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc.b #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT01010000222830.d.a	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.a.b.a.b	ENSGT01030000234519.e.b
Vaquita	MODERN SPECIES	11	MEGF11 (ENSPSNG00000002539)	ENSPSNG00000002464	TIPIN (ENSPSNG00000002436) #7	MAP2K1 (ENSPSNG00000002407) #9	SNAPC5 (ENSPSNG00000002388) #11	ENSPSNG00000002352 #12	ZWILCH (ENSPSNG00000002336) #13	LCTL (ENSPSNG00000002318) #14	ENSPSNG00000002306	SMAD6 (ENSPSNG00000002293) #15	ENSPSNG00000002286	SMAD3 (ENSPSNG00000002263) #18	AAGAB (ENSPSNG00000002239) #19	IQCH (ENSPSNG00000002126) #20	C15orf61 (ENSPSNG00000002043) #21	MAP2K5 (ENSPSNG00000001943) #22	SKOR1 (ENSPSNG00000001839) #24	ENSPSNG00000001804	PIAS1 (ENSPSNG00000001758) #25	CALML4 (ENSPSNG00000001723) #26	CLN6 (ENSPSNG00000001671) #27	FEM1B (ENSPSNG00000001608) #28	ITGA11 (ENSPSNG00000001465) #29	CORO2B (ENSPSNG00000001338) #30	ENSPSNG00000001312 #31	SPESP1 (ENSPSNG00000001290) #33	ENSPSNG00000001278	GLCE (ENSPSNG00000001258) #35	PAQR5 (ENSPSNG00000001238) #36	KIF23 (ENSPSNG00000001159) #37	ENSPSNG00000001104
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.xc.b #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT00940000158086	ENSGT00940000157725	ENSGT00860000136093.c	ENSGT00390000008748.b	ENSGT00940000164579.e.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00390000017697.a	ENSGT00940000153424.a.a.d	ENSGT00940000155907.b
Narwhal	MODERN SPECIES	308	DIS3L (ENSMMNG00015007393)	TIPIN (ENSMMNG00015007474) #7	ENSMMNG00015007536	MAP2K1 (ENSMMNG00015007579) #9	SNAPC5 (ENSMMNG00015007601) #11	ENSMMNG00015007652 #12	ZWILCH (ENSMMNG00015007746) #13	LCTL (ENSMMNG00015007784) #14	ENSMMNG00015007816	SMAD6 (ENSMMNG00015007869) #15	ENSMMNG00015007889	SMAD3 (ENSMMNG00015007909) #18	AAGAB (ENSMMNG00015007942) #19	IQCH (ENSMMNG00015008052) #20	C15orf61 (ENSMMNG00015008139) #21	MAP2K5 (ENSMMNG00015008216) #22	SKOR1 (ENSMMNG00015008331) #24	ENSMMNG00015008358	PIAS1 (ENSMMNG00015008373) #25	CALML4 (ENSMMNG00015008408) #26	CLN6 (ENSMMNG00015008469) #27	FEM1B (ENSMMNG00015008513) #28	ITGA11 (ENSMMNG00015008533) #29	CORO2B (ENSMMNG00015008567) #30	ENSMMNG00015008598 #31	SPESP1 (ENSMMNG00015008626) #33	ENSMMNG00015008639	GLCE (ENSMMNG00015008649) #35	PAQR5 (ENSMMNG00015008678) #36	KIF23 (ENSMMNG00015008785) #37	ENSMMNG00015008914
Beluga whale	MODERN SPECIES	20	TIPIN (ENSDLEG00000010313) #7	ENSDLEG00000010343	MAP2K1 (ENSDLEG00000010364) #9	SNAPC5 (ENSDLEG00000010421) #11	RPL4 (ENSDLEG00000010430) #12	ZWILCH (ENSDLEG00000010482) #13	LCTL (ENSDLEG00000010607) #14	ENSDLEG00000010647	ENSDLEG00000010657	SMAD6 (ENSDLEG00000010676) #15	ENSDLEG00000010689	SMAD3 (ENSDLEG00000010707) #18	AAGAB (ENSDLEG00000010803) #19	IQCH (ENSDLEG00000010864) #20	CUNH15orf61 (ENSDLEG00000010984) #21	MAP2K5 (ENSDLEG00000011046) #22	SKOR1 (ENSDLEG00000011320) #24	ENSDLEG00000011378	ENSDLEG00000011393	PIAS1 (ENSDLEG00000011410) #25	CALML4 (ENSDLEG00000011480) #26	CLN6 (ENSDLEG00000011495) #27	FEM1B (ENSDLEG00000011544) #28	ITGA11 (ENSDLEG00000000304) #29	CORO2B (ENSDLEG00000000393) #30	ANP32A (ENSDLEG00000000431) #31	SPESP1 (ENSDLEG00000000475) #33	GLCE (ENSDLEG00000000492) #35	PAQR5 (ENSDLEG00000000535) #36	KIF23 (ENSDLEG00000000768) #37	RPLP1 (ENSDLEG00000001442)
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	2	MEGF11 (ENSPCTG00005016590)	DIS3L (ENSPCTG00005017408)	TIPIN (ENSPCTG00005017493) #7	MAP2K1 (ENSPCTG00005017538) #9	SNAPC5 (ENSPCTG00005017569) #11	ENSPCTG00005017611 #12	ZWILCH (ENSPCTG00005017727) #13	LCTL (ENSPCTG00005017782) #14	ENSPCTG00005018004	SMAD6 (ENSPCTG00005018032) #15	ENSPCTG00005018068	SMAD3 (ENSPCTG00005018084) #18	AAGAB (ENSPCTG00005018169) #19	IQCH (ENSPCTG00005018285) #20	C11H15orf61 (ENSPCTG00005018901) #21	MAP2K5 (ENSPCTG00005018992) #22	SKOR1 (ENSPCTG00005019628) #24	ENSPCTG00005019847	ENSPCTG00005019890	PIAS1 (ENSPCTG00005019931) #25	CALML4 (ENSPCTG00005019999) #26	CLN6 (ENSPCTG00005020048) #27	FEM1B (ENSPCTG00005020203) #28	ITGA11 (ENSPCTG00005020249) #29	SPESP1 (ENSPCTG00005020391) #33	GLCE (ENSPCTG00005020426) #35	PAQR5 (ENSPCTG00005020467) #36	KIF23 (ENSPCTG00005020503) #37	RPLP1 (ENSPCTG00005020625)	TLE3 (ENSPCTG00005008710)	UACA (ENSPCTG00005008860)
Sperm whale	MODERN SPECIES	6	HEY1 (ENSPCTG00005009776)	MRPS28 (ENSPCTG00005009722)	TPD52 (ENSPCTG00005009056)	ZBTB10 (ENSPCTG00005008894)	ZNF704 (ENSPCTG00005008805)	PAG1 (ENSPCTG00005008762)	FABP5 (ENSPCTG00005008709)	PMP2 (ENSPCTG00005008640)	FABP4 (ENSPCTG00005008594)	IMPA1 (ENSPCTG00005008562)	SLC10A5 (ENSPCTG00005008548)	ZFAND1 (ENSPCTG00005008497)	CHMP4C (ENSPCTG00005008474)	SNX16 (ENSPCTG00005008395)	ENSPCTG00005008384	ENSPCTG00005008363 #22	ENSPCTG00005008343	ENSPCTG00005008334	RALYL (ENSPCTG00005007894)	ENSPCTG00005007815	ENSPCTG00005007757	LRRCC1 (ENSPCTG00005007653)	E2F5 (ENSPCTG00005007626)	RBIS (ENSPCTG00005007601)	CA13 (ENSPCTG00005007539)	CA1 (ENSPCTG00005007482)	CA3 (ENSPCTG00005007438)	CA2 (ENSPCTG00005007413)	ATP6V0D2 (ENSPCTG00005007375)	ENSPCTG00005007358	WWP1 (ENSPCTG00005007297)
Camelidae	ANCESTRAL SPECIES	83	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27
Arabian camel	MODERN SPECIES	32	RAB11A (ENSCDRG00005002443)	MEGF11 (ENSCDRG00005002479)	DIS3L (ENSCDRG00005002526)	TIPIN (ENSCDRG00005002562) #7	MAP2K1 (ENSCDRG00005002580) #9	SNAPC5 (ENSCDRG00005002604) #11	ENSCDRG00005002627 #12	ZWILCH (ENSCDRG00005002673) #13	LCTL (ENSCDRG00005002712) #14	ENSCDRG00005002745	ENSCDRG00005002755 #15	SMAD3 (ENSCDRG00005002780) #18	AAGAB (ENSCDRG00005002843) #19	IQCH (ENSCDRG00005002929) #20	C15orf61 (ENSCDRG00005003109) #21	MAP2K5 (ENSCDRG00005003152) #22	PIAS1 (ENSCDRG00005003494) #25	ENSCDRG00005003580	CALML4 (ENSCDRG00005003629) #26	CLN6 (ENSCDRG00005003662) #27	ENSCDRG00005003720	ENSCDRG00005003749	RAB8B (ENSCDRG00005003808)	APH1B (ENSCDRG00005003835)	CA12 (ENSCDRG00005003913)	ENSCDRG00005004006	ENSCDRG00005006370	TPM1 (ENSCDRG00005006508)	TLN2 (ENSCDRG00005008648)	ENSCDRG00005009161	VPS13C (ENSCDRG00005009482)
Alpaca	MODERN SPECIES	3324													AAGAB (ENSVPAG00000008879) #19	IQCH (ENSVPAG00000008883) #20	C15orf61 (ENSVPAG00000008887) #21	MAP2K5 (ENSVPAG00000008890) #22
Suina	ANCESTRAL SPECIES	12	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.l.g.a.a	ENSGT01030000234519.e.b
Pig	MODERN SPECIES		MEGF11 (ENSSSCG00000004939)	DIS3L (ENSSSCG00000004941)	TIPIN (ENSSSCG00000004942) #7	MAP2K1 (ENSSSCG00000004943) #9	SNAPC5 (ENSSSCG00000038941) #11	RPL4 (ENSSSCG00000004945) #12	ZWILCH (ENSSSCG00000004946) #13	ENSSSCG00000051767	LCTL (ENSSSCG00000004947) #14	SMAD6 (ENSSSCG00000004948) #15	SMAD3 (ENSSSCG00000004952) #18	AAGAB (ENSSSCG00000004951) #19	ENSSSCG00000057448 #20	ENSSSCG00000034963 #20	C15orf61 (ENSSSCG00000004954) #21	MAP2K5 (ENSSSCG00000004955) #22	SKOR1 (ENSSSCG00000004956) #24	PIAS1 (ENSSSCG00000004958) #25	CALML4 (ENSSSCG00000026517) #26	CLN6 (ENSSSCG00000004957) #27	FEM1B (ENSSSCG00000022419) #28	ITGA11 (ENSSSCG00000004961) #29	CORO2B (ENSSSCG00000004962) #30	ENSSSCG00000004963 #31	SPESP1 (ENSSSCG00000032244) #33	NOX5 (ENSSSCG00000004966) #34	GLCE (ENSSSCG00000026078) #35	PAQR5 (ENSSSCG00000004968) #36	KIF23 (ENSSSCG00000004969) #37	RPLP1 (ENSSSCG00000004970)	TLE3 (ENSSSCG00000004971)
Chacoan peccary	MODERN SPECIES	786	DENND4A (ENSCWAG00000016363)	RAB11A (ENSCWAG00000016259)	MEGF11 (ENSCWAG00000015726)	DIS3L (ENSCWAG00000015597)	TIPIN (ENSCWAG00000015560) #7	MAP2K1 (ENSCWAG00000015519) #9	SNAPC5 (ENSCWAG00000015485) #11	RPL4 (ENSCWAG00000015376) #12	ZWILCH (ENSCWAG00000015266) #13	LCTL (ENSCWAG00000015109) #14	SMAD6 (ENSCWAG00000015079) #15	SMAD3 (ENSCWAG00000015026) #18	AAGAB (ENSCWAG00000014993) #19	IQCH (ENSCWAG00000014432) #20	C15orf61 (ENSCWAG00000014382) #21	MAP2K5 (ENSCWAG00000013886) #22	SKOR1 (ENSCWAG00000013676) #24	PIAS1 (ENSCWAG00000013465) #25	CALML4 (ENSCWAG00000013422) #26	CLN6 (ENSCWAG00000013181) #27	FEM1B (ENSCWAG00000013140) #28	ITGA11 (ENSCWAG00000013057) #29	CORO2B (ENSCWAG00000012937) #30	ENSCWAG00000012876 #31	SPESP1 (ENSCWAG00000012853) #33	GLCE (ENSCWAG00000012796) #35	PAQR5 (ENSCWAG00000012711) #36	KIF23 (ENSCWAG00000012586) #37	ENSCWAG00000012519	TLE3 (ENSCWAG00000009720)	UACA (ENSCWAG00000009354)
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00960000188521	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Carnivora	ANCESTRAL SPECIES		ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00860000136046 #17	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00910000146962 #23	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
lion	MODERN SPECIES	6	RAB11A (ENSPLOG00000008488)	MEGF11 (ENSPLOG00000008100)	DIS3L (ENSPLOG00000007929)	TIPIN (ENSPLOG00000007894) #7	MAP2K1 (ENSPLOG00000007836) #9	SNAPC5 (ENSPLOG00000007792) #11	RPL4 (ENSPLOG00000007707) #12	ZWILCH (ENSPLOG00000007600) #13	LCTL (ENSPLOG00000007528) #14	SMAD6 (ENSPLOG00000007495) #15	ENSPLOG00000007093 #17	SMAD3 (ENSPLOG00000007068) #18	AAGAB (ENSPLOG00000007046) #19	IQCH (ENSPLOG00000006897) #20	C15orf61 (ENSPLOG00000006817) #21	MAP2K5 (ENSPLOG00000006228) #22	SKOR1 (ENSPLOG00000005020) #24	PIAS1 (ENSPLOG00000004975) #25	CALML4 (ENSPLOG00000004955) #26	CLN6 (ENSPLOG00000004871) #27	FEM1B (ENSPLOG00000004841) #28	ITGA11 (ENSPLOG00000004793) #29	CORO2B (ENSPLOG00000004744) #30	ENSPLOG00000004724 #31	SPESP1 (ENSPLOG00000004706) #33	NOX5 (ENSPLOG00000004683) #34	GLCE (ENSPLOG00000004669) #35	PAQR5 (ENSPLOG00000004659) #36	KIF23 (ENSPLOG00000004617) #37	ENSPLOG00000004575	TLE3 (ENSPLOG00000004493)
leopard	MODERN SPECIES	7	RAB11A (ENSPPRG00000010471)	MEGF11 (ENSPPRG00000014069)	DIS3L (ENSPPRG00000019912)	TIPIN (ENSPPRG00000022554) #7	MAP2K1 (ENSPPRG00000022608) #9	SNAPC5 (ENSPPRG00000000465) #11	ENSPPRG00000000610 #12	ZWILCH (ENSPPRG00000001390) #13	LCTL (ENSPPRG00000002315) #14	SMAD6 (ENSPPRG00000002502) #15	SMAD3 (ENSPPRG00000003306) #18	AAGAB (ENSPPRG00000003564) #19	IQCH (ENSPPRG00000005647) #20	C15orf61 (ENSPPRG00000005929) #21	ENSPPRG00000005987 #23	MAP2K5 (ENSPPRG00000006923) #22	SKOR1 (ENSPPRG00000007828) #24	PIAS1 (ENSPPRG00000008695) #25	CALML4 (ENSPPRG00000009014) #26	CLN6 (ENSPPRG00000011593) #27	FEM1B (ENSPPRG00000011995) #28	ITGA11 (ENSPPRG00000014106) #29	CORO2B (ENSPPRG00000015002) #30	ENSPPRG00000015452 #31	NOX5 (ENSPPRG00000020694) #34	GLCE (ENSPPRG00000021675) #35	PAQR5 (ENSPPRG00000022419) #36	KIF23 (ENSPPRG00000023196) #37	RPLP1 (ENSPPRG00000022902)	TLE3 (ENSPPRG00000009948)	UACA (ENSPPRG00000010906)
Tiger	MODERN SPECIES	204	SLC24A1 (ENSPTIG00000017335)	DENND4A (ENSPTIG00000018874)	RAB11A (ENSPTIG00000021637)	MEGF11 (ENSPTIG00000001273)	DIS3L (ENSPTIG00000009042)	ENSPTIG00000009826	MAP2K1 (ENSPTIG00000010070) #9	SNAPC5 (ENSPTIG00000010493) #11	ENSPTIG00000010784 #12	ZWILCH (ENSPTIG00000011456) #13	LCTL (ENSPTIG00000012036) #14	SMAD3 (ENSPTIG00000012606) #18	AAGAB (ENSPTIG00000013747) #19	IQCH (ENSPTIG00000014096) #20	ENSPTIG00000015816	MAP2K5 (ENSPTIG00000016073) #22	ENSPTIG00000017654 #23	PIAS1 (ENSPTIG00000017759) #25	CALML4 (ENSPTIG00000018784) #26	CLN6 (ENSPTIG00000019082) #27	FEM1B (ENSPTIG00000019928) #28	ITGA11 (ENSPTIG00000020061) #29	CORO2B (ENSPTIG00000001549) #30	ENSPTIG00000006135 #31	NOX5 (ENSPTIG00000006417) #34	GLCE (ENSPTIG00000008506) #35	PAQR5 (ENSPTIG00000008616) #36	KIF23 (ENSPTIG00000009094) #37	ENSPTIG00000012375	TLE3 (ENSPTIG00000012641)	UACA (ENSPTIG00000014352)
Cat	MODERN SPECIES	237	DENND4A (ENSFCAG00000008694)	RAB11A (ENSFCAG00000030174)	MEGF11 (ENSFCAG00000003091)	DIS3L (ENSFCAG00000029869)	TIPIN (ENSFCAG00000035191) #7	MAP2K1 (ENSFCAG00000028389) #9	SNAPC5 (ENSFCAG00000012291) #11	RPL4 (ENSFCAG00000012293) #12	ZWILCH (ENSFCAG00000012294) #13	LCTL (ENSFCAG00000012298) #14	SMAD6 (ENSFCAG00000012300) #15	SMAD3 (ENSFCAG00000027081) #18	AAGAB (ENSFCAG00000004418) #19	IQCH (ENSFCAG00000004419) #20	CB3H15orf61 (ENSFCAG00000040546) #21	MAP2K5 (ENSFCAG00000004420) #22	SKOR1 (ENSFCAG00000043709) #24	PIAS1 (ENSFCAG00000018490) #25	CALML4 (ENSFCAG00000006497) #26	CLN6 (ENSFCAG00000025647) #27	ENSFCAG00000049632	FEM1B (ENSFCAG00000045964) #28	ITGA11 (ENSFCAG00000006499) #29	CORO2B (ENSFCAG00000006500) #30	ENSFCAG00000034954 #31	SPESP1 (ENSFCAG00000048668) #33	NOX5 (ENSFCAG00000001372) #34	GLCE (ENSFCAG00000010280) #35	PAQR5 (ENSFCAG00000010285) #36	KIF23 (ENSFCAG00000010286) #37	ENSFCAG00000041947
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Canidae	ANCESTRAL SPECIES	15	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00950000185603	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218.m #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00940000153533.a.m.b.b	ENSGT00940000163568	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145.lc.a #12	ENSGT00390000013696 #13	ENSGT00950000185603	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218.m #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00940000153533.a.m.b.b	ENSGT00940000163568	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37
Dog	MODERN SPECIES	23	ENSCAFG00845014976	DIS3L (ENSCAFG00845015076)	TIPIN (ENSCAFG00845015229) #7	ENSCAFG00845015268	MAP2K1 (ENSCAFG00845015371) #9	SNAPC5 (ENSCAFG00845015512) #11	RPL4 (ENSCAFG00845015609) #12	ZWILCH (ENSCAFG00845015845) #13	ENSCAFG00845016122	LCTL (ENSCAFG00845016168) #14	SMAD6 (ENSCAFG00845016415) #15	SMAD3 (ENSCAFG00845016639) #18	AAGAB (ENSCAFG00845016886) #19	IQCH (ENSCAFG00845017088) #20	C15orf61 (ENSCAFG00845017380) #21	MAP2K5 (ENSCAFG00845017514) #22	SKOR1 (ENSCAFG00845017976) #24	PIAS1 (ENSCAFG00845018319) #25	CALML4 (ENSCAFG00845018790) #26	CLN6 (ENSCAFG00845018935) #27	FEM1B (ENSCAFG00845019340) #28	ITGA11 (ENSCAFG00845019410) #29	CORO2B (ENSCAFG00845019590) #30	ANP32A (ENSCAFG00845019800) #31	SPESP1 (ENSCAFG00845019873) #33	NOX5 (ENSCAFG00845020023) #34	ENSCAFG00845020567	GLCE (ENSCAFG00845020635) #35	ENSCAFG00845020715	PAQR5 (ENSCAFG00845020779) #36	RPLP1 (ENSCAFG00845020933)
Dingo	MODERN SPECIES	205	DENND4A (ENSCAFG00020008501)	RAB11A (ENSCAFG00020008478)	MEGF11 (ENSCAFG00020008443)	DIS3L (ENSCAFG00020008413)	TIPIN (ENSCAFG00020008398) #7	MAP2K1 (ENSCAFG00020008392) #9	SNAPC5 (ENSCAFG00020008387) #11	ENSCAFG00020008355 #12	ZWILCH (ENSCAFG00020008215) #13	LCTL (ENSCAFG00020008195) #14	SMAD6 (ENSCAFG00020008193) #15	SMAD3 (ENSCAFG00020008177) #18	ENSCAFG00020008170 #19	IQCH (ENSCAFG00020008118) #20	C15orf61 (ENSCAFG00020008094) #21	MAP2K5 (ENSCAFG00020008071) #22	SKOR1 (ENSCAFG00020008049) #24	PIAS1 (ENSCAFG00020008026) #25	CALML4 (ENSCAFG00020008020) #26	CLN6 (ENSCAFG00020008011) #27	FEM1B (ENSCAFG00020008006) #28	ITGA11 (ENSCAFG00020007730) #29	CORO2B (ENSCAFG00020007691) #30	ENSCAFG00020007674	ENSCAFG00020007670 #31	SPESP1 (ENSCAFG00020007667) #33	NOX5 (ENSCAFG00020007565) #34	ENSCAFG00020007559	ENSCAFG00020007554	GLCE (ENSCAFG00020007522) #35	PAQR5 (ENSCAFG00020007503) #36
Red fox	MODERN SPECIES		DIS3L (ENSVVUG00000014492)	TIPIN (ENSVVUG00000014501) #7	MAP2K1 (ENSVVUG00000014514) #9	SNAPC5 (ENSVVUG00000014527) #11	ENSVVUG00000014531 #12	ZWILCH (ENSVVUG00000014559) #13	ENSVVUG00000014578	LCTL (ENSVVUG00000014585) #14	ENSVVUG00000014612	ENSVVUG00000014615	SMAD6 (ENSVVUG00000014625) #15	SMAD3 (ENSVVUG00000014647) #18	AAGAB (ENSVVUG00000014658) #19	IQCH (ENSVVUG00000014665) #20	C15orf61 (ENSVVUG00000014693) #21	MAP2K5 (ENSVVUG00000014703) #22	ENSVVUG00000014708 #24	PIAS1 (ENSVVUG00000014713) #25	ENSVVUG00000014716 #26	CLN6 (ENSVVUG00000014717) #27	FEM1B (ENSVVUG00000014718) #28	ITGA11 (ENSVVUG00000014719) #29	CORO2B (ENSVVUG00000014724) #30	ANP32A (ENSVVUG00000014726) #31	SPESP1 (ENSVVUG00000014730) #33	NOX5 (ENSVVUG00000014734) #34	ENSVVUG00000014756	GLCE (ENSVVUG00000014760) #35	ENSVVUG00000014761	PAQR5 (ENSVVUG00000014764) #36	KIF23 (ENSVVUG00000014800) #37
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Ursidae	ANCESTRAL SPECIES	21	ENSGT00940000155836.B.p	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Ursus	ANCESTRAL SPECIES	37	ENSGT00940000155836.B.p	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.a.b.a.b	ENSGT00550000074698.k.a.b.b
Polar bear	MODERN SPECIES	320	INTS14 (ENSUMAG00000012368)	SLC24A1 (ENSUMAG00000012325)	DENND4A (ENSUMAG00000012290)	RAB11A (ENSUMAG00000012273)	MEGF11 (ENSUMAG00000012242)	DIS3L (ENSUMAG00000012227)	TIPIN (ENSUMAG00000012215) #7	MAP2K1 (ENSUMAG00000012208) #9	RPL4 (ENSUMAG00000012178) #12	ZWILCH (ENSUMAG00000012145) #13	LCTL (ENSUMAG00000012072) #14	ENSUMAG00000012057 #18	AAGAB (ENSUMAG00000012048) #19	IQCH (ENSUMAG00000012020) #20	C15orf61 (ENSUMAG00000012016) #21	MAP2K5 (ENSUMAG00000011992) #22	ENSUMAG00000011983	PIAS1 (ENSUMAG00000011980) #25	CALML4 (ENSUMAG00000011979) #26	ENSUMAG00000011962 #27	FEM1B (ENSUMAG00000011958) #28	ITGA11 (ENSUMAG00000011792) #29	CORO2B (ENSUMAG00000011755) #30	ENSUMAG00000011740 #31	ENSUMAG00000011724	SPESP1 (ENSUMAG00000011718) #33	NOX5 (ENSUMAG00000011648) #34	GLCE (ENSUMAG00000011629) #35	PAQR5 (ENSUMAG00000011621) #36	KIF23 (ENSUMAG00000010352) #37	ENSUMAG00000010153
American black bear	MODERN SPECIES	1977																ENSUAMG00000011592 #22	SKOR1 (ENSUAMG00000011590) #24
Giant Panda	MODERN SPECIES	15	DENND4A (ENSAMEG00000003046)	RAB11A (ENSAMEG00000003119)	MEGF11 (ENSAMEG00000003131)	DIS3L (ENSAMEG00000003166)	TIPIN (ENSAMEG00000027725) #7	MAP2K1 (ENSAMEG00000003218) #9	SNAPC5 (ENSAMEG00000003249) #11	ENSAMEG00000029170 #12	ZWILCH (ENSAMEG00000003251) #13	LCTL (ENSAMEG00000003300) #14	SMAD6 (ENSAMEG00000029979) #15	SMAD3 (ENSAMEG00000003318) #18	AAGAB (ENSAMEG00000028433) #19	IQCH (ENSAMEG00000005044) #20	C15orf61 (ENSAMEG00000029099) #21	MAP2K5 (ENSAMEG00000005013) #22	SKOR1 (ENSAMEG00000004996) #24	PIAS1 (ENSAMEG00000014025) #25	CALML4 (ENSAMEG00000014054) #26	CLN6 (ENSAMEG00000014058) #27	FEM1B (ENSAMEG00000014073) #28	ITGA11 (ENSAMEG00000014076) #29	CORO2B (ENSAMEG00000014093) #30	ENSAMEG00000014117 #31	SPESP1 (ENSAMEG00000014134) #33	NOX5 (ENSAMEG00000014136) #34	ENSAMEG00000020008	GLCE (ENSAMEG00000030318) #35	PAQR5 (ENSAMEG00000024842) #36	KIF23 (ENSAMEG00000014201) #37	RPLP1 (ENSAMEG00000014251)
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00550000074698.k.b.b	ENSGT00940000163058	ENSGT00940000163275
Ferret	MODERN SPECIES	228	RAB11A (ENSMPUG00000000387)	MEGF11 (ENSMPUG00000000383)	DIS3L (ENSMPUG00000000378)	TIPIN (ENSMPUG00000000365) #7	MAP2K1 (ENSMPUG00000000363) #9	SNAPC5 (ENSMPUG00000000356) #11	ENSMPUG00000000337 #12	ZWILCH (ENSMPUG00000000333) #13	LCTL (ENSMPUG00000000312) #14	ENSMPUG00000000309	SMAD6 (ENSMPUG00000000307) #15	SMAD3 (ENSMPUG00000000304) #18	AAGAB (ENSMPUG00000000292) #19	IQCH (ENSMPUG00000000289) #20	C15orf61 (ENSMPUG00000000287) #21	MAP2K5 (ENSMPUG00000000285) #22	SKOR1 (ENSMPUG00000000283) #24	PIAS1 (ENSMPUG00000000281) #25	CALML4 (ENSMPUG00000000270) #26	CLN6 (ENSMPUG00000000267) #27	FEM1B (ENSMPUG00000000266) #28	ITGA11 (ENSMPUG00000000221) #29	CORO2B (ENSMPUG00000000220) #30	ENSMPUG00000000218 #31	ENSMPUG00000000216	SPESP1 (ENSMPUG00000000214) #33	NOX5 (ENSMPUG00000000210) #34	GLCE (ENSMPUG00000000209) #35	PAQR5 (ENSMPUG00000000205) #36	RPLP1 (ENSMPUG00000000204)	OR4E1 (ENSMPUG00000019444)
American mink	MODERN SPECIES	46	SLC24A1 (ENSNVIG00000017089)	DENND4A (ENSNVIG00000016862)	RAB11A (ENSNVIG00000016821)	MEGF11 (ENSNVIG00000016583)	DIS3L (ENSNVIG00000016535)	TIPIN (ENSNVIG00000016513) #7	MAP2K1 (ENSNVIG00000016498) #9	SNAPC5 (ENSNVIG00000016483) #11	RPL4 (ENSNVIG00000016412) #12	ZWILC (ENSNVIG00000016326) #13	LCTL (ENSNVIG00000016282) #14	SMAD6 (ENSNVIG00000016271) #15	SMAD3 (ENSNVIG00000016249) #18	AAGAB (ENSNVIG00000016212) #19	IQCH (ENSNVIG00000016136) #20	MP2K5 (ENSNVIG00000015958) #22	SKOR1 (ENSNVIG00000015923) #24	PIAS1 (ENSNVIG00000015868) #25	CALML4 (ENSNVIG00000015844) #26	CLN6 (ENSNVIG00000015741) #27	FEM1B (ENSNVIG00000015730) #28	ITGA11 (ENSNVIG00000015665) #29	ENSNVIG00000015659	CORO2B (ENSNVIG00000015623) #30	ENSNVIG00000015596 #31	ENSNVIG00000015562	SPESP1 (ENSNVIG00000015552) #33	NOX5 (ENSNVIG00000015522) #34	GLCE (ENSNVIG00000015508) #35	PAQR5 (ENSNVIG00000015474) #36	ENSNVIG00000015440
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000154914.db.a	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Equus	ANCESTRAL SPECIES	4	ENSGT00940000155836.B	ENSGT00940000154914.eb	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b.ic	ENSGT01030000234519.e.b
Donkey	MODERN SPECIES	11	DENND4A (ENSEASG00005006437)	RAB11A (ENSEASG00005006431)	MEGF11 (ENSEASG00005006429)	DIS3L (ENSEASG00005006407)	TIPIN (ENSEASG00005006396) #7	MAP2K1 (ENSEASG00005006387) #9	SNAPC5 (ENSEASG00005006384) #11	RPL4 (ENSEASG00005006373) #12	ZWILCH (ENSEASG00005006339) #13	LCTL (ENSEASG00005006319) #14	ENSEASG00005025450 #15	SMAD3 (ENSEASG00005006315) #18	AAGAB (ENSEASG00005006311) #19	IQCH (ENSEASG00005006301) #20	ENSEASG00005006297 #21	MAP2K5 (ENSEASG00005006290) #22	SKOR1 (ENSEASG00005006277) #24	ENSEASG00005006267	PIAS1 (ENSEASG00005006262) #25	CALML4 (ENSEASG00005033729) #26	CLN6 (ENSEASG00005034200) #27	FEM1B (ENSEASG00005006255) #28	ITGA11 (ENSEASG00005006251) #29	CORO2B (ENSEASG00005006245) #30	ENSEASG00005006243 #31	SPESP1 (ENSEASG00005028304) #33	NOX5 (ENSEASG00005006228) #34	ENSEASG00005025046	GLCE (ENSEASG00005006223) #35	PAQR5 (ENSEASG00005006222) #36	KIF23 (ENSEASG00005005598) #37
Horse	MODERN SPECIES		DENND4A (ENSECAG00000024306)	RAB11A (ENSECAG00000023865)	MEGF11 (ENSECAG00000000706)	DIS3L (ENSECAG00000007302)	TIPIN (ENSECAG00000004590) #7	MAP2K1 (ENSECAG00000010640) #9	RPL4 (ENSECAG00000023179) #12	ZWILCH (ENSECAG00000018367) #13	LCTL (ENSECAG00000014254) #14	SMAD6 (ENSECAG00000013706) #15	SMAD3 (ENSECAG00000020259) #18	ENSECAG00000047849 #20	AAGAB (ENSECAG00000013142) #19	IQCH (ENSECAG00000007674) #20	ENSECAG00000029823	MAP2K5 (ENSECAG00000022411) #22	SKOR1 (ENSECAG00000036584) #24	ENSECAG00000005747	PIAS1 (ENSECAG00000007993) #25	CALML4 (ENSECAG00000021844) #26	CLN6 (ENSECAG00000016991) #27	FEM1B (ENSECAG00000015587)	ITGA11 (ENSECAG00000023104) #29	CORO2B (ENSECAG00000014020) #30	ENSECAG00000002541 #31	SPESP1 (ENSECAG00000002377) #33	NOX5 (ENSECAG00000018409) #34	GLCE (ENSECAG00000014998) #35	ENSECAG00000059303	PAQR5 (ENSECAG00000008154) #36	KIF23 (ENSECAG00000014536) #37
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00940000154914.db.a	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465.h #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.a.b.a.b	ENSGT00940000156593
Megabat	MODERN SPECIES	2991															C15orf61 (ENSPVAG00000014376) #21	MAP2K5 (ENSPVAG00000014377) #22	SKOR1 (ENSPVAG00000014384) #24
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00940000154914.db.a	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00910000147041 #16	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465.h #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.a.b.a.b	ENSGT00940000156593
Microbat	MODERN SPECIES	1275												SMAD3 (ENSMLUG00000002185) #18	AAGAB (ENSMLUG00000002191) #19	IQCH (ENSMLUG00000002192) #20	C15orf61 (ENSMLUG00000029534) #21	MAP2K5 (ENSMLUG00000002205) #22	PIAS1 (ENSMLUG00000010321) #25	CALML4 (ENSMLUG00000010350) #26	CLN6 (ENSMLUG00000008964) #27	FEM1B (ENSMLUG00000008987) #28	ITGA11 (ENSMLUG00000008993) #29
Greater horseshoe bat	MODERN SPECIES	24	DENND4A (ENSRFEG00010004242)	ENSRFEG00010004168	MEGF11 (ENSRFEG00010004126)	DIS3L (ENSRFEG00010004058)	TIPIN (ENSRFEG00010004026) #7	MAP2K1 (ENSRFEG00010004010) #9	SNAPC5 (ENSRFEG00010003999) #11	ENSRFEG00010003980 #12	ZWILCH (ENSRFEG00010003952) #13	LCTL (ENSRFEG00010003917) #14	ENSRFEG00010003900 #16	SMAD6 (ENSRFEG00010003887) #15	SMAD3 (ENSRFEG00010003872) #18	AAGAB (ENSRFEG00010003850) #19	IQCH (ENSRFEG00010003782) #20	MAP2K5 (ENSRFEG00010003624) #22	SKOR1 (ENSRFEG00010003500) #24	ENSRFEG00010003474	ENSRFEG00010003431 #25	ENSRFEG00010003398 #26	CLN6 (ENSRFEG00010003356) #27	FEM1B (ENSRFEG00010003282) #28	ITGA11 (ENSRFEG00010003262) #29	CORO2B (ENSRFEG00010003225) #30	ENSRFEG00010003201 #31	SPESP1 (ENSRFEG00010003175) #33	ENSRFEG00010003165	GLCE (ENSRFEG00010003151) #35	PAQR5 (ENSRFEG00010003129) #36	KIF23 (ENSRFEG00010003091) #37	ENSRFEG00010003032
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157505 #22
Hedgehog	MODERN SPECIES	3510																ENSEEUG00000003462 #22
Common shrew	MODERN SPECIES	2644																MAP2K5 (ENSSARG00000007907) #22
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00390000005362 #33	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.k.b.b	ENSGT01030000234519.e.b
Afrotheria	ANCESTRAL SPECIES	58	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29
Tenrec	MODERN SPECIES	3377																MAP2K5 (ENSETEG00000016935) #22	SKOR1 (ENSETEG00000016942) #24
Afrotheria_a	ANCESTRAL SPECIES	56	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29
Elephant	MODERN SPECIES	466	INTS14 (ENSLAFG00000010235)	DENND4A (ENSLAFG00000010247)	RAB11A (ENSLAFG00000011418)	MEGF11 (ENSLAFG00000011424)	DIS3L (ENSLAFG00000006866)	TIPIN (ENSLAFG00000026016) #7	MAP2K1 (ENSLAFG00000006487) #9	SNAPC5 (ENSLAFG00000006491) #11	RPL4 (ENSLAFG00000006494) #12	LCTL (ENSLAFG00000012306) #14	SMAD6 (ENSLAFG00000013285) #15	SMAD3 (ENSLAFG00000021903) #18	AAGAB (ENSLAFG00000022590) #19	IQCH (ENSLAFG00000011381) #20	C15orf61 (ENSLAFG00000000737) #21	MAP2K5 (ENSLAFG00000001427) #22	SKOR1 (ENSLAFG00000018189) #24	ENSLAFG00000029244	PIAS1 (ENSLAFG00000018150) #25	CALML4 (ENSLAFG00000021943) #26	CLN6 (ENSLAFG00000029055) #27	FEM1B (ENSLAFG00000013998) #28	ITGA11 (ENSLAFG00000018505) #29
Hyrax	MODERN SPECIES	2764																MAP2K5 (ENSPCAG00000011959) #22	SKOR1 (ENSPCAG00000012126) #24
Xenarthra	ANCESTRAL SPECIES	973												ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908.i #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22
Armadillo	MODERN SPECIES	2822														ENSDNOG00000015937 #20	ENSDNOG00000046270	MAP2K5 (ENSDNOG00000007183) #22	TENT5A (ENSDNOG00000032508)
Sloth	MODERN SPECIES	550														IQCH (ENSCHOG00000013765) #20	C15orf61 (ENSCHOG00000013785) #21	MAP2K5 (ENSCHOG00000013791) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.l	ENSGT01030000234519.e.b	ENSGT00940000157475
Opossum	MODERN SPECIES		RAB11A (ENSMODG00000009810)	MEGF11 (ENSMODG00000009795)	DIS3L (ENSMODG00000009760)	TIPIN (ENSMODG00000009724) #7	ENSMODG00000039883	MAP2K1 (ENSMODG00000009715) #9	ENSMODG00000025470 #11	RPL4 (ENSMODG00000009657) #12	ZWILCH (ENSMODG00000009648) #13	LCTL (ENSMODG00000009632) #14	SMAD6 (ENSMODG00000009620) #15	SMAD3 (ENSMODG00000038564) #18	ENSMODG00000009585 #19	ENSMODG00000009566 #20	C15orf61 (ENSMODG00000036723) #21	MAP2K5 (ENSMODG00000009527) #22	SKOR1 (ENSMODG00000024583) #24	PIAS1 (ENSMODG00000009467) #25	CALML4 (ENSMODG00000009430) #26	CLN6 (ENSMODG00000009425) #27	FEM1B (ENSMODG00000051021) #28	ITGA11 (ENSMODG00000009413) #29	ENSMODG00000040904	CORO2B (ENSMODG00000009371) #30	ENSMODG00000009359 #31	NOX5 (ENSMODG00000009308) #34	GLCE (ENSMODG00000042930) #35	ENSMODG00000038950	PAQR5 (ENSMODG00000009253) #36	KIF23 (ENSMODG00000009242) #37	ENSMODG00000009218
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.l	ENSGT01030000234519.e.b	ENSGT00940000157475
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.l.c.a	ENSGT00550000074698.l.d	ENSGT01030000234519.e.b
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00550000074698.l.c.a.a.b.a.a	ENSGT00550000074698.l.d	ENSGT01030000234519.e.b
Common wonbat	MODERN SPECIES	581	RAB11A (ENSVURG00010017156)	MEGF11 (ENSVURG00010017205)	DIS3L (ENSVURG00010017304)	TIPIN (ENSVURG00010017324) #7	MAP2K1 (ENSVURG00010017352) #9	SNAPC5 (ENSVURG00010017361) #11	RPL4 (ENSVURG00010017371) #12	ZWILCH (ENSVURG00010017403) #13	LCTL (ENSVURG00010017479) #14	SMAD6 (ENSVURG00010017499) #15	SMAD3 (ENSVURG00010017513) #18	AAGAB (ENSVURG00010017532) #19	IQCH (ENSVURG00010017554) #20	ENSVURG00010017577	C15orf61 (ENSVURG00010017585) #21	MAP2K5 (ENSVURG00010017619) #22	SKOR1 (ENSVURG00010017727) #24	PIAS1 (ENSVURG00010017756) #25	CALML4 (ENSVURG00010017772) #26	CLN6 (ENSVURG00010017776) #27	FEM1B (ENSVURG00010017788) #28	ITGA11 (ENSVURG00010017821) #29	CORO2B (ENSVURG00010018179) #30	ENSVURG00010018193 #31	NOX5 (ENSVURG00010018209) #34	GLCE (ENSVURG00010018222) #35	KIF23 (ENSVURG00010018250) #37	ENSVURG00010018348	ENSVURG00010018359	TLE3 (ENSVURG00010018378)	UACA (ENSVURG00010018458)
koala	MODERN SPECIES		DENND4A (ENSPCIG00000006919)	RAB11A (ENSPCIG00000006878)	MEGF11 (ENSPCIG00000006843)	DIS3L (ENSPCIG00000006827)	TIPIN (ENSPCIG00000006818) #7	MAP2K1 (ENSPCIG00000006816) #9	ENSPCIG00000006812 #11	RPL4 (ENSPCIG00000006799) #12	ZWILCH (ENSPCIG00000006798) #13	LCTL (ENSPCIG00000006796) #14	SMAD6 (ENSPCIG00000006792) #15	SMAD3 (ENSPCIG00000014066) #18	AAGAB (ENSPCIG00000014065) #19	IQCH (ENSPCIG00000023221) #20	C15orf61 (ENSPCIG00000023229) #21	MAP2K5 (ENSPCIG00000023233) #22	SKOR1 (ENSPCIG00000023240) #24	PIAS1 (ENSPCIG00000023245) #25	CALML4 (ENSPCIG00000023241) #26	CLN6 (ENSPCIG00000023237) #27	ENSPCIG00000023218	ITGA11 (ENSPCIG00000023209) #29	CORO2B (ENSPCIG00000023206) #30	ENSPCIG00000023204 #31	NOX5 (ENSPCIG00000013880) #34	GLCE (ENSPCIG00000013869) #35	PAQR5 (ENSPCIG00000013860) #36	KIF23 (ENSPCIG00000013844) #37	ENSPCIG00000020777	ENSPCIG00000034041	TLE3 (ENSPCIG00000020857)
Wallaby	MODERN SPECIES	4445																MAP2K5 (ENSMEUG00000002376) #22
Tasmanian devil	MODERN SPECIES	1	DENND4A (ENSSHAG00000002367)	RAB11A (ENSSHAG00000006622)	MEGF11 (ENSSHAG00000006869)	DIS3L (ENSSHAG00000010970)	TIPIN (ENSSHAG00000011237) #7	MAP2K1 (ENSSHAG00000029460) #9	SNAPC5 (ENSSHAG00000025154) #11	RPL4 (ENSSHAG00000002421) #12	ZWILCH (ENSSHAG00000002622) #13	LCTL (ENSSHAG00000003461) #14	SMAD6 (ENSSHAG00000007962) #15	SMAD3 (ENSSHAG00000023904) #18	AAGAB (ENSSHAG00000012729) #19	IQCH (ENSSHAG00000012985) #20	C15orf61 (ENSSHAG00000031222) #21	MAP2K5 (ENSSHAG00000014400) #22	SKOR1 (ENSSHAG00000027578) #24	PIAS1 (ENSSHAG00000022295) #25	CALML4 (ENSSHAG00000028912) #26	ENSSHAG00000003272 #27	FEM1B (ENSSHAG00000030104) #28	ITGA11 (ENSSHAG00000005006) #29	CORO2B (ENSSHAG00000009104) #30	ENSSHAG00000010906 #31	NOX5 (ENSSHAG00000012412) #34	GLCE (ENSSHAG00000023440) #35	ENSSHAG00000014510 #36	KIF23 (ENSSHAG00000014701) #37	RPLP1 (ENSSHAG00000014818)	ENSSHAG00000022254	TLE3 (ENSSHAG00000017102)
Platypus	MODERN SPECIES	16	DENND4A (ENSOANG00000044994)	RAB11A (ENSOANG00000038794)	MEGF11 (ENSOANG00000037204)	DIS3L (ENSOANG00000009753)	TIPIN (ENSOANG00000048848) #7	MAP2K1 (ENSOANG00000009750) #9	SNAPC5 (ENSOANG00000039654) #11	RPL4 (ENSOANG00000048650) #12	ZWILCH (ENSOANG00000004555) #13	LCTL (ENSOANG00000004554) #14	SMAD6 (ENSOANG00000042174) #15	SMAD3 (ENSOANG00000037003) #18	AAGAB (ENSOANG00000046695) #19	ENSOANG00000013556 #20	C15orf61 (ENSOANG00000042403) #21	MAP2K5 (ENSOANG00000013555) #22	SKOR1 (ENSOANG00000041839) #24	PIAS1 (ENSOANG00000013547) #25	CALML4 (ENSOANG00000036767) #26	CLN6 (ENSOANG00000044196) #27	ENSOANG00000013544	ITGA11 (ENSOANG00000013543) #29	CORO2B (ENSOANG00000013538) #30	ENSOANG00000048109 #31	ENSOANG00000013537 #33	NOX5 (ENSOANG00000012494) #34	GLCE (ENSOANG00000040386) #35	PAQR5 (ENSOANG00000013535) #36	KIF23 (ENSOANG00000013534) #37	TLE3 (ENSOANG00000041296)	UACA (ENSOANG00000014645)
Sauria	ANCESTRAL SPECIES	10	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00950000186456	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00950000186456	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
tuatara	MODERN SPECIES	842	ENSSPUG00000013716	ENSSPUG00000013706	RAB11A (ENSSPUG00000013698)	MEGF11 (ENSSPUG00000013679)	DIS3L (ENSSPUG00000013652)	TIPIN (ENSSPUG00000013622) #7	MAP2K1 (ENSSPUG00000013607) #9	SNAPC5 (ENSSPUG00000013599) #11	RPL4 (ENSSPUG00000013570) #12	ENSSPUG00000013505 #13	LCTL (ENSSPUG00000013481) #14	SMAD6 (ENSSPUG00000013465) #15	SMAD3 (ENSSPUG00000013429) #18	AAGAB (ENSSPUG00000013388) #19	C15orf61 (ENSSPUG00000013351) #21	MAP2K5 (ENSSPUG00000013303) #22	PIAS1 (ENSSPUG00000013205) #25	CALML4 (ENSSPUG00000013190) #26	CLN6 (ENSSPUG00000013176) #27	ENSSPUG00000013166	ITGA11 (ENSSPUG00000013143) #29	CORO2B (ENSSPUG00000013122) #30	ENSSPUG00000013106 #31	NOX5 (ENSSPUG00000013079) #34	GLCE (ENSSPUG00000013062) #35	PAQR5 (ENSSPUG00000013045) #36	KIF23 (ENSSPUG00000012998) #37
Episquamata	ANCESTRAL SPECIES	9	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00950000186456	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Laterata	ANCESTRAL SPECIES	16	ENSGT00390000009486	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Common wall lizard	MODERN SPECIES	5	RAB11A (ENSPMRG00000014183)	MEGF11 (ENSPMRG00000014263)	ENSPMRG00000014534	ENSPMRG00000014537	DIS3L (ENSPMRG00000014540)	TIPIN (ENSPMRG00000014546) #7	MAP2K1 (ENSPMRG00000014555) #9	SNAPC5 (ENSPMRG00000014563) #11	RPL4 (ENSPMRG00000014570) #12	ZWILCH (ENSPMRG00000014603) #13	SMAD6 (ENSPMRG00000014612) #15	ENSPMRG00000014621 #18	AAGAB (ENSPMRG00000014629) #19	IQCH (ENSPMRG00000014635) #20	C15orf61 (ENSPMRG00000014653) #21	MAP2K5 (ENSPMRG00000014661) #22	SKOR1 (ENSPMRG00000014676) #24	PIAS1 (ENSPMRG00000014688) #25	CALML4 (ENSPMRG00000014698) #26	CLN6 (ENSPMRG00000014706) #27	ENSPMRG00000014712	ENSPMRG00000014717	ITGA11 (ENSPMRG00000014723) #29	CORO2B (ENSPMRG00000014736) #30	ENSPMRG00000014760 #31	NOX5 (ENSPMRG00000014775) #34	ALAD (ENSPMRG00000014792)	HDHD3 (ENSPMRG00000014803)	BSPRY (ENSPMRG00000014807)	WDR31 (ENSPMRG00000020553)	ENSPMRG00000020563
Argentine black and white tegu	MODERN SPECIES	46	INTS14 (ENSSMRG00000021590)	DENND4A (ENSSMRG00000021589)	RAB11A (ENSSMRG00000021588)	MEGF11 (ENSSMRG00000021585)	DIS3L (ENSSMRG00000021584)	TIPIN (ENSSMRG00000021582) #7	MAP2K1 (ENSSMRG00000021581) #9	SNAPC5 (ENSSMRG00000021580) #11	RPL4 (ENSSMRG00000021574) #12	ZWILCH (ENSSMRG00000021573) #13	SMAD6 (ENSSMRG00000021572) #15	SMAD3 (ENSSMRG00000021571) #18	AAGAB (ENSSMRG00000021570) #19	IQCH (ENSSMRG00000021569) #20	C15orf61 (ENSSMRG00000021568) #21	MAP2K5 (ENSSMRG00000021567) #22	SKOR1 (ENSSMRG00000021566) #24	PIAS1 (ENSSMRG00000021565) #25	CALML4 (ENSSMRG00000021564) #26	CLN6 (ENSSMRG00000021563) #27	ENSSMRG00000021562	ITGA11 (ENSSMRG00000021561) #29	CORO2B (ENSSMRG00000021560) #30	ENSSMRG00000021559 #31	NOX5 (ENSSMRG00000021557) #34	GLCE (ENSSMRG00000021556) #35	PAQR5 (ENSSMRG00000021554) #36	KIF23 (ENSSMRG00000021553) #37	TLE3 (ENSSMRG00000021549)	UACA (ENSSMRG00000021548)	MORF4L2 (ENSSMRG00000021547)
Toxicofera	ANCESTRAL SPECIES	40	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00950000186456	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465.c #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35
Lizard	MODERN SPECIES	1079							ENSACAG00000005016 #36	ENSACAG00000004994	RPL4 (ENSACAG00000009759) #12	ZWILCH (ENSACAG00000009844) #13	SMAD6 (ENSACAG00000009899) #15	SMAD3 (ENSACAG00000009914) #18	AAGAB (ENSACAG00000010006) #19	IQCH (ENSACAG00000010052) #20	C15orf61 (ENSACAG00000038258) #21	MAP2K5 (ENSACAG00000010072) #22	PIAS1 (ENSACAG00000010183) #25	CALML4 (ENSACAG00000010259) #26	CLN6 (ENSACAG00000010272) #27	FEM1B (ENSACAG00000001361) #28
Elapidae	ANCESTRAL SPECIES	12	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b.d #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00950000186456	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465.c #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000159819	ENSGT00390000017697.a	ENSGT00390000016791	ENSGT00390000018400	ENSGT01040000240503.A.a.a
Indian cobra	MODERN SPECIES	14	DENND4A (ENSNNAG00000010330)	RAB11A (ENSNNAG00000010435)	MEGF11 (ENSNNAG00000010468)	DIS3L (ENSNNAG00000010799)	TIPIN (ENSNNAG00000010924) #7	MAP2K1 (ENSNNAG00000010963) #9	SNAPC5 (ENSNNAG00000011012) #11	RPL4 (ENSNNAG00000011026) #12	ZWILCH (ENSNNAG00000011099) #13	SMAD6 (ENSNNAG00000011230) #15	SMAD3 (ENSNNAG00000011272) #18	AAGAB (ENSNNAG00000011287) #19	ENSNNAG00000011356	IQCH (ENSNNAG00000011412) #20	C15orf61 (ENSNNAG00000011603) #21	MAP2K5 (ENSNNAG00000011631) #22	SKOR1 (ENSNNAG00000011796) #24	PIAS1 (ENSNNAG00000012101) #25	CLN6 (ENSNNAG00000012206) #27	ENSNNAG00000012296	ITGA11 (ENSNNAG00000012334) #29	CORO2B (ENSNNAG00000012805) #30	ENSNNAG00000012830 #31	NOX5 (ENSNNAG00000012871) #34	GLCE (ENSNNAG00000012927) #35	ADAMTS7 (ENSNNAG00000012990)	CIAO2A (ENSNNAG00000014216)	SPG11 (ENSNNAG00000014243)	EIF3J (ENSNNAG00000014307)	CTDSPL2 (ENSNNAG00000014328)	GOLM2 (ENSNNAG00000014360)
Elapidae_a	ANCESTRAL SPECIES	37	ENSGT00390000009486	ENSGT00940000155836.B.m	ENSGT00940000155836.B.n	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b.d #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465.c #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000159819	ENSGT00390000017697.a	ENSGT00390000016791	ENSGT00390000018400	ENSGT01040000240503.A.a.a	ENSGT00530000063675.a
Blue-lipped sea krait	MODERN SPECIES	4338																MAP2K5 (ENSLLTG00000017843) #22
Acanthophiinae	ANCESTRAL SPECIES	37	ENSGT00530000062962.b.a	ENSGT00390000009486	ENSGT00940000155836.B.m	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b.d #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465.c #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000159819	ENSGT00390000016791	ENSGT00390000018400	ENSGT01040000240503.A.a.a	ENSGT00530000063675.a	ENSGT00940000156346.g
Eastern brown snake	MODERN SPECIES	43	HACD3 (ENSPTXG00000015568)	INTS14 (ENSPTXG00000015567)	DENND4A (ENSPTXG00000015565)	RAB11A (ENSPTXG00000015564)	MEGF11 (ENSPTXG00000015560)	DIS3L (ENSPTXG00000015557)	TIPIN (ENSPTXG00000015555) #7	MAP2K1 (ENSPTXG00000015554) #9	SNAPC5 (ENSPTXG00000015552) #11	RPL4 (ENSPTXG00000015545) #12	SMAD6 (ENSPTXG00000015543) #15	SMAD3 (ENSPTXG00000015540) #18	AAGAB (ENSPTXG00000015539) #19	IQCH (ENSPTXG00000015536) #20	C15orf61 (ENSPTXG00000015534) #21	MAP2K5 (ENSPTXG00000015531) #22	ENSPTXG00000015529	PIAS1 (ENSPTXG00000015528) #25	CALML4 (ENSPTXG00000015527) #26	CLN6 (ENSPTXG00000015526) #27	ENSPTXG00000015525	ITGA11 (ENSPTXG00000015524) #29	CORO2B (ENSPTXG00000015523) #30	ENSPTXG00000015522 #31	NOX5 (ENSPTXG00000015521) #34	GLCE (ENSPTXG00000015519) #35	ADAMTS7 (ENSPTXG00000015512)	SPG11 (ENSPTXG00000015497)	EIF3J (ENSPTXG00000015491)	CTDSPL2 (ENSPTXG00000015488)	ENSPTXG00000015487
Mainland tiger snake	MODERN SPECIES	49	DPP8 (ENSNSUG00000002945)	HACD3 (ENSNSUG00000003778)	INTS14 (ENSNSUG00000003780)	ENSNSUG00000003906	RAB11A (ENSNSUG00000003908)	MEGF11 (ENSNSUG00000003910)	ENSNSUG00000003922	TIPIN (ENSNSUG00000003924) #7	MAP2K1 (ENSNSUG00000003931) #9	SNAPC5 (ENSNSUG00000003966) #11	ENSNSUG00000003967 #12	ZWILCH (ENSNSUG00000003975) #13	SMAD3 (ENSNSUG00000003978) #18	AAGAB (ENSNSUG00000003997) #19	C15orf61 (ENSNSUG00000004019) #21	MAP2K5 (ENSNSUG00000004022) #22
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00950000186456	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00950000186456	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00950000186456	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Emydidae	ANCESTRAL SPECIES	21	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764.b #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Three-toed box turtle	MODERN SPECIES	27	DENND4A (ENSTMTG00000007680)	RAB11A (ENSTMTG00000007735)	MEGF11 (ENSTMTG00000007756)	DIS3L (ENSTMTG00000007906)	ENSTMTG00000007940 #7	MAP2K1 (ENSTMTG00000007966) #9	ENSTMTG00000007987	ENSTMTG00000008003 #12	ZWILCH (ENSTMTG00000008057) #13	LCTL (ENSTMTG00000008371) #14	SMAD6 (ENSTMTG00000008403) #15	SMAD3 (ENSTMTG00000008413) #18	AAGAB (ENSTMTG00000008426) #19	IQCH (ENSTMTG00000008467) #20	ENSTMTG00000008700 #21	MAP2K5 (ENSTMTG00000008725) #22	SKOR1 (ENSTMTG00000008807) #24	PIAS1 (ENSTMTG00000008856) #25	CALML4 (ENSTMTG00000008891) #26	CLN6 (ENSTMTG00000008908) #27	FEM1B (ENSTMTG00000008924) #28	ITGA11 (ENSTMTG00000008937) #29	ENSTMTG00000009016 #30	ENSTMTG00000009040 #31	NOX5 (ENSTMTG00000009057) #34	GLCE (ENSTMTG00000009094) #35	PAQR5 (ENSTMTG00000009106) #36	KIF23 (ENSTMTG00000009131) #37	TLE3 (ENSTMTG00000009181)	UACA (ENSTMTG00000009253)	MORF4L2 (ENSTMTG00000009290)
painted turtle	MODERN SPECIES	742											SMAD6 (ENSCPBG00000025564) #15	SMAD3 (ENSCPBG00000025562) #18	AAGAB (ENSCPBG00000025560) #19	IQCH (ENSCPBG00000025554) #20	C15orf61 (ENSCPBG00000025551) #21	MAP2K5 (ENSCPBG00000025545) #22	SKOR1 (ENSCPBG00000025542) #24	PIAS1 (ENSCPBG00000025540) #25	CALML4 (ENSCPBG00000025539) #26	CLN6 (ENSCPBG00000025538) #27	FEM1B (ENSCPBG00000025536) #28	ITGA11 (ENSCPBG00000025526) #29	CORO2B (ENSCPBG00000025523) #30	ENSCPBG00000025519 #31	NOX5 (ENSCPBG00000025517) #34	GLCE (ENSCPBG00000025514) #35	PAQR5 (ENSCPBG00000025513) #36	ENSCPBG00000025512 #37	ENSCPBG00000025510 #37	TLE3 (ENSCPBG00000025506)	UACA (ENSCPBG00000025503)
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000154914	ENSGT00960000193170	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00950000186456	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Goode s thornscrub tortoise	MODERN SPECIES	1	ENSGEVG00005005833	MEGF11 (ENSGEVG00005005633)	DIS3L (ENSGEVG00005005574)	TIPIN (ENSGEVG00005005547) #7	MAP2K1 (ENSGEVG00005005509) #9	SNAPC5 (ENSGEVG00005005478) #11	RPL4 (ENSGEVG00005005421) #12	ZWILCH (ENSGEVG00005005317) #13	LCTL (ENSGEVG00005005207) #14	SMAD6 (ENSGEVG00005005184) #15	SMAD3 (ENSGEVG00005005160) #18	AAGAB (ENSGEVG00005005135) #19	ENSGEVG00005005107	IQCH (ENSGEVG00005005068) #20	C15orf61 (ENSGEVG00005005051) #21	MAP2K5 (ENSGEVG00005004903) #22	SKOR1 (ENSGEVG00005004798) #24	PIAS1 (ENSGEVG00005004663) #25	CALML4 (ENSGEVG00005004576) #26	CLN6 (ENSGEVG00005004545) #27	FEM1B (ENSGEVG00005004527) #28	ITGA11 (ENSGEVG00005004365) #29	CORO2B (ENSGEVG00005004248) #30	ENSGEVG00005004193 #31	NOX5 (ENSGEVG00005004166) #34	GLCE (ENSGEVG00005004077) #35	ENSGEVG00005012114	PAQR5 (ENSGEVG00005012089) #36	KIF23 (ENSGEVG00005011913) #37	TLE3 (ENSGEVG00005011815)	UACA (ENSGEVG00005011665)
Abingdon island giant tortoise	MODERN SPECIES	2468		ATXN1 (ENSCABG00000005586)	ENSCABG00000005592	RBM24 (ENSCABG00000005598)	CAP2 (ENSCABG00000005601)	FAM8A1 (ENSCABG00000005603)	NUP153 (ENSCABG00000005639)	ENSCABG00000006965	PAK1IP1 (ENSCABG00000006969)	TMEM14C (ENSCABG00000006974)	ENSCABG00000006977	SMAD3 (ENSCABG00000006979) #18	AAGAB (ENSCABG00000006983) #19	IQCH (ENSCABG00000006989) #20	C15orf61 (ENSCABG00000007006) #21	MAP2K5 (ENSCABG00000007008) #22	SKOR1 (ENSCABG00000007009) #24	PIAS1 (ENSCABG00000007017) #25	CALML4 (ENSCABG00000007026) #26	CLN6 (ENSCABG00000007043) #27	FEM1B (ENSCABG00000007048) #28	ITGA11 (ENSCABG00000007055) #29	CORO2B (ENSCABG00000007062) #30	ENSCABG00000007077 #31	NOX5 (ENSCABG00000007079) #34	GLCE (ENSCABG00000007080) #35	ENSCABG00000007082 #36	ENSCABG00000007083 #36	KIF23 (ENSCABG00000007090) #37	ENSCABG00000007154	TLE3 (ENSCABG00000007160)
Chinese turtle	MODERN SPECIES	1779													SMAD3 (ENSPSIG00000010579) #18	AAGAB (ENSPSIG00000011201) #19	IQCH (ENSPSIG00000011323) #20	MAP2K5 (ENSPSIG00000011712) #22	PIAS1 (ENSPSIG00000012489) #25	CALML4 (ENSPSIG00000012516) #26	CLN6 (ENSPSIG00000012575) #27	FEM1B (ENSPSIG00000012891) #28	ITGA11 (ENSPSIG00000012913) #29	CORO2B (ENSPSIG00000014178) #30	ENSPSIG00000014700 #31	NOX5 (ENSPSIG00000014865) #34	GLCE (ENSPSIG00000015287) #35	PAQR5 (ENSPSIG00000015595) #36	KIF23 (ENSPSIG00000015679) #37	ENSPSIG00000016179	TLE3 (ENSPSIG00000016264)	UACA (ENSPSIG00000016716)	MORF4L2 (ENSPSIG00000017080)
Archosauria	ANCESTRAL SPECIES	9	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Australian saltwater crocodile	MODERN SPECIES	31	DENND4A (ENSCPRG00005000499)	RAB11A (ENSCPRG00005000532)	MEGF11 (ENSCPRG00005000552)	DIS3L (ENSCPRG00005000594)	TIPIN (ENSCPRG00005000607) #7	MAP2K1 (ENSCPRG00005000623) #9	SNAPC5 (ENSCPRG00005000626) #11	RPL4 (ENSCPRG00005000630) #12	ZWILCH (ENSCPRG00005000651) #13	LCTL (ENSCPRG00005000669) #14	SMAD6 (ENSCPRG00005000698) #15	SMAD3 (ENSCPRG00005000730) #18	AAGAB (ENSCPRG00005000756) #19	IQCH (ENSCPRG00005000770) #20	C15orf61 (ENSCPRG00005000791) #21	MAP2K5 (ENSCPRG00005000813) #22	PIAS1 (ENSCPRG00005000826) #25	CALML4 (ENSCPRG00005000835) #26	CLN6 (ENSCPRG00005000877) #27	ENSCPRG00005000881	ITGA11 (ENSCPRG00005000885) #29	CORO2B (ENSCPRG00005000933) #30	ENSCPRG00005000951 #31	ENSCPRG00005000961	NOX5 (ENSCPRG00005000970) #34	ENSCPRG00005000980	GLCE (ENSCPRG00005000985) #35	ENSCPRG00005000993 #36	ENSCPRG00005000997 #36	ENSCPRG00005001006 #37	TLE3 (ENSCPRG00005001068)
Aves	ANCESTRAL SPECIES	14	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Neognathae	ANCESTRAL SPECIES	11	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Anatidae	ANCESTRAL SPECIES	36	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689.c #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a	ENSGT00950000182965.a.b.b.b
Pink-footed goose	MODERN SPECIES	52	RAB11A (ENSABRG00000008748)	MEGF11 (ENSABRG00000008723)	DIS3L (ENSABRG00000008682)	TIPIN (ENSABRG00000008669) #7	ENSABRG00000008668	MAP2K1 (ENSABRG00000008635) #9	SNAPC5 (ENSABRG00000008617) #11	RPL4 (ENSABRG00000008586) #12	ZWILCH (ENSABRG00000008567) #13	LCTL (ENSABRG00000008534) #14	SMAD6 (ENSABRG00000008516) #15	SMAD3 (ENSABRG00000008486) #18	AAGAB (ENSABRG00000008468) #19	IQCH (ENSABRG00000008459) #20	C15orf61 (ENSABRG00000008455) #21	MAP2K5 (ENSABRG00000008420) #22	PIAS1 (ENSABRG00000008359) #25	CALML4 (ENSABRG00000008336) #26	CLN6 (ENSABRG00000008307) #27	ENSABRG00000008298	ITGA11 (ENSABRG00000007970) #29	CORO2B (ENSABRG00000007931) #30	ENSABRG00000007925 #31	ENSABRG00000007920	NOX5 (ENSABRG00000007909) #34	GLCE (ENSABRG00000007906) #35	PAQR5 (ENSABRG00000007901) #36	KIF23 (ENSABRG00000007848) #37	ENSABRG00000007124	UACA (ENSABRG00000007097)	MORF4L1 (ENSABRG00000007094)
Duck	MODERN SPECIES	2	DENND4A (ENSAPLG00000014243)	RAB11A (ENSAPLG00000014962)	MEGF11 (ENSAPLG00000015095)	DIS3L (ENSAPLG00000015294)	TIPIN (ENSAPLG00000015332) #7	MAP2K1 (ENSAPLG00000015480) #9	SNAPC5 (ENSAPLG00000001863) #11	RPL4 (ENSAPLG00000015853) #12	ZWILCH (ENSAPLG00000000968) #13	ENSAPLG00000028241 #14	SMAD6 (ENSAPLG00000000997) #15	SMAD3 (ENSAPLG00000007006) #18	AAGAB (ENSAPLG00000007346) #19	IQCH (ENSAPLG00000007592) #20	C15orf61 (ENSAPLG00000001076) #21	MAP2K5 (ENSAPLG00000007755) #22	ENSAPLG00000002495 #25	CALML4 (ENSAPLG00000003092) #26	CLN6 (ENSAPLG00000003181) #27	FEM1B (ENSAPLG00000003592) #28	ITGA11 (ENSAPLG00000003663) #29	ENSAPLG00000029500 #30	CORO2B (ENSAPLG00000027282) #30	ENSAPLG00000016831 #31	NOX5 (ENSAPLG00000005589) #34	GLCE (ENSAPLG00000005999) #35	ENSAPLG00000018841 #36	ENSAPLG00000025612	KIF23 (ENSAPLG00000012518) #37	TLE3 (ENSAPLG00000029482)	ENSAPLG00000018292
Phasianidae	ANCESTRAL SPECIES	11	ENSGT01030000234532.B.e.b	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT01030000234532.B.e.b	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Turkey	MODERN SPECIES	3	SLC24A1 (ENSMGAG00000009715)	DENND4A (ENSMGAG00000009728)	RAB11A (ENSMGAG00000009797)	MEGF11 (ENSMGAG00000009776)	DIS3L (ENSMGAG00000009805)	TIPIN (ENSMGAG00000009857) #7	MAP2K1 (ENSMGAG00000009864) #9	ENSMGAG00000019153	RPL4 (ENSMGAG00000009822) #12	ZWILCH (ENSMGAG00000009851) #13	SMAD6 (ENSMGAG00000009875) #15	SMAD3 (ENSMGAG00000009879) #18	AAGAB (ENSMGAG00000009906) #19	IQCH (ENSMGAG00000009928) #20	C15orf61 (ENSMGAG00000022676) #21	MAP2K5 (ENSMGAG00000009937) #22	PIAS1 (ENSMGAG00000009994) #25	CALML4 (ENSMGAG00000010048) #26	CLN6 (ENSMGAG00000010054) #27	ENSMGAG00000010069	ITGA11 (ENSMGAG00000010073) #29	CORO2B (ENSMGAG00000010149) #30	ENSMGAG00000010171 #31	NOX5 (ENSMGAG00000010183) #34	GLCE (ENSMGAG00000010210) #35	PAQR5 (ENSMGAG00000010133) #36	KIF23 (ENSMGAG00000010217) #37	TLE3 (ENSMGAG00000010249)	UACA (ENSMGAG00000010428)	ENSMGAG00000010385	ENSMGAG00000010348
Chicken	MODERN SPECIES	1	SLC24A1 (ENSGALG00010017819)	DENND4A (ENSGALG00010017830)	RAB11A (ENSGALG00010017870)	MEGF11 (ENSGALG00010017904)	DIS3L (ENSGALG00010017941)	TIPIN (ENSGALG00010017956) #7	MAP2K1 (ENSGALG00010018000) #9	SNAPC5 (ENSGALG00010018020) #11	RPL4 (ENSGALG00010018036) #12	ZWILCH (ENSGALG00010018042) #13	SMAD6 (ENSGALG00010018054) #15	SMAD3 (ENSGALG00010018099) #18	AAGAB (ENSGALG00010018150) #19	IQCH (ENSGALG00010018192) #20	C15orf61 (ENSGALG00010016968) #21	MAP2K5 (ENSGALG00010017039) #22	SKOR1 (ENSGALG00010017146) #24	PIAS1 (ENSGALG00010017264) #25	CALML4 (ENSGALG00010017314) #26	CLN6 (ENSGALG00010017327) #27	FEM1B (ENSGALG00010017354) #28	ENSGALG00010017382	ITGA11 (ENSGALG00010017403) #29	CORO2B (ENSGALG00010017482) #30	ANP32A (ENSGALG00010017558) #31	NOX5 (ENSGALG00010017588) #34	GLCE (ENSGALG00010016452) #35	PAQR5 (ENSGALG00010016459) #36	KIF23 (ENSGALG00010016498) #37	TLE3 (ENSGALG00010020011)	UACA (ENSGALG00010020056)
Japanese quail	MODERN SPECIES	1	SLC24A1 (ENSCJPG00005020804)	DENND4A (ENSCJPG00005020807)	RAB11A (ENSCJPG00005020908)	MEGF11 (ENSCJPG00005020910)	DIS3L (ENSCJPG00005020941)	TIPIN (ENSCJPG00005020942) #7	MAP2K1 (ENSCJPG00005020944) #9	SNAPC5 (ENSCJPG00005020958) #11	RPL4 (ENSCJPG00005020961) #12	ZWILCH (ENSCJPG00005020968) #13	SMAD6 (ENSCJPG00005020969) #15	SMAD3 (ENSCJPG00005020970) #18	AAGAB (ENSCJPG00005020971) #19	IQCH (ENSCJPG00005020972) #20	C15orf61 (ENSCJPG00005020973) #21	MAP2K5 (ENSCJPG00005020975) #22	SKOR1 (ENSCJPG00005020991) #24	PIAS1 (ENSCJPG00005020993) #25	CALML4 (ENSCJPG00005020995) #26	CLN6 (ENSCJPG00005020996) #27	FEM1B (ENSCJPG00005020997) #28	ITGA11 (ENSCJPG00005020998) #29	CORO2B (ENSCJPG00005020999) #30	ENSCJPG00005021000 #31	GLCE (ENSCJPG00005021002) #35	PAQR5 (ENSCJPG00005021003) #36	KIF23 (ENSCJPG00005021004) #37	ENSCJPG00005021053	ENSCJPG00005021054	UACA (ENSCJPG00005021056)	MORF4L2 (ENSCJPG00005021057)
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Golden eagle	MODERN SPECIES	21	SLC24A1 (ENSACCG00020009936)	DENND4A (ENSACCG00020009959)	RAB11A (ENSACCG00020009992)	MEGF11 (ENSACCG00020010081)	DIS3L (ENSACCG00020010156)	TIPIN (ENSACCG00020010172) #7	MAP2K1 (ENSACCG00020010187) #9	SNAPC5 (ENSACCG00020010201) #11	RPL4 (ENSACCG00020000310) #12	ZWILCH (ENSACCG00020000434) #13	LCTL (ENSACCG00020000480) #14	SMAD6 (ENSACCG00020000507) #15	SMAD3 (ENSACCG00020000522) #18	AAGAB (ENSACCG00020000560) #19	C15orf61 (ENSACCG00020000661) #21	MAP2K5 (ENSACCG00020000704) #22	SKOR1 (ENSACCG00020000753) #24	PIAS1 (ENSACCG00020000781) #25	CALML4 (ENSACCG00020000839) #26	CLN6 (ENSACCG00020000865) #27	FEM1B (ENSACCG00020000880) #28	ITGA11 (ENSACCG00020001060) #29	CORO2B (ENSACCG00020001194) #30	ENSACCG00020001229 #31	NOX5 (ENSACCG00020001264) #34	GLCE (ENSACCG00020001293) #35	PAQR5 (ENSACCG00020001307) #36	KIF23 (ENSACCG00020001359) #37	TLE3 (ENSACCG00020001470)	UACA (ENSACCG00020001551)	MORF4L2 (ENSACCG00020001635)
Kakapo	MODERN SPECIES	1	RAB11A (ENSSHBG00005009201)	ENSSHBG00005009181	ENSSHBG00005009158	DIS3L (ENSSHBG00005009084)	TIPIN (ENSSHBG00005009068) #7	MAP2K1 (ENSSHBG00005009053) #9	SNAPC5 (ENSSHBG00005009047) #11	RPL4 (ENSSHBG00005009017) #12	ZWILCH (ENSSHBG00005008951) #13	LCTL (ENSSHBG00005008922) #14	SMAD6 (ENSSHBG00005000779) #15	SMAD3 (ENSSHBG00005000770) #18	AAGAB (ENSSHBG00005000737) #19	IQCH (ENSSHBG00005000728) #20	C15orf61 (ENSSHBG00005000716) #21	MAP2K5 (ENSSHBG00005000699) #22	SKOR1 (ENSSHBG00005011833) #24	PIAS1 (ENSSHBG00005011813) #25	CALML4 (ENSSHBG00005011797) #26	CLN6 (ENSSHBG00005011786) #27	FEM1B (ENSSHBG00005011772) #28	ITGA11 (ENSSHBG00005011743) #29	CORO2B (ENSSHBG00005011717) #30	ENSSHBG00005011703 #31	NOX5 (ENSSHBG00005011668) #34	GLCE (ENSSHBG00005011650) #35	PAQR5 (ENSSHBG00005011637) #36	KIF23 (ENSSHBG00005011580) #37	TLE3 (ENSSHBG00005011543)	UACA (ENSSHBG00005011394)	MORF4L2 (ENSSHBG00005011335)
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Great tit	MODERN SPECIES	1	DENND4A (ENSPMJG00000009918)	RAB11A (ENSPMJG00000009921)	MEGF11 (ENSPMJG00000009924)	DIS3L (ENSPMJG00000009931)	TIPIN (ENSPMJG00000009939) #7	MAP2K1 (ENSPMJG00000009964) #9	SNAPC5 (ENSPMJG00000009967) #11	RPL4 (ENSPMJG00000009971) #12	ZWILCH (ENSPMJG00000009977) #13	LCTL (ENSPMJG00000009979) #14	SMAD6 (ENSPMJG00000009983) #15	SMAD3 (ENSPMJG00000009991) #18	AAGAB (ENSPMJG00000009992) #19	IQCH (ENSPMJG00000009995) #20	C15orf61 (ENSPMJG00000009998) #21	MAP2K5 (ENSPMJG00000010012) #22	PIAS1 (ENSPMJG00000010016) #25	ENSPMJG00000010020 #26	FEM1B (ENSPMJG00000010022) #28	ITGA11 (ENSPMJG00000010024) #29	ENSPMJG00000010045 #30	ENSPMJG00000010057 #30	ENSPMJG00000010061 #31	NOX5 (ENSPMJG00000010066) #34	GLCE (ENSPMJG00000010071) #35	KIF23 (ENSPMJG00000010072) #37	TLE3 (ENSPMJG00000010074)	ENSPMJG00000010244	ENSPMJG00000010262	UACA (ENSPMJG00000010263)	MORF4L2 (ENSPMJG00000010268)
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT01030000234532.B.e.b	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a
Flycatcher	MODERN SPECIES	1	RORA (ENSFALG00000012589)	VPS13C (ENSFALG00000012641)	ENSFALG00000012743	TLN2 (ENSFALG00000012750)	TPM1 (ENSFALG00000026833)	LACTB (ENSFALG00000012785)	RPL4 (ENSFALG00000024664) #12	ZWILCH (ENSFALG00000012802) #13	LCTL (ENSFALG00000012819) #14	ENSFALG00000023761	SMAD6 (ENSFALG00000012842) #15	SMAD3 (ENSFALG00000028582) #18	AAGAB (ENSFALG00000028875) #19	IQCH (ENSFALG00000012896) #20	ENSFALG00000012905	MAP2K5 (ENSFALG00000028460) #22	PIAS1 (ENSFALG00000010137) #25	ENSFALG00000028365	CALML4 (ENSFALG00000010143) #26	CLN6 (ENSFALG00000023153) #27	FEM1B (ENSFALG00000010149) #28	ITGA11 (ENSFALG00000010154) #29	CORO2B (ENSFALG00000010159) #30	ENSFALG00000026588 #31	NOX5 (ENSFALG00000026351) #34	ENSFALG00000010185 #35	PAQR5 (ENSFALG00000024286) #36	KIF23 (ENSFALG00000010189) #37	TLE3 (ENSFALG00000010209)	UACA (ENSFALG00000005154)	ENSFALG00000026728
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT01060000252718	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240.oc #27	ENSGT00940000164138	ENSGT00400000022240.nc #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b
Medium ground finch	MODERN SPECIES	69	RAB11A (ENSGFOG00000011557)	MEGF11 (ENSGFOG00000011585)	DIS3L (ENSGFOG00000011782)	TIPIN (ENSGFOG00000011794) #7	MAP2K1 (ENSGFOG00000011801) #9	ENSGFOG00000011806	RPL4 (ENSGFOG00000011811) #12	ZWILCH (ENSGFOG00000011836) #13	LCTL (ENSGFOG00000011846) #14	SMAD6 (ENSGFOG00000011856) #15	SMAD3 (ENSGFOG00000011865) #18	ENSGFOG00000011872 #19	ENSGFOG00000011876 #19	IQCH (ENSGFOG00000011884) #20	ENSGFOG00000011897 #21	MAP2K5 (ENSGFOG00000011911) #22	PIAS1 (ENSGFOG00000011939) #25	CALML4 (ENSGFOG00000011946) #26	CLN6 (ENSGFOG00000011952) #27	ENSGFOG00000011958	ITGA11 (ENSGFOG00000011965) #29	CORO2B (ENSGFOG00000011982) #30	ENSGFOG00000011990 #31	NOX5 (ENSGFOG00000011998) #34	GLCE (ENSGFOG00000012008) #35	ENSGFOG00000012011	KIF23 (ENSGFOG00000012017) #37	TLE3 (ENSGFOG00000012034)	UACA (ENSGFOG00000012349)	MORF4L2 (ENSGFOG00000012359)	ADAMTS7 (ENSGFOG00000012371)
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT01060000252718	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00960000188521	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240.nc #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043.e #35	ENSGT00990000212087	ENSGT00390000006043.f #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b
Zebra finch	MODERN SPECIES	1	DENND4A (ENSTGUG00000009220)	RAB11A (ENSTGUG00000009279)	MEGF11 (ENSTGUG00000009293)	DIS3L (ENSTGUG00000009315)	TIPIN (ENSTGUG00000009358) #7	ENSTGUG00000019914	MAP2K1 (ENSTGUG00000009363) #9	RPL4 (ENSTGUG00000009403) #12	ZWILCH (ENSTGUG00000009439) #13	LCTL (ENSTGUG00000009457) #14	SMAD6 (ENSTGUG00000009467) #15	SMAD3 (ENSTGUG00000009470) #18	AAGAB (ENSTGUG00000009497) #19	IQCH (ENSTGUG00000009504) #20	ENSTGUG00000009527	MAP2K5 (ENSTGUG00000009531) #22	ENSTGUG00000025021 #24	ENSTGUG00000009553 #25	ENSTGUG00000029271 #26	ENSTGUG00000021449 #27	ENSTGUG00000024498 #28	ENSTGUG00000009614 #29	ENSTGUG00000020847 #30	ANP32A (ENSTGUG00000009670) #31	ENSTGUG00000026437 #34	ENSTGUG00000019518 #35	ENSTGUG00000024602	ENSTGUG00000024307 #36	ENSTGUG00000009704 #37	ENSTGUG00000009715	ENSTGUG00000009720
Common canary	MODERN SPECIES	12	MEGF11 (ENSSCAG00000010255)	DIS3L (ENSSCAG00000010324)	TIPIN (ENSSCAG00000010328) #7	MAP2K1 (ENSSCAG00000010333) #9	ENSSCAG00000010341	RPL4 (ENSSCAG00000010344) #12	ZWILCH (ENSSCAG00000010364) #13	LCTL (ENSSCAG00000010374) #14	ENSSCAG00000010394	ENSSCAG00000010404	SMAD6 (ENSSCAG00000010407) #15	SMAD3 (ENSSCAG00000010414) #18	AAGAB (ENSSCAG00000010418) #19	IQCH (ENSSCAG00000010432) #20	ENSSCAG00000010438	MAP2K5 (ENSSCAG00000010448) #22	PIAS1 (ENSSCAG00000010481) #25	CALML4 (ENSSCAG00000010490) #26	ENSSCAG00000010493 #27	ENSSCAG00000010498 #27	ENSSCAG00000010505	ITGA11 (ENSSCAG00000010528) #29	CORO2B (ENSSCAG00000010620) #30	ENSSCAG00000010637 #31	NOX5 (ENSSCAG00000010650) #34	GLCE (ENSSCAG00000010658) #35	ENSSCAG00000010664	PAQR5 (ENSSCAG00000010668) #36	KIF23 (ENSSCAG00000010811) #37	TLE3 (ENSSCAG00000011497)	ENSSCAG00000012151
African ostrich	MODERN SPECIES	336							MAP2K1 (ENSSCUG00000002980) #9	ENSSCUG00000002979	RPL4 (ENSSCUG00000002974) #12	ZWILCH (ENSSCUG00000002970) #13	SMAD3 (ENSSCUG00000002964) #18	ENSSCUG00000002962 #19	IQCH (ENSSCUG00000002961) #20	ENSSCUG00000002960	ENSSCUG00000002959	MAP2K5 (ENSSCUG00000002958) #22	PIAS1 (ENSSCUG00000002957) #25	CALML4 (ENSSCUG00000002956) #26	CLN6 (ENSSCUG00000002955) #27	ENSSCUG00000002954	ITGA11 (ENSSCUG00000002951) #29	ENSSCUG00000002948 #31	GLCE (ENSSCUG00000002945) #35	ENSSCUG00000002943 #36	ENSSCUG00000002941 #36	KIF23 (ENSSCUG00000002925) #37
Anura	ANCESTRAL SPECIES		ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000010331 #11	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000158146 #15	ENSGT00940000153499.b.b #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000161115 #28	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT00940000157475	ENSGT00950000182965.a.a	ENSGT00940000159819
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000007739	DIS3L (ENSLLEG00000007758)	TIPIN (ENSLLEG00000007891) #7	ENSLLEG00000007941 #9	SNAPC5 (ENSLLEG00000008005) #11	ENSLLEG00000008024	ENSLLEG00000008052 #12	ZWILCH (ENSLLEG00000008260) #13	LCTL (ENSLLEG00000008419) #14	ENSLLEG00000009059	SMAD6 (ENSLLEG00000009090) #15	SMAD3 (ENSLLEG00000009194) #18	AAGAB (ENSLLEG00000009905) #19	IQCH (ENSLLEG00000009988) #20	C15orf61 (ENSLLEG00000010164) #21	MAP2K5 (ENSLLEG00000010224) #22	SKOR1 (ENSLLEG00000010653) #24	ENSLLEG00000010729	PIAS1 (ENSLLEG00000010874) #25	CALML4 (ENSLLEG00000011194) #26	CLN6 (ENSLLEG00000011246) #27	FEM1B (ENSLLEG00000011357) #28	ITGA11 (ENSLLEG00000011407) #29	ENSLLEG00000011591	CORO2B (ENSLLEG00000011668) #30	ENSLLEG00000012168 #31	NOX5 (ENSLLEG00000012326) #34	GLCE (ENSLLEG00000012450) #35	ENSLLEG00000012518	PAQR5 (ENSLLEG00000012596) #36	KIF23 (ENSLLEG00000012720) #37
Frog	MODERN SPECIES	3	dennd4a (ENSXETG00000006641)	rab11a (ENSXETG00000006639)	megf11 (ENSXETG00000015852)	dis3l (ENSXETG00000015865)	tipin (ENSXETG00000024752) #7	map2k1 (ENSXETG00000015887) #9	snapc5 (ENSXETG00000015893)	rpl4 (ENSXETG00000015898) #12	zwilch (ENSXETG00000015894) #13	lctl (ENSXETG00000015904) #14	smad6 (ENSXETG00000015939) #15	smad3 (ENSXETG00000007804) #18	aagab (ENSXETG00000007805) #19	pnlip (ENSXETG00000007807) #20	c15orf61 (ENSXETG00000030493) #21	map2k5 (ENSXETG00000007809) #22	ENSXETG00000044421	skor1 (ENSXETG00000007811) #24	pias1 (ENSXETG00000007813) #25	calml4 (ENSXETG00000007814) #26	cln6 (ENSXETG00000029932) #27	ENSXETG00000044370	fem1b (ENSXETG00000007817)	itga11 (ENSXETG00000007816) #29	coro2b (ENSXETG00000025308) #30	anp32a (ENSXETG00000007821) #31	nox5 (ENSXETG00000007819) #34	glce (ENSXETG00000007825) #35	ENSXETG00000046233	paqr5 (ENSXETG00000007827) #36	kif23 (ENSXETG00000007829) #37
Coelacanth	MODERN SPECIES	951											SMAD6 (ENSLACG00000005364) #15	SMAD3 (ENSLACG00000010552) #18	AAGAB (ENSLACG00000011060) #19	IQCH (ENSLACG00000011619) #20	C15orf61 (ENSLACG00000012466) #21	MAP2K5 (ENSLACG00000012658) #22	SKOR1 (ENSLACG00000014295) #24
Actinopterygii	ANCESTRAL SPECIES	92	ENSGT00390000009486	ENSGT01030000234532.B.e.b	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000153499.b.b.d #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.a
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	8	ENSECRG00000017340	ENSECRG00000017450	dis3l (ENSECRG00000017497)	tipin (ENSECRG00000017552) #7	map2k1 (ENSECRG00000017617) #9	rpl4 (ENSECRG00000017761) #12	zwilch (ENSECRG00000017849) #13	lctla (ENSECRG00000017984) #14	crybgx (ENSECRG00000018775)	snapc5 (ENSECRG00000018817) #11	smad6a (ENSECRG00000018835) #15	smad3b (ENSECRG00000018886) #18	aagab (ENSECRG00000019047) #19	iqch (ENSECRG00000019116) #20	zgc:162898 (ENSECRG00000019374) #21	map2k5 (ENSECRG00000019409) #22	ENSECRG00000019494 #24	ENSECRG00000019525 #25	PIAS1 (ENSECRG00000019551) #25	calml4a (ENSECRG00000019589) #26	hmg20a (ENSECRG00000019610)	PEAK1 (ENSECRG00000019637)	ENSECRG00000019664	ppib (ENSECRG00000019696)	PCLAF (ENSECRG00000019739)	csnk1g1 (ENSECRG00000019804)	ENSECRG00000020166	ENSECRG00000020214	trip4 (ENSECRG00000020251)	znf609a (ENSECRG00000020289)	senp8 (ENSECRG00000020323)
Reedfish	MODERN SPECIES	344																map2k5 (ENSECRG00000014745) #22	ENSECRG00000014816	ENSECRG00000014827 #24	ENSECRG00000014865	ENSECRG00000014883	ENSECRG00000014900 #25	ENSECRG00000014924
Neopterygii	ANCESTRAL SPECIES	85	ENSGT00940000154914	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244	ENSGT00940000155333.B	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000153499.b.b.d #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00940000157859 #26	ENSGT00400000022240 #27	ENSGT00940000164138	ENSGT00940000155465 #29	ENSGT00940000158689 #30	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000162591 #34	ENSGT00390000006043 #35	ENSGT00940000158844 #36	ENSGT00940000155837 #37	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.a
Spotted gar	MODERN SPECIES	669	rab11a (ENSLOCG00000013835)	ENSLOCG00000013837	dis3l (ENSLOCG00000013846)	tipin (ENSLOCG00000013854) #7	map2k1 (ENSLOCG00000013858) #9	rpl4 (ENSLOCG00000013867) #12	zwilch (ENSLOCG00000013873) #13	lctla (ENSLOCG00000013878) #14	crybgx (ENSLOCG00000013888)	snapc5 (ENSLOCG00000013891) #11	smad6a (ENSLOCG00000013892) #15	smad3b (ENSLOCG00000013897) #18	aagab (ENSLOCG00000013907) #19	iqch (ENSLOCG00000013914) #20	zgc:162898 (ENSLOCG00000013920) #21	map2k5 (ENSLOCG00000013923) #22	skor1a (ENSLOCG00000013929) #24	PIAS1 (ENSLOCG00000013933) #25	calml4a (ENSLOCG00000013940) #26	CLN6 (ENSLOCG00000013946) #27	ENSLOCG00000013948	itga11a (ENSLOCG00000013952) #29	CORO2B (ENSLOCG00000013967) #30	anp32a (ENSLOCG00000013972) #31	NOX5 (ENSLOCG00000013975) #34	glcea (ENSLOCG00000013983) #35	paqr5a (ENSLOCG00000013987) #36	kif23 (ENSLOCG00000013995) #37	tle3a (ENSLOCG00000014008)	UACA (ENSLOCG00000014022)	morf4l1 (ENSLOCG00000014029)
Osteoglossocephalai	ANCESTRAL SPECIES	148	ENSGT01030000234532.B.e.b.f	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000154914	ENSGT00940000155333.A	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000018145 #12	ENSGT00390000013696 #13	ENSGT00940000157369 #14	ENSGT00940000153499.b.b.d #18	ENSGT00390000007218 #19	ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT01030000234534.B.a.b	ENSGT00950000182965.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837 #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00940000162591 #34	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00940000155465.j #29	ENSGT00940000164138
Osteoglossiformes	ANCESTRAL SPECIES	37	ENSGT00530000063675.a.n	ENSGT01040000240503.A.a.a.e	ENSGT00390000018400.a	ENSGT00940000154914	ENSGT00940000155333.A	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000153487.b.b #9	ENSGT00390000018145 #12	ENSGT00940000157369 #14	ENSGT00940000165890	ENSGT00940000158146 #15	ENSGT00940000153499.b.b.d #18	ENSGT00390000007218 #19	ENSGT00390000015942 #21	ENSGT00940000157505 #22	ENSGT00940000158440 #24	ENSGT01030000234539.a.a.b.a.b #25	ENSGT00950000182965.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837 #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00940000162591 #34	ENSGT00950000182907.a.b.b.b.a #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00940000164138	ENSGT00940000159819	ENSGT00940000154617.B.e
Asian bonytongue	MODERN SPECIES	2										lctla (ENSSFOG00015008481) #14	crybgx (ENSSFOG00015008536)	smad6a (ENSSFOG00015029740) #15	smad3b (ENSSFOG00015008603) #18	aagab (ENSSFOG00015008638) #19	zgc:162898 (ENSSFOG00015008646) #21	map2k5 (ENSSFOG00015008680) #22	ENSSFOG00015028767	skor1a (ENSSFOG00015008718) #24	PIAS1 (ENSSFOG00015008750) #25	ENSSFOG00015027278	morf4l1 (ENSSFOG00015008833)	UACA (ENSSFOG00015008887)	tle3a (ENSSFOG00015008917)	kif23 (ENSSFOG00015009021) #37	paqr5a (ENSSFOG00015009123) #36	glceb (ENSSFOG00015009150) #35	NOX5 (ENSSFOG00015009192) #34	anp32a (ENSSFOG00015032753) #31	CORO2B (ENSSFOG00015009298) #30	itga11a (ENSSFOG00015009348) #29	ENSSFOG00015009558
P. kingsleyae	MODERN SPECIES	146	ENSPKIG00000014991	EIF3J (ENSPKIG00000015047)	RAB11A (ENSPKIG00000015102)	ENSPKIG00000015215	ENSPKIG00000015455	dis3l (ENSPKIG00000015490)	ENSPKIG00000015547	tipin (ENSPKIG00000015565) #7	map2k1 (ENSPKIG00000015608) #9	rpl4 (ENSPKIG00000015644) #12	lctla (ENSPKIG00000015716) #14	smad6a (ENSPKIG00000015767) #15	smad3b (ENSPKIG00000015799) #18	aagab (ENSPKIG00000015838) #19	zgc:162898 (ENSPKIG00000015892) #21	map2k5 (ENSPKIG00000015970) #22	ENSPKIG00000016124	skor1a (ENSPKIG00000016152) #24	PIAS1 (ENSPKIG00000016189) #25	morf4l1 (ENSPKIG00000016253)	UACA (ENSPKIG00000016315)	tle3a (ENSPKIG00000016380)	ENSPKIG00000016421	kif23 (ENSPKIG00000016508) #37	paqr5a (ENSPKIG00000016740) #36	glceb (ENSPKIG00000016806) #35	NOX5 (ENSPKIG00000016853) #34	anp32a (ENSPKIG00000016897) #31	CORO2B (ENSPKIG00000016948) #30	itga11a (ENSPKIG00000017016) #29	ENSPKIG00000017070
Clupeocephala	ANCESTRAL SPECIES	2	ENSGT01030000234532.B.e.b.f	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b	ENSGT00940000159258.d	ENSGT00980000198641	ENSGT00940000155333.A.a	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000157369.b #14	ENSGT00940000165890	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.b #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00940000158440.h #24	ENSGT01030000234539.a.a.b.a.b.a.b #25	ENSGT00950000182965.a.b.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837 #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35
Otomorpha	ANCESTRAL SPECIES	327					ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000157369.b #14	ENSGT00940000165890	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.b #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT01030000234518.B.a.b.a.b.i	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j	ENSGT00940000155837 #37	ENSGT00940000158844 #36	ENSGT00390000006043.o #35
Otophysi	ANCESTRAL SPECIES	150					ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000157369.b #14	ENSGT00940000165890	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.b.j #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k #36	ENSGT00390000006043.o #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00730000111210	ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a	ENSGT00940000159515.c.b
Characiphysae	ANCESTRAL SPECIES	27	ENSGT00940000180790	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B	ENSGT00390000005764.`b #7	ENSGT00940000157369.b #14	ENSGT00940000165890	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.b.j #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k #36	ENSGT00390000006043.o #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00730000111210	ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a	ENSGT00940000159515.c.b
Characiphysae_b	ANCESTRAL SPECIES	28	ENSGT00940000180790	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B	ENSGT00390000005764.`b #7	ENSGT00940000157369.b #14	ENSGT00940000165890	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.b.j #18	ENSGT00940000157505 #22	ENSGT00940000158440.h #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k #36	ENSGT00390000006043.o #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00730000111210	ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a	ENSGT00940000159515.c.b
Characoidei	ANCESTRAL SPECIES	24	ENSGT00940000180790	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B	ENSGT00390000005764.`b #7	ENSGT00940000157369.b #14	ENSGT00940000165890	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.b.j #18	ENSGT00940000157505 #22	ENSGT00940000158440.h #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k #36	ENSGT00390000006043.o #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00730000111210	ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a	ENSGT00940000158805.a	ENSGT00940000159515.c.b
Red-bellied piranha	MODERN SPECIES	92				ZNF536 (ENSPNAG00000014223)	nr1h3 (ENSPNAG00000014241)	MADD (ENSPNAG00000014316)	bbox1 (ENSPNAG00000014337)	fibinb (ENSPNAG00000014347)	ENSPNAG00000014354	dis3l (ENSPNAG00000014400)	tipin (ENSPNAG00000014414) #7	lctla (ENSPNAG00000003140) #14	crybgx (ENSPNAG00000014505)	smad6a (ENSPNAG00000014514) #15	smad3a (ENSPNAG00000014544) #18	map2k5 (ENSPNAG00000014566) #22	ENSPNAG00000014587 #24	PIAS1 (ENSPNAG00000003192) #25	ENSPNAG00000014629	UACA (ENSPNAG00000003210)	tle3b (ENSPNAG00000014802)	paqr5b (ENSPNAG00000003288) #36	glceb (ENSPNAG00000003298) #35	anp32a (ENSPNAG00000014867) #31	CORO2B (ENSPNAG00000014897) #30	itga11a (ENSPNAG00000003319) #29	mns1 (ENSPNAG00000003324)	tph1b (ENSPNAG00000014954)	kcnc1a (ENSPNAG00000014969)	cd81a (ENSPNAG00000015010)	PKP3 (ENSPNAG00000015030)
Mexicana tetra	MODERN SPECIES	47	tshz3b (ENSAMXG00000006284)	ZNF536 (ENSAMXG00000006281)	ENSAMXG00000033278	nr1h3 (ENSAMXG00000006277)	MADD (ENSAMXG00000006269)	bbox1 (ENSAMXG00000006257)	fibinb (ENSAMXG00000025955)	ENSAMXG00000006252	dis3l (ENSAMXG00000006220)	tipin (ENSAMXG00000035999) #7	lctla (ENSAMXG00000006194) #14	crybgx (ENSAMXG00000006190)	ENSAMXG00000029211	smad6a (ENSAMXG00000006188) #15	smad3a (ENSAMXG00000006181) #18	map2k5 (ENSAMXG00000006170) #22	ENSAMXG00000006162 #24	PIAS1 (ENSAMXG00000006151) #25	ENSAMXG00000025954	UACA (ENSAMXG00000006145)
Electric eel	MODERN SPECIES	82	MADD (ENSEEEG00000020444)	nr1h3 (ENSEEEG00000020215)	ZNF536 (ENSEEEG00000020210)	tshz3b (ENSEEEG00000020209)	ZNF507 (ENSEEEG00000020208)	DPY19L3 (ENSEEEG00000020207)	ENSEEEG00000020206	ENSEEEG00000020205	cpeb1b (ENSEEEG00000020204)	rbpms2b (ENSEEEG00000020201)	tipin (ENSEEEG00000020200) #7	lctla (ENSEEEG00000020199) #14	ENSEEEG00000020190	smad6a (ENSEEEG00000020182) #15	smad3a (ENSEEEG00000020177) #18	map2k5 (ENSEEEG00000020174) #22	skor1a (ENSEEEG00000020172) #24	PIAS1 (ENSEEEG00000020167) #25	ENSEEEG00000020166	UACA (ENSEEEG00000020165)
Channel catfish	MODERN SPECIES	19	ZNF507 (ENSIPUG00000020853)	TSHZ3 (ENSIPUG00000020845)	znf536 (ENSIPUG00000020834)	nr1h3 (ENSIPUG00000019883)	ENSIPUG00000019875	madd (ENSIPUG00000019744)	Bbox1 (ENSIPUG00000019724)	fibin (ENSIPUG00000019720)	muc15 (ENSIPUG00000019713)	dis3l (ENSIPUG00000019669)	tipin (ENSIPUG00000019666) #7	crybgx (ENSIPUG00000019649)	LCTL (ENSIPUG00000019586) #14	smad6a (ENSIPUG00000019564) #15	SMAD3 (ENSIPUG00000019525) #18	map2k5 (ENSIPUG00000019485) #22	skor1a (ENSIPUG00000019469) #24	PIAS1 (ENSIPUG00000019429) #25	ENSIPUG00000019422	uaca (ENSIPUG00000019360)	tle3b (ENSIPUG00000019127)	paqr5b (ENSIPUG00000019056) #36	Glce (ENSIPUG00000019029) #35	anp32a (ENSIPUG00000019014) #31	coro2b (ENSIPUG00000018930) #30	itga11 (ENSIPUG00000018854) #29	mns1 (ENSIPUG00000018825)	tph1b (ENSIPUG00000018783)	Kcnc1 (ENSIPUG00000018769)	cd81a (ENSIPUG00000018729)	PKP3 (ENSIPUG00000018677)
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000157505.c #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000157505.c #22
Cyprininae_a	ANCESTRAL SPECIES	77	ENSGT01050000244970.b.j.a.b	ENSGT00390000018333.g	ENSGT00940000157859.a.a.a #26	ENSGT00400000022240.lc.a.b #27	ENSGT00940000159068.c	ENSGT00940000156718.f	ENSGT00530000063582.b.l	ENSGT00390000007623.c.f	ENSGT01030000235035.b	ENSGT00530000063106.B.c	ENSGT00390000005764.z #7	ENSGT00940000157369.b.b #14	ENSGT00940000165890.h	ENSGT00940000158146.a.a #15	ENSGT00940000153499.b.b.d.a.b.j.b #18	ENSGT00940000157505.c #22	ENSGT00940000158440.g.a.b #24	ENSGT01030000234539.a.a.b.a.b.a.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a.d	ENSGT01030000234519.e.b.j.b.b.a	ENSGT00940000158844.k.a #36	ENSGT00390000006043.o.a #35	ENSGT00950000182907.a.b.b.b.l #31	ENSGT00940000158689.eb.b #30	ENSGT00940000155465.i.a #29	ENSGT00730000111210.e.a.a.a	ENSGT00940000154757.tb.a	ENSGT00940000163443.m.a.a.b	ENSGT00730000111210.e.a.b	ENSGT00950000182885.A.a.e.b
Golden-line barbel	MODERN SPECIES	874	RFX7 (ENSSGRG00000012361)	tex9 (ENSSGRG00000012360)	calml4a (ENSSGRG00000012358) #26	cln6a (ENSSGRG00000012357) #27	nr1h3 (ENSSGRG00000012280)	MADD (ENSSGRG00000004025)	bbox1 (ENSSGRG00000003510)	fibinb (ENSSGRG00000003506)	ENSSGRG00000003501	tipin (ENSSGRG00000003488) #7	dis3l (ENSSGRG00000003440)	lctla (ENSSGRG00000002952) #14	crybgx (ENSSGRG00000002921)	smad6a (ENSSGRG00000002916) #15	smad3a (ENSSGRG00000001460) #18	MAP2K5 (ENSSGRG00000001326) #22	skor1a (ENSSGRG00000001317) #24	PIAS1 (ENSSGRG00000001304) #25	ENSSGRG00000001293	UACA (ENSSGRG00000001249)
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000160212	ENSGT01050000244970.b.j.a	ENSGT00390000018333	ENSGT00940000157859.a.a #26	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000157369.b #14	ENSGT00940000165890	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.b.j #18	ENSGT00940000157505.d #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.j.b.b	ENSGT00940000158844.k #36	ENSGT00390000006043.o #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00940000154757	ENSGT00940000163443.m.a	ENSGT00730000111210	ENSGT00950000182885.A.a.e	ENSGT00940000156912.c.a
Zebrafish	MODERN SPECIES	22	cln6a (ENSDARG00000077584) #27	ENSDARG00000077910	ENSDARG00000105574	nr1h3 (ENSDARG00000098439)	MADD (ENSDARG00000003495)	bbox1 (ENSDARG00000036135)	ENSDARG00000111781	fibinb (ENSDARG00000087196)	ENSDARG00000105641	dis3l (ENSDARG00000053200)	tipin (ENSDARG00000036136) #7	lctla (ENSDARG00000036139) #14	crybgx (ENSDARG00000036140)	smad6a (ENSDARG00000053209) #15	smad3a (ENSDARG00000036096) #18	map2k5 (ENSDARG00000011851) #22	skor1a (ENSDARG00000069030) #24	PIAS1 (ENSDARG00000036094) #25	ENSDARG00000069028	UACA (ENSDARG00000060238)	tle3b (ENSDARG00000069006)	paqr5b (ENSDARG00000052688) #36	glceb (ENSDARG00000068981) #35	anp32a (ENSDARG00000006487) #31	CORO2B (ENSDARG00000079440) #30	itga11a (ENSDARG00000036086) #29	ITLN1 (ENSDARG00000095082)	ENSDARG00000105568	itln2 (ENSDARG00000036084)	ENSDARG00000093796	ENSDARG00000105598
Cyprininae	ANCESTRAL SPECIES	26	ENSGT01030000235035.b	ENSGT00530000063106.B.c	ENSGT00390000005764.z #7	ENSGT00940000157369.b.b #14	ENSGT00940000165890.h	ENSGT00940000158146.a.a #15	ENSGT00940000153499.b.b.d.a.b.j.b #18	ENSGT00530000063582.b.k	ENSGT00390000007623.c.e	ENSGT01030000235035.a	ENSGT00530000063106.B.d	ENSGT00940000157369.b.a #14	ENSGT00940000165890.g	ENSGT00940000158146.a.b #15	ENSGT00940000153499.b.b.d.a.b.j.a #18	ENSGT00940000157505.d #22	ENSGT00940000158440.g.a.a #24	ENSGT01030000234539.a.a.b.a.b.a.a.b #25	ENSGT01030000234518.B.a.b.a.b.i	ENSGT00940000157475.s.a.c	ENSGT01030000234519.e.b.j.b.b.b	ENSGT00940000158844.k.b #36	ENSGT00390000006043.o.b #35	ENSGT00940000158440.g.a.b #24	ENSGT01030000234539.a.a.b.a.b.a.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00940000157475.s.a.d	ENSGT01030000234519.e.b.j.b.b.a	ENSGT00940000158844.k.a #36	ENSGT00390000006043.o.a #35	ENSGT00950000182907.a.b.b.b #31
Goldfish	MODERN SPECIES	3320															smad3a (ENSCARG00000051116) #18	map2k5 (ENSCARG00000050958) #22	skor1a (ENSCARG00000050923) #24
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00390000018333.h	ENSGT00940000157859.a.a.b #26	ENSGT00400000022240.lc.b #27	ENSGT00400000022240.lc.a.a.a #27	ENSGT00940000159068.d	ENSGT00940000156718.e	ENSGT00530000063582.b.k	ENSGT00390000007623.c.e	ENSGT01030000235035.a	ENSGT00390000005764.y.a #7	ENSGT00530000063106.B.d	ENSGT00940000157369.b.a #14	ENSGT00940000165890.g	ENSGT00940000158146.a.b #15	ENSGT00940000153499.b.b.d.a.b.j.a #18	ENSGT00940000157505.d #22	ENSGT00940000158440.g.a.a #24	ENSGT01030000234539.a.a.b.a.b.a.a.b #25	ENSGT01030000234518.B.a.b.a.b.i	ENSGT00940000157475.s.a.c	ENSGT01030000234519.e.b.j.b.b.b	ENSGT00940000158844.k.b #36	ENSGT00390000006043.o.b #35	ENSGT00950000182907.a.b.b.b.k #31	ENSGT00940000158689.eb.a #30	ENSGT00940000155465.i.b #29	ENSGT00940000163443.m.a.a.a	ENSGT00730000111210.e.b	ENSGT00950000182885.A.a.e.a	ENSGT00940000156912.c.a.f	ENSGT00940000158805.a.c.b
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	6	ENSCCRG00000053616	ENSCCRG00000079445	tex9 (ENSCCRG00000038240)	cln6a (ENSCCRG00000038243) #27	nr1h3 (ENSCCRG00000038214)	ENSCCRG00000017716	bbox1 (ENSCCRG00000019296)	fibinb (ENSCCRG00000060452)	ENSCCRG00000082862	tipin (ENSCCRG00000019302) #7	crybgx (ENSCCRG00000051990)	lctla (ENSCCRG00000050348) #14	smad6a (ENSCCRG00000051993) #15	ENSCCRG00000074909	smad3a (ENSCCRG00000064022) #18	map2k5 (ENSCCRG00000079416) #22	skor1a (ENSCCRG00000016747) #24	PIAS1 (ENSCCRG00000074323) #25	ENSCCRG00000012448	ENSCCRG00000013336	tle3b (ENSCCRG00000013442)	paqr5b (ENSCCRG00000015743) #36	glceb (ENSCCRG00000039429) #35	anp32a (ENSCCRG00000057989) #31	CORO2B (ENSCCRG00000035947) #30	itga11a (ENSCCRG00000042314) #29	ENSCCRG00000032576	mns1 (ENSCCRG00000043422)	tph1b (ENSCCRG00000073694)	kcnc1a (ENSCCRG00000062348)	cd81a (ENSCCRG00000053775)
Common carp reference	MODERN SPECIES		ENSCCRG00000019313	ENSCCRG00000073027	tex9 (ENSCCRG00000019270)	cln6a (ENSCCRG00000019275) #27	nr1h3 (ENSCCRG00000038257)	ENSCCRG00000038221	bbox1 (ENSCCRG00000051928)	fibinb (ENSCCRG00000076312)	ENSCCRG00000051933	dis3l (ENSCCRG00000051944)	tipin (ENSCCRG00000051973) #7	lctla (ENSCCRG00000051980) #14	crybgx (ENSCCRG00000001610)	smad6a (ENSCCRG00000031892) #15	smad3a (ENSCCRG00000075589) #18	map2k5 (ENSCCRG00000000607) #22	skor1a (ENSCCRG00000000576) #24	PIAS1 (ENSCCRG00000070797) #25	ENSCCRG00000062231	ENSCCRG00000013370	tle3b (ENSCCRG00000030981)	paqr5b (ENSCCRG00000071186) #36	glceb (ENSCCRG00000046460) #35	anp32a (ENSCCRG00000070700) #31	CORO2B (ENSCCRG00000079311) #30	itga11a (ENSCCRG00000042656) #29	ENSCCRG00000060873	ENSCCRG00000065226	ENSCCRG00000042251	ENSCCRG00000019224	mns1 (ENSCCRG00000019207)
Golden-line barbel	MODERN SPECIES	463	FHOD1 (ENSSGRG00000041694)	RFX7 (ENSSGRG00000041690)	tex9 (ENSSGRG00000041689)	calml4a (ENSSGRG00000041686) #26	cln6a (ENSSGRG00000041678) #27	nr1h3 (ENSSGRG00000041581)	MADD (ENSSGRG00000036092)	bbox1 (ENSSGRG00000035980)	fibinb (ENSSGRG00000035979)	ENSSGRG00000035978	dis3l (ENSSGRG00000035956)	lctla (ENSSGRG00000035931) #14	crybgx (ENSSGRG00000035930)	smad6a (ENSSGRG00000035929) #15	smad3a (ENSSGRG00000035769) #18	map2k5 (ENSSGRG00000035763) #22	skor1a (ENSSGRG00000035761) #24	PIAS1 (ENSSGRG00000035745) #25	ENSSGRG00000035743	UACA (ENSSGRG00000035741)	tle3b (ENSSGRG00000035215)	paqr5b (ENSSGRG00000035203) #36	glceb (ENSSGRG00000035201) #35	anp32a (ENSSGRG00000035200) #31	CORO2B (ENSSGRG00000035199) #30	itga11a (ENSSGRG00000035197) #29	ENSSGRG00000035195	mns1 (ENSSGRG00000035193)	tph1b (ENSSGRG00000035188)	kcnc1a (ENSSGRG00000035187)	cd81a (ENSSGRG00000035186)
Clupeiformes	ANCESTRAL SPECIES	38	ENSGT00940000155328	ENSGT00390000005270	ENSGT00940000159421	ENSGT00390000005939.b	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B	ENSGT00390000005764 #7	ENSGT00940000157369.b #14	ENSGT00940000165890	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.b #25	ENSGT01030000234534.B.a.b.a.b	ENSGT01030000234518.B.a.b.a.b.i	ENSGT00940000157475.s.a	ENSGT01030000234519.e.b.i.b	ENSGT00940000158844 #36	ENSGT00390000006043.o #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00530000063760.a	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109
Denticle herring	MODERN SPECIES	7	rras2 (ENSDCDG00000035046)	copb1 (ENSDCDG00000035049)	ZNF821 (ENSDCDG00000035051)	ATXN1L (ENSDCDG00000035052)	nr1h3 (ENSDCDG00000035058)	MADD (ENSDCDG00000035262)	bbox1 (ENSDCDG00000035684)	fibinb (ENSDCDG00000035687)	ENSDCDG00000035691	dis3l (ENSDCDG00000035696)	tipin (ENSDCDG00000022673) #7	lctla (ENSDCDG00000022677) #14	crybgx (ENSDCDG00000022683)	smad6a (ENSDCDG00000022684) #15	SMAD3 (ENSDCDG00000022693) #18	map2k5 (ENSDCDG00000022906) #22	skor1a (ENSDCDG00000023245) #24	PIAS1 (ENSDCDG00000023259) #25	ENSDCDG00000023290	UACA (ENSDCDG00000023294)	tle3a (ENSDCDG00000023378)	paqr5b (ENSDCDG00000025967) #36	glceb (ENSDCDG00000025970) #35	CORO2B (ENSDCDG00000026021) #30	itga11a (ENSDCDG00000027395) #29	ENSDCDG00000027515	PCSK6 (ENSDCDG00000027564)	snrpa1 (ENSDCDG00000029782)	selenos (ENSDCDG00000029783)	chsy1 (ENSDCDG00000029786)	ENSDCDG00000029805
Atlantic herring	MODERN SPECIES	22	psmd7 (ENSCHAG00000020169)	LRRK1 (ENSCHAG00000020219)	aldh1a3 (ENSCHAG00000020992)	snrpa1 (ENSCHAG00000021391)	PCSK6 (ENSCHAG00000021433)	ENSCHAG00000022701	itga11a (ENSCHAG00000022724) #29	CORO2B (ENSCHAG00000022923) #30	anp32a (ENSCHAG00000023079) #31	glceb (ENSCHAG00000023095) #35	paqr5a (ENSCHAG00000023114) #36	TLE3 (ENSCHAG00000023284)	UACA (ENSCHAG00000024120)	ENSCHAG00000024151	PIAS1 (ENSCHAG00000024164) #25	map2k5 (ENSCHAG00000024351) #22	SMAD3 (ENSCHAG00000024368) #18	smad6a (ENSCHAG00000024456) #15	crybgx (ENSCHAG00000024459)	lctla (ENSCHAG00000024470) #14	tipin (ENSCHAG00000024505) #7	dis3l (ENSCHAG00000024525)	ENSCHAG00000024549	fibinb (ENSCHAG00000024552)	bbox1 (ENSCHAG00000024557)	MADD (ENSCHAG00000024588)	nr1h3 (ENSCHAG00000024937)	ATXN1L (ENSCHAG00000024986)	ZNF821 (ENSCHAG00000024989)	copb1 (ENSCHAG00000024999)	rras2 (ENSCHAG00000025016)
Euteleosteomorpha	ANCESTRAL SPECIES	194														ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT01030000234539.a.a.b.a.b.a.b #25	ENSGT00950000182965.a.b.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837.o #37	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a
Protacanthopterygii	ANCESTRAL SPECIES	152														ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT01030000234539.a.a.b.a.b.a.b #25	ENSGT00950000182965.a.b.a.a	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000165054.A.c	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00400000022240 #27
Northern pike	MODERN SPECIES	1	traf6 (ENSELUG00000020636)	ENSELUG00000020662	ENSELUG00000030198	ttc17 (ENSELUG00000020818)	ENSELUG00000020845	ENSELUG00000020858	LRRC4C (ENSELUG00000031309)	apip (ENSELUG00000020924)	slc1a2a (ENSELUG00000000921)	PAMR1 (ENSELUG00000020976)	CRY2 (ENSELUG00000021019)	slc35c1 (ENSELUG00000021039)	CHST1 (ENSELUG00000021051)	smad6a (ENSELUG00000021062) #15	SMAD3 (ENSELUG00000021087) #18	map2k5 (ENSELUG00000021260) #22	skor1a (ENSELUG00000021269) #24	PIAS1 (ENSELUG00000021305) #25	ENSELUG00000022543	ENSELUG00000021372	UACA (ENSELUG00000021409)	tle3a (ENSELUG00000021491)	ENSELUG00000021509	kif23 (ENSELUG00000021675) #37	paqr5b (ENSELUG00000021700) #36	ENSELUG00000021715	rbpms2b (ENSELUG00000021784)	cpeb1b (ENSELUG00000021835)	ENSELUG00000021867	csnk1g1 (ENSELUG00000021940)	SNX1 (ENSELUG00000021970)
Salmoninae	ANCESTRAL SPECIES	1	ENSGT00940000166194.a.b	ENSGT00390000006196.k.b	ENSGT00390000006196.l	ENSGT00940000154860.a.a.d	ENSGT00940000157405.c.b	ENSGT00390000001680	ENSGT00940000155379.g.a	ENSGT00940000154234.a.d	ENSGT00940000157089.A.a	ENSGT00940000159073	ENSGT00390000013315	ENSGT00940000161262.a.n	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.b.h.a #18	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a.k.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.a	ENSGT00950000182965.a.b.b.b	ENSGT00940000157475	ENSGT01030000234519.e.b.m.a	ENSGT00940000165054.A.c	ENSGT00940000155837.p.d #37	ENSGT00940000155837.p.c.a #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29
Huchen	MODERN SPECIES	3556																ENSHHUG00000037918 #22	skor1a (ENSHHUG00000037935) #24	ENSHHUG00000037972 #25
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000160121.c	ENSGT00940000157633	ENSGT00940000153272.a.b.c.j	ENSGT00390000015016.c	ENSGT00940000155352.eb.a.b	ENSGT00940000158980.tb	ENSGT00940000154963.h	ENSGT00390000014757.w.a	ENSGT00940000161814.g.b.g.d.b.a	ENSGT00940000157089.A.a	ENSGT00940000159073	ENSGT00390000013315	ENSGT00940000161262.a.n	ENSGT00940000158146.a.c.b #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a.k.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.a.h	ENSGT00950000182965.a.b.a.a.g	ENSGT00940000157475	ENSGT01030000234519.e.b.m.a	ENSGT00940000165054.A.c	ENSGT00940000155837.p.d #37	ENSGT00940000155837.p.c.a #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000162677.qc.b	ENSGT00940000160588.b	ENSGT00940000155426	ENSGT00940000166194.a.a	ENSGT00390000006196.l	ENSGT00940000154860.a.a.d	ENSGT00990000209089.b	ENSGT00940000157405.c.b	ENSGT00390000001680	ENSGT00940000155379.g.a	ENSGT00940000154234.a.d	ENSGT00390000013315	ENSGT00940000161262.a.n	ENSGT00940000158146.a.c.b #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a.g.b #24	ENSGT00950000182965.a.b.b.b	ENSGT00940000157475	ENSGT01030000234519.e.b.m.a.d	ENSGT00940000155837.p.d #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00940000154725.j.e.a	ENSGT00940000157859.a.a.d #26	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819.p.a	ENSGT00940000154617.B.c.d
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	27	trpm5 (ENSOMYG00000057858)	ENSOMYG00000040541	ENSOMYG00000065809	ttc17 (ENSOMYG00000066781)	hsd17b12b (ENSOMYG00000054352)	ENSOMYG00000002918	ENSOMYG00000030570	ENSOMYG00000061757	apip (ENSOMYG00000071183)	slc1a2a (ENSOMYG00000002858)	ENSOMYG00000069110	ENSOMYG00000002832	ENSOMYG00000068058	smad6a (ENSOMYG00000074703) #15	ENSOMYG00000002807 #18	map2k5 (ENSOMYG00000064462) #22	skor1a (ENSOMYG00000057349) #24	ENSOMYG00000077338	PIAS1 (ENSOMYG00000070434) #25	ENSOMYG00000002685	morf4l1 (ENSOMYG00000002673)	ENSOMYG00000070845	ENSOMYG00000002551	TLE3 (ENSOMYG00000051984)	ENSOMYG00000054756	KIF23 (ENSOMYG00000002448) #37	PAQR5 (ENSOMYG00000002128) #36	glceb (ENSOMYG00000021963) #35	ENSOMYG00000073466	anp32a (ENSOMYG00000039157) #31	CORO2B (ENSOMYG00000021985) #30
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000055804	ENSOMYG00000040584	ENSOMYG00000040503	ttc17 (ENSOMYG00000040239)	hsd17b12b (ENSOMYG00000065304)	ENSOMYG00000040103	ENSOMYG00000055763	apip (ENSOMYG00000072316)	slc1a2a (ENSOMYG00000051777)	ENSOMYG00000024704	ENSOMYG00000057959	ENSOMYG00000056192	ENSOMYG00000064779	smad6a (ENSOMYG00000050910) #15	smad3 (ENSOMYG00000064926) #18	map2k5 (ENSOMYG00000065445) #22	skor1a (ENSOMYG00000040079) #24	ENSOMYG00000076342	PIAS1 (ENSOMYG00000049756) #25	ENSOMYG00000064318	mo4l1 (ENSOMYG00000049978)	UACA (ENSOMYG00000057286)	TLE3 (ENSOMYG00000048144)	ENSOMYG00000069520	kif23 (ENSOMYG00000039505) #37	PAQR5 (ENSOMYG00000034607) #36	glceb (ENSOMYG00000034637) #35	anp32a (ENSOMYG00000037247) #31	CORO2B (ENSOMYG00000075332) #30	ENSOMYG00000058683	itga11a (ENSOMYG00000068392) #29
Oncorhynchus_a	ANCESTRAL SPECIES	111														ENSGT00940000158146.a.c.b #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a.g.a #24	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.a.h	ENSGT00940000157475	ENSGT01030000234519.e.b.m.a.c	ENSGT00940000165054.A.c	ENSGT00940000155837.p.d #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT00940000154725.j.e.a	ENSGT00940000157859.a.a.d #26	ENSGT01030000234518.B.a.b.a.a
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	32	trpm5 (ENSOKIG00005033333)	ENSOKIG00005033243	ENSOKIG00005033109	lingo1b (ENSOKIG00005033071)	ENSOKIG00005031839	CHST1 (ENSOKIG00005031722)	slc35c1 (ENSOKIG00005031717)	PAMR1 (ENSOKIG00005031706)	slc1a2a (ENSOKIG00005031245)	apip (ENSOKIG00005031096)	LRRC4C (ENSOKIG00005031076)	ENSOKIG00005031071	smad6a (ENSOKIG00005031063) #15	ENSOKIG00005031026	SMAD3 (ENSOKIG00005030867) #18	MAP2K5 (ENSOKIG00005030818) #22	skor1a (ENSOKIG00005030605) #24	ENSOKIG00005030513	morf4l1 (ENSOKIG00005030482)	UACA (ENSOKIG00005030214)	ENSOKIG00005030169	ENSOKIG00005030159	ENSOKIG00005030149	TLE3 (ENSOKIG00005027326)	ENSOKIG00005027053	kif23 (ENSOKIG00005024942) #37	paqr5a (ENSOKIG00005024740) #36	glceb (ENSOKIG00005024694) #35	anp32a (ENSOKIG00005024657) #31	CORO2B (ENSOKIG00005023743) #30	itga11a (ENSOKIG00005023531) #29
Coho salmon	MODERN SPECIES	407																MAP2K5 (ENSOKIG00005046977) #22
Chinook salmon	MODERN SPECIES	1085																ENSOTSG00005015915 #22
Salmo	ANCESTRAL SPECIES	45	ENSGT00940000157633	ENSGT00390000015016.c	ENSGT00940000155352.eb.a.b	ENSGT00940000158980.tb	ENSGT00940000154963.h	ENSGT00390000014757.w.a	ENSGT00940000161814.g.b.g.d.b.a	ENSGT00940000157089.A.a	ENSGT00940000159073	ENSGT00390000013315	ENSGT00940000161262.a.n.e	ENSGT00940000158146.a.c.a.b #15	ENSGT00940000153499.b.b.d.a.a.d #18	ENSGT00940000158146.a.c.b #15	ENSGT00940000153499.b.b.d.a.a.c #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a.e.a #24	ENSGT01030000234539.a.a.b.a.b.a.a.k.a.b #25	ENSGT01030000234518.B.a.b.a.b.d	ENSGT00950000182965.a.b.a.a.h
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000045767	ENSSSAG00000057376	chst1 (ENSSSAG00000095739)	ENSSSAG00000004788	ENSSSAG00000109804	ENSSSAG00000020893	ENSSSAG00000019260	ENSSSAG00000113219	ENSSSAG00000086111	ENSSSAG00000106407	ENSSSAG00000116546	ENSSSAG00000097937	ENSSSAG00000024743	smad6a (ENSSSAG00000103532) #15	ENSSSAG00000005798 #18	map2k5 (ENSSSAG00000088189) #22	ENSSSAG00000118360	skor1a (ENSSSAG00000010641) #24	PIAS1 (ENSSSAG00000101551) #25	ENSSSAG00000091284	morf4l1 (ENSSSAG00000005810)	ENSSSAG00000040259	ENSSSAG00000097865	TLE3 (ENSSSAG00000074519)	ENSSSAG00000113764	KIF23 (ENSSSAG00000120697) #37	PAQR5 (ENSSSAG00000113393) #36	glceb (ENSSSAG00000111912) #35	anp32a (ENSSSAG00000043489) #31	CORO2B (ENSSSAG00000065753) #30	itga11a (ENSSSAG00000102694) #29
Atlantic salmon	MODERN SPECIES	18	ttc17 (ENSSSAG00000040540)	hsd17b12b (ENSSSAG00000040461)	ENSSSAG00000040431	ENSSSAG00000091855	apip (ENSSSAG00000042232)	slc1a2a (ENSSSAG00000009050)	ENSSSAG00000062807	CRY2 (ENSSSAG00000069768)	ENSSSAG00000112050	ENSSSAG00000114794	ENSSSAG00000120164	ENSSSAG00000085173	chst1 (ENSSSAG00000004800)	smad6a (ENSSSAG00000088892) #15	ENSSSAG00000121852 #18	map2k5 (ENSSSAG00000089565) #22	skor1a (ENSSSAG00000065500) #24	PIAS1 (ENSSSAG00000085914) #25	ENSSSAG00000040397	mo4l1 (ENSSSAG00000081184)	ENSSSAG00000096373	ENSSSAG00000113826	TLE3 (ENSSSAG00000084287)	ENSSSAG00000076630	KIF23 (ENSSSAG00000095510) #37	PAQR5 (ENSSSAG00000055316) #36	glceb (ENSSSAG00000111347) #35	anp32a (ENSSSAG00000113550) #31	CORO2B (ENSSSAG00000120941) #30	itga11a (ENSSSAG00000082935) #29	ENSSSAG00000085685
River trout	DUPLICATION
River trout	MODERN SPECIES	21	hsd17b12b (ENSSTUG00000013517)	ENSSTUG00000013536	ENSSTUG00000013540	LRRC4C (ENSSTUG00000013543)	apip (ENSSTUG00000013552)	slc1a2a (ENSSTUG00000013581)	PAMR1 (ENSSTUG00000013601)	CRY2 (ENSSTUG00000013635)	slc35c1 (ENSSTUG00000013839)	CHST1 (ENSSTUG00000013841)	ENSSTUG00000013845	ENSSTUG00000013853	ENSSTUG00000013858	smad6a (ENSSTUG00000013876) #15	SMAD3 (ENSSTUG00000013882) #18	map2k5 (ENSSTUG00000013921) #22	skor1a (ENSSTUG00000013956) #24	TLE3 (ENSSTUG00000014027)	ENSSTUG00000016054	kif23 (ENSSTUG00000016129) #37	PAQR5 (ENSSTUG00000018329) #36	glceb (ENSSTUG00000018363) #35	ENSSTUG00000018392	anp32a (ENSSTUG00000018395) #31	CORO2B (ENSSTUG00000018417) #30	itga11a (ENSSTUG00000018657) #29	ENSSTUG00000018937	ENSSTUG00000018943 #27	calml4a (ENSSTUG00000018951) #26	ENSSTUG00000018967	ADAMTS7 (ENSSTUG00000019032)
River trout	MODERN SPECIES	209																MAP2K5 (ENSSTUG00000029973) #22	ENSSTUG00000030019	skor1a (ENSSTUG00000030043) #24	ENSSTUG00000030087	ENSSTUG00000030100 #25	ENSSTUG00000030116 #18	smad6a (ENSSTUG00000030138) #15
Acanthomorphata	ANCESTRAL SPECIES	79													ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Cod	MODERN SPECIES	5	ENSGMOG00000033955	ENSGMOG00000017408	ENSGMOG00000017430	CTSH (ENSGMOG00000017462)	ENSGMOG00000017486	ENSGMOG00000017523	ENSGMOG00000017537	ENSGMOG00000034247	ENSGMOG00000017568	ENSGMOG00000001528	ENSGMOG00000001246	ENSGMOG00000001268	ENSGMOG00000001293	smad6a (ENSGMOG00000032620) #15	ENSGMOG00000008364 #18	map2k5 (ENSGMOG00000001328) #22	skor1a (ENSGMOG00000035936) #24	PIAS1 (ENSGMOG00000001390) #25	ENSGMOG00000001426	ENSGMOG00000001435	UACA (ENSGMOG00000001457)	tle3a (ENSGMOG00000001493)	ENSGMOG00000031541	KIF23 (ENSGMOG00000015631) #37	paqr5a (ENSGMOG00000015675) #36	glceb (ENSGMOG00000015696) #35	ENSGMOG00000015718	CORO2B (ENSGMOG00000015733) #30	itga11a (ENSGMOG00000015758) #29	ENSGMOG00000020315	ENSGMOG00000015813
Euacanthomorphacea	ANCESTRAL SPECIES	46													ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Pinecone sodierfish	MODERN SPECIES	17	hrh3 (ENSMMDG00005011947)	vps35 (ENSMMDG00005012005)	orc6 (ENSMMDG00005012351)	mylk3 (ENSMMDG00005012352)	zgc:92818 (ENSMMDG00005012354)	lrp3 (ENSMMDG00005012355)	slc7a10a (ENSMMDG00005012358)	rhpn2 (ENSMMDG00005012374)	cep89 (ENSMMDG00005013375)	zgc:165481 (ENSMMDG00005013378)	ABCC12 (ENSMMDG00005013387)	tmem208 (ENSMMDG00005013549)	smad6a (ENSMMDG00005013552) #15	ENSMMDG00005013629	SMAD3 (ENSMMDG00005013632) #18	map2k5 (ENSMMDG00005013634) #22	skor1a (ENSMMDG00005013640) #24	PIAS1 (ENSMMDG00005013642) #25	ENSMMDG00005013674	ENSMMDG00005013682	UACA (ENSMMDG00005014056)	TLE3 (ENSMMDG00005014073)	kif23 (ENSMMDG00005017427) #37	paqr5a (ENSMMDG00005017824) #36	glceb (ENSMMDG00005018113) #35	anp32a (ENSMMDG00005018115) #31	CORO2B (ENSMMDG00005018117) #30	itga11a (ENSMMDG00005018120) #29	ENSMMDG00005018123	ADAMTS7 (ENSMMDG00005018126)	calml4a (ENSMMDG00005018129) #26
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Tiger tail seahorse	MODERN SPECIES	136	polr2l (ENSHCOG00000008730)	ENSHCOG00000008733	DAGLA (ENSHCOG00000008783)	ext2 (ENSHCOG00000008840)	ALX4 (ENSHCOG00000008862)	caprin1a (ENSHCOG00000008874)	nucb2a (ENSHCOG00000008922)	mfge8a (ENSHCOG00000008936)	abhd2a (ENSHCOG00000008959)	abhd2a (ENSHCOG00000009102)	ENSHCOG00000009121	slc39a1 (ENSHCOG00000009130)	tmem208 (ENSHCOG00000009151)	smad6a (ENSHCOG00000009157) #15	SMAD3 (ENSHCOG00000009185) #18	map2k5 (ENSHCOG00000009231) #22	skor1a (ENSHCOG00000009245) #24	PIAS1 (ENSHCOG00000009718) #25	ENSHCOG00000000302	UACA (ENSHCOG00000009850)	TLE3 (ENSHCOG00000009901)	kif23 (ENSHCOG00000009985) #37	paqr5a (ENSHCOG00000010220) #36	glceb (ENSHCOG00000010239) #35	anp32a (ENSHCOG00000010440) #31	CORO2B (ENSHCOG00000010485) #30	itga11a (ENSHCOG00000010557) #29
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Carangaria_A	ANCESTRAL SPECIES	19	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Seriola	ANCESTRAL SPECIES	73	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00940000157231.b	ENSGT00950000183058.A.a.d	ENSGT00950000183058.A.b.b	ENSGT00390000018895.a	ENSGT00390000000155.a.a	ENSGT00390000011985	ENSGT01090000259985.b.b.a.a.k.b.d
Greater amberjack	MODERN SPECIES	242	dtwd1 (ENSSDUG00000016453)	ENSSDUG00000016471	spata5l1 (ENSSDUG00000016519)	zgc:153317 (ENSSDUG00000016526)	slc30a4 (ENSSDUG00000016531)	bloc1s6 (ENSSDUG00000016550)	mibp2 (ENSSDUG00000016586)	HAPLN3 (ENSSDUG00000016925)	mfge8a (ENSSDUG00000016943)	abhd2a (ENSSDUG00000016969)	ENSSDUG00000017002	slc39a1 (ENSSDUG00000017030)	tmem208 (ENSSDUG00000017044)	smad6a (ENSSDUG00000017082) #15	SMAD3 (ENSSDUG00000017091) #18	map2k5 (ENSSDUG00000017109) #22	skor1a (ENSSDUG00000017148) #24	PIAS1 (ENSSDUG00000017186) #25	ENSSDUG00000017219	ENSSDUG00000017240	UACA (ENSSDUG00000017296)	TLE3 (ENSSDUG00000017338)	kif23 (ENSSDUG00000017423) #37	paqr5a (ENSSDUG00000017537) #36	gpa33a (ENSSDUG00000017645)	ENSSDUG00000017688	ildr1a (ENSSDUG00000017720)	tmem39a (ENSSDUG00000017772)	PRSS23 (ENSSDUG00000017799)	ENSSDUG00000017815	ENSSDUG00000017839
Yellowtail amberjack	MODERN SPECIES	2930	dtwd1 (ENSSLDG00000009340)	ENSSLDG00000009249	spata5l1 (ENSSLDG00000009352)	zgc:153317 (ENSSLDG00000009371)	slc30a4 (ENSSLDG00000009443)	bloc1s6 (ENSSLDG00000009498)	mibp2 (ENSSLDG00000009812)	HAPLN3 (ENSSLDG00000010248)	mfge8a (ENSSLDG00000010267)	abhd2a (ENSSLDG00000010303)	rlbp1a (ENSSLDG00000010365)	slc39a1 (ENSSLDG00000010382)	tmem208 (ENSSLDG00000010399)	smad6a (ENSSLDG00000010424) #15	SMAD3 (ENSSLDG00000010443) #18	map2k5 (ENSSLDG00000010494) #22	skor1a (ENSSLDG00000010569) #24	PIAS1 (ENSSLDG00000010594) #25	ENSSLDG00000010659	ENSSLDG00000010683	UACA (ENSSLDG00000010731)	TLE3 (ENSSLDG00000010840)	kif23 (ENSSLDG00000010981) #37	paqr5a (ENSSLDG00000011203) #36	ENSSLDG00000011227	ENSSLDG00000011255	ildr1a (ENSSLDG00000011305)	tmem39a (ENSSLDG00000011350)	PRSS23 (ENSSLDG00000011393)	ENSSLDG00000011408	ENSSLDG00000011434
Barramundi perch	MODERN SPECIES	96	dtwd1 (ENSLCAG00010001874)	ENSLCAG00010001461	spata5l1 (ENSLCAG00010001260)	zgc:153317 (ENSLCAG00010001243)	slc30a4 (ENSLCAG00010001238)	bloc1s6 (ENSLCAG00010001233)	mibp2 (ENSLCAG00010001214)	HAPLN3 (ENSLCAG00010001202)	mfge8a (ENSLCAG00010001190)	abhd2a (ENSLCAG00010001176)	ENSLCAG00010001169	slc39a1 (ENSLCAG00010001163)	tmem208 (ENSLCAG00010001154)	smad6a (ENSLCAG00010001144) #15	SMAD3 (ENSLCAG00010001077) #18	map2k5 (ENSLCAG00010001045) #22	skor1a (ENSLCAG00010001038) #24	PIAS1 (ENSLCAG00010001027) #25	ENSLCAG00010001024	ENSLCAG00010001017	UACA (ENSLCAG00010001004)	TLE3 (ENSLCAG00010000716)	kif23 (ENSLCAG00010000311) #37	paqr5a (ENSLCAG00010000180) #36	glceb (ENSLCAG00010021542) #35	anp32a (ENSLCAG00010021535) #31	CORO2B (ENSLCAG00010021461) #30	itga11a (ENSLCAG00010021386) #29	ENSLCAG00010021364	ADAMTS7 (ENSLCAG00010021162)	calml4a (ENSLCAG00010021069) #26
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37
Turbot	MODERN SPECIES	17	DTWD1 (ENSSMAG00000021289)	ENSSMAG00000021288	spata5l1 (ENSSMAG00000021290)	zgc:153317 (ENSSMAG00000029975)	slc30a4 (ENSSMAG00000021292)	bloc1s6 (ENSSMAG00000021293)	mibp2 (ENSSMAG00000021294)	HAPLN3 (ENSSMAG00000030247)	MFGE8 (ENSSMAG00000021296)	abhd2a (ENSSMAG00000021297)	ENSSMAG00000021298	slc39a1 (ENSSMAG00000034740)	ENSSMAG00000021300	smad6a (ENSSMAG00000021301) #15	ENSSMAG00000021302 #18	map2k5 (ENSSMAG00000021303) #22	skor1a (ENSSMAG00000017446) #24	PIAS1 (ENSSMAG00000021305) #25	ENSSMAG00000021306	ENSSMAG00000021307	UACA (ENSSMAG00000021308)	ENSSMAG00000021309	KIF23 (ENSSMAG00000021310) #37	ENSSMAG00000021311	grk1a (ENSSMAG00000021312)	ENSSMAG00000021313	pros1 (ENSSMAG00000021314)	ENSSMAG00000021316	ENSSMAG00000021317	ENSSMAG00000021318	mettl21e (ENSSMAG00000036671)
Tongue sole	MODERN SPECIES	15	dtwd1 (ENSCSEG00000012745)	ENSCSEG00000012721	spata5l1 (ENSCSEG00000012712)	zgc:153317 (ENSCSEG00000012700)	slc30a4 (ENSCSEG00000012686)	bloc1s6 (ENSCSEG00000012676)	mibp2 (ENSCSEG00000012672)	HAPLN3 (ENSCSEG00000012667)	mfge8a (ENSCSEG00000012660)	abhd2a (ENSCSEG00000012650)	ENSCSEG00000012628	slc39a1 (ENSCSEG00000012617)	tmem208 (ENSCSEG00000012613)	SMAD6 (ENSCSEG00000012602) #15	SMAD3 (ENSCSEG00000012585) #18	map2k5 (ENSCSEG00000012573) #22	ccnd1 (ENSCSEG00000012564)	vstm2b (ENSCSEG00000012557)	scg3 (ENSCSEG00000012546)	lysmd2 (ENSCSEG00000012539)	tmod2 (ENSCSEG00000012523)	leo1 (ENSCSEG00000012502)	mapk6 (ENSCSEG00000012488)	ENSCSEG00000012481	USP8 (ENSCSEG00000012449)	hdc (ENSCSEG00000010006)	slc27a2a (ENSCSEG00000009981)	gatm (ENSCSEG00000009953)	pde8a (ENSCSEG00000009892)	ENSCSEG00000009860	FSD2 (ENSCSEG00000009849)
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Zig-zag eel	MODERN SPECIES	17	FGF7 (ENSMAMG00000011783)	dtwd1 (ENSMAMG00000026826)	ENSMAMG00000011790	spata5l1 (ENSMAMG00000011820)	zgc:153317 (ENSMAMG00000011844)	slc30a4 (ENSMAMG00000011974)	bloc1s6 (ENSMAMG00000012006)	mibp2 (ENSMAMG00000012031)	MFGE8 (ENSMAMG00000012053)	abhd2a (ENSMAMG00000012096)	ENSMAMG00000028309	slc39a1 (ENSMAMG00000012122)	ENSMAMG00000012132	smad6a (ENSMAMG00000012145) #15	ENSMAMG00000012151 #18	map2k5 (ENSMAMG00000012181) #22	skor1a (ENSMAMG00000012260) #24	PIAS1 (ENSMAMG00000012267) #25	ENSMAMG00000012294	ENSMAMG00000012298	UACA (ENSMAMG00000012323)	TLE3 (ENSMAMG00000012393)	KIF23 (ENSMAMG00000012444) #37	paqr5a (ENSMAMG00000012518) #36	glceb (ENSMAMG00000012531) #35	anp32a (ENSMAMG00000012549) #31	CORO2B (ENSMAMG00000012992) #30	itga11a (ENSMAMG00000013043) #29	ENSMAMG00000013288	ENSMAMG00000013295	ENSMAMG00000024970 #26
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Siamese fighting fish	MODERN SPECIES	14	mex3b (ENSBSLG00000012539)	TMC3 (ENSBSLG00000013204)	STARD5 (ENSBSLG00000013516)	ENSBSLG00000013538	ENSBSLG00000013562	ENSBSLG00000013565	TLNRD1 (ENSBSLG00000013582)	mesd (ENSBSLG00000013590)	CEMIP (ENSBSLG00000013631)	abhd17c (ENSBSLG00000013888)	arnt2 (ENSBSLG00000013944)	slc39a1 (ENSBSLG00000015065)	tmem208 (ENSBSLG00000015071)	smad6a (ENSBSLG00000015189) #15	SMAD3 (ENSBSLG00000015371) #18	map2k5 (ENSBSLG00000015497) #22	skor1a (ENSBSLG00000015827) #24	PIAS1 (ENSBSLG00000015831) #25	ENSBSLG00000015843	ENSBSLG00000015851	UACA (ENSBSLG00000015891)	TLE3 (ENSBSLG00000015954)	ENSBSLG00000016193	kif23 (ENSBSLG00000016203) #37	ccnb2 (ENSBSLG00000003737)	crybgx (ENSBSLG00000003749)	lctla (ENSBSLG00000003847) #14	tipin (ENSBSLG00000003982) #7	dis3l (ENSBSLG00000003997)	ENSBSLG00000004040	ENSBSLG00000004060
Climbing perch	MODERN SPECIES	16	dtwd1 (ENSATEG00000029513)	ENSATEG00000018300	spata5l1 (ENSATEG00000018358)	zgc:153317 (ENSATEG00000018366)	slc30a4 (ENSATEG00000018417)	bloc1s6 (ENSATEG00000026597)	mibp2 (ENSATEG00000018455)	MFGE8 (ENSATEG00000018480)	abhd2a (ENSATEG00000018488)	ENSATEG00000018520	slc39a1 (ENSATEG00000028960)	ENSATEG00000025806	smad6a (ENSATEG00000018586) #15	ENSATEG00000018596 #18	ENSATEG00000013157	map2k5 (ENSATEG00000018621) #22	skor1a (ENSATEG00000018667) #24	PIAS1 (ENSATEG00000018702) #25	ENSATEG00000018750	ENSATEG00000018759	UACA (ENSATEG00000018820)	ENSATEG00000029029	TLE3 (ENSATEG00000018867)	KIF23 (ENSATEG00000018953) #37	paqr5a (ENSATEG00000019041) #36	glceb (ENSATEG00000029034) #35	anp32a (ENSATEG00000019093) #31	CORO2B (ENSATEG00000019122) #30	itga11a (ENSATEG00000019167) #29	ENSATEG00000019184	ENSATEG00000019217
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Cottioidei	ANCESTRAL SPECIES	13	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Stickleback	MODERN SPECIES	1	dtwd1 (ENSGACG00000016809)	ENSGACG00000016813	spata5l1 (ENSGACG00000016834)	slc30a4 (ENSGACG00000016836)	bloc1s6 (ENSGACG00000016843)	mibp2 (ENSGACG00000016845)	HAPLN3 (ENSGACG00000016853)	mfge8a (ENSGACG00000016860)	abhd2a (ENSGACG00000016866)	rlbp1a (ENSGACG00000016871)	ENSGACG00000016872	slc39a1 (ENSGACG00000016873)	tmem208 (ENSGACG00000016875)	smad6a (ENSGACG00000016878) #15	SMAD3 (ENSGACG00000016882) #18	map2k5 (ENSGACG00000016884) #22	skor1a (ENSGACG00000016891) #24	PIAS1 (ENSGACG00000016894) #25	ENSGACG00000016895	ENSGACG00000016897	UACA (ENSGACG00000016909)	TLE3 (ENSGACG00000016913)	kif23 (ENSGACG00000016920) #37	paqr5a (ENSGACG00000016926) #36	glceb (ENSGACG00000016931) #35	anp32a (ENSGACG00000016932) #31	CORO2B (ENSGACG00000016936) #30	itga11a (ENSGACG00000016944) #29	ENSGACG00000016952	ADAMTS7 (ENSGACG00000016953)	calml4a (ENSGACG00000016957) #26
Lumpfish	MODERN SPECIES	18	dtwd1 (ENSCLMG00005020326)	ENSCLMG00005020328	spata5l1 (ENSCLMG00005020375)	zgc:153317 (ENSCLMG00005020377)	slc30a4 (ENSCLMG00005020379)	bloc1s6 (ENSCLMG00005020380)	mibp2 (ENSCLMG00005020381)	HAPLN3 (ENSCLMG00005020382)	MFGE8 (ENSCLMG00005020383)	abhd2a (ENSCLMG00005020764)	rlbp1a (ENSCLMG00005020766)	slc39a1 (ENSCLMG00005020767)	tmem208 (ENSCLMG00005020768)	smad6a (ENSCLMG00005020770) #15	SMAD3 (ENSCLMG00005020772) #18	map2k5 (ENSCLMG00005020775) #22	skor1a (ENSCLMG00005020777) #24	PIAS1 (ENSCLMG00005020781) #25	ENSCLMG00005020791	ENSCLMG00005020792	UACA (ENSCLMG00005020794)	TLE3 (ENSCLMG00005020805)	KIF23 (ENSCLMG00005021061) #37	paqr5a (ENSCLMG00005021317) #36	glceb (ENSCLMG00005021318) #35	anp32a (ENSCLMG00005021319) #31	CORO2B (ENSCLMG00005021320) #30	itga11a (ENSCLMG00005021322) #29	ENSCLMG00005021328	ADAMTS7 (ENSCLMG00005021336)	calml4a (ENSCLMG00005021342) #26
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Pike perch	MODERN SPECIES	83	ENSSLUG00000022233	ENSSLUG00000021873	ENSSLUG00000020413	NFASC (ENSSLUG00000020174)	ENSSLUG00000020163	slc16a7 (ENSSLUG00000020153)	syt9b (ENSSLUG00000020146)	HAPLN3 (ENSSLUG00000020090)	mfge8a (ENSSLUG00000019421)	abhd2a (ENSSLUG00000019221)	rlbp1a (ENSSLUG00000019193)	slc39a1 (ENSSLUG00000019185)	tmem208 (ENSSLUG00000019177)	smad6a (ENSSLUG00000019173) #15	SMAD3 (ENSSLUG00000019159) #18	map2k5 (ENSSLUG00000019102) #22	skor1a (ENSSLUG00000019082) #24	PIAS1 (ENSSLUG00000018888) #25	ENSSLUG00000018849	ENSSLUG00000018706	UACA (ENSSLUG00000018662)	TLE3 (ENSSLUG00000018010)
Channel bull blenny	MODERN SPECIES	17	dtwd1 (ENSCGOG00000013385)	ENSCGOG00000012050	spata5l1 (ENSCGOG00000012018)	zgc:153317 (ENSCGOG00000012017)	slc30a4 (ENSCGOG00000011952)	bloc1s6 (ENSCGOG00000011946)	mibp2 (ENSCGOG00000011896)	HAPLN3 (ENSCGOG00000011875)	mfge8a (ENSCGOG00000011837)	abhd2a (ENSCGOG00000011430)	rlbp1a (ENSCGOG00000011827)	slc39a1 (ENSCGOG00000011417)	tmem208 (ENSCGOG00000011411)	smad6a (ENSCGOG00000011407) #15	SMAD3 (ENSCGOG00000011028) #18	map2k5 (ENSCGOG00000011019) #22	skor1a (ENSCGOG00000011015) #24	PIAS1 (ENSCGOG00000010586) #25	ENSCGOG00000010561	ENSCGOG00000010458	UACA (ENSCGOG00000010448)	TLE3 (ENSCGOG00000004700)	kif23 (ENSCGOG00000003399) #37	paqr5a (ENSCGOG00000003316) #36	glceb (ENSCGOG00000003305) #35	anp32a (ENSCGOG00000003301) #31	CORO2B (ENSCGOG00000003143) #30	itga11a (ENSCGOG00000003093) #29	ENSCGOG00000003088	ADAMTS7 (ENSCGOG00000002764)	calml4a (ENSCGOG00000002644) #26
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Gilthead seabream	MODERN SPECIES	18	zgc:153317 (ENSSAUG00010001990)	slc30a4 (ENSSAUG00010001988)	bloc1s6 (ENSSAUG00010001982)	mibp2 (ENSSAUG00010001974)	HAPLN3 (ENSSAUG00010001971)	mfge8a (ENSSAUG00010001355)	rlbp1a (ENSSAUG00010001297)	abhd2a (ENSSAUG00010001289)	ENSSAUG00010001286	slc39a1 (ENSSAUG00010001284)	tmem208 (ENSSAUG00010001282)	smad6a (ENSSAUG00010001276) #15	SMAD3 (ENSSAUG00010001244) #18	ENSSAUG00010001237	ENSSAUG00010001233	map2k5 (ENSSAUG00010001213) #22	skor1a (ENSSAUG00010001195) #24	PIAS1 (ENSSAUG00010001185) #25	ENSSAUG00010001179	ENSSAUG00010001176	UACA (ENSSAUG00010001078)	TLE3 (ENSSAUG00010000571)	ENSSAUG00010000433	kif23 (ENSSAUG00010000357) #37	paqr5a (ENSSAUG00010000298) #36	glceb (ENSSAUG00010000286) #35	ENSSAUG00010000277	ENSSAUG00010000274	ENSSAUG00010000224	ENSSAUG00010000195	anp32a (ENSSAUG00010000179) #31
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
European seabass	MODERN SPECIES	18	FGF7 (ENSDLAG00005011794)	dtwd1 (ENSDLAG00005011800)	spata5l1 (ENSDLAG00005012044)	zgc:153317 (ENSDLAG00005012056)	ENSDLAG00005011812	bloc1s6 (ENSDLAG00005029813)	mibp2 (ENSDLAG00005012080)	HAPLN3 (ENSDLAG00005012094)	MFGE8 (ENSDLAG00005012122)	abhd2a (ENSDLAG00005012210)	ENSDLAG00005032428	slc39a1 (ENSDLAG00005012303)	ENSDLAG00005028664	smad6a (ENSDLAG00005012334) #15	ENSDLAG00005012347 #18	map2k5 (ENSDLAG00005012424) #22	skor1a (ENSDLAG00005012682) #24	PIAS1 (ENSDLAG00005012766) #25	ENSDLAG00005013277	ENSDLAG00005013288	UACA (ENSDLAG00005013331)	TLE3 (ENSDLAG00005013590)	KIF23 (ENSDLAG00005014683) #37	paqr5a (ENSDLAG00005016531) #36	glceb (ENSDLAG00005016598) #35	anp32a (ENSDLAG00005031356) #31	CORO2B (ENSDLAG00005034094) #30	itga11a (ENSDLAG00005016823) #29	ENSDLAG00005017414	ENSDLAG00005017441	ENSDLAG00005026050
Large yellow croaker	MODERN SPECIES	480	dtwd1 (ENSLCRG00005000391)	ENSLCRG00005000460	spata5l1 (ENSLCRG00005005473)	zgc:153317 (ENSLCRG00005005477)	slc30a4 (ENSLCRG00005005479)	bloc1s6 (ENSLCRG00005005480)	mibp2 (ENSLCRG00005005482)	HAPLN3 (ENSLCRG00005005483)	mfge8a (ENSLCRG00005005484)	abhd2a (ENSLCRG00005005487)	ENSLCRG00005005803	slc39a1 (ENSLCRG00005005804)	tmem208 (ENSLCRG00005005805)	smad6a (ENSLCRG00005005807) #15	SMAD3 (ENSLCRG00005005810) #18	map2k5 (ENSLCRG00005005909) #22	skor1a (ENSLCRG00005006374) #24	PIAS1 (ENSLCRG00005006385) #25	ENSLCRG00005006537	ENSLCRG00005006538	UACA (ENSLCRG00005006539)	TLE3 (ENSLCRG00005006727)	kif23 (ENSLCRG00005007885) #37	paqr5a (ENSLCRG00005008119) #36	glceb (ENSLCRG00005008122) #35	anp32a (ENSLCRG00005008124) #31	CORO2B (ENSLCRG00005008131) #30	itga11a (ENSLCRG00005008190) #29	ENSLCRG00005008193	ADAMTS7 (ENSLCRG00005008214)	calml4a (ENSLCRG00005010143) #26
Ballan wrasse	MODERN SPECIES	104	znf609b (ENSLBEG00000018286)	trip4 (ENSLBEG00000018354)	chrna7a (ENSLBEG00000018486)	ENSLBEG00000018521 #27	calml4a (ENSLBEG00000018565) #26	ADAMTS7 (ENSLBEG00000018586)	ENSLBEG00000018644	itga11a (ENSLBEG00000018674) #29	CORO2B (ENSLBEG00000018741) #30	anp32a (ENSLBEG00000018773) #31	rlbp1a (ENSLBEG00000018790)	slc39a1 (ENSLBEG00000018824)	tmem208 (ENSLBEG00000018834)	smad6a (ENSLBEG00000018875) #15	SMAD3 (ENSLBEG00000018909) #18	map2k5 (ENSLBEG00000018972) #22	skor1a (ENSLBEG00000019091) #24	PIAS1 (ENSLBEG00000019115) #25	ENSLBEG00000019169	ENSLBEG00000019201
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Fugu	MODERN SPECIES	4	zgc:153317 (ENSTRUG00000016908)	slc30a4 (ENSTRUG00000019868)	bloc1s6 (ENSTRUG00000021749)	mibp2 (ENSTRUG00000016897)	HAPLN3 (ENSTRUG00000016895)	mfge8a (ENSTRUG00000016888)	smad6a (ENSTRUG00000032173) #15	abhd2a (ENSTRUG00000016883)	rlbp1a (ENSTRUG00000016880)	slc39a1 (ENSTRUG00000016874)	tmem208 (ENSTRUG00000026186)	tmem208 (ENSTRUG00000016873)	ENSTRUG00000029807	smad6a (ENSTRUG00000022333) #15	SMAD3 (ENSTRUG00000002512) #18	map2k5 (ENSTRUG00000016851) #22	skor1a (ENSTRUG00000016849) #24	PIAS1 (ENSTRUG00000016843) #25	ENSTRUG00000016840	ENSTRUG00000016836	UACA (ENSTRUG00000016819)	TLE3 (ENSTRUG00000016796)	kif23 (ENSTRUG00000016789) #37	paqr5a (ENSTRUG00000016784) #36	glceb (ENSTRUG00000024535) #35	anp32a (ENSTRUG00000028503) #31	CORO2B (ENSTRUG00000016762) #30	itga11a (ENSTRUG00000016742) #29	ENSTRUG00000016739	ADAMTS7 (ENSTRUG00000016709)	calml4a (ENSTRUG00000016707) #26
Tetraodon	MODERN SPECIES	20	cops2 (ENSTNIG00000009532)	FGF7 (ENSTNIG00000009533)	dtwd1 (ENSTNIG00000009534)	ENSTNIG00000009535	spata5l1 (ENSTNIG00000009536)	slc30a4 (ENSTNIG00000009537)	bloc1s6 (ENSTNIG00000009538)	mibp2 (ENSTNIG00000009539)	HAPLN3 (ENSTNIG00000009540)	mfge8a (ENSTNIG00000009541)	abhd2a (ENSTNIG00000009542)	rlbp1a (ENSTNIG00000009543)	slc39a1 (ENSTNIG00000009544)	smad6a (ENSTNIG00000009545) #15	SMAD3 (ENSTNIG00000009546) #18	map2k5 (ENSTNIG00000009547) #22	skor1a (ENSTNIG00000009548) #24	PIAS1 (ENSTNIG00000009549) #25	ENSTNIG00000009550	ENSTNIG00000009551	UACA (ENSTNIG00000009552)	TLE3 (ENSTNIG00000009554)	kif23 (ENSTNIG00000009555) #37	paqr5a (ENSTNIG00000009556) #36	glceb (ENSTNIG00000009557) #35	anp32a (ENSTNIG00000009558) #31	CORO2B (ENSTNIG00000009559) #30	itga11a (ENSTNIG00000009560) #29	ENSTNIG00000009561	ADAMTS7 (ENSTNIG00000009562)	calml4a (ENSTNIG00000009563) #26
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Pomacentridae	ANCESTRAL SPECIES	15	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc.d	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Pomacentridae_A	ANCESTRAL SPECIES	28	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc.d	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819
Amphiprion	ANCESTRAL SPECIES	88	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc.d	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT01030000235447	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00940000155405
Clown anemonefish	MODERN SPECIES	891															ENSAOCG00000014225	map2k5 (ENSAOCG00000014380) #22	skor1a (ENSAOCG00000002768) #24	PIAS1 (ENSAOCG00000014498) #25	ENSAOCG00000014520
Orange clownfish	MODERN SPECIES		fgf7 (ENSAPEG00000000282)	dtwd1 (ENSAPEG00000000284)	ENSAPEG00000000285	spata5l1 (ENSAPEG00000000289)	zgc:153317 (ENSAPEG00000000290)	slc30a4 (ENSAPEG00000000342)	bloc1s6 (ENSAPEG00000000384)	mibp2 (ENSAPEG00000000403)	mfge8a (ENSAPEG00000000448)	abhd2a (ENSAPEG00000000449)	ENSAPEG00000000487	slc39a1 (ENSAPEG00000000497)	tmem208 (ENSAPEG00000000523)	smad6a (ENSAPEG00000000562) #15	SMAD3 (ENSAPEG00000000565) #18	map2k5 (ENSAPEG00000000578) #22	ENSAPEG00000000686	skor1a (ENSAPEG00000000759) #24	PIAS1 (ENSAPEG00000000768) #25	ENSAPEG00000000820	ENSAPEG00000000905	UACA (ENSAPEG00000000937)	TLE3 (ENSAPEG00000000988)	kif23 (ENSAPEG00000001068) #37	paqr5a (ENSAPEG00000001179) #36	glceb (ENSAPEG00000001226) #35	arfgap2 (ENSAPEG00000001255)	pex16 (ENSAPEG00000001278)	cars1 (ENSAPEG00000001363)	ENSAPEG00000001429	ccnb2 (ENSAPEG00000001449)
Spiny chromis	MODERN SPECIES	1560																map2k5 (ENSAPOG00000007913) #22	skor1a (ENSAPOG00000007813) #24
Bicolor damselfish	MODERN SPECIES	300	fgf7 (ENSSPAG00000019797)	dtwd1 (ENSSPAG00000019785)	ENSSPAG00000019732	spata5l1 (ENSSPAG00000019717)	zgc:153317 (ENSSPAG00000019658)	slc30a4 (ENSSPAG00000019624)	bloc1s6 (ENSSPAG00000019598)	mibp2 (ENSSPAG00000019569)	mfge8a (ENSSPAG00000019544)	abhd2a (ENSSPAG00000019523)	ENSSPAG00000019507	slc39a1 (ENSSPAG00000019503)	tmem208 (ENSSPAG00000019488)	smad6a (ENSSPAG00000019475) #15	SMAD3 (ENSSPAG00000019459) #18	map2k5 (ENSSPAG00000019430) #22	skor1a (ENSSPAG00000019416) #24	PIAS1 (ENSSPAG00000019364) #25	ENSSPAG00000019352	ENSSPAG00000019312	UACA (ENSSPAG00000019241)	TLE3 (ENSSPAG00000019170)
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000000223	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000000223	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Lyretail cichlid	MODERN SPECIES	320	zgc:153317 (ENSNBRG00000022374)	slc30a4 (ENSNBRG00000022345)	bloc1s6 (ENSNBRG00000022319)	mibp2 (ENSNBRG00000022296)	HAPLN3 (ENSNBRG00000022217)	mfge8a (ENSNBRG00000022184)	abhd2a (ENSNBRG00000022158)	ENSNBRG00000022124	ENSNBRG00000022117	slc39a1 (ENSNBRG00000022103)	ENSNBRG00000022097	STOM (ENSNBRG00000022084)	tmem208 (ENSNBRG00000022070)	smad6a (ENSNBRG00000022000) #15	SMAD3 (ENSNBRG00000021957) #18	map2k5 (ENSNBRG00000021875) #22	skor1a (ENSNBRG00000021849) #24	PIAS1 (ENSNBRG00000021813) #25	ENSNBRG00000021798	ENSNBRG00000021781	UACA (ENSNBRG00000021740)	TLE3 (ENSNBRG00000021683)	kif23 (ENSNBRG00000021562) #37	paqr5a (ENSNBRG00000021452) #36	glceb (ENSNBRG00000021430) #35	anp32a (ENSNBRG00000021326) #31	CORO2B (ENSNBRG00000021273) #30	itga11a (ENSNBRG00000021060) #29	ENSNBRG00000021011	ENSNBRG00000020929	calml4a (ENSNBRG00000020905) #26
Haplochromini	ANCESTRAL SPECIES	11	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000000223	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Burton s mouthbrooder	MODERN SPECIES	530	spata5l1 (ENSHBUG00000012355)	zgc:153317 (ENSHBUG00000012341)	slc30a4 (ENSHBUG00000012324)	bloc1s6 (ENSHBUG00000012295)	mibp2 (ENSHBUG00000012273)	HAPLN3 (ENSHBUG00000012266)	mfge8a (ENSHBUG00000012251)	abhd2a (ENSHBUG00000000339)	ENSHBUG00000012195	slc39a1 (ENSHBUG00000012168)	STOM (ENSHBUG00000012152)	ENSHBUG00000012137	tmem208 (ENSHBUG00000012128)	smad6a (ENSHBUG00000012111) #15	SMAD3 (ENSHBUG00000012089) #18	map2k5 (ENSHBUG00000012063) #22	skor1a (ENSHBUG00000012018) #24	ENSHBUG00000012004
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000000223	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000159628.c	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT01030000234614.B.a.a.a.s.b	ENSGT00390000000223	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Eastern happy	MODERN SPECIES		spata5l1 (ENSACLG00000016764)	zgc:153317 (ENSACLG00000016750)	slc30a4 (ENSACLG00000016688)	bloc1s6 (ENSACLG00000016660)	mibp2 (ENSACLG00000016621)	HAPLN3 (ENSACLG00000016603)	mfge8a (ENSACLG00000016536)	abhd2a (ENSACLG00000016471)	ENSACLG00000016438	slc39a1 (ENSACLG00000016397)	ENSACLG00000016386	STOM (ENSACLG00000016358)	tmem208 (ENSACLG00000016345)	smad6a (ENSACLG00000016319) #15	SMAD3 (ENSACLG00000016303) #18	map2k5 (ENSACLG00000015946) #22	skor1a (ENSACLG00000015826) #24	PIAS1 (ENSACLG00000015737) #25	ENSACLG00000015720	ENSACLG00000015610	UACA (ENSACLG00000015543)	ENSACLG00000015492	TLE3 (ENSACLG00000015299)	kif23 (ENSACLG00000015017) #37	paqr5a (ENSACLG00000014930) #36	ENSACLG00000014925	glceb (ENSACLG00000014893) #35	anp32a (ENSACLG00000014426) #31	CORO2B (ENSACLG00000014399) #30	itga11a (ENSACLG00000014230) #29	ENSACLG00000014204
Zebra mbuna	MODERN SPECIES	1091	zgc:153317 (ENSMZEG00005012182)	slc30a4 (ENSMZEG00005012190)	bloc1s6 (ENSMZEG00005012197)	ENSMZEG00005012203	mibp2 (ENSMZEG00005012218)	HAPLN3 (ENSMZEG00005012228)	mfge8a (ENSMZEG00005012239)	abhd2a (ENSMZEG00005012251)	ENSMZEG00005012269	slc39a1 (ENSMZEG00005012287)	STOM (ENSMZEG00005012297)	ENSMZEG00005012309	tmem208 (ENSMZEG00005012330)	smad6a (ENSMZEG00005012354) #15	SMAD3 (ENSMZEG00005012369) #18	map2k5 (ENSMZEG00005012392) #22	skor1a (ENSMZEG00005012422) #24	PIAS1 (ENSMZEG00005012429) #25	ENSMZEG00005012461	ENSMZEG00005012470	UACA (ENSMZEG00005012517)	TLE3 (ENSMZEG00005012572)	kif23 (ENSMZEG00005012665) #37	paqr5a (ENSMZEG00005012750) #36	glceb (ENSMZEG00005012780) #35	anp32a (ENSMZEG00005012845) #31	CORO2B (ENSMZEG00005013278) #30	itga11a (ENSMZEG00005013320) #29	ENSMZEG00005013397	ADAMTS7 (ENSMZEG00005013408)	calml4a (ENSMZEG00005013420) #26
P. nyererei	MODERN SPECIES	479	zgc:153317 (ENSPNYG00000008598)	spata5l1 (ENSPNYG00000008552)	slc30a4 (ENSPNYG00000008509)	bloc1s6 (ENSPNYG00000008469)	mibp2 (ENSPNYG00000008446)	HAPLN3 (ENSPNYG00000008243)	mfge8a (ENSPNYG00000008173)	abhd2a (ENSPNYG00000008142)	ENSPNYG00000008122	slc39a1 (ENSPNYG00000008054)	ENSPNYG00000008039	STOM (ENSPNYG00000008024)	tmem208 (ENSPNYG00000007964)	smad6a (ENSPNYG00000007929) #15	SMAD3 (ENSPNYG00000007902) #18	map2k5 (ENSPNYG00000007807) #22	skor1a (ENSPNYG00000007786) #24	PIAS1 (ENSPNYG00000007731) #25
Nile tilapia	MODERN SPECIES		spata5l1 (ENSONIG00000013321)	zgc:153317 (ENSONIG00000038594)	bloc1s6 (ENSONIG00000013314)	slc30a4 (ENSONIG00000013317)	mibp2 (ENSONIG00000013305)	HAPLN3 (ENSONIG00000013302)	mfge8a (ENSONIG00000013296)	abhd2a (ENSONIG00000013290)	ENSONIG00000013288	slc39a1 (ENSONIG00000013286)	STOM (ENSONIG00000020887)	ENSONIG00000042582	tmem208 (ENSONIG00000013283)	smad6a (ENSONIG00000013280) #15	SMAD3 (ENSONIG00000013271) #18	map2k5 (ENSONIG00000036681) #22	skor1a (ENSONIG00000013261) #24	ENSONIG00000027793	PIAS1 (ENSONIG00000013251) #25	ENSONIG00000013250	ENSONIG00000013241	UACA (ENSONIG00000013232)	TLE3 (ENSONIG00000013230)	kif23 (ENSONIG00000013226) #37	paqr5a (ENSONIG00000013225) #36	glceb (ENSONIG00000013224) #35	anp32a (ENSONIG00000005652) #31	CORO2B (ENSONIG00000005661) #30	ENSONIG00000041808	itga11a (ENSONIG00000005664) #29	ENSONIG00000005676
Midas cichlid	MODERN SPECIES	219															SMAD3 (ENSACIG00000016525) #18	map2k5 (ENSACIG00000016556) #22	skor1a (ENSACIG00000016692) #24	PIAS1 (ENSACIG00000016703) #25	ENSACIG00000016738	ENSACIG00000016748	UACA (ENSACIG00000016798)	TLE3 (ENSACIG00000016842)	kif23 (ENSACIG00000016900) #37	paqr5a (ENSACIG00000017168) #36	glceb (ENSACIG00000017271) #35	anp32a (ENSACIG00000017282) #31	CORO2B (ENSACIG00000017345) #30	itga11a (ENSACIG00000017368) #29	ENSACIG00000017458	ADAMTS7 (ENSACIG00000017468)	calml4a (ENSACIG00000017515) #26
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Aplocheiloidei	ANCESTRAL SPECIES	39										ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Mangrove rivulus	MODERN SPECIES	48	tpcn2 (ENSKMAG00000012198)	nadsyn1 (ENSKMAG00000012135)	DOK4 (ENSKMAG00000012096)	ccdc102a (ENSKMAG00000012052)	txlng (ENSKMAG00000012016)	rbb4l (ENSKMAG00000011977)	HDGFL3 (ENSKMAG00000011937)	TSSK2 (ENSKMAG00000011920)	BNC1 (ENSKMAG00000011907)	gjd6 (ENSKMAG00000011890)	ENSKMAG00000011864	slc39a1 (ENSKMAG00000011846)	tmem208 (ENSKMAG00000011828)	smad6a (ENSKMAG00000011817) #15	SMAD3 (ENSKMAG00000011796) #18	map2k5 (ENSKMAG00000011774) #22	skor1a (ENSKMAG00000011761) #24	PIAS1 (ENSKMAG00000011737) #25	ENSKMAG00000011711	ENSKMAG00000011691	UACA (ENSKMAG00000011640)	TLE3 (ENSKMAG00000011582)
Turquoise killifish	MODERN SPECIES	1616	cops2 (ENSNFUG00015011860)	fgf7 (ENSNFUG00015011824)	DTWD1 (ENSNFUG00015011814)	ENSNFUG00015011688	SPATA5L1 (ENSNFUG00015011676)	zgc:153317 (ENSNFUG00015011668)	SLC30A4 (ENSNFUG00015011646)	bloc1s6 (ENSNFUG00015011632)	MIBP2 (ENSNFUG00015011622)	ENSNFUG00015011612	ENSNFUG00015011607	MFGE8 (ENSNFUG00015010533)	ENSNFUG00015010457	SMAD6A (ENSNFUG00015010448) #15	ENSNFUG00015010440 #18	map2k5 (ENSNFUG00015010331) #22	SKOR1B (ENSNFUG00015010285) #24	PIAS1 (ENSNFUG00015010276) #25	ENSNFUG00015010263	ENSNFUG00015009472	TLE3 (ENSNFUG00015008874)	ENSNFUG00015008820	KIF23 (ENSNFUG00015007554) #37	ENSNFUG00015007446	paqr5a (ENSNFUG00015007434) #36	GLCE (ENSNFUG00015007420) #35	ANP32A (ENSNFUG00015007414) #31	CORO2B (ENSNFUG00015007223) #30	ENSNFUG00015007197	ENSNFUG00015007194	itga11a (ENSNFUG00015007171) #29
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
NAME_6	ANCESTRAL SPECIES	52	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Amazon molly	MODERN SPECIES	403	ENSPFOG00000005055	spata5l1 (ENSPFOG00000005380)	zgc:153317 (ENSPFOG00000005494)	zgc:153317 (ENSPFOG00000005496)	slc30a4 (ENSPFOG00000005499)	bloc1s6 (ENSPFOG00000005582)	mibp2 (ENSPFOG00000005643)	mfge8a (ENSPFOG00000005778)	ENSPFOG00000024476	abhd2a (ENSPFOG00000005907)	ENSPFOG00000006011	slc39a1 (ENSPFOG00000006114)	tmem208 (ENSPFOG00000006153)	smad6a (ENSPFOG00000006234) #15	SMAD3 (ENSPFOG00000006336) #18	map2k5 (ENSPFOG00000006546) #22	skor1a (ENSPFOG00000006793) #24	PIAS1 (ENSPFOG00000006900) #25	ENSPFOG00000020296	ENSPFOG00000007139	UACA (ENSPFOG00000007243)	TLE3 (ENSPFOG00000007542)	kif23 (ENSPFOG00000007858) #37	paqr5a (ENSPFOG00000023869) #36	glceb (ENSPFOG00000008134) #35	anp32a (ENSPFOG00000008166) #31	CORO2B (ENSPFOG00000008252) #30	itga11a (ENSPFOG00000008460) #29	ENSPFOG00000020297
Sailfin molly	MODERN SPECIES	1096											tmem208 (ENSPLAG00000011590)	SMAD6 (ENSPLAG00000011576) #15	ENSPLAG00000011555	ENSPLAG00000011547	SMAD3 (ENSPLAG00000011537) #18	map2k5 (ENSPLAG00000000623) #22
Guppy	MODERN SPECIES	455	dtwd1 (ENSPREG00000008579)	ENSPREG00000008549	spata5l1 (ENSPREG00000008513)	zgc:153317 (ENSPREG00000008498)	slc30a4 (ENSPREG00000008454)	bloc1s6 (ENSPREG00000008429)	mibp2 (ENSPREG00000008371)	ENSPREG00000008362	mfge8a (ENSPREG00000008344)	abhd2a (ENSPREG00000008309)	ENSPREG00000008292	slc39a1 (ENSPREG00000008271)	tmem208 (ENSPREG00000008259)	smad6a (ENSPREG00000008242) #15	SMAD3 (ENSPREG00000008224) #18	map2k5 (ENSPREG00000008097) #22	skor1a (ENSPREG00000008068) #24	PIAS1 (ENSPREG00000008008) #25	ENSPREG00000007994	ENSPREG00000007965	UACA (ENSPREG00000007848)	TLE3 (ENSPREG00000007793)	kif23 (ENSPREG00000007754) #37	paqr5a (ENSPREG00000007606) #36	glceb (ENSPREG00000007567) #35	anp32a (ENSPREG00000007226) #31	CORO2B (ENSPREG00000007107) #30	itga11a (ENSPREG00000006903) #29	ENSPREG00000006850	ADAMTS7 (ENSPREG00000006701)	calml4a (ENSPREG00000006653) #26
Platyfish	MODERN SPECIES	18	dtwd1 (ENSXMAG00000002282)	ENSXMAG00000002284	spata5l1 (ENSXMAG00000002298)	zgc:153317 (ENSXMAG00000002303)	zgc:153317 (ENSXMAG00000024159)	slc30a4 (ENSXMAG00000002304)	bloc1s6 (ENSXMAG00000002310)	mibp2 (ENSXMAG00000002314)	mfge8a (ENSXMAG00000024531)	abhd2a (ENSXMAG00000021333)	ENSXMAG00000013063	slc39a1 (ENSXMAG00000002358)	tmem208 (ENSXMAG00000025720)	smad6a (ENSXMAG00000002372) #15	SMAD3 (ENSXMAG00000002377) #18	map2k5 (ENSXMAG00000002396) #22	skor1a (ENSXMAG00000002428) #24	PIAS1 (ENSXMAG00000017552) #25	ENSXMAG00000017550	ENSXMAG00000017532	UACA (ENSXMAG00000000373)	TLE3 (ENSXMAG00000000395)	kif23 (ENSXMAG00000000438) #37	paqr5a (ENSXMAG00000025024) #36	glceb (ENSXMAG00000024396) #35	ENSXMAG00000023609	anp32a (ENSXMAG00000000465) #31	CORO2B (ENSXMAG00000000471) #30	itga11a (ENSXMAG00000000479) #29	ENSXMAG00000020123	ADAMTS7 (ENSXMAG00000000494)
NAME_4	ANCESTRAL SPECIES	6	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234534.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475
Mummichog	MODERN SPECIES	2381	fgf7 (ENSFHEG00000002649)	dtwd1 (ENSFHEG00000002658)	ENSFHEG00000002718	spata5l1 (ENSFHEG00000002745)	zgc:153317 (ENSFHEG00000002784)	slc30a4 (ENSFHEG00000002802)	bloc1s6 (ENSFHEG00000002826)	mibp2 (ENSFHEG00000002843)	mfge8a (ENSFHEG00000000710)	abhd2a (ENSFHEG00000002888)	ENSFHEG00000002949	slc39a1 (ENSFHEG00000002989)	tmem208 (ENSFHEG00000003000)	smad6a (ENSFHEG00000003014) #15	SMAD3 (ENSFHEG00000003038) #18	map2k5 (ENSFHEG00000003062) #22	skor1a (ENSFHEG00000003074) #24	PIAS1 (ENSFHEG00000003099) #25	ENSFHEG00000003106
Sheepshead minnow	MODERN SPECIES	834							mibp2 (ENSCVAG00000009587)	mfge8a (ENSCVAG00000009581)	abhd2a (ENSCVAG00000009566)	ENSCVAG00000009523	slc39a1 (ENSCVAG00000009508)	tmem208 (ENSCVAG00000009505)	smad6a (ENSCVAG00000009487) #15	ENSCVAG00000009481	SMAD3 (ENSCVAG00000009473) #18	map2k5 (ENSCVAG00000009451) #22	skor1a (ENSCVAG00000009402) #24
Oryzias	ANCESTRAL SPECIES	13	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00940000159843	ENSGT00940000153766.B	ENSGT00390000004624.a.b	ENSGT00940000160700	ENSGT00390000009277	ENSGT00940000157545	ENSGT00510000047812	ENSGT00940000159842.qc	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Javanese ricefish	MODERN SPECIES	17	fgf7 (ENSOJAG00000020912)	dtwd1 (ENSOJAG00000020909)	ENSOJAG00000020868	spata5l1 (ENSOJAG00000020864)	zgc:153317 (ENSOJAG00000020860)	slc30a4 (ENSOJAG00000020847)	bloc1s6 (ENSOJAG00000020836)	mibp2 (ENSOJAG00000020828)	mfge8a (ENSOJAG00000020551)	abhd2a (ENSOJAG00000020385)	ENSOJAG00000020364	slc39a1 (ENSOJAG00000020359)	tmem208 (ENSOJAG00000020347)	smad6a (ENSOJAG00000020339) #15	SMAD3 (ENSOJAG00000020254) #18	map2k5 (ENSOJAG00000020167) #22	skor1a (ENSOJAG00000020147) #24	PIAS1 (ENSOJAG00000020086) #25	ENSOJAG00000020045	ENSOJAG00000019954	UACA (ENSOJAG00000019870)	ENSOJAG00000019843	ENSOJAG00000019826	NDST2 (ENSOJAG00000019140)	polr1c (ENSOJAG00000016249)	fbxo28 (ENSOJAG00000016245)	nvl (ENSOJAG00000016228)	degs1 (ENSOJAG00000016199)	cryzl1 (ENSOJAG00000016141)	aprt (ENSOJAG00000016129)	ENSOJAG00000016117
Indian medaka	MODERN SPECIES	26	fgf7 (ENSOMEG00000009379)	dtwd1 (ENSOMEG00000009361)	ENSOMEG00000009339	spata5l1 (ENSOMEG00000009305)	zgc:153317 (ENSOMEG00000009283)	slc30a4 (ENSOMEG00000009252)	bloc1s6 (ENSOMEG00000009201)	mibp2 (ENSOMEG00000009172)	mfge8a (ENSOMEG00000009145)	abhd2a (ENSOMEG00000009120)	ENSOMEG00000009080	slc39a1 (ENSOMEG00000009055)	tmem208 (ENSOMEG00000009028)	smad6a (ENSOMEG00000008997) #15	SMAD3 (ENSOMEG00000008975) #18	map2k5 (ENSOMEG00000008936) #22	skor1a (ENSOMEG00000008837) #24	PIAS1 (ENSOMEG00000008788) #25	ENSOMEG00000008724	ENSOMEG00000008688	UACA (ENSOMEG00000008617)	TLE3 (ENSOMEG00000008528)	kif23 (ENSOMEG00000008392) #37	paqr5a (ENSOMEG00000008240) #36	glceb (ENSOMEG00000008185) #35	anp32a (ENSOMEG00000008151) #31	CORO2B (ENSOMEG00000008119) #30	itga11a (ENSOMEG00000008035) #29	ENSOMEG00000007855	ADAMTS7 (ENSOMEG00000007804)	calml4a (ENSOMEG00000007707) #26
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00390000009277	ENSGT00940000160700	ENSGT00390000004624.a.b	ENSGT00940000153766.B	ENSGT00940000159843	ENSGT00530000063301.a.b	ENSGT00490000043356.a	ENSGT00950000182870.b.a	ENSGT00940000156049.b	ENSGT00950000182902.b.a.d.a	ENSGT00940000164526.a	ENSGT00940000164669	ENSGT00390000008139	ENSGT00940000158146.a #15	ENSGT00940000153499.b.b.d.a.a #18	ENSGT00940000157505 #22	ENSGT00940000158440.g.a #24	ENSGT01030000234539.a.a.b.a.b.a.a #25	ENSGT01030000234518.B.a.b.a.b	ENSGT00950000182965.a.b.a.b	ENSGT00940000157475	ENSGT01030000234519.e.b.k.a	ENSGT00940000155837.p #37	ENSGT00940000158844 #36	ENSGT00390000006043 #35	ENSGT00950000182907.a.b.b.b #31	ENSGT00940000158689 #30	ENSGT00940000155465.i #29	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a #26
Japanese Medaka HdrR	MODERN SPECIES	17	zgc:153317 (ENSORLG00000029581)	spata5l1 (ENSORLG00000002443)	ENSORLG00000002434	dtwd1 (ENSORLG00000002373)	fgf7 (ENSORLG00000002360)	cops2 (ENSORLG00000002351)	SECISBP2L (ENSORLG00000002324)	ENSORLG00000026175	mfge8a (ENSORLG00000002302)	abhd2a (ENSORLG00000002287)	ENSORLG00000002257	slc39a1 (ENSORLG00000029570)	tmem208 (ENSORLG00000002234)	smad6a (ENSORLG00000002227) #15	ENSORLG00000002207 #18	map2k5 (ENSORLG00000002158) #22	ENSORLG00000028158	skor1a (ENSORLG00000002083) #24	PIAS1 (ENSORLG00000002077) #25	ENSORLG00000002054	ENSORLG00000024795	ENSORLG00000002048	UACA (ENSORLG00000001992)	TLE3 (ENSORLG00000001969)	ENSORLG00000024566	ENSORLG00000024768	KIF23 (ENSORLG00000001944) #37	paqr5a (ENSORLG00000001912) #36	glceb (ENSORLG00000001883) #35	anp32a (ENSORLG00000001871) #31	CORO2B (ENSORLG00000001847) #30
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	877										abhd2a (ENSOSIG00000006307)	ENSOSIG00000006306	slc39a1 (ENSOSIG00000006305)	tmem208 (ENSOSIG00000006304)	SMAD6 (ENSOSIG00000006302) #15	SMAD3 (ENSOSIG00000006301) #18	map2k5 (ENSOSIG00000006299) #22	snrpd1 (ENSOSIG00000006298)	ENSOSIG00000006296 #25	ENSOSIG00000004517	UACA (ENSOSIG00000004433)	TLE3 (ENSOSIG00000023308)	paqr5a (ENSOSIG00000023110) #36	glceb (ENSOSIG00000023107) #35	kif23 (ENSOSIG00000023101) #37	anp32a (ENSOSIG00000023072) #31	CORO2B (ENSOSIG00000023064) #30	itga11a (ENSOSIG00000023054) #29	ENSOSIG00000023050	ADAMTS7 (ENSOSIG00000022924)	calml4a (ENSOSIG00000022876) #26	CLN6 (ENSOSIG00000022875) #27
Chinese medaka	MODERN SPECIES	263																MAP2K5 (ENSOSIG00000014743) #22
Elephant shark	MODERN SPECIES	1767											smad3b (ENSCMIG00000015015) #18	aagab (ENSCMIG00000015014) #19	ENSCMIG00000015006 #20	iqch (ENSCMIG00000015002) #20	zgc:162898 (ENSCMIG00000014997) #21	map2k5 (ENSCMIG00000014975) #22	ENSCMIG00000014971 #24	ENSCMIG00000014970 #24	PIAS1 (ENSCMIG00000014959) #25	calml4a (ENSCMIG00000014948) #26	cln6a (ENSCMIG00000014944) #27	ENSCMIG00000014942	ENSCMIG00000014940 #29	ITGA11 (ENSCMIG00000014936) #29	CORO2B (ENSCMIG00000014931) #30	anp32a (ENSCMIG00000014929) #31
Cyclostomata	ANCESTRAL SPECIES	115														ENSGT00390000008908 #20	ENSGT00390000015942 #21	ENSGT00940000157505 #22
Hagfish	MODERN SPECIES	1344						ENSEBUG00000013023	ENSEBUG00000003296	ENSEBUG00000008791	fahd1 (ENSEBUG00000008012)	ENSEBUG00000000674	add1 (ENSEBUG00000007480)	ENSEBUG00000007609	mxi1 (ENSEBUG00000013240)	lingo4b (ENSEBUG00000013476)	ENSEBUG00000005777 #21	map2k5 (ENSEBUG00000010214) #22	ENSEBUG00000005618
Lamprey	MODERN SPECIES	1584								gatad2ab (ENSPMAG00000000934)	ARMC6 (ENSPMAG00000000928)	parp16 (ENSPMAG00000000919)	zgc:86811 (ENSPMAG00000000917)	ENSPMAG00000000911	rpl4 (ENSPMAG00000000861) #12	ENSPMAG00000000853 #20	zgc:162898 (ENSPMAG00000000850) #21	ENSPMAG00000000849 #22
Ciona	ANCESTRAL SPECIES	480																ENSGT00940000157505 #22	ENSGT00940000160333	ENSGT00940000171883
Ciona savignyi	MODERN SPECIES	82	ENSCSAVG00000008760	ENSCSAVG00000008481	ENSCSAVG00000008480	ENSCSAVG00000008479	ENSCSAVG00000008478	ENSCSAVG00000008469	ENSCSAVG00000008427	ENSCSAVG00000008424	ENSCSAVG00000008409	ENSCSAVG00000008407	ENSCSAVG00000008405	ENSCSAVG00000008401	ENSCSAVG00000008391	ENSCSAVG00000008389	ENSCSAVG00000008349	ENSCSAVG00000008332 #22	ENSCSAVG00000008329	ENSCSAVG00000008326	ENSCSAVG00000008184	ENSCSAVG00000008069	ENSCSAVG00000008066	ENSCSAVG00000008061	ENSCSAVG00000008058	ENSCSAVG00000008055	ENSCSAVG00000008053	ENSCSAVG00000007760	ENSCSAVG00000007444	ENSCSAVG00000007441	ENSCSAVG00000007438	ENSCSAVG00000007436	ENSCSAVG00000007433
Ciona intestinalis	MODERN SPECIES	2	ENSCING00000020583	ENSCING00000024528	ENSCING00000019211	ENSCING00000024368	ENSCING00000020728	ENSCING00000021097	ENSCING00000018049	ENSCING00000020492	ENSCING00000020685	ENSCING00000023027	ENSCING00000020016	ENSCING00000020921	ENSCING00000017945	ENSCING00000022627	ENSCING00000021526	ENSCING00000019736 #22	ENSCING00000020986	ENSCING00000021659	ENSCING00000018166	ENSCING00000025054	ENSCING00000002753	ENSCING00000018655	ENSCING00000024875	ENSCING00000020475	ENSCING00000018297	ENSCING00000022901	ENSCING00000022717	ENSCING00000020281	ENSCING00000024304	ENSCING00000022560	ENSCING00000022810