Euarchontoglires_A ANCESTRAL SPECIES 13 ENSGT00940000159035 ENSGT00940000158551.k.b ENSGT00910000148484 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00940000163732 Glires ANCESTRAL SPECIES 14 ENSGT00940000159035 ENSGT00940000158551.k.b ENSGT00910000148484 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00940000163732 Rodentia ANCESTRAL SPECIES 14 ENSGT00940000159035 ENSGT00940000158551.k.b ENSGT00910000148484 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00940000163732 Rodentia_A ANCESTRAL SPECIES 13 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000158551.k.b ENSGT00910000148484 ENSGT00940000162473 ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00940000163732 Sciuridae ANCESTRAL SPECIES 10 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00910000148484 ENSGT00940000162473 ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00940000163732 Marmotini ANCESTRAL SPECIES 2 ENSGT00940000162689 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00910000148484 ENSGT00940000162473 ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00940000163732 ENSGT00940000165655 Marmotini_b ANCESTRAL SPECIES 41 ENSGT01050000244976.b.b.b.a.a.b ENSGT00940000162689 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00940000163732 ENSGT00940000165655 Arctic ground squirrel MODERN SPECIES 972 BOK (ENSUPAG00010003241) #16 THAP4 (ENSUPAG00010003245) #17 ATG4B (ENSUPAG00010003261) #18 DTYMK (ENSUPAG00010003278) #19 ENSUPAG00010003293 #20 ING5 (ENSUPAG00010003300) #21 D2HGDH (ENSUPAG00010003310) #22 Squirrel MODERN SPECIES 345 GPR35 (ENSSTOG00000026086) ENSSTOG00000022231 KIF1A (ENSSTOG00000021868) AGXT (ENSSTOG00000008004) MAB21L4 (ENSSTOG00000006007) SNED1 (ENSSTOG00000031779) ENSSTOG00000016306 HDLBP (ENSSTOG00000013331) SEPTIN2 (ENSSTOG00000013357) FARP2 (ENSSTOG00000022815) STK25 (ENSSTOG00000026742) BOK (ENSSTOG00000028135) #16 THAP4 (ENSSTOG00000015998) #17 ATG4B (ENSSTOG00000014734) #18 ING5 (ENSSTOG00000005977) #21 D2HGDH (ENSSTOG00000023380) #22 PDCD1 (ENSSTOG00000022396) ENSSTOG00000025755 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 8 SNED1 (ENSMMMG00000007168) MTERF4 (ENSMMMG00000007236) ENSMMMG00000007249 ENSMMMG00000007277 ENSMMMG00000007280 HDLBP (ENSMMMG00000007299) SEPTIN2 (ENSMMMG00000007576) ENSMMMG00000007620 ENSMMMG00000007659 STK25 (ENSMMMG00000007681) ENSMMMG00000007706 BOK (ENSMMMG00000007720) #16 THAP4 (ENSMMMG00000007741) #17 ATG4B (ENSMMMG00000007760) #18 DTYMK (ENSMMMG00000007781) #19 D2HGDH (ENSMMMG00000007799) #22 NEU4 (ENSMMMG00000007853) PDCD1 (ENSMMMG00000007868) ENSMMMG00000007882 ENSMMMG00000007896 ENSMMMG00000007913 Alpin marmot MODERN SPECIES 275 ENSMMMG00000007944 #22 Eurasian red squirrel MODERN SPECIES 12 SNED1 (ENSSVLG00005010615) MTERF4 (ENSSVLG00005010874) ENSSVLG00005010962 ENSSVLG00005011084 ENSSVLG00005011132 HDLBP (ENSSVLG00005011227) ENSSVLG00005011546 FARP2 (ENSSVLG00005011791) STK25 (ENSSVLG00005011880) BOK (ENSSVLG00005012052) #16 THAP4 (ENSSVLG00005012097) #17 ENSSVLG00005012212 ATG4B (ENSSVLG00005012261) #18 DTYMK (ENSSVLG00005012417) #19 ING5 (ENSSVLG00005012450) #21 D2HGDH (ENSSVLG00005012513) #22 GAL3ST2 (ENSSVLG00005012622) NEU4 (ENSSVLG00005012671) PDCD1 (ENSSVLG00005012721) ENSSVLG00005012795 PRDM9 (ENSSVLG00005012896) Hystricomorpha ANCESTRAL SPECIES 28 ENSGT00940000162689 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00940000163732 Naked mole-rat female MODERN SPECIES 30 SNED1 (ENSHGLG00000003686) MTERF4 (ENSHGLG00000003898) PASK (ENSHGLG00000004004) PPP1R7 (ENSHGLG00000004117) HDLBP (ENSHGLG00000004910) ENSHGLG00000005291 FARP2 (ENSHGLG00000015024) ENSHGLG00000042172 ENSHGLG00000014130 STK25 (ENSHGLG00000015089) BOK (ENSHGLG00000015101) #16 THAP4 (ENSHGLG00000015125) #17 ATG4B (ENSHGLG00000018630) #18 DTYMK (ENSHGLG00000018717) #19 ING5 (ENSHGLG00000037490) #21 D2HGDH (ENSHGLG00000003119) #22 GAL3ST2 (ENSHGLG00000003311) NEU4 (ENSHGLG00000003691) PDCD1 (ENSHGLG00000032677) ENSHGLG00000004109 ENSHGLG00000038816 ENSHGLG00000000610 ENSHGLG00000041212 TSPYL4 (ENSHGLG00000036673) DSE (ENSHGLG00000041966) CALHM6 (ENSHGLG00000033792) TRAPPC3L (ENSHGLG00000002142) CALHM5 (ENSHGLG00000035655) CALHM4 (ENSHGLG00000002679) ENSHGLG00000002331 ENSHGLG00000019728 Hystricomorpha_a ANCESTRAL SPECIES 32 ENSGT00940000162689 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 Guinea pig MODERN SPECIES 13 SNED1 (ENSCPOG00000006265) MTERF4 (ENSCPOG00000025700) PASK (ENSCPOG00000006277) PPP1R7 (ENSCPOG00000006285) HDLBP (ENSCPOG00000006297) ENSCPOG00000013687 ENSCPOG00000038694 FARP2 (ENSCPOG00000013335) STK25 (ENSCPOG00000022798) ENSCPOG00000025899 BOK (ENSCPOG00000030494) #16 THAP4 (ENSCPOG00000022107) #17 ATG4B (ENSCPOG00000000135) #18 DTYMK (ENSCPOG00000023727) #19 ING5 (ENSCPOG00000038093) #21 D2HGDH (ENSCPOG00000000007) #22 ENSCPOG00000005952 ENSCPOG00000002229 NEU4 (ENSCPOG00000007330) PDCD1 (ENSCPOG00000037292) ENSCPOG00000038878 ENSCPOG00000034749 ENSCPOG00000024854 ENSCPOG00000001586 ENSCPOG00000011923 ENSCPOG00000025453 ENSCPOG00000013424 OR11H4 (ENSCPOG00000011891) ENSCPOG00000007078 PARP2 (ENSCPOG00000022667) CCNB1IP1 (ENSCPOG00000009014) Hystricomorpha_b ANCESTRAL SPECIES 28 ENSGT00940000162689 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00900000141059 ENSGT00940000155098.r ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 Degu MODERN SPECIES 130 CROCC2 (ENSODEG00000013957) SNED1 (ENSODEG00000009052) MTERF4 (ENSODEG00000010009) PASK (ENSODEG00000011073) ENSODEG00000011577 ENSODEG00000012313 ENSODEG00000010316 ENSODEG00000019687 FARP2 (ENSODEG00000010817) STK25 (ENSODEG00000010648) BOK (ENSODEG00000011482) #16 THAP4 (ENSODEG00000010347) #17 ENSODEG00000009790 #18 DTYMK (ENSODEG00000010346) #19 ENSODEG00000011084 #21 D2HGDH (ENSODEG00000010827) #22 GAL3ST2 (ENSODEG00000009766) NEU4 (ENSODEG00000012075) PDCD1 (ENSODEG00000011912) Long-tailed chinchilla MODERN SPECIES 249 CROCC2 (ENSCLAG00000002724) SNED1 (ENSCLAG00000002607) MTERF4 (ENSCLAG00000002565) PASK (ENSCLAG00000002519) ENSCLAG00000002485 HDLBP (ENSCLAG00000002365) ENSCLAG00000002255 FARP2 (ENSCLAG00000002135) STK25 (ENSCLAG00000002040) BOK (ENSCLAG00000002024) #16 ENSCLAG00000002013 THAP4 (ENSCLAG00000002361) #17 ATG4B (ENSCLAG00000002262) #18 DTYMK (ENSCLAG00000002150) #19 ING5 (ENSCLAG00000002116) #21 D2HGDH (ENSCLAG00000001990) #22 GAL3ST2 (ENSCLAG00000001967) NEU4 (ENSCLAG00000001894) PDCD1 (ENSCLAG00000001882) Rodentia_B ANCESTRAL SPECIES 12 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 Myomorpha ANCESTRAL SPECIES 10 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 Muroidea ANCESTRAL SPECIES 20 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059 ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 Muroidea_A ANCESTRAL SPECIES 19 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059.z ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00730000111385 ENSGT01030000234535.F.b ENSGT01080000257410.D.c ENSGT01080000257410.D.d.b ENSGT00940000156369 ENSGT00940000160670 ENSGT00390000009048.a.b ENSGT00390000005782 ENSGT00530000064469 ENSGT00940000157592 ENSGT00940000157299 ENSGT00940000156973 Cricetidae ANCESTRAL SPECIES 19 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.b ENSGT00940000158551.k.a ENSGT00900000141059.z ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00730000111385 ENSGT01030000234535.F.b ENSGT01080000257410.D.c ENSGT01080000257410.D.d.a ENSGT00940000156369 ENSGT00940000160670 ENSGT00390000009048.a.b ENSGT00390000005782 ENSGT00530000064469 ENSGT00940000157592 ENSGT00940000157299 ENSGT00940000156973 Cricetinae ANCESTRAL SPECIES 3 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000158551.k.b ENSGT00940000158551.k.a ENSGT00900000141059.z ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00730000111385 ENSGT01030000234535.F.b ENSGT01080000257410.D.c ENSGT00940000156369 ENSGT00940000160670 ENSGT00390000009048.a.b ENSGT00390000005782 ENSGT00530000064469 ENSGT00940000157592 ENSGT00940000157299 ENSGT00940000156973 ENSGT00940000154997 Chinese hamster chok1gshd MODERN SPECIES 1 Sned1 (ENSCGRG00001002826) Mterf4 (ENSCGRG00001006818) Pask (ENSCGRG00001024785) ENSCGRG00001001852 Ano7 (ENSCGRG00001006513) Hdlbp (ENSCGRG00001006086) ENSCGRG00001009996 Farp2 (ENSCGRG00001003923) Stk25 (ENSCGRG00001005671) Bok (ENSCGRG00001024808) #16 Thap4 (ENSCGRG00001002632) #17 ENSCGRG00001006751 Atg4b (ENSCGRG00001001760) #18 Dtymk (ENSCGRG00001000666) #19 Ing5 (ENSCGRG00001004863) #21 D2hgdh (ENSCGRG00001002513) #22 ENSCGRG00001000728 Neu4 (ENSCGRG00001009931) Pdcd1 (ENSCGRG00001002477) Fam174a (ENSCGRG00001002695) ENSCGRG00001010345 St8sia4 (ENSCGRG00001004612) ENSCGRG00001004644 ENSCGRG00001003799 Slco4c1 (ENSCGRG00001010874) ENSCGRG00001010780 Pam (ENSCGRG00001011006) Gin1 (ENSCGRG00001004458) Ppip5k2 (ENSCGRG00001002274) Macir (ENSCGRG00001009855) ENSCGRG00001003228 Golden Hamster MODERN SPECIES 686 Sned1 (ENSMAUG00000017367) Mterf4 (ENSMAUG00000000081) Pask (ENSMAUG00000018648) ENSMAUG00000013558 Ano7 (ENSMAUG00000013132) Hdlbp (ENSMAUG00000017743) ENSMAUG00000011950 Farp2 (ENSMAUG00000013770) Stk25 (ENSMAUG00000009418) Bok (ENSMAUG00000011149) #16 ENSMAUG00000009008 #17 Atg4b (ENSMAUG00000002031) #18 Dtymk (ENSMAUG00000000268) #19 ENSMAUG00000012792 #19 Ing5 (ENSMAUG00000010995) #21 D2hgdh (ENSMAUG00000008991) #22 ENSMAUG00000006662 ENSMAUG00000018549 Neu4 (ENSMAUG00000004468) Pdcd1 (ENSMAUG00000000914) Fam174a (ENSMAUG00000010921) St8sia4 (ENSMAUG00000008068) Slco4c1 (ENSMAUG00000016086) ENSMAUG00000016737 Pam (ENSMAUG00000013243) Gin1 (ENSMAUG00000014864) Macir (ENSMAUG00000013352) ENSMAUG00000018117 Nudt12 (ENSMAUG00000010818) Efna5 (ENSMAUG00000016198) ENSMAUG00000012566 Cricetidae_B ANCESTRAL SPECIES 20 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059.z ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00730000111385 ENSGT01030000234535.F.b ENSGT01080000257410.D.c ENSGT01080000257410.D.d.a ENSGT00940000156369 ENSGT00940000160670 ENSGT00390000009048.a.b ENSGT00390000005782 ENSGT00530000064469 ENSGT00940000157592 ENSGT00940000157299 ENSGT00940000156973 Prairie vole MODERN SPECIES 354 Sned1 (ENSMOCG00000002594) Mterf4 (ENSMOCG00000010203) Pask (ENSMOCG00000016982) ENSMOCG00000012798 Ano7 (ENSMOCG00000000907) Hdlbp (ENSMOCG00000006679) ENSMOCG00000014906 Farp2 (ENSMOCG00000021782) Stk25 (ENSMOCG00000017547) Bok (ENSMOCG00000016270) #16 ENSMOCG00000014492 #17 Atg4b (ENSMOCG00000013012) #18 Dtymk (ENSMOCG00000006228) #19 ENSMOCG00000005204 #19 Ing5 (ENSMOCG00000014178) #21 D2hgdh (ENSMOCG00000020154) #22 ENSMOCG00000007726 Neu4 (ENSMOCG00000016739) Pdcd1 (ENSMOCG00000014895) ENSMOCG00000003363 Fam174a (ENSMOCG00000015018) St8sia4 (ENSMOCG00000013060) ENSMOCG00000009291 ENSMOCG00000006288 Slco4c1 (ENSMOCG00000004368) ENSMOCG00000018358 ENSMOCG00000006301 Pam (ENSMOCG00000012283) Gin1 (ENSMOCG00000021884) Ppip5k2 (ENSMOCG00000020966) Macir (ENSMOCG00000018727) Northern American deer mouse MODERN SPECIES 4 Sned1 (ENSPEMG00000008505) Mterf4 (ENSPEMG00000026952) Pask (ENSPEMG00000022938) Ppp1r7 (ENSPEMG00000001859) Ano7 (ENSPEMG00000011761) Hdlbp (ENSPEMG00000017704) ENSPEMG00000022937 Farp2 (ENSPEMG00000023787) Stk25 (ENSPEMG00000023590) Bok (ENSPEMG00000023399) #16 Thap4 (ENSPEMG00000022638) #17 ENSPEMG00000002288 Atg4b (ENSPEMG00000023843) #18 Dtymk (ENSPEMG00000023813) #19 Ing5 (ENSPEMG00000021508) #21 D2hgdh (ENSPEMG00000021435) #22 ENSPEMG00000013727 Neu4 (ENSPEMG00000022695) Pdcd1 (ENSPEMG00000010110) ENSPEMG00000028919 ENSPEMG00000001999 ENSPEMG00000013367 Fam174a (ENSPEMG00000023963) St8sia4 (ENSPEMG00000025143) Slco4c1 (ENSPEMG00000020395) ENSPEMG00000030212 ENSPEMG00000017201 ENSPEMG00000014680 Pam (ENSPEMG00000008719) Gin1 (ENSPEMG00000028100) Ppip5k2 (ENSPEMG00000010567) Murinae ANCESTRAL SPECIES 9 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059.z ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00730000111385 ENSGT01030000234535.F.b ENSGT01080000257410.D.c ENSGT01080000257410.D.d.b.b ENSGT01080000257410.D.d.b.a ENSGT00940000156369 ENSGT00940000160670 ENSGT00390000009048.a.b ENSGT00390000005782 ENSGT00530000064469 ENSGT00940000157592 ENSGT00940000157299 Mus ANCESTRAL SPECIES 5 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059.z ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00730000111385 ENSGT01030000234535.F.b ENSGT01080000257410.D.c ENSGT01080000257410.D.d.b.b ENSGT00390000005782 ENSGT00390000009048.a.b ENSGT00940000160670 ENSGT00940000156369 ENSGT01080000257410.D.d.b.a ENSGT00940000158167 ENSGT00730000111317 ENSGT00390000017600 Mus_A ANCESTRAL SPECIES 5 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059.z ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00730000111385 ENSGT01030000234535.F.b ENSGT01080000257410.D.c ENSGT01080000257410.D.d.b.b ENSGT00390000005782 ENSGT00390000009048.a.b ENSGT00940000160670 ENSGT00940000156369 ENSGT01080000257410.D.d.b.a ENSGT00940000164023.c.b ENSGT00940000158167 ENSGT00730000111317 Mus_B ANCESTRAL SPECIES 7 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059.z ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a.bb ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00730000111385 ENSGT01030000234535.F.b ENSGT01080000257410.D.c ENSGT01080000257410.D.d.b.b ENSGT00390000005782 ENSGT00390000009048.a.b ENSGT00940000160670 ENSGT00940000156369 ENSGT01080000257410.D.d.b.a ENSGT00940000164023.c.b ENSGT00940000158167 ENSGT00730000111317 Mouse MODERN SPECIES Sned1 (ENSMUSG00000047793) Mterf4 (ENSMUSG00000026273) Pask (ENSMUSG00000026274) Ppp1r7 (ENSMUSG00000026275) Ano7 (ENSMUSG00000034107) Hdlbp (ENSMUSG00000034088) Septin2 (ENSMUSG00000026276) Septin2 (ENSMUSG00000116048) Farp2 (ENSMUSG00000034066) Stk25 (ENSMUSG00000026277) Bok (ENSMUSG00000026278) #16 Thap4 (ENSMUSG00000026279) #17 Atg4b (ENSMUSG00000026280) #18 Dtymk (ENSMUSG00000026281) #19 Ing5 (ENSMUSG00000026283) #21 D2hgdh (ENSMUSG00000073609) #22 Gal3st2 (ENSMUSG00000094651) Gal3st2b (ENSMUSG00000093805) Gal3st2c (ENSMUSG00000073608) Neu4 (ENSMUSG00000034000) Pdcd1 (ENSMUSG00000026285) Fam174a (ENSMUSG00000051185) St8sia4 (ENSMUSG00000040710) Slco4c1 (ENSMUSG00000040693) Slco6c1 (ENSMUSG00000026331) Macir (ENSMUSG00000044768) Ppip5k2 (ENSMUSG00000040648) Gin1 (ENSMUSG00000026333) Pam (ENSMUSG00000026335) Slco6d1 (ENSMUSG00000026336) Cntnap5b (ENSMUSG00000067028) Mus_C ANCESTRAL SPECIES 1 ENSGT00940000160730 ENSGT00460000041648 ENSGT00940000159035 ENSGT00940000162473 ENSGT00940000158551.k.a ENSGT00900000141059.z ENSGT00940000155098 ENSGT00940000158642 ENSGT00940000153476.a ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT01050000247607 ENSGT00950000182923.B.a.bb ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00730000111385 ENSGT01030000234535.F.b ENSGT01080000257410.D.c ENSGT01080000257410.D.d.b.b ENSGT00390000005782 ENSGT00390000009048.a.b ENSGT00940000160670 ENSGT00940000156369 ENSGT01080000257410.D.d.b.a ENSGT00940000164023.c.b ENSGT00940000158167 spretus MODERN SPECIES Crocc2 (MGP_SPRETEiJ_G0015254) Sned1 (MGP_SPRETEiJ_G0015255) Mterf4 (MGP_SPRETEiJ_G0015256) Pask (MGP_SPRETEiJ_G0015257) Ppp1r7 (MGP_SPRETEiJ_G0015258) Ano7 (MGP_SPRETEiJ_G0015259) Hdlbp (MGP_SPRETEiJ_G0015260) MGP_SPRETEiJ_G0015261 Farp2 (MGP_SPRETEiJ_G0015262) Stk25 (MGP_SPRETEiJ_G0015263) Bok (MGP_SPRETEiJ_G0015264) #16 Thap4 (MGP_SPRETEiJ_G0015265) #17 Atg4b (MGP_SPRETEiJ_G0015266) #18 Dtymk (MGP_SPRETEiJ_G0015267) #19 Ing5 (MGP_SPRETEiJ_G0015268) #21 D2hgdh (MGP_SPRETEiJ_G0015269) #22 MGP_SPRETEiJ_G0015270 MGP_SPRETEiJ_G0015271 MGP_SPRETEiJ_G0015272 Neu4 (MGP_SPRETEiJ_G0015273) Pdcd1 (MGP_SPRETEiJ_G0015274) Fam174a (MGP_SPRETEiJ_G0015275) St8sia4 (MGP_SPRETEiJ_G0015276) Slco4c1 (MGP_SPRETEiJ_G0015277) MGP_SPRETEiJ_G0015278 Macir (MGP_SPRETEiJ_G0015279) Ppip5k2 (MGP_SPRETEiJ_G0015280) Gin1 (MGP_SPRETEiJ_G0015281) Pam (MGP_SPRETEiJ_G0015282) MGP_SPRETEiJ_G0015283 Cntnap5b (MGP_SPRETEiJ_G0015284) Steppe mouse MODERN SPECIES 2151 ENSMSIG00000015660 ENSMSIG00000015638 Bok (ENSMSIG00000015629) #16 ENSMSIG00000015626 Thap4 (ENSMSIG00000015596) #17 Atg4b (ENSMSIG00000015526) #18 Dtymk (ENSMSIG00000015486) #19 Ing5 (ENSMSIG00000015435) #21 ENSMSIG00000015376 #22 Ryukyu mouse MODERN SPECIES Crocc2 (MGP_CAROLIEiJ_G0014450) Sned1 (MGP_CAROLIEiJ_G0014451) Mterf4 (MGP_CAROLIEiJ_G0014452) Pask (MGP_CAROLIEiJ_G0014453) Ppp1r7 (MGP_CAROLIEiJ_G0014454) Ano7 (MGP_CAROLIEiJ_G0014455) Hdlbp (MGP_CAROLIEiJ_G0014456) MGP_CAROLIEiJ_G0014457 Farp2 (MGP_CAROLIEiJ_G0014458) Stk25 (MGP_CAROLIEiJ_G0014459) Bok (MGP_CAROLIEiJ_G0014460) #16 Thap4 (MGP_CAROLIEiJ_G0014461) #17 Atg4b (MGP_CAROLIEiJ_G0014462) #18 Dtymk (MGP_CAROLIEiJ_G0014463) #19 Ing5 (MGP_CAROLIEiJ_G0014464) #21 D2hgdh (MGP_CAROLIEiJ_G0014465) #22 MGP_CAROLIEiJ_G0014466 MGP_CAROLIEiJ_G0014467 MGP_CAROLIEiJ_G0014468 Neu4 (MGP_CAROLIEiJ_G0014469) Pdcd1 (MGP_CAROLIEiJ_G0014470) Fam174a (MGP_CAROLIEiJ_G0014471) St8sia4 (MGP_CAROLIEiJ_G0014472) Slco4c1 (MGP_CAROLIEiJ_G0014473) Slco6c1 (MGP_CAROLIEiJ_G0014474) Macir (MGP_CAROLIEiJ_G0014475) Ppip5k2 (MGP_CAROLIEiJ_G0014476) Gin1 (MGP_CAROLIEiJ_G0014477) Pam (MGP_CAROLIEiJ_G0014478) MGP_CAROLIEiJ_G0014479 Cntnap5b (MGP_CAROLIEiJ_G0014480) Shrew mouse MODERN SPECIES 18 Crocc2 (MGP_PahariEiJ_G0027686) Sned1 (MGP_PahariEiJ_G0027687) Mterf4 (MGP_PahariEiJ_G0027688) Pask (MGP_PahariEiJ_G0027689) Ppp1r7 (MGP_PahariEiJ_G0027690) Ano7 (MGP_PahariEiJ_G0027691) Hdlbp (MGP_PahariEiJ_G0027692) MGP_PahariEiJ_G0027693 Farp2 (MGP_PahariEiJ_G0027694) Stk25 (MGP_PahariEiJ_G0027695) Bok (MGP_PahariEiJ_G0027696) #16 Thap4 (MGP_PahariEiJ_G0027697) #17 Atg4b (MGP_PahariEiJ_G0027698) #18 Dtymk (MGP_PahariEiJ_G0027699) #19 Ing5 (MGP_PahariEiJ_G0027700) #21 D2hgdh (MGP_PahariEiJ_G0027701) #22 MGP_PahariEiJ_G0027702 MGP_PahariEiJ_G0027703 MGP_PahariEiJ_G0027704 Neu4 (MGP_PahariEiJ_G0027705) Pdcd1 (MGP_PahariEiJ_G0027706) Fam174a (MGP_PahariEiJ_G0027707) St8sia4 (MGP_PahariEiJ_G0027708) Slco4c1 (MGP_PahariEiJ_G0027709) MGP_PahariEiJ_G0027710 Macir (MGP_PahariEiJ_G0027711) Ppip5k2 (MGP_PahariEiJ_G0027712) Gin1 (MGP_PahariEiJ_G0027713) Pam (MGP_PahariEiJ_G0027714) Cdh20 (MGP_PahariEiJ_G0027715) Rnf152 (MGP_PahariEiJ_G0027716) Rat MODERN SPECIES 19 Pask (ENSRNOG00000016888) LOC102549694 (ENSRNOG00000066227) AABR07068351.1 (ENSRNOG00000016974) Ano7 (ENSRNOG00000023427) Hdlbp (ENSRNOG00000031479) Septin2 (ENSRNOG00000017952) LOC100362040 (ENSRNOG00000030738) Farp2 (ENSRNOG00000018051) Stk25 (ENSRNOG00000018181) Bok (ENSRNOG00000018214) #16 Thap4 (ENSRNOG00000018351) #17 AC109427.1 (ENSRNOG00000056259) Atg4b (ENSRNOG00000018403) #18 Dtymk (ENSRNOG00000018904) #19 Ing5 (ENSRNOG00000018988) #21 D2hgdh (ENSRNOG00000019012) #22 Gal3st2c (ENSRNOG00000070509) Neu4 (ENSRNOG00000019031) Pdcd1 (ENSRNOG00000019043) Chchd2l3 (ENSRNOG00000051180) Fam174a (ENSRNOG00000019087) ENSRNOG00000062997 St8sia4 (ENSRNOG00000019128) Slco4c1 (ENSRNOG00000022711) Slco6b1 (ENSRNOG00000019252) AABR07068417.1 (ENSRNOG00000025797) Slco6c1 (ENSRNOG00000013792) Slco6d1 (ENSRNOG00000031146) Pam (ENSRNOG00000033280) Gin1 (ENSRNOG00000011962) Ppip5k2 (ENSRNOG00000011613) Upper Galilee mountains blind mole rat MODERN SPECIES 634 Crocc2 (ENSNGAG00000021519) Sned1 (ENSNGAG00000023743) Mterf4 (ENSNGAG00000023724) Pask (ENSNGAG00000007549) ENSNGAG00000017337 Ano7 (ENSNGAG00000022445) Hdlbp (ENSNGAG00000014873) ENSNGAG00000022412 Farp2 (ENSNGAG00000004760) Stk25 (ENSNGAG00000001501) Bok (ENSNGAG00000023762) #16 Thap4 (ENSNGAG00000024010) #17 Atg4b (ENSNGAG00000018585) #18 Dtymk (ENSNGAG00000021440) #19 Ing5 (ENSNGAG00000023305) #21 D2hgdh (ENSNGAG00000023831) #22 Neu4 (ENSNGAG00000017190) Pdcd1 (ENSNGAG00000019405) Lesser Egyptian jerboa MODERN SPECIES 146 Crocc2 (ENSJJAG00000005843) Sned1 (ENSJJAG00000012102) Mterf4 (ENSJJAG00000000477) Pask (ENSJJAG00000020114) Ppp1r7 (ENSJJAG00000018768) Hdlbp (ENSJJAG00000003596) ENSJJAG00000019868 Farp2 (ENSJJAG00000011289) Stk25 (ENSJJAG00000000845) Bok (ENSJJAG00000022455) #16 Thap4 (ENSJJAG00000022829) #17 ENSJJAG00000019840 #18 ENSJJAG00000020306 #18 Dtymk (ENSJJAG00000016941) #19 Ing5 (ENSJJAG00000016649) #21 D2hgdh (ENSJJAG00000009431) #22 Neu4 (ENSJJAG00000003148) Kangaroo rat MODERN SPECIES 492 Mterf4 (ENSDORG00000028393) Pask (ENSDORG00000004572) Ppp1r7 (ENSDORG00000029280) ENSDORG00000011305 ENSDORG00000028840 ENSDORG00000000106 ENSDORG00000026265 Stk25 (ENSDORG00000000110) Bok (ENSDORG00000027572) #16 ENSDORG00000023457 Thap4 (ENSDORG00000027598) #17 ENSDORG00000027774 #18 ENSDORG00000016601 #18 Dtymk (ENSDORG00000016603) #19 Ing5 (ENSDORG00000024121) #21 D2hgdh (ENSDORG00000004814) #22 ENSDORG00000015026 Pdcd1 (ENSDORG00000029674) ENSDORG00000004666 Lagomorpha ANCESTRAL SPECIES 239 ENSGT01090000260100.B #16 ENSGT00940000158447 #17 ENSGT00900000143170 ENSGT00530000063000.a.b.b #18 ENSGT00940000154030.a.a #19 ENSGT00940000158159 #21 ENSGT00550000075086 #22 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT00390000013662 ENSGT00940000163732 Rabbit MODERN SPECIES 761 ENSOCUG00000021536 #16 THAP4 (ENSOCUG00000011164) #17 ENSOCUG00000032757 ATG4B (ENSOCUG00000021604) #18 DTYMK (ENSOCUG00000005955) #19 ING5 (ENSOCUG00000024916) #21 D2HGDH (ENSOCUG00000022982) #22 GAL3ST2 (ENSOCUG00000004955) ENSOCUG00000021920 ENSOCUG00000008079 ENSOCUG00000024447 Pika MODERN SPECIES 3168 ENSOPRG00000015309 #22 GAL3ST2 (ENSOPRG00000015320)