Murinae	ANCESTRAL SPECIES	9	ENSGT00940000160730	ENSGT00460000041648	ENSGT00940000159035 #7	ENSGT00940000162473	ENSGT00940000158551.k.a #10	ENSGT00900000141059.z #11	ENSGT00940000155098 #12	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #27	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #33	ENSGT01080000257410.D.d.b.a #34	ENSGT00940000156369 #35	ENSGT00940000160670 #36	ENSGT00390000009048.a.b #37	ENSGT00390000005782	ENSGT00530000064469	ENSGT00940000157592	ENSGT00940000157299
Rat	MODERN SPECIES	19	Pask (ENSRNOG00000016888) #7	LOC102549694 (ENSRNOG00000066227) #8	AABR07068351.1 (ENSRNOG00000016974) #9	Ano7 (ENSRNOG00000023427) #10	Hdlbp (ENSRNOG00000031479) #11	Septin2 (ENSRNOG00000017952) #12	LOC100362040 (ENSRNOG00000030738) #13	Farp2 (ENSRNOG00000018051) #14	Stk25 (ENSRNOG00000018181) #15	Bok (ENSRNOG00000018214) #16	Thap4 (ENSRNOG00000018351) #17	AC109427.1 (ENSRNOG00000056259) #18	Atg4b (ENSRNOG00000018403) #19	Dtymk (ENSRNOG00000018904) #20	Ing5 (ENSRNOG00000018988) #21	D2hgdh (ENSRNOG00000019012) #22	Gal3st2c (ENSRNOG00000070509) #23	Neu4 (ENSRNOG00000019031) #24	Pdcd1 (ENSRNOG00000019043) #25	Chchd2l3 (ENSRNOG00000051180) #26	Fam174a (ENSRNOG00000019087) #27	ENSRNOG00000062997 #28	St8sia4 (ENSRNOG00000019128) #29	Slco4c1 (ENSRNOG00000022711) #30	Slco6b1 (ENSRNOG00000019252) #31	AABR07068417.1 (ENSRNOG00000025797) #32	Slco6c1 (ENSRNOG00000013792) #33	Slco6d1 (ENSRNOG00000031146) #34	Pam (ENSRNOG00000033280) #35	Gin1 (ENSRNOG00000011962) #36	Ppip5k2 (ENSRNOG00000011613) #37
Mus	ANCESTRAL SPECIES	5	ENSGT00940000160730	ENSGT00460000041648	ENSGT00940000159035 #7	ENSGT00940000162473	ENSGT00940000158551.k.a #10	ENSGT00900000141059.z #11	ENSGT00940000155098 #12	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #27	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #33	ENSGT00390000005782	ENSGT00390000009048.a.b #37	ENSGT00940000160670 #36	ENSGT00940000156369 #35	ENSGT01080000257410.D.d.b.a #34	ENSGT00940000158167	ENSGT00730000111317	ENSGT00390000017600
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000160730	ENSGT00460000041648	ENSGT00940000159035 #7	ENSGT00940000162473	ENSGT00940000158551.k.a #10	ENSGT00900000141059.z #11	ENSGT00940000155098 #12	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #27	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #33	ENSGT00390000005782	ENSGT00390000009048.a.b #37	ENSGT00940000160670 #36	ENSGT00940000156369 #35	ENSGT01080000257410.D.d.b.a #34	ENSGT00940000164023.c.b	ENSGT00940000158167	ENSGT00730000111317
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000160730	ENSGT00460000041648	ENSGT00940000159035 #7	ENSGT00940000162473	ENSGT00940000158551.k.a #10	ENSGT00900000141059.z #11	ENSGT00940000155098 #12	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a.bb #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #27	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #33	ENSGT00390000005782	ENSGT00390000009048.a.b #37	ENSGT00940000160670 #36	ENSGT00940000156369 #35	ENSGT01080000257410.D.d.b.a #34	ENSGT00940000164023.c.b	ENSGT00940000158167	ENSGT00730000111317
Mouse	MODERN SPECIES		Sned1 (ENSMUSG00000047793)	Mterf4 (ENSMUSG00000026273)	Pask (ENSMUSG00000026274) #7	Ppp1r7 (ENSMUSG00000026275)	Ano7 (ENSMUSG00000034107) #10	Hdlbp (ENSMUSG00000034088) #11	Septin2 (ENSMUSG00000026276) #12	Septin2 (ENSMUSG00000116048) #12	Farp2 (ENSMUSG00000034066) #14	Stk25 (ENSMUSG00000026277) #15	Bok (ENSMUSG00000026278) #16	Thap4 (ENSMUSG00000026279) #17	Atg4b (ENSMUSG00000026280) #19	Dtymk (ENSMUSG00000026281) #20	Ing5 (ENSMUSG00000026283) #21	D2hgdh (ENSMUSG00000073609) #22	Gal3st2 (ENSMUSG00000094651) #23	Gal3st2b (ENSMUSG00000093805) #23	Gal3st2c (ENSMUSG00000073608) #23	Neu4 (ENSMUSG00000034000) #24	Pdcd1 (ENSMUSG00000026285) #25	Fam174a (ENSMUSG00000051185) #27	St8sia4 (ENSMUSG00000040710) #29	Slco4c1 (ENSMUSG00000040693) #30	Slco6c1 (ENSMUSG00000026331) #33	Macir (ENSMUSG00000044768)	Ppip5k2 (ENSMUSG00000040648) #37	Gin1 (ENSMUSG00000026333) #36	Pam (ENSMUSG00000026335) #35	Slco6d1 (ENSMUSG00000026336) #34	Cntnap5b (ENSMUSG00000067028)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000160730	ENSGT00460000041648	ENSGT00940000159035 #7	ENSGT00940000162473	ENSGT00940000158551.k.a #10	ENSGT00900000141059.z #11	ENSGT00940000155098 #12	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT01050000247607	ENSGT00950000182923.B.a.bb #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #27	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #33	ENSGT00390000005782	ENSGT00390000009048.a.b #37	ENSGT00940000160670 #36	ENSGT00940000156369 #35	ENSGT01080000257410.D.d.b.a #34	ENSGT00940000164023.c.b	ENSGT00940000158167
spretus	MODERN SPECIES		Crocc2 (MGP_SPRETEiJ_G0015254)	Sned1 (MGP_SPRETEiJ_G0015255)	Mterf4 (MGP_SPRETEiJ_G0015256)	Pask (MGP_SPRETEiJ_G0015257) #7	Ppp1r7 (MGP_SPRETEiJ_G0015258)	Ano7 (MGP_SPRETEiJ_G0015259) #10	Hdlbp (MGP_SPRETEiJ_G0015260) #11	MGP_SPRETEiJ_G0015261 #12	Farp2 (MGP_SPRETEiJ_G0015262) #14	Stk25 (MGP_SPRETEiJ_G0015263) #15	Bok (MGP_SPRETEiJ_G0015264) #16	Thap4 (MGP_SPRETEiJ_G0015265) #17	Atg4b (MGP_SPRETEiJ_G0015266) #19	Dtymk (MGP_SPRETEiJ_G0015267) #20	Ing5 (MGP_SPRETEiJ_G0015268) #21	D2hgdh (MGP_SPRETEiJ_G0015269) #22	MGP_SPRETEiJ_G0015270	MGP_SPRETEiJ_G0015271 #23	MGP_SPRETEiJ_G0015272 #23	Neu4 (MGP_SPRETEiJ_G0015273) #24	Pdcd1 (MGP_SPRETEiJ_G0015274) #25	Fam174a (MGP_SPRETEiJ_G0015275) #27	St8sia4 (MGP_SPRETEiJ_G0015276) #29	Slco4c1 (MGP_SPRETEiJ_G0015277) #30	MGP_SPRETEiJ_G0015278 #33	Macir (MGP_SPRETEiJ_G0015279)	Ppip5k2 (MGP_SPRETEiJ_G0015280) #37	Gin1 (MGP_SPRETEiJ_G0015281) #36	Pam (MGP_SPRETEiJ_G0015282) #35	MGP_SPRETEiJ_G0015283 #34	Cntnap5b (MGP_SPRETEiJ_G0015284)
Steppe mouse	MODERN SPECIES	2151								ENSMSIG00000015660 #14	ENSMSIG00000015638 #15	Bok (ENSMSIG00000015629) #16	ENSMSIG00000015626 #18	Thap4 (ENSMSIG00000015596) #17	Atg4b (ENSMSIG00000015526) #19	Dtymk (ENSMSIG00000015486) #20	Ing5 (ENSMSIG00000015435) #21	ENSMSIG00000015376 #22
Ryukyu mouse	MODERN SPECIES		Crocc2 (MGP_CAROLIEiJ_G0014450)	Sned1 (MGP_CAROLIEiJ_G0014451)	Mterf4 (MGP_CAROLIEiJ_G0014452)	Pask (MGP_CAROLIEiJ_G0014453) #7	Ppp1r7 (MGP_CAROLIEiJ_G0014454)	Ano7 (MGP_CAROLIEiJ_G0014455) #10	Hdlbp (MGP_CAROLIEiJ_G0014456) #11	MGP_CAROLIEiJ_G0014457 #12	Farp2 (MGP_CAROLIEiJ_G0014458) #14	Stk25 (MGP_CAROLIEiJ_G0014459) #15	Bok (MGP_CAROLIEiJ_G0014460) #16	Thap4 (MGP_CAROLIEiJ_G0014461) #17	Atg4b (MGP_CAROLIEiJ_G0014462) #19	Dtymk (MGP_CAROLIEiJ_G0014463) #20	Ing5 (MGP_CAROLIEiJ_G0014464) #21	D2hgdh (MGP_CAROLIEiJ_G0014465) #22	MGP_CAROLIEiJ_G0014466 #23	MGP_CAROLIEiJ_G0014467 #23	MGP_CAROLIEiJ_G0014468 #23	Neu4 (MGP_CAROLIEiJ_G0014469) #24	Pdcd1 (MGP_CAROLIEiJ_G0014470) #25	Fam174a (MGP_CAROLIEiJ_G0014471) #27	St8sia4 (MGP_CAROLIEiJ_G0014472) #29	Slco4c1 (MGP_CAROLIEiJ_G0014473) #30	Slco6c1 (MGP_CAROLIEiJ_G0014474) #33	Macir (MGP_CAROLIEiJ_G0014475)	Ppip5k2 (MGP_CAROLIEiJ_G0014476) #37	Gin1 (MGP_CAROLIEiJ_G0014477) #36	Pam (MGP_CAROLIEiJ_G0014478) #35	MGP_CAROLIEiJ_G0014479 #34	Cntnap5b (MGP_CAROLIEiJ_G0014480)
Shrew mouse	MODERN SPECIES	18	Crocc2 (MGP_PahariEiJ_G0027686)	Sned1 (MGP_PahariEiJ_G0027687)	Mterf4 (MGP_PahariEiJ_G0027688)	Pask (MGP_PahariEiJ_G0027689) #7	Ppp1r7 (MGP_PahariEiJ_G0027690)	Ano7 (MGP_PahariEiJ_G0027691) #10	Hdlbp (MGP_PahariEiJ_G0027692) #11	MGP_PahariEiJ_G0027693 #12	Farp2 (MGP_PahariEiJ_G0027694) #14	Stk25 (MGP_PahariEiJ_G0027695) #15	Bok (MGP_PahariEiJ_G0027696) #16	Thap4 (MGP_PahariEiJ_G0027697) #17	Atg4b (MGP_PahariEiJ_G0027698) #19	Dtymk (MGP_PahariEiJ_G0027699) #20	Ing5 (MGP_PahariEiJ_G0027700) #21	D2hgdh (MGP_PahariEiJ_G0027701) #22	MGP_PahariEiJ_G0027702 #23	MGP_PahariEiJ_G0027703 #23	MGP_PahariEiJ_G0027704 #23	Neu4 (MGP_PahariEiJ_G0027705) #24	Pdcd1 (MGP_PahariEiJ_G0027706) #25	Fam174a (MGP_PahariEiJ_G0027707) #27	St8sia4 (MGP_PahariEiJ_G0027708) #29	Slco4c1 (MGP_PahariEiJ_G0027709) #30	MGP_PahariEiJ_G0027710 #33	Macir (MGP_PahariEiJ_G0027711)	Ppip5k2 (MGP_PahariEiJ_G0027712) #37	Gin1 (MGP_PahariEiJ_G0027713) #36	Pam (MGP_PahariEiJ_G0027714) #35	Cdh20 (MGP_PahariEiJ_G0027715)	Rnf152 (MGP_PahariEiJ_G0027716)