Murinae	ANCESTRAL SPECIES	9	ENSGT00940000160730 #8	ENSGT00460000041648 #9	ENSGT00940000159035 #10	ENSGT00940000162473 #11	ENSGT00940000158551.k.a #12	ENSGT00900000141059.z #13	ENSGT00940000155098 #14	ENSGT00940000158642 #15	ENSGT00940000153476.a #16	ENSGT01090000260100.B #17	ENSGT00940000158447 #18	ENSGT00900000143170	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #25	ENSGT00950000182944.B.a #26	ENSGT00390000013662 #27	ENSGT00730000111385 #28	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #31	ENSGT01080000257410.D.d.b.a #36	ENSGT00940000156369 #35	ENSGT00940000160670 #34	ENSGT00390000009048.a.b #33	ENSGT00390000005782 #32	ENSGT00530000064469	ENSGT00940000157592	ENSGT00940000157299
Mus	ANCESTRAL SPECIES	5	ENSGT00940000160730 #8	ENSGT00460000041648 #9	ENSGT00940000159035 #10	ENSGT00940000162473 #11	ENSGT00940000158551.k.a #12	ENSGT00900000141059.z #13	ENSGT00940000155098 #14	ENSGT00940000158642 #15	ENSGT00940000153476.a #16	ENSGT01090000260100.B #17	ENSGT00940000158447 #18	ENSGT00900000143170	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #25	ENSGT00950000182944.B.a #26	ENSGT00390000013662 #27	ENSGT00730000111385 #28	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #31	ENSGT00390000005782 #32	ENSGT00390000009048.a.b #33	ENSGT00940000160670 #34	ENSGT00940000156369 #35	ENSGT01080000257410.D.d.b.a #36	ENSGT00940000158167	ENSGT00730000111317	ENSGT00390000017600
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000160730 #8	ENSGT00460000041648 #9	ENSGT00940000159035 #10	ENSGT00940000162473 #11	ENSGT00940000158551.k.a #12	ENSGT00900000141059.z #13	ENSGT00940000155098 #14	ENSGT00940000158642 #15	ENSGT00940000153476.a #16	ENSGT01090000260100.B #17	ENSGT00940000158447 #18	ENSGT00900000143170	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #25	ENSGT00950000182944.B.a #26	ENSGT00390000013662 #27	ENSGT00730000111385 #28	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #31	ENSGT00390000005782 #32	ENSGT00390000009048.a.b #33	ENSGT00940000160670 #34	ENSGT00940000156369 #35	ENSGT01080000257410.D.d.b.a #36	ENSGT00940000164023.c.b #37	ENSGT00940000158167	ENSGT00730000111317
Ryukyu mouse	MODERN SPECIES		Crocc2 (MGP_CAROLIEiJ_G0014450) #7	Sned1 (MGP_CAROLIEiJ_G0014451) #8	Mterf4 (MGP_CAROLIEiJ_G0014452) #9	Pask (MGP_CAROLIEiJ_G0014453) #10	Ppp1r7 (MGP_CAROLIEiJ_G0014454) #11	Ano7 (MGP_CAROLIEiJ_G0014455) #12	Hdlbp (MGP_CAROLIEiJ_G0014456) #13	MGP_CAROLIEiJ_G0014457 #14	Farp2 (MGP_CAROLIEiJ_G0014458) #15	Stk25 (MGP_CAROLIEiJ_G0014459) #16	Bok (MGP_CAROLIEiJ_G0014460) #17	Thap4 (MGP_CAROLIEiJ_G0014461) #18	Atg4b (MGP_CAROLIEiJ_G0014462) #19	Dtymk (MGP_CAROLIEiJ_G0014463) #20	Ing5 (MGP_CAROLIEiJ_G0014464) #21	D2hgdh (MGP_CAROLIEiJ_G0014465) #22	MGP_CAROLIEiJ_G0014466 #23	MGP_CAROLIEiJ_G0014467 #24	MGP_CAROLIEiJ_G0014468 #25	Neu4 (MGP_CAROLIEiJ_G0014469) #26	Pdcd1 (MGP_CAROLIEiJ_G0014470) #27	Fam174a (MGP_CAROLIEiJ_G0014471) #28	St8sia4 (MGP_CAROLIEiJ_G0014472) #29	Slco4c1 (MGP_CAROLIEiJ_G0014473) #30	Slco6c1 (MGP_CAROLIEiJ_G0014474) #31	Macir (MGP_CAROLIEiJ_G0014475) #32	Ppip5k2 (MGP_CAROLIEiJ_G0014476) #33	Gin1 (MGP_CAROLIEiJ_G0014477) #34	Pam (MGP_CAROLIEiJ_G0014478) #35	MGP_CAROLIEiJ_G0014479 #36	Cntnap5b (MGP_CAROLIEiJ_G0014480) #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000160730 #8	ENSGT00460000041648 #9	ENSGT00940000159035 #10	ENSGT00940000162473 #11	ENSGT00940000158551.k.a #12	ENSGT00900000141059.z #13	ENSGT00940000155098 #14	ENSGT00940000158642 #15	ENSGT00940000153476.a #16	ENSGT01090000260100.B #17	ENSGT00940000158447 #18	ENSGT00900000143170	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a.bb #25	ENSGT00950000182944.B.a #26	ENSGT00390000013662 #27	ENSGT00730000111385 #28	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #31	ENSGT00390000005782 #32	ENSGT00390000009048.a.b #33	ENSGT00940000160670 #34	ENSGT00940000156369 #35	ENSGT01080000257410.D.d.b.a #36	ENSGT00940000164023.c.b #37	ENSGT00940000158167	ENSGT00730000111317
Mouse	MODERN SPECIES		Sned1 (ENSMUSG00000047793) #8	Mterf4 (ENSMUSG00000026273) #9	Pask (ENSMUSG00000026274) #10	Ppp1r7 (ENSMUSG00000026275) #11	Ano7 (ENSMUSG00000034107) #12	Hdlbp (ENSMUSG00000034088) #13	Septin2 (ENSMUSG00000026276) #14	Septin2 (ENSMUSG00000116048) #14	Farp2 (ENSMUSG00000034066) #15	Stk25 (ENSMUSG00000026277) #16	Bok (ENSMUSG00000026278) #17	Thap4 (ENSMUSG00000026279) #18	Atg4b (ENSMUSG00000026280) #19	Dtymk (ENSMUSG00000026281) #20	Ing5 (ENSMUSG00000026283) #21	D2hgdh (ENSMUSG00000073609) #22	Gal3st2 (ENSMUSG00000094651) #25	Gal3st2b (ENSMUSG00000093805) #25	Gal3st2c (ENSMUSG00000073608) #25	Neu4 (ENSMUSG00000034000) #26	Pdcd1 (ENSMUSG00000026285) #27	Fam174a (ENSMUSG00000051185) #28	St8sia4 (ENSMUSG00000040710) #29	Slco4c1 (ENSMUSG00000040693) #30	Slco6c1 (ENSMUSG00000026331) #31	Macir (ENSMUSG00000044768) #32	Ppip5k2 (ENSMUSG00000040648) #33	Gin1 (ENSMUSG00000026333) #34	Pam (ENSMUSG00000026335) #35	Slco6d1 (ENSMUSG00000026336) #36	Cntnap5b (ENSMUSG00000067028) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000160730 #8	ENSGT00460000041648 #9	ENSGT00940000159035 #10	ENSGT00940000162473 #11	ENSGT00940000158551.k.a #12	ENSGT00900000141059.z #13	ENSGT00940000155098 #14	ENSGT00940000158642 #15	ENSGT00940000153476.a #16	ENSGT01090000260100.B #17	ENSGT00940000158447 #18	ENSGT00900000143170	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT01050000247607	ENSGT00950000182923.B.a.bb #25	ENSGT00950000182944.B.a #26	ENSGT00390000013662 #27	ENSGT00730000111385 #28	ENSGT01030000234535.F.b #29	ENSGT01080000257410.D.c #30	ENSGT01080000257410.D.d.b.b #31	ENSGT00390000005782 #32	ENSGT00390000009048.a.b #33	ENSGT00940000160670 #34	ENSGT00940000156369 #35	ENSGT01080000257410.D.d.b.a #36	ENSGT00940000164023.c.b #37	ENSGT00940000158167
spretus	MODERN SPECIES		Crocc2 (MGP_SPRETEiJ_G0015254) #7	Sned1 (MGP_SPRETEiJ_G0015255) #8	Mterf4 (MGP_SPRETEiJ_G0015256) #9	Pask (MGP_SPRETEiJ_G0015257) #10	Ppp1r7 (MGP_SPRETEiJ_G0015258) #11	Ano7 (MGP_SPRETEiJ_G0015259) #12	Hdlbp (MGP_SPRETEiJ_G0015260) #13	MGP_SPRETEiJ_G0015261 #14	Farp2 (MGP_SPRETEiJ_G0015262) #15	Stk25 (MGP_SPRETEiJ_G0015263) #16	Bok (MGP_SPRETEiJ_G0015264) #17	Thap4 (MGP_SPRETEiJ_G0015265) #18	Atg4b (MGP_SPRETEiJ_G0015266) #19	Dtymk (MGP_SPRETEiJ_G0015267) #20	Ing5 (MGP_SPRETEiJ_G0015268) #21	D2hgdh (MGP_SPRETEiJ_G0015269) #22	MGP_SPRETEiJ_G0015270	MGP_SPRETEiJ_G0015271 #25	MGP_SPRETEiJ_G0015272 #25	Neu4 (MGP_SPRETEiJ_G0015273) #26	Pdcd1 (MGP_SPRETEiJ_G0015274) #27	Fam174a (MGP_SPRETEiJ_G0015275) #28	St8sia4 (MGP_SPRETEiJ_G0015276) #29	Slco4c1 (MGP_SPRETEiJ_G0015277) #30	MGP_SPRETEiJ_G0015278 #31	Macir (MGP_SPRETEiJ_G0015279) #32	Ppip5k2 (MGP_SPRETEiJ_G0015280) #33	Gin1 (MGP_SPRETEiJ_G0015281) #34	Pam (MGP_SPRETEiJ_G0015282) #35	MGP_SPRETEiJ_G0015283 #36	Cntnap5b (MGP_SPRETEiJ_G0015284) #37
Steppe mouse	MODERN SPECIES	2151								ENSMSIG00000015660 #15	ENSMSIG00000015638 #16	Bok (ENSMSIG00000015629) #17	ENSMSIG00000015626	Thap4 (ENSMSIG00000015596) #18	Atg4b (ENSMSIG00000015526) #19	Dtymk (ENSMSIG00000015486) #20	Ing5 (ENSMSIG00000015435) #21	ENSMSIG00000015376 #22
Shrew mouse	MODERN SPECIES	18	Crocc2 (MGP_PahariEiJ_G0027686) #7	Sned1 (MGP_PahariEiJ_G0027687) #8	Mterf4 (MGP_PahariEiJ_G0027688) #9	Pask (MGP_PahariEiJ_G0027689) #10	Ppp1r7 (MGP_PahariEiJ_G0027690) #11	Ano7 (MGP_PahariEiJ_G0027691) #12	Hdlbp (MGP_PahariEiJ_G0027692) #13	MGP_PahariEiJ_G0027693 #14	Farp2 (MGP_PahariEiJ_G0027694) #15	Stk25 (MGP_PahariEiJ_G0027695) #16	Bok (MGP_PahariEiJ_G0027696) #17	Thap4 (MGP_PahariEiJ_G0027697) #18	Atg4b (MGP_PahariEiJ_G0027698) #19	Dtymk (MGP_PahariEiJ_G0027699) #20	Ing5 (MGP_PahariEiJ_G0027700) #21	D2hgdh (MGP_PahariEiJ_G0027701) #22	MGP_PahariEiJ_G0027702 #25	MGP_PahariEiJ_G0027703 #25	MGP_PahariEiJ_G0027704 #25	Neu4 (MGP_PahariEiJ_G0027705) #26	Pdcd1 (MGP_PahariEiJ_G0027706) #27	Fam174a (MGP_PahariEiJ_G0027707) #28	St8sia4 (MGP_PahariEiJ_G0027708) #29	Slco4c1 (MGP_PahariEiJ_G0027709) #30	MGP_PahariEiJ_G0027710 #31	Macir (MGP_PahariEiJ_G0027711) #32	Ppip5k2 (MGP_PahariEiJ_G0027712) #33	Gin1 (MGP_PahariEiJ_G0027713) #34	Pam (MGP_PahariEiJ_G0027714) #35	Cdh20 (MGP_PahariEiJ_G0027715)	Rnf152 (MGP_PahariEiJ_G0027716)
Rat	MODERN SPECIES	19	Pask (ENSRNOG00000016888) #10	LOC102549694 (ENSRNOG00000066227)	AABR07068351.1 (ENSRNOG00000016974) ##12	Ano7 (ENSRNOG00000023427) #12	Hdlbp (ENSRNOG00000031479) #13	Septin2 (ENSRNOG00000017952) #14	LOC100362040 (ENSRNOG00000030738)	Farp2 (ENSRNOG00000018051) #15	Stk25 (ENSRNOG00000018181) #16	Bok (ENSRNOG00000018214) #17	Thap4 (ENSRNOG00000018351) #18	AC109427.1 (ENSRNOG00000056259)	Atg4b (ENSRNOG00000018403) #19	Dtymk (ENSRNOG00000018904) #20	Ing5 (ENSRNOG00000018988) #21	D2hgdh (ENSRNOG00000019012) #22	Gal3st2c (ENSRNOG00000070509) #25	Neu4 (ENSRNOG00000019031) #26	Pdcd1 (ENSRNOG00000019043) #27	Chchd2l3 (ENSRNOG00000051180)	Fam174a (ENSRNOG00000019087) #28	ENSRNOG00000062997	St8sia4 (ENSRNOG00000019128) #29	Slco4c1 (ENSRNOG00000022711) #30	Slco6b1 (ENSRNOG00000019252) ##36	AABR07068417.1 (ENSRNOG00000025797)	Slco6c1 (ENSRNOG00000013792) #31	Slco6d1 (ENSRNOG00000031146) #36	Pam (ENSRNOG00000033280) #35	Gin1 (ENSRNOG00000011962) #34	Ppip5k2 (ENSRNOG00000011613) #33