Pecora ANCESTRAL SPECIES 2 ENSGT00940000162689 #12 ENSGT00940000160730 #13 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 #14 ENSGT00900000141059 #15 ENSGT00940000155098 #16 ENSGT00940000158642 ENSGT00940000153476.a #17 ENSGT01090000260100.B ENSGT00940000158447 #18 ENSGT00900000143170.a ENSGT00530000063000.a.b.b #19 ENSGT00940000154030.a.a #20 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a #23 ENSGT00950000182944.B.a #24 ENSGT00390000013662 #25 ENSGT00940000163732 ENSGT00510000055442 #26 Percora_a ANCESTRAL SPECIES 1 ENSGT00940000162689 #12 ENSGT00940000160730 #13 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 #14 ENSGT00900000141059 #15 ENSGT00940000155098 #16 ENSGT00940000158642 ENSGT00940000153476.a #17 ENSGT01090000260100.B ENSGT00940000158447 #18 ENSGT00900000143170.a ENSGT00530000063000.a.b.b #19 ENSGT00940000154030.a.a #20 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a #23 ENSGT00950000182944.B.a #24 ENSGT00390000013662 #25 ENSGT00940000163732 ENSGT00510000055442 #26 Bovidae ANCESTRAL SPECIES 1 ENSGT00940000162689 #12 ENSGT00940000160730 #13 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 #14 ENSGT00900000141059 #15 ENSGT00940000155098 #16 ENSGT00940000158642 ENSGT00940000153476.a #17 ENSGT01090000260100.B ENSGT00940000158447 #18 ENSGT00900000143170.a ENSGT00530000063000.a.b.b #19 ENSGT00940000154030.a.a #20 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a #23 ENSGT00950000182944.B.a #24 ENSGT00390000013662 #25 ENSGT00940000163732 ENSGT00510000055442 #26 Caprinae ANCESTRAL SPECIES 2 ENSGT01050000244976.b.b.b.a.a.b #11 ENSGT00940000162689 #12 ENSGT00940000160730 #13 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 #14 ENSGT00900000141059 #15 ENSGT00940000155098 #16 ENSGT00940000158642 ENSGT00940000153476.a #17 ENSGT01090000260100.B ENSGT00940000158447 #18 ENSGT00530000063000.a.b.b #19 ENSGT00940000154030.a.a #20 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a #23 ENSGT00950000182944.B.a #24 ENSGT00390000013662 #25 ENSGT00510000055442 #26 Rambouillet Sheep MODERN SPECIES GPR35 (ENSOARG00020000975) #7 ENSOARG00020000955 #8 KIF1A (ENSOARG00020000824) #9 AGXT (ENSOARG00020000775) #10 MAB21L4 (ENSOARG00020000754) #11 CROCC2 (ENSOARG00020000704) #12 SNED1 (ENSOARG00020000363) #13 ENSOARG00020000194 #14 HDLBP (ENSOARG00020000111) #15 SEPTIN2 (ENSOARG00020000087) #16 STK25 (ENSOARG00020000074) #17 THAP4 (ENSOARG00020000069) #18 ATG4B (ENSOARG00020000066) #19 DTYMK (ENSOARG00020000065) #20 ING5 (ENSOARG00020000064) #21 D2HGDH (ENSOARG00020000060) #22 GAL3ST2 (ENSOARG00020000059) #23 NEU4 (ENSOARG00020000055) #24 ENSOARG00020000053 #25 FAM240C (ENSOARG00020000042) #26 Goat DUPLICATION Goat MODERN SPECIES 126 ENSCHIG00000006670 #22 GAL3ST2 (ENSCHIG00000011341) #23 NEU4 (ENSCHIG00000016718) #24 ENSCHIG00000010033 #25 Goat MODERN SPECIES 22 MAB21L4 (ENSCHIG00000026979) #11 SNED1 (ENSCHIG00000021345) #13 MTERF4 (ENSCHIG00000022070) PASK (ENSCHIG00000007156) ENSCHIG00000012347 #14 HDLBP (ENSCHIG00000022364) #15 SEPTIN2 (ENSCHIG00000026614) #16 FARP2 (ENSCHIG00000027255) STK25 (ENSCHIG00000021875) #17 BOK (ENSCHIG00000026381) ENSCHIG00000014554 THAP4 (ENSCHIG00000020478) #18 ATG4B (ENSCHIG00000018105) #19 DTYMK (ENSCHIG00000024323) #20 ING5 (ENSCHIG00000013163) #21 ENSCHIG00000019983 #22 ENSCHIG00000001465 ENSCHIG00000010191 Bovinae ANCESTRAL SPECIES 1 ENSGT00940000162689 #12 ENSGT00940000160730 #13 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 #14 ENSGT00900000141059 #15 ENSGT00940000155098 #16 ENSGT00940000158642 ENSGT00940000153476.a #17 ENSGT01090000260100.B ENSGT00940000158447 #18 ENSGT00900000143170.a ENSGT00530000063000.a.b.b #19 ENSGT00940000154030.a.a #20 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a #23 ENSGT00950000182944.B.a #24 ENSGT00390000013662 #25 ENSGT00940000163732 ENSGT00510000055442 #26 Bos ANCESTRAL SPECIES ENSGT01050000244976.b.b.b.a.a.b #11 ENSGT00940000162689 #12 ENSGT00940000160730 #13 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 #14 ENSGT00900000141059 #15 ENSGT00940000155098 #16 ENSGT00940000158642 ENSGT00940000153476.a #17 ENSGT01090000260100.B ENSGT00940000158447 #18 ENSGT00530000063000.a.b.b #19 ENSGT00940000154030.a.a #20 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a #23 ENSGT00950000182944.B.a #24 ENSGT00390000013662 #25 ENSGT00940000163732 ENSGT00510000055442 #26 Bos_b ANCESTRAL SPECIES 45 ENSGT01050000244976.b.b.b.a.a.b #11 ENSGT00940000162689 #12 ENSGT00940000160730 #13 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 #14 ENSGT00900000141059 #15 ENSGT00940000155098 #16 ENSGT00940000158642 ENSGT00940000153476.a #17 ENSGT01090000260100.B ENSGT00940000158447 #18 ENSGT00530000063000.a.b.b #19 ENSGT00940000154030.a.a #20 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a #23 ENSGT00950000182944.B.a #24 ENSGT00390000013662 #25 ENSGT00940000163732 ENSGT00510000055442 #26 ENSGT00940000162350.b.b Hybrid Bos Indicus MODERN SPECIES 22 AGXT (ENSBIXG00005019708) #10 MAB21L4 (ENSBIXG00005019680) #11 CROCC2 (ENSBIXG00005019657) #12 SNED1 (ENSBIXG00005019613) #13 PASK (ENSBIXG00005019482) ENSBIXG00005019419 #14 HDLBP (ENSBIXG00005019344) #15 SEPTIN2 (ENSBIXG00005019099) #16 FARP2 (ENSBIXG00005018965) STK25 (ENSBIXG00005018864) #17 BOK (ENSBIXG00005018673) THAP4 (ENSBIXG00005018636) #18 ATG4B (ENSBIXG00005018568) #19 DTYMK (ENSBIXG00005003000) #20 ING5 (ENSBIXG00005018529) #21 D2HGDH (ENSBIXG00005018508) #22 GAL3ST2 (ENSBIXG00005018473) #23 NEU4 (ENSBIXG00005018451) #24 ENSBIXG00005018415 #25 ENSBIXG00005018390 FAM240C (ENSBIXG00005002972) #26 ENSBIXG00005018344 Cow MODERN SPECIES 22 MAB21L4 (ENSBTAG00000012374) #11 CROCC2 (ENSBTAG00000005168) #12 SNED1 (ENSBTAG00000014132) #13 MTERF4 (ENSBTAG00000000784) PASK (ENSBTAG00000000785) PPP1R7 (ENSBTAG00000000789) #14 HDLBP (ENSBTAG00000004315) #15 SEPTIN2 (ENSBTAG00000002608) #16 FARP2 (ENSBTAG00000013110) STK25 (ENSBTAG00000009676) #17 BOK (ENSBTAG00000008711) THAP4 (ENSBTAG00000013253) #18 ATG4B (ENSBTAG00000015401) #19 DTYMK (ENSBTAG00000015408) #20 ING5 (ENSBTAG00000009123) #21 D2HGDH (ENSBTAG00000002847) #22 GAL3ST2 (ENSBTAG00000009093) #23 NEU4 (ENSBTAG00000014833) #24 PDCD1 (ENSBTAG00000011543) #25 RTP5 (ENSBTAG00000040598) ENSBTAG00000054669 ENSBTAG00000030892 Bos_a ANCESTRAL SPECIES 65 ENSGT01050000244976.b.b.b.a.a.b #11 ENSGT00940000162689 #12 ENSGT00940000160730 #13 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 #14 ENSGT00900000141059 #15 ENSGT00940000155098 #16 ENSGT00940000158642 ENSGT00940000153476.a #17 ENSGT01090000260100.B ENSGT00940000158447 #18 ENSGT00530000063000.a.b.b #19 ENSGT00940000154030.a.a #20 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a #23 ENSGT00950000182944.B.a #24 ENSGT00390000013662 #25 ENSGT00940000163732 ENSGT00510000055442 #26 Domestic yak MODERN SPECIES 22 ENSBGRG00000000737 #12 SNED1 (ENSBGRG00000000812) #13 MTERF4 (ENSBGRG00000000960) PASK (ENSBGRG00000001050) PPP1R7 (ENSBGRG00000001494) HDLBP (ENSBGRG00000001532) #15 SEPTIN2 (ENSBGRG00000001628) #16 ENSBGRG00000001659 ENSBGRG00000001709 STK25 (ENSBGRG00000001737) #17 BOK (ENSBGRG00000001796) THAP4 (ENSBGRG00000001809) #18 ATG4B (ENSBGRG00000001839) #19 DTYMK (ENSBGRG00000001869) #20 ING5 (ENSBGRG00000001892) #21 D2HGDH (ENSBGRG00000001912) #22 GAL3ST2 (ENSBGRG00000001946) #23 NEU4 (ENSBGRG00000001960) #24 PDCD1 (ENSBGRG00000001972) #25 ENSBGRG00000002010 ENSBGRG00000002019 FAM240C (ENSBGRG00000002034) #26 ENSBGRG00000002046 Wild yak MODERN SPECIES 1292 MAB21L4 (ENSBMUG00000010834) #11 ENSBMUG00000010864 #12 SNED1 (ENSBMUG00000011079) #13 MTERF4 (ENSBMUG00000011109) PASK (ENSBMUG00000011286) ENSBMUG00000011436 #14 HDLBP (ENSBMUG00000011512) #15 SEPTIN2 (ENSBMUG00000011562) #16 ENSBMUG00000011602 STK25 (ENSBMUG00000011663) #17 BOK (ENSBMUG00000011678) ENSBMUG00000011686 #18 ATG4B (ENSBMUG00000011703) #19 DTYMK (ENSBMUG00000011726) #20 ING5 (ENSBMUG00000011751) #21 D2HGDH (ENSBMUG00000011772) #22 GAL3ST2 (ENSBMUG00000011800) #23 PDCD1 (ENSBMUG00000011821) #25 ENSBMUG00000011839 FAM240C (ENSBMUG00000011856) #26 American bison MODERN SPECIES 2779 HDLBP (ENSBBBG00000025205) #15 SEPTIN2 (ENSBBBG00000024929) #16 ENSBBBG00000007729 ENSBBBG00000024830 ENSBBBG00000006812 #17 STK25 (ENSBBBG00000008224) #17 BOK (ENSBBBG00000007724) ENSBBBG00000008217 #18 ENSBBBG00000006496 ATG4B (ENSBBBG00000024719) #19 DTYMK (ENSBBBG00000024700) #20 ING5 (ENSBBBG00000006484) #21 D2HGDH (ENSBBBG00000000175) #22 Siberian musk deer MODERN SPECIES 1128 MAB21L4 (ENSMMSG00000006074) #11 SNED1 (ENSMMSG00000006119) #13 ENSMMSG00000006267 PASK (ENSMMSG00000006289) ENSMMSG00000006344 #14 HDLBP (ENSMMSG00000006415) #15 ENSMMSG00000006500 #16 FARP2 (ENSMMSG00000006577) STK25 (ENSMMSG00000006751) #17 BOK (ENSMMSG00000006957) THAP4 (ENSMMSG00000007000) #18 ENSMMSG00000007062 ATG4B (ENSMMSG00000007090) #19 DTYMK (ENSMMSG00000007140) #20 ING5 (ENSMMSG00000007156) #21 D2HGDH (ENSMMSG00000007189) #22 GAL3ST2 (ENSMMSG00000007246) #23 NEU4 (ENSMMSG00000007270) #24 PDCD1 (ENSMMSG00000007315) #25 ENSMMSG00000007349 Yarkand deer MODERN SPECIES 12 AGXT (ENSCHYG00000023786) #10 MAB21L4 (ENSCHYG00000023894) #11 SNED1 (ENSCHYG00000024133) #13 PASK (ENSCHYG00000024901) ENSCHYG00000025037 #14 HDLBP (ENSCHYG00000025206) #15 ENSCHYG00000005057 #16 FARP2 (ENSCHYG00000005254) STK25 (ENSCHYG00000005741) #17 ENSCHYG00000005861 THAP4 (ENSCHYG00000005901) #18 ENSCHYG00000005951 ATG4B (ENSCHYG00000005974) #19 DTYMK (ENSCHYG00000005997) #20 ING5 (ENSCHYG00000006024) #21 D2HGDH (ENSCHYG00000006084) #22 GAL3ST2 (ENSCHYG00000006191) #23 NEU4 (ENSCHYG00000006219) #24 PDCD1 (ENSCHYG00000006272) #25 ENSCHYG00000006359 ENSCHYG00000006368