Bilateria	ANCESTRAL SPECIES																	ENSGT00550000075086 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00550000075086 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00550000075086 #22
Gnathostomata	ANCESTRAL SPECIES	514										ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22
Euteleostomi	ANCESTRAL SPECIES	251		ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551 #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT01060000250392	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22
Sarcopterygii	ANCESTRAL SPECIES	339					ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22
Tetrapoda	ANCESTRAL SPECIES	73	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22
Amniota	ANCESTRAL SPECIES	43	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Mammalia	ANCESTRAL SPECIES	7	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000161309	ENSGT00940000161858	ENSGT00950000183084.b.b	ENSGT00510000047914.b	ENSGT00940000156311	ENSGT00940000156022.b	ENSGT00390000001652.f.b	ENSGT00950000183153.c.b.a.a	ENSGT00940000159593	ENSGT00940000155387	ENSGT00730000111162	ENSGT00390000006126
Theria	ANCESTRAL SPECIES	5	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000161309	ENSGT00940000161858	ENSGT00950000183084.b.b	ENSGT00510000047914.b	ENSGT00940000156311	ENSGT00940000156022.b	ENSGT00390000001652.f.b	ENSGT00950000183153.c.b.a.a	ENSGT00940000159593	ENSGT00940000155387	ENSGT00730000111162	ENSGT00390000006126
Eutheria	ANCESTRAL SPECIES	39	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00940000157674
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Glires	ANCESTRAL SPECIES	14	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25
Muroidea	ANCESTRAL SPECIES	20	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.z #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #26	ENSGT01030000234535.F.b #28	ENSGT01080000257410.D.c #31	ENSGT01080000257410.D.d.b ##31	ENSGT00940000156369 #33	ENSGT00940000160670 #34	ENSGT00390000009048.a.b #35	ENSGT00390000005782 #36	ENSGT00530000064469 #37	ENSGT00940000157592	ENSGT00940000157299	ENSGT00940000156973
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059.z #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #26	ENSGT01030000234535.F.b #28	ENSGT01080000257410.D.c #31	ENSGT01080000257410.D.d.a ##31	ENSGT00940000156369 #33	ENSGT00940000160670 #34	ENSGT00390000009048.a.b #35	ENSGT00390000005782 #36	ENSGT00530000064469 #37	ENSGT00940000157592	ENSGT00940000157299	ENSGT00940000156973
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059.z #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #26	ENSGT01030000234535.F.b #28	ENSGT01080000257410.D.c #31	ENSGT00940000156369 #33	ENSGT00940000160670 #34	ENSGT00390000009048.a.b #35	ENSGT00390000005782 #36	ENSGT00530000064469 #37	ENSGT00940000157592	ENSGT00940000157299	ENSGT00940000156973	ENSGT00940000154997
Chinese hamster chok1gshd	MODERN SPECIES	1	Sned1 (ENSCGRG00001002826) #7	Mterf4 (ENSCGRG00001006818) #8	Pask (ENSCGRG00001024785) #9	ENSCGRG00001001852 #10	Ano7 (ENSCGRG00001006513) #11	Hdlbp (ENSCGRG00001006086) #12	ENSCGRG00001009996 #13	Farp2 (ENSCGRG00001003923) #14	Stk25 (ENSCGRG00001005671) #15	Bok (ENSCGRG00001024808) #16	Thap4 (ENSCGRG00001002632) #17	ENSCGRG00001006751 #18	Atg4b (ENSCGRG00001001760) #19	Dtymk (ENSCGRG00001000666) #20	Ing5 (ENSCGRG00001004863) #21	D2hgdh (ENSCGRG00001002513) #22	ENSCGRG00001000728 #23	Neu4 (ENSCGRG00001009931) #24	Pdcd1 (ENSCGRG00001002477) #25	Fam174a (ENSCGRG00001002695) #26	ENSCGRG00001010345 #27	St8sia4 (ENSCGRG00001004612) #28	ENSCGRG00001004644 #29	ENSCGRG00001003799 #30	Slco4c1 (ENSCGRG00001010874) #31	ENSCGRG00001010780 #32	Pam (ENSCGRG00001011006) #33	Gin1 (ENSCGRG00001004458) #34	Ppip5k2 (ENSCGRG00001002274) #35	Macir (ENSCGRG00001009855) #36	ENSCGRG00001003228 #37
Golden Hamster	MODERN SPECIES	686	Sned1 (ENSMAUG00000017367) #7	Mterf4 (ENSMAUG00000000081) #8	Pask (ENSMAUG00000018648) #9	ENSMAUG00000013558 #10	Ano7 (ENSMAUG00000013132) #11	Hdlbp (ENSMAUG00000017743) #12	ENSMAUG00000011950 #13	Farp2 (ENSMAUG00000013770) #14	Stk25 (ENSMAUG00000009418) #15	Bok (ENSMAUG00000011149) #16	ENSMAUG00000009008 #17	Atg4b (ENSMAUG00000002031) #19	Dtymk (ENSMAUG00000000268) #20	ENSMAUG00000012792 #20	Ing5 (ENSMAUG00000010995) #21	D2hgdh (ENSMAUG00000008991) #22	ENSMAUG00000006662	ENSMAUG00000018549	Neu4 (ENSMAUG00000004468) #24	Pdcd1 (ENSMAUG00000000914) #25	Fam174a (ENSMAUG00000010921) #26	St8sia4 (ENSMAUG00000008068) #28	Slco4c1 (ENSMAUG00000016086) #31	ENSMAUG00000016737	Pam (ENSMAUG00000013243) #33	Gin1 (ENSMAUG00000014864) #34	Macir (ENSMAUG00000013352) #36	ENSMAUG00000018117 #37	Nudt12 (ENSMAUG00000010818)	Efna5 (ENSMAUG00000016198)	ENSMAUG00000012566
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.z #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #26	ENSGT01030000234535.F.b #28	ENSGT01080000257410.D.c #31	ENSGT01080000257410.D.d.a ##31	ENSGT00940000156369 #33	ENSGT00940000160670 #34	ENSGT00390000009048.a.b #35	ENSGT00390000005782 #36	ENSGT00530000064469 #37	ENSGT00940000157592	ENSGT00940000157299	ENSGT00940000156973
Prairie vole	MODERN SPECIES	354	Sned1 (ENSMOCG00000002594) #7	Mterf4 (ENSMOCG00000010203) #8	Pask (ENSMOCG00000016982) #9	ENSMOCG00000012798	Ano7 (ENSMOCG00000000907) #11	Hdlbp (ENSMOCG00000006679) #12	ENSMOCG00000014906 #13	Farp2 (ENSMOCG00000021782) #14	Stk25 (ENSMOCG00000017547) #15	Bok (ENSMOCG00000016270) #16	ENSMOCG00000014492 #17	Atg4b (ENSMOCG00000013012) #19	Dtymk (ENSMOCG00000006228) #20	ENSMOCG00000005204 #20	Ing5 (ENSMOCG00000014178) #21	D2hgdh (ENSMOCG00000020154) #22	ENSMOCG00000007726 #23	Neu4 (ENSMOCG00000016739) #24	Pdcd1 (ENSMOCG00000014895) #25	ENSMOCG00000003363	Fam174a (ENSMOCG00000015018) #26	St8sia4 (ENSMOCG00000013060) #28	ENSMOCG00000009291	ENSMOCG00000006288	Slco4c1 (ENSMOCG00000004368) #31	ENSMOCG00000018358	ENSMOCG00000006301	Pam (ENSMOCG00000012283) #33	Gin1 (ENSMOCG00000021884) #34	Ppip5k2 (ENSMOCG00000020966) #35	Macir (ENSMOCG00000018727) #36
Northern American deer mouse	MODERN SPECIES	4	Sned1 (ENSPEMG00000008505) #7	Mterf4 (ENSPEMG00000026952) #8	Pask (ENSPEMG00000022938) #9	Ppp1r7 (ENSPEMG00000001859)	Ano7 (ENSPEMG00000011761) #11	Hdlbp (ENSPEMG00000017704) #12	ENSPEMG00000022937 #13	Farp2 (ENSPEMG00000023787) #14	Stk25 (ENSPEMG00000023590) #15	Bok (ENSPEMG00000023399) #16	Thap4 (ENSPEMG00000022638) #17	ENSPEMG00000002288 #18	Atg4b (ENSPEMG00000023843) #19	Dtymk (ENSPEMG00000023813) #20	Ing5 (ENSPEMG00000021508) #21	D2hgdh (ENSPEMG00000021435) #22	ENSPEMG00000013727 #23	Neu4 (ENSPEMG00000022695) #24	Pdcd1 (ENSPEMG00000010110) #25	ENSPEMG00000028919	ENSPEMG00000001999	ENSPEMG00000013367	Fam174a (ENSPEMG00000023963) #26	St8sia4 (ENSPEMG00000025143) #28	Slco4c1 (ENSPEMG00000020395) #31	ENSPEMG00000030212 ##31	ENSPEMG00000017201 ##31	ENSPEMG00000014680	Pam (ENSPEMG00000008719) #33	Gin1 (ENSPEMG00000028100) #34	Ppip5k2 (ENSPEMG00000010567) #35
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.z #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #26	ENSGT01030000234535.F.b #28	ENSGT01080000257410.D.c #31	ENSGT01080000257410.D.d.b.b ##31	ENSGT01080000257410.D.d.b.a ##31	ENSGT00940000156369 #33	ENSGT00940000160670 #34	ENSGT00390000009048.a.b #35	ENSGT00390000005782 #36	ENSGT00530000064469 #37	ENSGT00940000157592	ENSGT00940000157299
Mus	ANCESTRAL SPECIES	5	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.z #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #26	ENSGT01030000234535.F.b #28	ENSGT01080000257410.D.c #31	ENSGT01080000257410.D.d.b.b ##31	ENSGT00390000005782 #36	ENSGT00390000009048.a.b #35	ENSGT00940000160670 #34	ENSGT00940000156369 #33	ENSGT01080000257410.D.d.b.a ##31	ENSGT00940000158167	ENSGT00730000111317	ENSGT00390000017600
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.z #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #26	ENSGT01030000234535.F.b #28	ENSGT01080000257410.D.c #31	ENSGT01080000257410.D.d.b.b ##31	ENSGT00390000005782 #36	ENSGT00390000009048.a.b #35	ENSGT00940000160670 #34	ENSGT00940000156369 #33	ENSGT01080000257410.D.d.b.a ##31	ENSGT00940000164023.c.b	ENSGT00940000158167	ENSGT00730000111317
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.z #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a.bb #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #26	ENSGT01030000234535.F.b #28	ENSGT01080000257410.D.c #31	ENSGT01080000257410.D.d.b.b ##31	ENSGT00390000005782 #36	ENSGT00390000009048.a.b #35	ENSGT00940000160670 #34	ENSGT00940000156369 #33	ENSGT01080000257410.D.d.b.a ##31	ENSGT00940000164023.c.b	ENSGT00940000158167	ENSGT00730000111317
Mouse	MODERN SPECIES		Sned1 (ENSMUSG00000047793) #7	Mterf4 (ENSMUSG00000026273) #8	Pask (ENSMUSG00000026274) #9	Ppp1r7 (ENSMUSG00000026275)	Ano7 (ENSMUSG00000034107) #11	Hdlbp (ENSMUSG00000034088) #12	Septin2 (ENSMUSG00000026276) #13	Septin2 (ENSMUSG00000116048) #13	Farp2 (ENSMUSG00000034066) #14	Stk25 (ENSMUSG00000026277) #15	Bok (ENSMUSG00000026278) #16	Thap4 (ENSMUSG00000026279) #17	Atg4b (ENSMUSG00000026280) #19	Dtymk (ENSMUSG00000026281) #20	Ing5 (ENSMUSG00000026283) #21	D2hgdh (ENSMUSG00000073609) #22	Gal3st2 (ENSMUSG00000094651) #23	Gal3st2b (ENSMUSG00000093805) #23	Gal3st2c (ENSMUSG00000073608) #23	Neu4 (ENSMUSG00000034000) #24	Pdcd1 (ENSMUSG00000026285) #25	Fam174a (ENSMUSG00000051185) #26	St8sia4 (ENSMUSG00000040710) #28	Slco4c1 (ENSMUSG00000040693) #31	Slco6c1 (ENSMUSG00000026331) ##31	Macir (ENSMUSG00000044768) #36	Ppip5k2 (ENSMUSG00000040648) #35	Gin1 (ENSMUSG00000026333) #34	Pam (ENSMUSG00000026335) #33	Slco6d1 (ENSMUSG00000026336) ##31	Cntnap5b (ENSMUSG00000067028)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.z #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT01050000247607	ENSGT00950000182923.B.a.bb #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00730000111385 #26	ENSGT01030000234535.F.b #28	ENSGT01080000257410.D.c #31	ENSGT01080000257410.D.d.b.b ##31	ENSGT00390000005782 #36	ENSGT00390000009048.a.b #35	ENSGT00940000160670 #34	ENSGT00940000156369 #33	ENSGT01080000257410.D.d.b.a ##31	ENSGT00940000164023.c.b	ENSGT00940000158167
spretus	MODERN SPECIES		Crocc2 (MGP_SPRETEiJ_G0015254)	Sned1 (MGP_SPRETEiJ_G0015255) #7	Mterf4 (MGP_SPRETEiJ_G0015256) #8	Pask (MGP_SPRETEiJ_G0015257) #9	Ppp1r7 (MGP_SPRETEiJ_G0015258)	Ano7 (MGP_SPRETEiJ_G0015259) #11	Hdlbp (MGP_SPRETEiJ_G0015260) #12	MGP_SPRETEiJ_G0015261 #13	Farp2 (MGP_SPRETEiJ_G0015262) #14	Stk25 (MGP_SPRETEiJ_G0015263) #15	Bok (MGP_SPRETEiJ_G0015264) #16	Thap4 (MGP_SPRETEiJ_G0015265) #17	Atg4b (MGP_SPRETEiJ_G0015266) #19	Dtymk (MGP_SPRETEiJ_G0015267) #20	Ing5 (MGP_SPRETEiJ_G0015268) #21	D2hgdh (MGP_SPRETEiJ_G0015269) #22	MGP_SPRETEiJ_G0015270	MGP_SPRETEiJ_G0015271 #23	MGP_SPRETEiJ_G0015272 #23	Neu4 (MGP_SPRETEiJ_G0015273) #24	Pdcd1 (MGP_SPRETEiJ_G0015274) #25	Fam174a (MGP_SPRETEiJ_G0015275) #26	St8sia4 (MGP_SPRETEiJ_G0015276) #28	Slco4c1 (MGP_SPRETEiJ_G0015277) #31	MGP_SPRETEiJ_G0015278 ##31	Macir (MGP_SPRETEiJ_G0015279) #36	Ppip5k2 (MGP_SPRETEiJ_G0015280) #35	Gin1 (MGP_SPRETEiJ_G0015281) #34	Pam (MGP_SPRETEiJ_G0015282) #33	MGP_SPRETEiJ_G0015283 ##31	Cntnap5b (MGP_SPRETEiJ_G0015284)
Steppe mouse	MODERN SPECIES	2151								ENSMSIG00000015660 #14	ENSMSIG00000015638 #15	Bok (ENSMSIG00000015629) #16	ENSMSIG00000015626 #18	Thap4 (ENSMSIG00000015596) #17	Atg4b (ENSMSIG00000015526) #19	Dtymk (ENSMSIG00000015486) #20	Ing5 (ENSMSIG00000015435) #21	ENSMSIG00000015376 #22
Ryukyu mouse	MODERN SPECIES		Crocc2 (MGP_CAROLIEiJ_G0014450)	Sned1 (MGP_CAROLIEiJ_G0014451) #7	Mterf4 (MGP_CAROLIEiJ_G0014452) #8	Pask (MGP_CAROLIEiJ_G0014453) #9	Ppp1r7 (MGP_CAROLIEiJ_G0014454)	Ano7 (MGP_CAROLIEiJ_G0014455) #11	Hdlbp (MGP_CAROLIEiJ_G0014456) #12	MGP_CAROLIEiJ_G0014457 #13	Farp2 (MGP_CAROLIEiJ_G0014458) #14	Stk25 (MGP_CAROLIEiJ_G0014459) #15	Bok (MGP_CAROLIEiJ_G0014460) #16	Thap4 (MGP_CAROLIEiJ_G0014461) #17	Atg4b (MGP_CAROLIEiJ_G0014462) #19	Dtymk (MGP_CAROLIEiJ_G0014463) #20	Ing5 (MGP_CAROLIEiJ_G0014464) #21	D2hgdh (MGP_CAROLIEiJ_G0014465) #22	MGP_CAROLIEiJ_G0014466 #23	MGP_CAROLIEiJ_G0014467 #23	MGP_CAROLIEiJ_G0014468 #23	Neu4 (MGP_CAROLIEiJ_G0014469) #24	Pdcd1 (MGP_CAROLIEiJ_G0014470) #25	Fam174a (MGP_CAROLIEiJ_G0014471) #26	St8sia4 (MGP_CAROLIEiJ_G0014472) #28	Slco4c1 (MGP_CAROLIEiJ_G0014473) #31	Slco6c1 (MGP_CAROLIEiJ_G0014474) ##31	Macir (MGP_CAROLIEiJ_G0014475) #36	Ppip5k2 (MGP_CAROLIEiJ_G0014476) #35	Gin1 (MGP_CAROLIEiJ_G0014477) #34	Pam (MGP_CAROLIEiJ_G0014478) #33	MGP_CAROLIEiJ_G0014479 ##31	Cntnap5b (MGP_CAROLIEiJ_G0014480)
Shrew mouse	MODERN SPECIES	18	Crocc2 (MGP_PahariEiJ_G0027686)	Sned1 (MGP_PahariEiJ_G0027687) #7	Mterf4 (MGP_PahariEiJ_G0027688) #8	Pask (MGP_PahariEiJ_G0027689) #9	Ppp1r7 (MGP_PahariEiJ_G0027690)	Ano7 (MGP_PahariEiJ_G0027691) #11	Hdlbp (MGP_PahariEiJ_G0027692) #12	MGP_PahariEiJ_G0027693 #13	Farp2 (MGP_PahariEiJ_G0027694) #14	Stk25 (MGP_PahariEiJ_G0027695) #15	Bok (MGP_PahariEiJ_G0027696) #16	Thap4 (MGP_PahariEiJ_G0027697) #17	Atg4b (MGP_PahariEiJ_G0027698) #19	Dtymk (MGP_PahariEiJ_G0027699) #20	Ing5 (MGP_PahariEiJ_G0027700) #21	D2hgdh (MGP_PahariEiJ_G0027701) #22	MGP_PahariEiJ_G0027702 #23	MGP_PahariEiJ_G0027703 #23	MGP_PahariEiJ_G0027704 #23	Neu4 (MGP_PahariEiJ_G0027705) #24	Pdcd1 (MGP_PahariEiJ_G0027706) #25	Fam174a (MGP_PahariEiJ_G0027707) #26	St8sia4 (MGP_PahariEiJ_G0027708) #28	Slco4c1 (MGP_PahariEiJ_G0027709) #31	MGP_PahariEiJ_G0027710 ##31	Macir (MGP_PahariEiJ_G0027711) #36	Ppip5k2 (MGP_PahariEiJ_G0027712) #35	Gin1 (MGP_PahariEiJ_G0027713) #34	Pam (MGP_PahariEiJ_G0027714) #33	Cdh20 (MGP_PahariEiJ_G0027715)	Rnf152 (MGP_PahariEiJ_G0027716)
Rat	MODERN SPECIES	19	Pask (ENSRNOG00000016888) #9	LOC102549694 (ENSRNOG00000066227)	AABR07068351.1 (ENSRNOG00000016974) #10	Ano7 (ENSRNOG00000023427) #11	Hdlbp (ENSRNOG00000031479) #12	Septin2 (ENSRNOG00000017952) #13	LOC100362040 (ENSRNOG00000030738)	Farp2 (ENSRNOG00000018051) #14	Stk25 (ENSRNOG00000018181) #15	Bok (ENSRNOG00000018214) #16	Thap4 (ENSRNOG00000018351) #17	AC109427.1 (ENSRNOG00000056259) #18	Atg4b (ENSRNOG00000018403) #19	Dtymk (ENSRNOG00000018904) #20	Ing5 (ENSRNOG00000018988) #21	D2hgdh (ENSRNOG00000019012) #22	Gal3st2c (ENSRNOG00000070509) #23	Neu4 (ENSRNOG00000019031) #24	Pdcd1 (ENSRNOG00000019043) #25	Chchd2l3 (ENSRNOG00000051180)	Fam174a (ENSRNOG00000019087) #26	ENSRNOG00000062997	St8sia4 (ENSRNOG00000019128) #28	Slco4c1 (ENSRNOG00000022711) #31	Slco6b1 (ENSRNOG00000019252) ##31	AABR07068417.1 (ENSRNOG00000025797)	Slco6c1 (ENSRNOG00000013792) ##31	Slco6d1 (ENSRNOG00000031146) ##31	Pam (ENSRNOG00000033280) #33	Gin1 (ENSRNOG00000011962) #34	Ppip5k2 (ENSRNOG00000011613) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	634	Crocc2 (ENSNGAG00000021519)	Sned1 (ENSNGAG00000023743) #7	Mterf4 (ENSNGAG00000023724) #8	Pask (ENSNGAG00000007549) #9	ENSNGAG00000017337 #10	Ano7 (ENSNGAG00000022445) #11	Hdlbp (ENSNGAG00000014873) #12	ENSNGAG00000022412 #13	Farp2 (ENSNGAG00000004760) #14	Stk25 (ENSNGAG00000001501) #15	Bok (ENSNGAG00000023762) #16	Thap4 (ENSNGAG00000024010) #17	Atg4b (ENSNGAG00000018585) #19	Dtymk (ENSNGAG00000021440) #20	Ing5 (ENSNGAG00000023305) #21	D2hgdh (ENSNGAG00000023831) #22	Neu4 (ENSNGAG00000017190) #24	Pdcd1 (ENSNGAG00000019405) #25
Lesser Egyptian jerboa	MODERN SPECIES	146	Crocc2 (ENSJJAG00000005843)	Sned1 (ENSJJAG00000012102) #7	Mterf4 (ENSJJAG00000000477) #8	Pask (ENSJJAG00000020114) #9	Ppp1r7 (ENSJJAG00000018768)	Hdlbp (ENSJJAG00000003596) #12	ENSJJAG00000019868 #13	Farp2 (ENSJJAG00000011289) #14	Stk25 (ENSJJAG00000000845) #15	Bok (ENSJJAG00000022455) #16	Thap4 (ENSJJAG00000022829) #17	ENSJJAG00000019840 #19	ENSJJAG00000020306 #19	Dtymk (ENSJJAG00000016941) #20	Ing5 (ENSJJAG00000016649) #21	D2hgdh (ENSJJAG00000009431) #22	Neu4 (ENSJJAG00000003148) #24
Kangaroo rat	MODERN SPECIES	492	Mterf4 (ENSDORG00000028393) #8	Pask (ENSDORG00000004572) #9	Ppp1r7 (ENSDORG00000029280)	ENSDORG00000011305	ENSDORG00000028840 #12	ENSDORG00000000106 #13	ENSDORG00000026265 #14	Stk25 (ENSDORG00000000110) #15	Bok (ENSDORG00000027572) #16	ENSDORG00000023457 #18	Thap4 (ENSDORG00000027598) #17	ENSDORG00000027774 #19	ENSDORG00000016601 #19	Dtymk (ENSDORG00000016603) #20	Ing5 (ENSDORG00000024121) #21	D2hgdh (ENSDORG00000004814) #22	ENSDORG00000015026 #24	Pdcd1 (ENSDORG00000029674) #25	ENSDORG00000004666
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Naked mole-rat female	MODERN SPECIES	30	SNED1 (ENSHGLG00000003686) #7	MTERF4 (ENSHGLG00000003898) #8	PASK (ENSHGLG00000004004) #9	PPP1R7 (ENSHGLG00000004117) #10	HDLBP (ENSHGLG00000004910) #12	ENSHGLG00000005291 #13	FARP2 (ENSHGLG00000015024) #14	ENSHGLG00000042172	ENSHGLG00000014130	STK25 (ENSHGLG00000015089) #15	BOK (ENSHGLG00000015101) #16	THAP4 (ENSHGLG00000015125) #17	ATG4B (ENSHGLG00000018630) #19	DTYMK (ENSHGLG00000018717) #20	ING5 (ENSHGLG00000037490) #21	D2HGDH (ENSHGLG00000003119) #22	GAL3ST2 (ENSHGLG00000003311) #23	NEU4 (ENSHGLG00000003691) #24	PDCD1 (ENSHGLG00000032677) #25	ENSHGLG00000004109	ENSHGLG00000038816	ENSHGLG00000000610	ENSHGLG00000041212	TSPYL4 (ENSHGLG00000036673)	DSE (ENSHGLG00000041966)	CALHM6 (ENSHGLG00000033792)	TRAPPC3L (ENSHGLG00000002142)	CALHM5 (ENSHGLG00000035655)	CALHM4 (ENSHGLG00000002679)	ENSHGLG00000002331	ENSHGLG00000019728
Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25
Guinea pig	MODERN SPECIES	13	SNED1 (ENSCPOG00000006265) #7	MTERF4 (ENSCPOG00000025700) #8	PASK (ENSCPOG00000006277) #9	PPP1R7 (ENSCPOG00000006285) #10	HDLBP (ENSCPOG00000006297) #12	ENSCPOG00000013687 #13	ENSCPOG00000038694	FARP2 (ENSCPOG00000013335) #14	STK25 (ENSCPOG00000022798) #15	ENSCPOG00000025899	BOK (ENSCPOG00000030494) #16	THAP4 (ENSCPOG00000022107) #17	ATG4B (ENSCPOG00000000135) #19	DTYMK (ENSCPOG00000023727) #20	ING5 (ENSCPOG00000038093) #21	D2HGDH (ENSCPOG00000000007) #22	ENSCPOG00000005952 #23	ENSCPOG00000002229 #23	NEU4 (ENSCPOG00000007330) #24	PDCD1 (ENSCPOG00000037292) #25	ENSCPOG00000038878	ENSCPOG00000034749	ENSCPOG00000024854	ENSCPOG00000001586	ENSCPOG00000011923	ENSCPOG00000025453	ENSCPOG00000013424	OR11H4 (ENSCPOG00000011891)	ENSCPOG00000007078	PARP2 (ENSCPOG00000022667)	CCNB1IP1 (ENSCPOG00000009014)
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098.r #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25
Degu	MODERN SPECIES	130	CROCC2 (ENSODEG00000013957)	SNED1 (ENSODEG00000009052) #7	MTERF4 (ENSODEG00000010009) #8	PASK (ENSODEG00000011073) #9	ENSODEG00000011577	ENSODEG00000012313 #12	ENSODEG00000010316 #13	ENSODEG00000019687	FARP2 (ENSODEG00000010817) #14	STK25 (ENSODEG00000010648) #15	BOK (ENSODEG00000011482) #16	THAP4 (ENSODEG00000010347) #17	ENSODEG00000009790 #19	DTYMK (ENSODEG00000010346) #20	ENSODEG00000011084 #21	D2HGDH (ENSODEG00000010827) #22	GAL3ST2 (ENSODEG00000009766) #23	NEU4 (ENSODEG00000012075) #24	PDCD1 (ENSODEG00000011912) #25
Long-tailed chinchilla	MODERN SPECIES	249	CROCC2 (ENSCLAG00000002724)	SNED1 (ENSCLAG00000002607) #7	MTERF4 (ENSCLAG00000002565) #8	PASK (ENSCLAG00000002519) #9	ENSCLAG00000002485	HDLBP (ENSCLAG00000002365) #12	ENSCLAG00000002255 #13	FARP2 (ENSCLAG00000002135) #14	STK25 (ENSCLAG00000002040) #15	BOK (ENSCLAG00000002024) #16	ENSCLAG00000002013 #18	THAP4 (ENSCLAG00000002361) #17	ATG4B (ENSCLAG00000002262) #19	DTYMK (ENSCLAG00000002150) #20	ING5 (ENSCLAG00000002116) #21	D2HGDH (ENSCLAG00000001990) #22	GAL3ST2 (ENSCLAG00000001967) #23	NEU4 (ENSCLAG00000001894) #24	PDCD1 (ENSCLAG00000001882) #25
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Eurasian red squirrel	MODERN SPECIES	12	SNED1 (ENSSVLG00005010615) #7	MTERF4 (ENSSVLG00005010874) #8	ENSSVLG00005010962 #9	ENSSVLG00005011084	ENSSVLG00005011132	HDLBP (ENSSVLG00005011227) #12	ENSSVLG00005011546 #13	FARP2 (ENSSVLG00005011791) #14	STK25 (ENSSVLG00005011880) #15	BOK (ENSSVLG00005012052) #16	THAP4 (ENSSVLG00005012097) #17	ENSSVLG00005012212 #18	ATG4B (ENSSVLG00005012261) #19	DTYMK (ENSSVLG00005012417) #20	ING5 (ENSSVLG00005012450) #21	D2HGDH (ENSSVLG00005012513) #22	GAL3ST2 (ENSSVLG00005012622) #23	NEU4 (ENSSVLG00005012671) #24	PDCD1 (ENSSVLG00005012721) #25	ENSSVLG00005012795	PRDM9 (ENSSVLG00005012896)
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00940000165655
Marmotini_b	ANCESTRAL SPECIES	41	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00940000165655
Arctic ground squirrel	MODERN SPECIES	972										BOK (ENSUPAG00010003241) #16	THAP4 (ENSUPAG00010003245) #17	ATG4B (ENSUPAG00010003261) #19	DTYMK (ENSUPAG00010003278) #20	ENSUPAG00010003293	ING5 (ENSUPAG00010003300) #21	D2HGDH (ENSUPAG00010003310) #22
Squirrel	MODERN SPECIES	345	GPR35 (ENSSTOG00000026086)	ENSSTOG00000022231	KIF1A (ENSSTOG00000021868)	AGXT (ENSSTOG00000008004)	MAB21L4 (ENSSTOG00000006007)	SNED1 (ENSSTOG00000031779) #7	ENSSTOG00000016306	HDLBP (ENSSTOG00000013331) #12	SEPTIN2 (ENSSTOG00000013357) #13	FARP2 (ENSSTOG00000022815) #14	STK25 (ENSSTOG00000026742) #15	BOK (ENSSTOG00000028135) #16	THAP4 (ENSSTOG00000015998) #17	ATG4B (ENSSTOG00000014734) #19	ING5 (ENSSTOG00000005977) #21	D2HGDH (ENSSTOG00000023380) #22	PDCD1 (ENSSTOG00000022396) #25	ENSSTOG00000025755
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	8	SNED1 (ENSMMMG00000007168) #7	MTERF4 (ENSMMMG00000007236) #8	ENSMMMG00000007249 #9	ENSMMMG00000007277	ENSMMMG00000007280	HDLBP (ENSMMMG00000007299) #12	SEPTIN2 (ENSMMMG00000007576) #13	ENSMMMG00000007620 #14	ENSMMMG00000007659 #14	STK25 (ENSMMMG00000007681) #15	ENSMMMG00000007706 #15	BOK (ENSMMMG00000007720) #16	THAP4 (ENSMMMG00000007741) #17	ATG4B (ENSMMMG00000007760) #19	DTYMK (ENSMMMG00000007781) #20	D2HGDH (ENSMMMG00000007799) #22	NEU4 (ENSMMMG00000007853) #24	PDCD1 (ENSMMMG00000007868) #25	ENSMMMG00000007882	ENSMMMG00000007896	ENSMMMG00000007913
Alpin marmot	MODERN SPECIES	275																ENSMMMG00000007944 #22
Lagomorpha	ANCESTRAL SPECIES	239										ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Rabbit	MODERN SPECIES	761										ENSOCUG00000021536 #16	THAP4 (ENSOCUG00000011164) #17	ENSOCUG00000032757 #18	ATG4B (ENSOCUG00000021604) #19	DTYMK (ENSOCUG00000005955) #20	ING5 (ENSOCUG00000024916) #21	D2HGDH (ENSOCUG00000022982) #22	GAL3ST2 (ENSOCUG00000004955) #23	ENSOCUG00000021920 #24	ENSOCUG00000008079 #25	ENSOCUG00000024447
Pika	MODERN SPECIES	3168																ENSOPRG00000015309 #22	GAL3ST2 (ENSOPRG00000015320) #23
Primates	ANCESTRAL SPECIES	13	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00910000148484	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Pan	ANCESTRAL SPECIES	12	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Chimpanzee	MODERN SPECIES	15	SNED1 (ENSPTRG00000013115) #7	MTERF4 (ENSPTRG00000013116) #8	PASK (ENSPTRG00000013117) #9	PPP1R7 (ENSPTRG00000013118) #10	ANO7 (ENSPTRG00000013119) #11	HDLBP (ENSPTRG00000013121) #12	ENSPTRG00000048829	SEPTIN2 (ENSPTRG00000023481) #13	FARP2 (ENSPTRG00000013123) #14	STK25 (ENSPTRG00000013125) #15	BOK (ENSPTRG00000041947) #16	THAP4 (ENSPTRG00000013127) #17	ATG4B (ENSPTRG00000013128) #19	DTYMK (ENSPTRG00000013129) #20	ING5 (ENSPTRG00000013130) #21	D2HGDH (ENSPTRG00000013131) #22	GAL3ST2 (ENSPTRG00000028939) #23	NEU4 (ENSPTRG00000052792) #24	PDCD1 (ENSPTRG00000051175) #25	RTP5 (ENSPTRG00000050003)	FAM240C (ENSPTRG00000048180)
Bonobo	MODERN SPECIES	15	MTERF4 (ENSPPAG00000041007) #8	PASK (ENSPPAG00000035044) #9	PPP1R7 (ENSPPAG00000040077) #10	ANO7 (ENSPPAG00000043317) #11	HDLBP (ENSPPAG00000023318) #12	ENSPPAG00000038175	SEPTIN2 (ENSPPAG00000034127) #13	FARP2 (ENSPPAG00000041862) #14	STK25 (ENSPPAG00000025391) #15	BOK (ENSPPAG00000043219) #16	THAP4 (ENSPPAG00000031801) #17	ATG4B (ENSPPAG00000035793) #19	DTYMK (ENSPPAG00000040798) #20	ENSPPAG00000014840 #21	ENSPPAG00000028175	D2HGDH (ENSPPAG00000000643) #22	GAL3ST2 (ENSPPAG00000031227) #23
Human	MODERN SPECIES	11	CROCC2 (ENSG00000226321)	SNED1 (ENSG00000162804) #7	MTERF4 (ENSG00000122085) #8	PASK (ENSG00000115687) #9	PPP1R7 (ENSG00000115685) #10	ANO7 (ENSG00000146205) #11	HDLBP (ENSG00000115677) #12	SEPTIN2 (ENSG00000168385) #13	FARP2 (ENSG00000006607) #14	STK25 (ENSG00000115694) #15	BOK (ENSG00000176720) #16	THAP4 (ENSG00000176946) #17	ATG4B (ENSG00000168397) #19	DTYMK (ENSG00000168393) #20	ING5 (ENSG00000168395) #21	D2HGDH (ENSG00000180902) #22	GAL3ST2 (ENSG00000154252) #23	NEU4 (ENSG00000204099) #24	PDCD1 (ENSG00000188389) #25	RTP5 (ENSG00000188011)	FAM240C (ENSG00000216921)
Gorilla	MODERN SPECIES	15	CROCC2 (ENSGGOG00000041336)	SNED1 (ENSGGOG00000012750) #7	MTERF4 (ENSGGOG00000036917) #8	PASK (ENSGGOG00000012790) #9	PPP1R7 (ENSGGOG00000012805) #10	ANO7 (ENSGGOG00000004380) #11	HDLBP (ENSGGOG00000004392) #12	SEPTIN2 (ENSGGOG00000004597) #13	FARP2 (ENSGGOG00000004259) #14	ENSGGOG00000004267 #15	BOK (ENSGGOG00000036914) #16	ENSGGOG00000015684 #17	ATG4B (ENSGGOG00000001208) #19	DTYMK (ENSGGOG00000001209) #20	ENSGGOG00000000093 #21	D2HGDH (ENSGGOG00000014288) #22	GAL3ST2 (ENSGGOG00000014294) #23	NEU4 (ENSGGOG00000014302) #24	PDCD1 (ENSGGOG00000014312) #25	RTP5 (ENSGGOG00000016451)	FAM240C (ENSGGOG00000016303)
Orangutan	MODERN SPECIES	15	CROCC2 (ENSPPYG00000036734)	SNED1 (ENSPPYG00000013346) #7	MTERF4 (ENSPPYG00000013347) #8	PASK (ENSPPYG00000013348) #9	PPP1R7 (ENSPPYG00000013349) #10	ANO7 (ENSPPYG00000013350) #11	HDLBP (ENSPPYG00000013351) #12	SEPTIN2 (ENSPPYG00000013353) #13	FARP2 (ENSPPYG00000013354) #14	STK25 (ENSPPYG00000025879) #15	BOK (ENSPPYG00000013355) #16	THAP4 (ENSPPYG00000013356) #17	ATG4B (ENSPPYG00000013357) #19	DTYMK (ENSPPYG00000013358) #20	ENSPPYG00000037269 #21	D2HGDH (ENSPPYG00000030619) #22	GAL3ST2 (ENSPPYG00000013359) #23	NEU4 (ENSPPYG00000013369) #24	PDCD1 (ENSPPYG00000034037) #25	RTP5 (ENSPPYG00000013362)	ENSPPYG00000040582	FAM240C (ENSPPYG00000039376)	ENSPPYG00000036844	ENSPPYG00000013363
Gibbon	MODERN SPECIES	14	CROCC2 (ENSNLEG00000029188)	SNED1 (ENSNLEG00000013708) #7	MTERF4 (ENSNLEG00000013727) #8	PASK (ENSNLEG00000013731) #9	PPP1R7 (ENSNLEG00000013766) #10	ANO7 (ENSNLEG00000013806) #11	HDLBP (ENSNLEG00000013818) #12	SEPTIN2 (ENSNLEG00000013873) #13	FARP2 (ENSNLEG00000013956) #14	STK25 (ENSNLEG00000013968) #15	BOK (ENSNLEG00000007762) #16	THAP4 (ENSNLEG00000007765) #17	ATG4B (ENSNLEG00000007770) #19	ENSNLEG00000007771 #20	ENSNLEG00000035403 #21	D2HGDH (ENSNLEG00000007775) #22	GAL3ST2 (ENSNLEG00000007778) #23	PDCD1 (ENSNLEG00000007780) #25
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442	ENSGT00940000164262
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442	ENSGT00940000164262
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442	ENSGT00940000164262
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442	ENSGT00940000164262
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000054710 #7	ENSMFAG00000001771 #7	MTERF4 (ENSMFAG00000026775) #8	PASK (ENSMFAG00000037737) #9	ENSMFAG00000038150	ANO7 (ENSMFAG00000001859) #11	HDLBP (ENSMFAG00000033641) #12	SEPTIN2 (ENSMFAG00000039700) #13	FARP2 (ENSMFAG00000044112) #14	STK25 (ENSMFAG00000044279) #15	BOK (ENSMFAG00000000539) #16	THAP4 (ENSMFAG00000042330) #17	ATG4B (ENSMFAG00000039952) #19	DTYMK (ENSMFAG00000040279) #20	ING5 (ENSMFAG00000035525) #21	D2HGDH (ENSMFAG00000041453) #22	GAL3ST2 (ENSMFAG00000049116) #23	NEU4 (ENSMFAG00000001183) #24	RTP5 (ENSMFAG00000062887)	FAM240C (ENSMFAG00000030747)	ENSMFAG00000064509	ENSMFAG00000044087
Rhesus	MODERN SPECIES	3	CROCC2 (ENSMMUG00000041795)	SNED1 (ENSMMUG00000004968) #7	MTERF4 (ENSMMUG00000006835) #8	PASK (ENSMMUG00000016207) #9	PPP1R7 (ENSMMUG00000016209)	ANO7 (ENSMMUG00000001721) #11	HDLBP (ENSMMUG00000004730) #12	SEPTIN2 (ENSMMUG00000004736) #13	FARP2 (ENSMMUG00000001313) #14	STK25 (ENSMMUG00000001314) #15	BOK (ENSMMUG00000056380) #16	THAP4 (ENSMMUG00000005662) #17	ATG4B (ENSMMUG00000008047) #19	DTYMK (ENSMMUG00000008049) #20	ING5 (ENSMMUG00000014102) #21	D2HGDH (ENSMMUG00000018548) #22	GAL3ST2 (ENSMMUG00000016941) #23	NEU4 (ENSMMUG00000014405) #24	PDCD1 (ENSMMUG00000063159) #25	RTP5 (ENSMMUG00000042630)	FAM240C (ENSMMUG00000062013)	ENSMMUG00000064044	ENSMMUG00000050185	ENSMMUG00000051574
Pig-tailed macaque	MODERN SPECIES	525	SNED1 (ENSMNEG00000042251) #7	MTERF4 (ENSMNEG00000040061) #8	PASK (ENSMNEG00000030367) #9	ENSMNEG00000005914	ANO7 (ENSMNEG00000033411) #11	HDLBP (ENSMNEG00000024260) #12	SEPTIN2 (ENSMNEG00000004313) #13	ENSMNEG00000013427	FARP2 (ENSMNEG00000030159) #14	STK25 (ENSMNEG00000000451) #15	BOK (ENSMNEG00000029533) #16	THAP4 (ENSMNEG00000034774) #17	ATG4B (ENSMNEG00000038244) #19	DTYMK (ENSMNEG00000026091) #20	ING5 (ENSMNEG00000013535) #21	D2HGDH (ENSMNEG00000028062) #22	GAL3ST2 (ENSMNEG00000029038) #23	NEU4 (ENSMNEG00000042060) #24	PDCD1 (ENSMNEG00000034272) #25	RTP5 (ENSMNEG00000020448)	ENSMNEG00000044888	ENSMNEG00000039681	ENSMNEG00000042257	ENSMNEG00000012191
Cercopithecinae_b	ANCESTRAL SPECIES	60	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00390000018318.u.b.a.a.o	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Olive baboon	MODERN SPECIES	1	MAB21L4 (ENSPANG00000013759)	SNED1 (ENSPANG00000012985) #7	MTERF4 (ENSPANG00000014465) #8	PASK (ENSPANG00000021941) #9	ENSPANG00000009640	ENSPANG00000046499 #11	HDLBP (ENSPANG00000011832) #12	SEPTIN2 (ENSPANG00000007917) #13	FARP2 (ENSPANG00000019972) #14	STK25 (ENSPANG00000010069) #15	BOK (ENSPANG00000034368) #16	THAP4 (ENSPANG00000020992) #17	ATG4B (ENSPANG00000009064) #19	DTYMK (ENSPANG00000011079) #20	ING5 (ENSPANG00000023377) #21	D2HGDH (ENSPANG00000013755) #22	GAL3ST2 (ENSPANG00000009063) #23	NEU4 (ENSPANG00000016562) #24	PDCD1 (ENSPANG00000050115) #25	RTP5 (ENSPANG00000016825)	FAM240C (ENSPANG00000015971)	ENSPANG00000012766
Cercopithecinae_d	ANCESTRAL SPECIES	158	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00390000018318.u.b.a.a.o	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Sooty mangabey	MODERN SPECIES	107	CROCC2 (ENSCATG00000043230)	SNED1 (ENSCATG00000014152) #7	MTERF4 (ENSCATG00000021725) #8	PASK (ENSCATG00000039320) #9	ENSCATG00000016069	ANO7 (ENSCATG00000037143) #11	HDLBP (ENSCATG00000039363) #12	SEPTIN2 (ENSCATG00000033533) #13	FARP2 (ENSCATG00000032346) #14	STK25 (ENSCATG00000044719) #15	BOK (ENSCATG00000028994) #16	THAP4 (ENSCATG00000029531) #17	ATG4B (ENSCATG00000032957) #19	DTYMK (ENSCATG00000030835) #20	ING5 (ENSCATG00000039625) #21	D2HGDH (ENSCATG00000044824) #22	GAL3ST2 (ENSCATG00000029685) #23	NEU4 (ENSCATG00000003787) #24	PDCD1 (ENSCATG00000032569) #25	RTP5 (ENSCATG00000038813)	FAM240C (ENSCATG00000045039)	ENSCATG00000036282	ENSCATG00000020706
Drill	MODERN SPECIES	1204	MTERF4 (ENSMLEG00000035945) #8	PASK (ENSMLEG00000042258) #9	ENSMLEG00000033467	ANO7 (ENSMLEG00000004758) #11	HDLBP (ENSMLEG00000042734) #12	SEPTIN2 (ENSMLEG00000043469) #13	ENSMLEG00000019175	ENSMLEG00000000708	FARP2 (ENSMLEG00000031088) #14	STK25 (ENSMLEG00000043898) #15	ENSMLEG00000034287 #16	THAP4 (ENSMLEG00000028926) #17	ATG4B (ENSMLEG00000028526) #19	DTYMK (ENSMLEG00000020102) #20	ING5 (ENSMLEG00000034909) #21	D2HGDH (ENSMLEG00000041989) #22
Vervet Monkey	MODERN SPECIES	1	ENSCSAG00000005915	SNED1 (ENSCSAG00000005891) #7	MTERF4 (ENSCSAG00000005845) #8	PASK (ENSCSAG00000005843) #9	ENSCSAG00000005841	ANO7 (ENSCSAG00000005815) #11	HDLBP (ENSCSAG00000005781) #12	SEPTIN2 (ENSCSAG00000005773) #13	FARP2 (ENSCSAG00000005767) #14	STK25 (ENSCSAG00000005762) #15	BOK (ENSCSAG00000005758) #16	THAP4 (ENSCSAG00000005755) #17	ATG4B (ENSCSAG00000005753) #19	DTYMK (ENSCSAG00000005751) #20	ING5 (ENSCSAG00000005749) #21	D2HGDH (ENSCSAG00000005748) #22	GAL3ST2 (ENSCSAG00000005745) #23	NEU4 (ENSCSAG00000005741) #24	PDCD1 (ENSCSAG00000005736) #25	RTP5 (ENSCSAG00000005728)	FAM240C (ENSCSAG00000005723)
Rhinopithecus	ANCESTRAL SPECIES	45	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442	ENSGT00940000164262	ENSGT00940000155308.db.b
Black snub-nosed monkey	MODERN SPECIES	331										STK25 (ENSRBIG00000036175) #15	BOK (ENSRBIG00000038898) #16	THAP4 (ENSRBIG00000033273) #17	ATG4B (ENSRBIG00000036804) #19	DTYMK (ENSRBIG00000029735) #20	ING5 (ENSRBIG00000040219) #21	D2HGDH (ENSRBIG00000041317) #22
Golden snub-nosed monkey	MODERN SPECIES	2006	CROCC2 (ENSRROG00000032397)	SNED1 (ENSRROG00000035035) #7	MTERF4 (ENSRROG00000025293) #8	PASK (ENSRROG00000031156) #9	ENSRROG00000015177	ANO7 (ENSRROG00000035904) #11	HDLBP (ENSRROG00000034263) #12	SEPTIN2 (ENSRROG00000031700) #13	FARP2 (ENSRROG00000030018) #14	STK25 (ENSRROG00000040296) #15	BOK (ENSRROG00000036337) #16	THAP4 (ENSRROG00000045112) #17	ATG4B (ENSRROG00000044313) #19	DTYMK (ENSRROG00000029206) #20	ING5 (ENSRROG00000031632) #21	D2HGDH (ENSRROG00000030612) #22	GAL3ST2 (ENSRROG00000037572) #23	NEU4 (ENSRROG00000009498) #24	PDCD1 (ENSRROG00000038538) #25	RTP5 (ENSRROG00000016782)	FAM240C (ENSRROG00000045304)	ENSRROG00000035321	ENSRROG00000034706
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a.q #20	ENSGT00940000154030.a.a.r #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00510000055442
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a.r #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00510000055442
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b.a #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059.s #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a.r #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00510000055442
Capuchin	MODERN SPECIES	443	MTERF4 (ENSCCAG00000028780) #8	PASK (ENSCCAG00000026306) #9	PPP1R7 (ENSCCAG00000025668) #10	ANO7 (ENSCCAG00000033209) #11	ENSCCAG00000023361 #12	SEPTIN2 (ENSCCAG00000031252) #13	ENSCCAG00000034359	FARP2 (ENSCCAG00000025705) #14	STK25 (ENSCCAG00000021446) #15	BOK (ENSCCAG00000028486) #16	THAP4 (ENSCCAG00000026683) #17	ATG4B (ENSCCAG00000029373) #19	DTYMK (ENSCCAG00000024318) #20	ENSCCAG00000028409	ING5 (ENSCCAG00000028689) #21	D2HGDH (ENSCCAG00000027548) #22	GAL3ST2 (ENSCCAG00000031743) #23	NEU4 (ENSCCAG00000037683) #24	PDCD1 (ENSCCAG00000031217) #25	FAM240C (ENSCCAG00000028555)	ENSCCAG00000030963
Bolivian squirrel monkey	MODERN SPECIES	128	CROCC2 (ENSSBOG00000031400)	SNED1 (ENSSBOG00000034978) #7	MTERF4 (ENSSBOG00000025209) #8	PASK (ENSSBOG00000029892) #9	ENSSBOG00000001483 #10	ANO7 (ENSSBOG00000028401) #11	ENSSBOG00000029714 #12	SEPTIN2 (ENSSBOG00000016731) #13	FARP2 (ENSSBOG00000034642) #14	STK25 (ENSSBOG00000027024) #15	BOK (ENSSBOG00000024648) #16	THAP4 (ENSSBOG00000027518) #17	ATG4B (ENSSBOG00000035855) #19	DTYMK (ENSSBOG00000029987) #20	ING5 (ENSSBOG00000034276) #21	D2HGDH (ENSSBOG00000021525) #22	GAL3ST2 (ENSSBOG00000034116) #23	NEU4 (ENSSBOG00000034595) #24	PDCD1 (ENSSBOG00000030074) #25
Marmoset	MODERN SPECIES	18	CROCC2 (ENSCJAG00000075544)	SNED1 (ENSCJAG00000006352) #7	MTERF4 (ENSCJAG00000006346) #8	PASK (ENSCJAG00000073377) #9	PPP1R7 (ENSCJAG00000006275) #10	ANO7 (ENSCJAG00000064163) #11	HDLBP (ENSCJAG00000006152) #12	ENSCJAG00000006122 #13	FARP2 (ENSCJAG00000006087) #14	STK25 (ENSCJAG00000006066) #15	BOK (ENSCJAG00000000544) #16	THAP4 (ENSCJAG00000000540) #17	ATG4B (ENSCJAG00000011210) #19	DTYMK (ENSCJAG00000011203) #20	ING5 (ENSCJAG00000011198) #21	D2HGDH (ENSCJAG00000011190) #22	GAL3ST2 (ENSCJAG00000075909) #23	NEU4 (ENSCJAG00000039820) #24	PDCD1 (ENSCJAG00000079209) #25
Mas night monkey	MODERN SPECIES	970											BOK (ENSANAG00000029279) #16	THAP4 (ENSANAG00000021071) #17	ATG4B (ENSANAG00000021141) #19	ENSANAG00000026496 #20	ING5 (ENSANAG00000016624) #21	D2HGDH (ENSANAG00000027855) #22	GAL3ST2 (ENSANAG00000026379) #23	NEU4 (ENSANAG00000022417) #24	PDCD1 (ENSANAG00000032711) #25	FAM240C (ENSANAG00000022232)
Tarsier	MODERN SPECIES	2268	ENSTSYG00000030035 #9	ENSTSYG00000029105	PPP1R7 (ENSTSYG00000005960) #10	ANO7 (ENSTSYG00000031987) #11	HDLBP (ENSTSYG00000002379) #12	SEPT2 (ENSTSYG00000003579) #13	ENSTSYG00000029361	ENSTSYG00000028402	FARP2 (ENSTSYG00000003599) #14	STK25 (ENSTSYG00000002980) #15	BOK (ENSTSYG00000035854) #16	THAP4 (ENSTSYG00000002410) #17	ATG4B (ENSTSYG00000011099) #19	ENSTSYG00000037438 #20	ING5 (ENSTSYG00000027487) #21	D2HGDH (ENSTSYG00000026014) #22	GAL3ST2 (ENSTSYG00000033878) #23	NEU4 (ENSTSYG00000027639) #24
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Mouse lemur	MODERN SPECIES	30	MAB21L4 (ENSMICG00000009170)	SNED1 (ENSMICG00000012979) #7	MTERF4 (ENSMICG00000044756) #8	PASK (ENSMICG00000013010) #9	ENSMICG00000017782	HDLBP (ENSMICG00000004569) #12	SEPTIN2 (ENSMICG00000000909) #13	FARP2 (ENSMICG00000012071) #14	STK25 (ENSMICG00000012111) #15	BOK (ENSMICG00000029950) #16	THAP4 (ENSMICG00000016452) #17	ATG4B (ENSMICG00000013114) #19	ENSMICG00000042660 #18	DTYMK (ENSMICG00000013135) #20	ING5 (ENSMICG00000028191) #21	D2HGDH (ENSMICG00000016497) #22	GAL3ST2 (ENSMICG00000016500) #23	NEU4 (ENSMICG00000034826) #24	PDCD1 (ENSMICG00000032951) #25	RTP5 (ENSMICG00000045438)	ENSMICG00000017470	ENSMICG00000047235	ENSMICG00000000206	ACKR3 (ENSMICG00000008095)	IQCA1 (ENSMICG00000008062)	ASB18 (ENSMICG00000042020)	GBX2 (ENSMICG00000028176)	AGAP1 (ENSMICG00000008660)	SH3BP4 (ENSMICG00000004598)	ENSMICG00000034713	ARL4C (ENSMICG00000017503)
Lemuriformes_a	ANCESTRAL SPECIES	80	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.b #10	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Coquerels sifaka	MODERN SPECIES	879							HDLBP (ENSPCOG00000021622) #12	ENSPCOG00000028482 #13	FARP2 (ENSPCOG00000016260) #14	STK25 (ENSPCOG00000023236) #15	BOK (ENSPCOG00000012929) #16	THAP4 (ENSPCOG00000006649) #17	ATG4B (ENSPCOG00000014315) #19	DTYMK (ENSPCOG00000023194) #20	ING5 (ENSPCOG00000025941) #21	D2HGDH (ENSPCOG00000014775) #22	GAL3ST2 (ENSPCOG00000026156) #23	NEU4 (ENSPCOG00000019644) #24	PDCD1 (ENSPCOG00000022702) #25	RTP5 (ENSPCOG00000011030)
Greater bamboo lemur	MODERN SPECIES	509											BOK (ENSPSMG00000011852) #16	ENSPSMG00000011840 #18	THAP4 (ENSPSMG00000011826) #17	ENSPSMG00000011794	ING5 (ENSPSMG00000011787) #21	D2HGDH (ENSPSMG00000011774) #22	GAL3ST2 (ENSPSMG00000011753) #23	NEU4 (ENSPSMG00000011725) #24	PDCD1 (ENSPSMG00000011707) #25
Bushbaby	MODERN SPECIES	472															ING5 (ENSOGAG00000034901) #21	D2HGDH (ENSOGAG00000029812) #22	NEU4 (ENSOGAG00000030618) #24	PDCD1 (ENSOGAG00000006347) #25	ENSOGAG00000025945
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Suina	ANCESTRAL SPECIES	3	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Chacoan peccary	MODERN SPECIES	832	SNED1 (ENSCWAG00000011634) #7	ENSCWAG00000012181 #8	PASK (ENSCWAG00000012224) #9	ENSCWAG00000012726	HDLBP (ENSCWAG00000013005) #12	SEPTIN2 (ENSCWAG00000013123) #13	ENSCWAG00000013218 #14	ENSCWAG00000013251 #14	STK25 (ENSCWAG00000013336) #15	BOK (ENSCWAG00000013639) #16	THAP4 (ENSCWAG00000013684) #17	ENSCWAG00000013803 #18	ATG4B (ENSCWAG00000013856) #19	DTYMK (ENSCWAG00000013982) #20	ING5 (ENSCWAG00000014011) #21	D2HGDH (ENSCWAG00000014047) #22	NEU4 (ENSCWAG00000014312) #24	PDCD1 (ENSCWAG00000014661) #25	ENSCWAG00000014695	PRRX1 (ENSCWAG00000014722)	GORAB (ENSCWAG00000014835)	ENSCWAG00000014952	NTMT2 (ENSCWAG00000014967)	KIFAP3 (ENSCWAG00000015031)	SCYL3 (ENSCWAG00000015287)	C1orf112 (ENSCWAG00000015365)	METTL18 (ENSCWAG00000015401)	ENSCWAG00000015426	SELE (ENSCWAG00000015466)	SELL (ENSCWAG00000015551)	SELP (ENSCWAG00000015691)
Pig	MODERN SPECIES	6	CROCC2 (ENSSSCG00000036261)	SNED1 (ENSSSCG00000016381) #7	MTERF4 (ENSSSCG00000055566) #8	PASK (ENSSSCG00000016378) #9	PPP1R7 (ENSSSCG00000016376) #10	HDLBP (ENSSSCG00000016379) #12	SEPTIN2 (ENSSSCG00000016370) #13	FARP2 (ENSSSCG00000016368) #14	STK25 (ENSSSCG00000016372) #15	BOK (ENSSSCG00000032684) #16	THAP4 (ENSSSCG00000016374) #17	ENSSSCG00000034534 #18	ATG4B (ENSSSCG00000032919) #19	DTYMK (ENSSSCG00000034147) #20	ING5 (ENSSSCG00000032505) #21	D2HGDH (ENSSSCG00000034101) #22	GAL3ST2 (ENSSSCG00000063392) #23	NEU4 (ENSSSCG00000037090) #24	PDCD1 (ENSSSCG00000037319) #25	ENSSSCG00000032511
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Cetacea	ANCESTRAL SPECIES	14	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00390000013662 #25	ENSGT00510000055442	ENSGT00950000182944.B.a #24
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00510000055442
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00390000008099.hb.a	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00390000013662 #25	ENSGT00510000055442
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000162473	ENSGT00390000008099.hb.a	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00390000013662 #25	ENSGT00510000055442
Narwhal	MODERN SPECIES	302	ENSMMNG00015006704	ENSMMNG00015006583	ENSMMNG00015006538	ANO7 (ENSMMNG00015006498) #11	HDLBP (ENSMMNG00015006421) #12	SEPTIN2 (ENSMMNG00015006371) #13	ENSMMNG00015006327 #14	ENSMMNG00015006295 #14	STK25 (ENSMMNG00015006252) #15	BOK (ENSMMNG00015006222) #16	ENSMMNG00015006208 #18	THAP4 (ENSMMNG00015006183) #17	ATG4B (ENSMMNG00015006126) #19	DTYMK (ENSMMNG00015006094) #20	ING5 (ENSMMNG00015006077) #21	D2HGDH (ENSMMNG00015006051) #22	PDCD1 (ENSMMNG00015005985) #25	FAM240C (ENSMMNG00015005972)	GLI2 (ENSMMNG00015005932)
Beluga whale	MODERN SPECIES	84	PASK (ENSDLEG00000017274) #9	PPP1R7 (ENSDLEG00000017316)	ENSDLEG00000017363	ANO7 (ENSDLEG00000017385) #11	HDLBP (ENSDLEG00000017451) #12	SEPTIN2 (ENSDLEG00000017514) #13	ENSDLEG00000017553 #14	ENSDLEG00000017575 #14	STK25 (ENSDLEG00000017589) #15	BOK (ENSDLEG00000017618) #16	THAP4 (ENSDLEG00000017630) #17	ENSDLEG00000017639 #18	ATG4B (ENSDLEG00000017656) #19	DTYMK (ENSDLEG00000017734) #20	ING5 (ENSDLEG00000017756) #21	D2HGDH (ENSDLEG00000017797) #22	PDCD1 (ENSDLEG00000017819) #25
Vaquita	MODERN SPECIES	18	ENSPSNG00000001072 #8	PASK (ENSPSNG00000001035) #9	ENSPSNG00000000982	ENSPSNG00000000858	HDLBP (ENSPSNG00000000752) #12	SEPTIN2 (ENSPSNG00000000627) #13	ENSPSNG00000000565 #14	ENSPSNG00000000527 #14	STK25 (ENSPSNG00000000486) #15	BOK (ENSPSNG00000000444) #16	ENSPSNG00000000415 #18	THAP4 (ENSPSNG00000000375) #17	ATG4B (ENSPSNG00000000320) #19	DTYMK (ENSPSNG00000000294) #20	ING5 (ENSPSNG00000000271) #21	D2HGDH (ENSPSNG00000000233) #22	PDCD1 (ENSPSNG00000000211) #25	FAM240C (ENSPSNG00000000177)
Dolphin	MODERN SPECIES	2215																D2HGDH (ENSTTRG00000005745) #22	NEU4 (ENSTTRG00000005765) #24
Sperm whale	MODERN SPECIES	11	SNED1 (ENSPCTG00005012449) #7	MTERF4 (ENSPCTG00005013081) #8	PASK (ENSPCTG00005013139) #9	PPP1R7 (ENSPCTG00005013254)	ENSPCTG00005013491	HDLBP (ENSPCTG00005013527) #12	SEPTIN2 (ENSPCTG00005013946) #13	ENSPCTG00005014027 #14	ENSPCTG00005014275 #14	STK25 (ENSPCTG00005014400) #15	BOK (ENSPCTG00005014599) #16	THAP4 (ENSPCTG00005014654) #17	ATG4B (ENSPCTG00005014725) #19	DTYMK (ENSPCTG00005014797) #20	ING5 (ENSPCTG00005014848) #21	D2HGDH (ENSPCTG00005014900) #22	PDCD1 (ENSPCTG00005015179) #25
Blue whale	MODERN SPECIES	18	SNED1 (ENSBMSG00010009944) #7	MTERF4 (ENSBMSG00010009975) #8	ENSBMSG00010009987 #9	ENSBMSG00010010004	ENSBMSG00010010024	HDLBP (ENSBMSG00010010147) #12	SEPTIN2 (ENSBMSG00010010182) #13	ENSBMSG00010010208 #14	ENSBMSG00010010243 #14	STK25 (ENSBMSG00010010267) #15	BOK (ENSBMSG00010010287) #16	THAP4 (ENSBMSG00010010301) #17	ENSBMSG00010010330 #19	DTYMK (ENSBMSG00010010353) #20	ENSBMSG00010010363 #21	D2HGDH (ENSBMSG00010010370) #22	PDCD1 (ENSBMSG00010010423) #25	ENSBMSG00010010435
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Yarkand deer	MODERN SPECIES	12	AGXT (ENSCHYG00000023786)	MAB21L4 (ENSCHYG00000023894)	SNED1 (ENSCHYG00000024133) #7	PASK (ENSCHYG00000024901) #9	ENSCHYG00000025037	HDLBP (ENSCHYG00000025206) #12	ENSCHYG00000005057 #13	FARP2 (ENSCHYG00000005254) #14	STK25 (ENSCHYG00000005741) #15	ENSCHYG00000005861 #16	THAP4 (ENSCHYG00000005901) #17	ENSCHYG00000005951 #18	ATG4B (ENSCHYG00000005974) #19	DTYMK (ENSCHYG00000005997) #20	ING5 (ENSCHYG00000006024) #21	D2HGDH (ENSCHYG00000006084) #22	GAL3ST2 (ENSCHYG00000006191) #23	NEU4 (ENSCHYG00000006219) #24	PDCD1 (ENSCHYG00000006272) #25	ENSCHYG00000006359	ENSCHYG00000006368
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Siberian musk deer	MODERN SPECIES	1128	MAB21L4 (ENSMMSG00000006074)	SNED1 (ENSMMSG00000006119) #7	ENSMMSG00000006267 #8	PASK (ENSMMSG00000006289) #9	ENSMMSG00000006344	HDLBP (ENSMMSG00000006415) #12	ENSMMSG00000006500 #13	FARP2 (ENSMMSG00000006577) #14	STK25 (ENSMMSG00000006751) #15	BOK (ENSMMSG00000006957) #16	THAP4 (ENSMMSG00000007000) #17	ENSMMSG00000007062 #18	ATG4B (ENSMMSG00000007090) #19	DTYMK (ENSMMSG00000007140) #20	ING5 (ENSMMSG00000007156) #21	D2HGDH (ENSMMSG00000007189) #22	GAL3ST2 (ENSMMSG00000007246) #23	NEU4 (ENSMMSG00000007270) #24	PDCD1 (ENSMMSG00000007315) #25	ENSMMSG00000007349
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Caprinae	ANCESTRAL SPECIES	2	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00510000055442
Goat	DUPLICATION
Goat	MODERN SPECIES	126																ENSCHIG00000006670 #22	GAL3ST2 (ENSCHIG00000011341) #23	NEU4 (ENSCHIG00000016718) #24	ENSCHIG00000010033 #25
Goat	MODERN SPECIES	22	MAB21L4 (ENSCHIG00000026979)	SNED1 (ENSCHIG00000021345) #7	MTERF4 (ENSCHIG00000022070) #8	PASK (ENSCHIG00000007156) #9	ENSCHIG00000012347	HDLBP (ENSCHIG00000022364) #12	SEPTIN2 (ENSCHIG00000026614) #13	FARP2 (ENSCHIG00000027255) #14	STK25 (ENSCHIG00000021875) #15	BOK (ENSCHIG00000026381) #16	ENSCHIG00000014554 #18	THAP4 (ENSCHIG00000020478) #17	ATG4B (ENSCHIG00000018105) #19	DTYMK (ENSCHIG00000024323) #20	ING5 (ENSCHIG00000013163) #21	ENSCHIG00000019983 #22	ENSCHIG00000001465	ENSCHIG00000010191
Rambouillet Sheep	MODERN SPECIES		GPR35 (ENSOARG00020000975)	ENSOARG00020000955	KIF1A (ENSOARG00020000824)	AGXT (ENSOARG00020000775)	MAB21L4 (ENSOARG00020000754)	CROCC2 (ENSOARG00020000704)	SNED1 (ENSOARG00020000363) #7	ENSOARG00020000194	HDLBP (ENSOARG00020000111) #12	SEPTIN2 (ENSOARG00020000087) #13	STK25 (ENSOARG00020000074) #15	THAP4 (ENSOARG00020000069) #17	ATG4B (ENSOARG00020000066) #19	DTYMK (ENSOARG00020000065) #20	ING5 (ENSOARG00020000064) #21	D2HGDH (ENSOARG00020000060) #22	GAL3ST2 (ENSOARG00020000059) #23	NEU4 (ENSOARG00020000055) #24	ENSOARG00020000053 #25	FAM240C (ENSOARG00020000042)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170.a #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Bos	ANCESTRAL SPECIES		ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Bos_b	ANCESTRAL SPECIES	45	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442	ENSGT00940000162350.b.b
Hybrid Bos Indicus	MODERN SPECIES	22	AGXT (ENSBIXG00005019708)	MAB21L4 (ENSBIXG00005019680)	CROCC2 (ENSBIXG00005019657)	SNED1 (ENSBIXG00005019613) #7	PASK (ENSBIXG00005019482) #9	ENSBIXG00005019419	HDLBP (ENSBIXG00005019344) #12	SEPTIN2 (ENSBIXG00005019099) #13	FARP2 (ENSBIXG00005018965) #14	STK25 (ENSBIXG00005018864) #15	BOK (ENSBIXG00005018673) #16	THAP4 (ENSBIXG00005018636) #17	ATG4B (ENSBIXG00005018568) #19	DTYMK (ENSBIXG00005003000) #20	ING5 (ENSBIXG00005018529) #21	D2HGDH (ENSBIXG00005018508) #22	GAL3ST2 (ENSBIXG00005018473) #23	NEU4 (ENSBIXG00005018451) #24	ENSBIXG00005018415 #25	ENSBIXG00005018390	FAM240C (ENSBIXG00005002972)	ENSBIXG00005018344
Cow	MODERN SPECIES	22	MAB21L4 (ENSBTAG00000012374)	CROCC2 (ENSBTAG00000005168)	SNED1 (ENSBTAG00000014132) #7	MTERF4 (ENSBTAG00000000784) #8	PASK (ENSBTAG00000000785) #9	PPP1R7 (ENSBTAG00000000789)	HDLBP (ENSBTAG00000004315) #12	SEPTIN2 (ENSBTAG00000002608) #13	FARP2 (ENSBTAG00000013110) #14	STK25 (ENSBTAG00000009676) #15	BOK (ENSBTAG00000008711) #16	THAP4 (ENSBTAG00000013253) #17	ATG4B (ENSBTAG00000015401) #19	DTYMK (ENSBTAG00000015408) #20	ING5 (ENSBTAG00000009123) #21	D2HGDH (ENSBTAG00000002847) #22	GAL3ST2 (ENSBTAG00000009093) #23	NEU4 (ENSBTAG00000014833) #24	PDCD1 (ENSBTAG00000011543) #25	RTP5 (ENSBTAG00000040598)	ENSBTAG00000054669	ENSBTAG00000030892
Bos_a	ANCESTRAL SPECIES	65	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Domestic yak	MODERN SPECIES	22	ENSBGRG00000000737	SNED1 (ENSBGRG00000000812) #7	MTERF4 (ENSBGRG00000000960) #8	PASK (ENSBGRG00000001050) #9	PPP1R7 (ENSBGRG00000001494) #10	HDLBP (ENSBGRG00000001532) #12	SEPTIN2 (ENSBGRG00000001628) #13	ENSBGRG00000001659 #14	ENSBGRG00000001709 #14	STK25 (ENSBGRG00000001737) #15	BOK (ENSBGRG00000001796) #16	THAP4 (ENSBGRG00000001809) #17	ATG4B (ENSBGRG00000001839) #19	DTYMK (ENSBGRG00000001869) #20	ING5 (ENSBGRG00000001892) #21	D2HGDH (ENSBGRG00000001912) #22	GAL3ST2 (ENSBGRG00000001946) #23	NEU4 (ENSBGRG00000001960) #24	PDCD1 (ENSBGRG00000001972) #25	ENSBGRG00000002010	ENSBGRG00000002019	FAM240C (ENSBGRG00000002034)	ENSBGRG00000002046
Wild yak	MODERN SPECIES	1292	MAB21L4 (ENSBMUG00000010834)	ENSBMUG00000010864	SNED1 (ENSBMUG00000011079) #7	MTERF4 (ENSBMUG00000011109) #8	PASK (ENSBMUG00000011286) #9	ENSBMUG00000011436	HDLBP (ENSBMUG00000011512) #12	SEPTIN2 (ENSBMUG00000011562) #13	ENSBMUG00000011602 #14	STK25 (ENSBMUG00000011663) #15	BOK (ENSBMUG00000011678) #16	ENSBMUG00000011686 #17	ATG4B (ENSBMUG00000011703) #19	DTYMK (ENSBMUG00000011726) #20	ING5 (ENSBMUG00000011751) #21	D2HGDH (ENSBMUG00000011772) #22	GAL3ST2 (ENSBMUG00000011800) #23	PDCD1 (ENSBMUG00000011821) #25	ENSBMUG00000011839	FAM240C (ENSBMUG00000011856)
American bison	MODERN SPECIES	2779				HDLBP (ENSBBBG00000025205) #12	SEPTIN2 (ENSBBBG00000024929) #13	ENSBBBG00000007729 #14	ENSBBBG00000024830 #14	ENSBBBG00000006812 #15	STK25 (ENSBBBG00000008224) #15	BOK (ENSBBBG00000007724) #16	ENSBBBG00000008217 #17	ENSBBBG00000006496 #18	ATG4B (ENSBBBG00000024719) #19	DTYMK (ENSBBBG00000024700) #20	ING5 (ENSBBBG00000006484) #21	D2HGDH (ENSBBBG00000000175) #22
Camelidae	ANCESTRAL SPECIES	87	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Arabian camel	MODERN SPECIES	31	ENSCDRG00005021762	ENSCDRG00005021764 #7	MTERF4 (ENSCDRG00005021768) #8	PASK (ENSCDRG00005021771) #9	ENSCDRG00005021780	HDLBP (ENSCDRG00005021789) #12	SEPTIN2 (ENSCDRG00005021804) #13	ENSCDRG00005021815 #14	ENSCDRG00005000066 #14	STK25 (ENSCDRG00005000090) #15	ENSCDRG00005000190 #16	ENSCDRG00005000232 #17	ATG4B (ENSCDRG00005000273) #19	ENSCDRG00005000350 #20	ING5 (ENSCDRG00005000394) #21	D2HGDH (ENSCDRG00005000420) #22	NEU4 (ENSCDRG00005000455) #24	PDCD1 (ENSCDRG00005000464) #25	ENSCDRG00005000478	FAM240C (ENSCDRG00005000494)
Alpaca	MODERN SPECIES	2293																ENSVPAG00000010863 #22
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00910000148484	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00910000148484	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.b #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Ursus	ANCESTRAL SPECIES	12	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.b #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Polar bear	MODERN SPECIES	169	CROCC2 (ENSUMAG00000010789)	ENSUMAG00000010780 #7	MTERF4 (ENSUMAG00000010771) #8	PASK (ENSUMAG00000010599) #9	ENSUMAG00000010567	ANO7 (ENSUMAG00000010556) #11	HDLBP (ENSUMAG00000010539) #12	SEPTIN2 (ENSUMAG00000010525) #13	FARP2 (ENSUMAG00000010519) #14	STK25 (ENSUMAG00000010503) #15	ENSUMAG00000010497 #16	ENSUMAG00000010490 #17	ATG4B (ENSUMAG00000010475) #19	DTYMK (ENSUMAG00000010470) #20	ING5 (ENSUMAG00000010455) #21	D2HGDH (ENSUMAG00000010446) #22	ENSUMAG00000010440 #23	PDCD1 (ENSUMAG00000010435) #25	ENSUMAG00000010426	ENSUMAG00000010313
American black bear	MODERN SPECIES	397								FARP2 (ENSUAMG00000008202) #14	STK25 (ENSUAMG00000008482) #15	BOK (ENSUAMG00000008483) #16	ENSUAMG00000008484 #17	ENSUAMG00000008485 #19	ENSUAMG00000008486 #19	DTYMK (ENSUAMG00000008487) #20	ING5 (ENSUAMG00000008488) #21	D2HGDH (ENSUAMG00000008489) #22	GAL3ST2 (ENSUAMG00000008490) #23	NEU4 (ENSUAMG00000008492) #24	PDCD1 (ENSUAMG00000008493) #25	ENSUAMG00000008494
Giant Panda	MODERN SPECIES	11	AGXT (ENSAMEG00000016700)	MAB21L4 (ENSAMEG00000016697)	CROCC2 (ENSAMEG00000016680)	SNED1 (ENSAMEG00000016675) #7	MTERF4 (ENSAMEG00000016670) #8	PASK (ENSAMEG00000016638) #9	ANO7 (ENSAMEG00000016590) #11	HDLBP (ENSAMEG00000016552) #12	ENSAMEG00000028718 #16	ENSAMEG00000023910 #13	FARP2 (ENSAMEG00000016513) #14	STK25 (ENSAMEG00000016473) #15	ATG4B (ENSAMEG00000016425) #19	ENSAMEG00000016421 #20	ING5 (ENSAMEG00000016412) #21	D2HGDH (ENSAMEG00000016397) #22	GAL3ST2 (ENSAMEG00000023677) #23	NEU4 (ENSAMEG00000016386) #24	PDCD1 (ENSAMEG00000016373) #25	ENSAMEG00000027207	ENSAMEG00000031114
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442	ENSGT00390000015050	ENSGT00940000157541	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055
American mink	MODERN SPECIES	275	ENSNVIG00000017789 #7	MTERF4 (ENSNVIG00000017805) #8	PASK (ENSNVIG00000017829) #9	ENSNVIG00000017870	ANO7 (ENSNVIG00000017977) #11	HDLBP (ENSNVIG00000018029) #12	SEPTIN2 (ENSNVIG00000018096) #13	FARP2 (ENSNVIG00000018158) #14	STK25 (ENSNVIG00000018289) #15	BOK (ENSNVIG00000018340) #16	ENSNVIG00000018353 #17	ENSNVIG00000018363 #17	ATG4B (ENSNVIG00000018383) #19	DTYMK (ENSNVIG00000018398) #20	ING5 (ENSNVIG00000018407) #21	D2HGDH (ENSNVIG00000018435) #22	GAL3ST2 (ENSNVIG00000018436) #23	NEU4 (ENSNVIG00000018459) #24	PDCD1 (ENSNVIG00000018495) #25	CB085 (ENSNVIG00000018518)	FAM240C (ENSNVIG00000018529)	ENSNVIG00000018582	ENSNVIG00000020114	MMADHC (ENSNVIG00000020125)
Ferret	MODERN SPECIES	173	SNED1 (ENSMPUG00000000147) #7	ENSMPUG00000000152	MTERF4 (ENSMPUG00000000155) #8	PASK (ENSMPUG00000000158) #9	ANO7 (ENSMPUG00000000160) #11	HDLBP (ENSMPUG00000000163) #12	SEPTIN2 (ENSMPUG00000000166) #13	FARP2 (ENSMPUG00000000175) #14	STK25 (ENSMPUG00000000176) #15	ENSMPUG00000000178	BOK (ENSMPUG00000000179) #16	THAP4 (ENSMPUG00000000182) #17	ATG4B (ENSMPUG00000000187) #19	DTYMK (ENSMPUG00000000189) #20	ING5 (ENSMPUG00000000190) #21	D2HGDH (ENSMPUG00000000191) #22	GAL3ST2 (ENSMPUG00000000193) #23	NEU4 (ENSMPUG00000000195) #24	PDCD1 (ENSMPUG00000000197) #25	ENSMPUG00000000200	ENSMPUG00000000203	MMADHC (ENSMPUG00000000323)	ENSMPUG00000000330	RND3 (ENSMPUG00000000331)	RBM43 (ENSMPUG00000000342)	NMI (ENSMPUG00000000344)	TNFAIP6 (ENSMPUG00000000370)	RIF1 (ENSMPUG00000000371)	NEB (ENSMPUG00000000376)	ARL5A (ENSMPUG00000000396)	CACNB4 (ENSMPUG00000000400)
Canidae	ANCESTRAL SPECIES	20	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098.ib.b #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT00940000160730 #7	ENSGT00390000000703.h.lb.b	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098.ib.b #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Dog	MODERN SPECIES	17	SNED1 (ENSCAFG00845021016) #7	ENSCAFG00845021865	ENSCAFG00845021901 #8	PASK (ENSCAFG00845021974) #9	PPP1R7 (ENSCAFG00845022243) #10	ANO7 (ENSCAFG00845022518) #11	HDLBP (ENSCAFG00845022763) #12	SEPTIN2 (ENSCAFG00845023027) #13	FARP2 (ENSCAFG00845023180) #14	STK25 (ENSCAFG00845023492) #15	ENSCAFG00845023631 #16	THAP4 (ENSCAFG00845023699) #17	ATG4B (ENSCAFG00845023776) #19	ENSCAFG00845023877 #20	ING5 (ENSCAFG00845024016) #21	D2HGDH (ENSCAFG00845024104) #22	NEU4 (ENSCAFG00845024166) #24	PDCD1 (ENSCAFG00845024308) #25	ENSCAFG00845024371
Dingo	MODERN SPECIES	304	SNED1 (ENSCAFG00020024966) #7	ENSCAFG00020025030	ENSCAFG00020025033 #8	PASK (ENSCAFG00020025046) #9	ENSCAFG00020025077	ANO7 (ENSCAFG00020025079) #11	HDLBP (ENSCAFG00020025089) #12	ENSCAFG00020025094 #13	FARP2 (ENSCAFG00020025110) #14	STK25 (ENSCAFG00020025119) #15	BOK (ENSCAFG00020025122) #16	THAP4 (ENSCAFG00020025129) #17	ATG4B (ENSCAFG00020025174) #19	DTYMK (ENSCAFG00020025418) #20	ING5 (ENSCAFG00020025420) #21	D2HGDH (ENSCAFG00020025422) #22	GAL3ST2 (ENSCAFG00020025423) #23	NEU4 (ENSCAFG00020025425) #24	PDCD1 (ENSCAFG00020025435) #25	ENSCAFG00020025437
Red fox	MODERN SPECIES	253	AGXT (ENSVVUG00000022967)	MAB21L4 (ENSVVUG00000022960)	ENSVVUG00000022955	SNED1 (ENSVVUG00000022810) #7	PASK (ENSVVUG00000022805) #9	PPP1R7 (ENSVVUG00000022804)	HDLBP (ENSVVUG00000022797) #12	SEPT2 (ENSVVUG00000022793) #13	ENSVVUG00000022790 #14	ENSVVUG00000022785 #14	STK25 (ENSVVUG00000022783) #15	ENSVVUG00000022782 #16	THAP4 (ENSVVUG00000022780) #17	ATG4B (ENSVVUG00000022778) #19	DTYMK (ENSVVUG00000022764) #20	D2HGDH (ENSVVUG00000022757) #22	GAL3ST2 (ENSVVUG00000022752) #23	ENSVVUG00000022750 #24	ENSVVUG00000022748 #25	RTP5 (ENSVVUG00000022746)
Felidae	ANCESTRAL SPECIES	15	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00910000148484	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Panthera	ANCESTRAL SPECIES	9	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Tiger	MODERN SPECIES	218	AGXT (ENSPTIG00000016856)	MTERF4 (ENSPTIG00000012832) #8	PASK (ENSPTIG00000006193) #9	PPP1R7 (ENSPTIG00000020796) #10	ANO7 (ENSPTIG00000017939) #11	HDLBP (ENSPTIG00000009328) #12	SEPTIN2 (ENSPTIG00000004202) #13	FARP2 (ENSPTIG00000018255) #14	STK25 (ENSPTIG00000017429) #15	BOK (ENSPTIG00000016435) #16	ENSPTIG00000015480 #17	ENSPTIG00000015344	ENSPTIG00000015107 #19	DTYMK (ENSPTIG00000014764) #20	ING5 (ENSPTIG00000013252) #21	D2HGDH (ENSPTIG00000012686) #22	NEU4 (ENSPTIG00000012287) #24	ENSPTIG00000011932
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00910000148484	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00900000143170 #18	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
leopard	MODERN SPECIES	12	MAB21L4 (ENSPPRG00000006592)	CROCC2 (ENSPPRG00000008256)	SNED1 (ENSPPRG00000013999) #7	MTERF4 (ENSPPRG00000016102) #8	PASK (ENSPPRG00000001870) #9	PPP1R7 (ENSPPRG00000004627) #10	HDLBP (ENSPPRG00000010215) #12	SEPTIN2 (ENSPPRG00000012154) #13	FARP2 (ENSPPRG00000018957) #14	STK25 (ENSPPRG00000023379) #15	BOK (ENSPPRG00000023173) #16	THAP4 (ENSPPRG00000001382) #17	ATG4B (ENSPPRG00000005113) #19	DTYMK (ENSPPRG00000005334) #20	ING5 (ENSPPRG00000006207) #21	D2HGDH (ENSPPRG00000007202) #22	GAL3ST2 (ENSPPRG00000007375) #23	NEU4 (ENSPPRG00000008112) #24	PDCD1 (ENSPPRG00000008342) #25	ENSPPRG00000008537	FAM240C (ENSPPRG00000008747)
lion	MODERN SPECIES	8	ENSPLOG00000012697	PPP1R7 (ENSPLOG00000012498) #10	ANO7 (ENSPLOG00000012088) #11	HDLBP (ENSPLOG00000011820) #12	SEPTIN2 (ENSPLOG00000011660) #13	ENSPLOG00000011615	ENSPLOG00000011349 #14	ENSPLOG00000011251 #14	STK25 (ENSPLOG00000011112) #15	BOK (ENSPLOG00000011035) #16	ENSPLOG00000011021 #18	THAP4 (ENSPLOG00000010941) #17	ATG4B (ENSPLOG00000010727) #19	DTYMK (ENSPLOG00000010691) #20	ING5 (ENSPLOG00000010655) #21	D2HGDH (ENSPLOG00000010624) #22	GAL3ST2 (ENSPLOG00000010582) #23	NEU4 (ENSPLOG00000010542) #24	PDCD1 (ENSPLOG00000010510) #25	ENSPLOG00000010473	FAM240C (ENSPLOG00000010435)
Cat	MODERN SPECIES	239	SNED1 (ENSFCAG00000010450) #7	MTERF4 (ENSFCAG00000010451) #8	PASK (ENSFCAG00000000959) #9	PPP1R7 (ENSFCAG00000010452)	ANO7 (ENSFCAG00000010453) #11	HDLBP (ENSFCAG00000010455) #12	SEPTIN2 (ENSFCAG00000002797) #13	FARP2 (ENSFCAG00000002801) #14	STK25 (ENSFCAG00000002803) #15	BOK (ENSFCAG00000014277) #16	THAP4 (ENSFCAG00000014280) #17	ENSFCAG00000046954 #18	ATG4B (ENSFCAG00000014281) #19	DTYMK (ENSFCAG00000014282) #20	ING5 (ENSFCAG00000043477) #21	D2HGDH (ENSFCAG00000014284) #22	GAL3ST2 (ENSFCAG00000042426) #23	NEU4 (ENSFCAG00000004992) #24	PDCD1 (ENSFCAG00000014287) #25	RTP5 (ENSFCAG00000048136)	FAM240C (ENSFCAG00000042944)
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732	ENSGT00510000055442
Greater horseshoe bat	MODERN SPECIES	26	MAB21L4 (ENSRFEG00010001650)	SNED1 (ENSRFEG00010001292) #7	MTERF4 (ENSRFEG00010001122) #8	PASK (ENSRFEG00010001084) #9	ENSRFEG00010001029	ANO7 (ENSRFEG00010001001) #11	ENSRFEG00010000976 #12	SEPTIN2 (ENSRFEG00010000923) #13	FARP2 (ENSRFEG00010000873) #14	STK25 (ENSRFEG00010000825) #15	BOK (ENSRFEG00010000801) #16	THAP4 (ENSRFEG00010000777) #17	ATG4B (ENSRFEG00010000748) #19	DTYMK (ENSRFEG00010000727) #20	ING5 (ENSRFEG00010000702) #21	D2HGDH (ENSRFEG00010000683) #22	GAL3ST2 (ENSRFEG00010000668) #23	NEU4 (ENSRFEG00010000653) #24	PDCD1 (ENSRFEG00010000631) #25	ENSRFEG00010000618	FAM240C (ENSRFEG00010000608)
Microbat	MODERN SPECIES	942	SNED1 (ENSMLUG00000012911) #7	MTERF4 (ENSMLUG00000005579) #8	PASK (ENSMLUG00000005589) #9	ENSMLUG00000005606	ANO7 (ENSMLUG00000005611) #11	HDLBP (ENSMLUG00000005628) #12	SEPTIN2 (ENSMLUG00000007108) #13	FARP2 (ENSMLUG00000007123) #14	ENSMLUG00000022825	STK25 (ENSMLUG00000007158) #15	BOK (ENSMLUG00000028632) #16	THAP4 (ENSMLUG00000007192) #17	ATG4B (ENSMLUG00000028269) #19	DTYMK (ENSMLUG00000028996) #20	ING5 (ENSMLUG00000029235) #21	D2HGDH (ENSMLUG00000027975) #22	GAL3ST2 (ENSMLUG00000003372) #23	NEU4 (ENSMLUG00000003374) #24	PDCD1 (ENSMLUG00000009623) #25	ENSMLUG00000009638	NUP35 (ENSMLUG00000013154)	DUSP19 (ENSMLUG00000013149)	NCKAP1 (ENSMLUG00000011345)	ENSMLUG00000030095	ENSMLUG00000027215	DNAJC10 (ENSMLUG00000000680)	PDE1A (ENSMLUG00000009939)	ENSMLUG00000009929	ITPRID2 (ENSMLUG00000011724)	NEUROD1 (ENSMLUG00000025259)	ENSMLUG00000014227
Megabat	MODERN SPECIES	2095													ATG4B (ENSPVAG00000007021) #19	DTYMK (ENSPVAG00000007023) #20	ING5 (ENSPVAG00000007024) #21	D2HGDH (ENSPVAG00000007025) #22
Equus	ANCESTRAL SPECIES	15	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059.f #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000163732
Horse	MODERN SPECIES	27	MAB21L4 (ENSECAG00000023443)	CROCC2 (ENSECAG00000023710)	SNED1 (ENSECAG00000024612) #7	MTERF4 (ENSECAG00000011622) #8	PASK (ENSECAG00000011785) #9	PPP1R7 (ENSECAG00000017246) #11	HDLBP (ENSECAG00000012829) #12	SEPTIN2 (ENSECAG00000017553) #13	FARP2 (ENSECAG00000008144) #14	STK25 (ENSECAG00000017650) #15	BOK (ENSECAG00000000238) #16	THAP4 (ENSECAG00000000252) #17	ATG4B (ENSECAG00000006659) #19	ENSECAG00000047800 #20	ING5 (ENSECAG00000014401) #21	D2HGDH (ENSECAG00000018063) #22	GAL3ST2 (ENSECAG00000021338) #23	NEU4 (ENSECAG00000021892) #24	PDCD1 (ENSECAG00000023275) #25	ENSECAG00000037242	ENSECAG00000033624	ENSECAG00000058925	ENSECAG00000041546	USP18 (ENSECAG00000000284)	TUBA8 (ENSECAG00000013982)	PEX26 (ENSECAG00000014438)	MICAL3 (ENSECAG00000004993)	BID (ENSECAG00000006592)	BCL2L13 (ENSECAG00000010335)	ATP6V1E1 (ENSECAG00000016487)	SLC25A18 (ENSECAG00000008033)
Donkey	MODERN SPECIES	10	SNED1 (ENSEASG00005008171) #7	MTERF4 (ENSEASG00005008185) #8	ENSEASG00005037592 #9	ENSEASG00005008227	ENSEASG00005025357 #11	ENSEASG00005008231 #11	HDLBP (ENSEASG00005008249) #12	SEPTIN2 (ENSEASG00005008254) #13	FARP2 (ENSEASG00005008264) #14	STK25 (ENSEASG00005008279) #15	BOK (ENSEASG00005008290) #16	THAP4 (ENSEASG00005008293) #17	ATG4B (ENSEASG00005008298) #19	ENSEASG00005008301 #20	ING5 (ENSEASG00005008302) #21	D2HGDH (ENSEASG00005008304) #22	GAL3ST2 (ENSEASG00005023877) #23	NEU4 (ENSEASG00005027161) #24	PDCD1 (ENSEASG00005008310) #25	ENSEASG00005038563	ENSEASG00005008365	ENSEASG00005026883	ENSEASG00005034945	ENSEASG00005031656	ENSEASG00005029923
Eulipotyphla	ANCESTRAL SPECIES	2285																ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23
Hedgehog	MODERN SPECIES	7351																ENSEEUG00000012314 #22
Common shrew	MODERN SPECIES	5761																ENSSARG00000007396 #22	ENSSARG00000007446 #23
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00550000075086 #22
Afrotheria	ANCESTRAL SPECIES																	ENSGT00550000075086 #22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00550000075086 #22
Hyrax	MODERN SPECIES	6065																ENSPCAG00000010584 #22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000161309	ENSGT00940000161858	ENSGT00950000183084.b.b	ENSGT00510000047914.b	ENSGT00940000156311	ENSGT00940000156022.b	ENSGT00390000001652.f.b	ENSGT00950000183153.c.b.a.a	ENSGT00940000159593	ENSGT00940000155387	ENSGT00730000111162	ENSGT00390000006126
Opossum	MODERN SPECIES	6	CLDN1 (ENSMODG00000047456)	CLDN16 (ENSMODG00000015088)	IL1RAP (ENSMODG00000015095)	ENSMODG00000050076	OSTN (ENSMODG00000015103)	CCDC50 (ENSMODG00000015112)	FGF12 (ENSMODG00000015116)	ENSMODG00000015119	PLAAT1 (ENSMODG00000015123)	ATP13A4 (ENSMODG00000015137)	OPA1 (ENSMODG00000015156)	ATG4B (ENSMODG00000008658) #19	ENSMODG00000039725 #20	ENSMODG00000008649 #20	ING5 (ENSMODG00000008639) #21	D2HGDH (ENSMODG00000008616) #22	GAL3ST2 (ENSMODG00000008603) #23	NEU4 (ENSMODG00000037347) #24	ENSMODG00000029268 #25	ENSMODG00000008563	RTP1 (ENSMODG00000008542)	ENSMODG00000043766	MASP1 (ENSMODG00000008535)	SST (ENSMODG00000008503)	ENSMODG00000045616	ENSMODG00000042478	ENSMODG00000016079 #17	BOK (ENSMODG00000016075) #16	FARP2 (ENSMODG00000016044) #14	SEPTIN2 (ENSMODG00000016041) #13	HDLBP (ENSMODG00000016033) #12
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000162454	ENSGT00940000161309	ENSGT00940000161858	ENSGT00950000183084.b.b	ENSGT00510000047914.b	ENSGT00940000156311	ENSGT00940000156022.b	ENSGT00390000001652.f.b	ENSGT00950000183153.c.b.a.a	ENSGT00940000159593	ENSGT00940000155387	ENSGT00730000111162
Diprotodontia	ANCESTRAL SPECIES	17	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000162454	ENSGT00940000161309	ENSGT00940000161858	ENSGT00950000183084.b.b	ENSGT00510000047914.b	ENSGT00940000156311	ENSGT00940000156022.b	ENSGT00390000001652.f.b	ENSGT00950000183153.c.b.a.a	ENSGT00940000159593	ENSGT00940000155387	ENSGT00730000111162
Diprotodontia_a	ANCESTRAL SPECIES	19	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000158551.k.b #10	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT00390000013662 #25	ENSGT00940000162454	ENSGT00940000161309	ENSGT00940000161858	ENSGT00950000183084.b.b	ENSGT00510000047914.b	ENSGT00940000156311	ENSGT00940000156022.b	ENSGT00390000001652.f.b	ENSGT00950000183153.c.b.a.a	ENSGT00940000159593	ENSGT00940000155387	ENSGT00730000111162
koala	MODERN SPECIES	33	MAB21L4 (ENSPCIG00000027355)	ENSPCIG00000027354	SNED1 (ENSPCIG00000015443) #7	ENSPCIG00000015434 #8	ENSPCIG00000015415 #9	PPP1R7 (ENSPCIG00000015402) #10	HDLBP (ENSPCIG00000015375) #12	SEPTIN2 (ENSPCIG00000005866) #13	FARP2 (ENSPCIG00000005873) #14	STK25 (ENSPCIG00000005881) #15	BOK (ENSPCIG00000016583) #16	THAP4 (ENSPCIG00000016578) #17	ATG4B (ENSPCIG00000016576) #19	DTYMK (ENSPCIG00000016574) #20	ING5 (ENSPCIG00000016570) #21	D2HGDH (ENSPCIG00000016567) #22	GAL3ST2 (ENSPCIG00000032948) #23	ENSPCIG00000031792 #24	ENSPCIG00000025273 #25	ENSPCIG00000025271	MROH2A (ENSPCIG00000025265)	RTP1 (ENSPCIG00000025264)	ENSPCIG00000025263	SST (ENSPCIG00000025262)	BCL6 (ENSPCIG00000025261)	ENSPCIG00000025259	LPP (ENSPCIG00000037471)	TPRG1 (ENSPCIG00000003993)	TP63 (ENSPCIG00000025324)
Common wonbat	MODERN SPECIES	1046	SNED1 (ENSVURG00010020936) #7	ENSVURG00010021080 #8	ENSVURG00010021082 #9	PPP1R7 (ENSVURG00010021089) #10	HDLBP (ENSVURG00010021098) #12	SEPTIN2 (ENSVURG00010021113) #13	FARP2 (ENSVURG00010021133) #14	ENSVURG00010021155	ENSVURG00010021157	STK25 (ENSVURG00010021165) #15	BOK (ENSVURG00010021188) #16	THAP4 (ENSVURG00010021195) #17	ATG4B (ENSVURG00010021203) #19	DTYMK (ENSVURG00010021210) #20	ING5 (ENSVURG00010021216) #21	D2HGDH (ENSVURG00010021224) #22	ENSVURG00010021230	GAL3ST2 (ENSVURG00010021234) #23	NEU4 (ENSVURG00010021251) #24	ENSVURG00010021355 #25	MROH2A (ENSVURG00010021359)	RTP1 (ENSVURG00010021374)	ENSVURG00010021379
Wallaby	MODERN SPECIES	8741																D2HGDH (ENSMEUG00000012733) #22
Tasmanian devil	MODERN SPECIES	2	MAB21L4 (ENSSHAG00000009675)	ENSSHAG00000010228	SNED1 (ENSSHAG00000011201) #7	ENSSHAG00000011570 #9	PPP1R7 (ENSSHAG00000011977) #10	ANO7 (ENSSHAG00000012152) #11	HDLBP (ENSSHAG00000012422) #12	SEPTIN2 (ENSSHAG00000012877) #13	FARP2 (ENSSHAG00000013204) #14	STK25 (ENSSHAG00000013625) #15	BOK (ENSSHAG00000021893) #16	THAP4 (ENSSHAG00000002590) #17	ENSSHAG00000025437 #20	ATG4B (ENSSHAG00000025606) #19	ING5 (ENSSHAG00000021102) #21	D2HGDH (ENSSHAG00000016109) #22	GAL3ST2 (ENSSHAG00000015929) #23	ENSSHAG00000015765 #24	ENSSHAG00000022224 #25	ENSSHAG00000015591	ENSSHAG00000015438	ENSSHAG00000015412	MASP1 (ENSSHAG00000015135)	SST (ENSSHAG00000028585)	ENSSHAG00000029604	LPP (ENSSHAG00000022243)	TPRG1 (ENSSHAG00000011287)	TP63 (ENSSHAG00000007507)	P3H2 (ENSSHAG00000006714)	CLDN1 (ENSSHAG00000001180)	CLDN16 (ENSSHAG00000028888)
Platypus	MODERN SPECIES	18	ENSOANG00000015608	SNED1 (ENSOANG00000015610) #7	ENSOANG00000037263 #8	ENSOANG00000015612 #9	PPP1R7 (ENSOANG00000011761) #10	ANO7 (ENSOANG00000011760) #11	HDLBP (ENSOANG00000011759) #12	SEPTIN2 (ENSOANG00000011758) #13	FARP2 (ENSOANG00000011757) #14	STK25 (ENSOANG00000011756) #15	BOK (ENSOANG00000005633) #16	THAP4 (ENSOANG00000009842) #17	ATG4B (ENSOANG00000008758) #19	DTYMK (ENSOANG00000008759) #20	ING5 (ENSOANG00000049910) #21	D2HGDH (ENSOANG00000000857) #22	ENSOANG00000002250 #23	ENSOANG00000000858 #23	ENSOANG00000000861 #24	ENSOANG00000031433 #25	MROH2A (ENSOANG00000000863)	RTP1 (ENSOANG00000000868)	MASP1 (ENSOANG00000000869)	SST (ENSOANG00000000871)	BCL6 (ENSOANG00000000872)	LPP (ENSOANG00000013793)	TPRG1 (ENSOANG00000013794)	TP63 (ENSOANG00000013795)	P3H2 (ENSOANG00000013797)	CLDN1 (ENSOANG00000013798)	CLDN16 (ENSOANG00000004452)
Sauria	ANCESTRAL SPECIES	9	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Lepidosauria	ANCESTRAL SPECIES	48	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00990000204467	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Laterata	ANCESTRAL SPECIES		ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00990000204467	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Common wall lizard	MODERN SPECIES	13	PASK (ENSPMRG00000015181) #9	ENSPMRG00000015155	ANO7 (ENSPMRG00000015095) #11	ENSPMRG00000015072	HDLBP (ENSPMRG00000015042) #12	FARP2 (ENSPMRG00000015029) #14	ENSPMRG00000015016 #14	STK25 (ENSPMRG00000015007) #15	BOK (ENSPMRG00000015001) #16	ENSPMRG00000014998	THAP4 (ENSPMRG00000014991) #17	ATG4B (ENSPMRG00000014984) #19	ENSPMRG00000014974 #20	ENSPMRG00000014971 #20	ING5 (ENSPMRG00000014968) #21	D2HGDH (ENSPMRG00000014960) #22	NEU4 (ENSPMRG00000014942) #24	TM4SF19 (ENSPMRG00000014930)	UBXN7 (ENSPMRG00000014921)	RNF168 (ENSPMRG00000014916)	SMCO1 (ENSPMRG00000014912)	WDR53 (ENSPMRG00000014908)	FBXO45 (ENSPMRG00000014905)	NRROS (ENSPMRG00000014901)	CEP19 (ENSPMRG00000014897)	PIGX (ENSPMRG00000014891)	PAK2 (ENSPMRG00000014879)	ENSPMRG00000014864	ENSPMRG00000014857 #23	ENSPMRG00000014851	RAB6B (ENSPMRG00000014846)
Argentine black and white tegu	MODERN SPECIES	19	SNED1 (ENSSMRG00000001025) #7	MTERF4 (ENSSMRG00000001006) #8	PASK (ENSSMRG00000000933) #9	ENSSMRG00000000907	ANO7 (ENSSMRG00000000753) #11	HDLBP (ENSSMRG00000000699) #12	SEPTIN2 (ENSSMRG00000000674) #13	FARP2 (ENSSMRG00000000645) #14	STK25 (ENSSMRG00000000539) #15	BOK (ENSSMRG00000000487) #16	ENSSMRG00000000469	THAP4 (ENSSMRG00000000460) #17	ATG4B (ENSSMRG00000000388) #19	DTYMK (ENSSMRG00000000297) #20	ING5 (ENSSMRG00000000278) #21	D2HGDH (ENSSMRG00000000238) #22	GAL3ST2 (ENSSMRG00000000236) #23	NEU4 (ENSSMRG00000000142) #24	TM4SF19 (ENSSMRG00000000072)	UBXN7 (ENSSMRG00000000052)	ENSSMRG00000000036	SMCO1 (ENSSMRG00000022211)	WDR53 (ENSSMRG00000022210)	FBXO45 (ENSSMRG00000022209)	NRROS (ENSSMRG00000022208)	PIGX (ENSSMRG00000022207)	CEP19 (ENSSMRG00000022206)	PAK2 (ENSSMRG00000022166)	ENSSMRG00000022165	ENSSMRG00000022164 #23	ENSSMRG00000022162
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00990000204467	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00990000204467	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00990000204467	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00990000204467	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Eastern brown snake	MODERN SPECIES	16	SNED1 (ENSPTXG00000000707) #7	MTERF4 (ENSPTXG00000000689) #8	ENSPTXG00000000683 #9	ENSPTXG00000000679	ANO7 (ENSPTXG00000000608) #11	HDLBP (ENSPTXG00000000584) #12	SEPTIN2 (ENSPTXG00000000570) #13	FARP2 (ENSPTXG00000000551) #14	STK25 (ENSPTXG00000000531) #15	BOK (ENSPTXG00000000525) #16	ENSPTXG00000000519	THAP4 (ENSPTXG00000000513) #17	ATG4B (ENSPTXG00000000499) #19	DTYMK (ENSPTXG00000000491) #20	ING5 (ENSPTXG00000000486) #21	D2HGDH (ENSPTXG00000000475) #22	GAL3ST2 (ENSPTXG00000000466) #23	NEU4 (ENSPTXG00000000312) #24	TM4SF19 (ENSPTXG00000000257)	UBXN7 (ENSPTXG00000000241)	RNF168 (ENSPTXG00000000224)	SMCO1 (ENSPTXG00000000202)	WDR53 (ENSPTXG00000000195)	FBXO45 (ENSPTXG00000000184)	NRROS (ENSPTXG00000000174)	CEP19 (ENSPTXG00000000167)	PIGX (ENSPTXG00000000151)	PAK2 (ENSPTXG00000000079)	ENSPTXG00000018859	ENSPTXG00000018858	ENSPTXG00000018857
Mainland tiger snake	MODERN SPECIES		MTERF4 (ENSNSUG00000013671) #8	ENSNSUG00000013669 #9	ENSNSUG00000013668	ANO7 (ENSNSUG00000013661) #11	HDLBP (ENSNSUG00000013655) #12	SEPTIN2 (ENSNSUG00000013653) #13	FARP2 (ENSNSUG00000013612) #14	STK25 (ENSNSUG00000013608) #15	BOK (ENSNSUG00000013607) #16	ENSNSUG00000013606	THAP4 (ENSNSUG00000013604) #17	ATG4B (ENSNSUG00000013508) #19	ENSNSUG00000013507 #20	ENSNSUG00000013506 #20	ING5 (ENSNSUG00000013504) #21	D2HGDH (ENSNSUG00000013503) #22	GAL3ST2 (ENSNSUG00000013502) #23	NEU4 (ENSNSUG00000013501) #24	TM4SF19 (ENSNSUG00000013500)	UBXN7 (ENSNSUG00000013499)	RNF168 (ENSNSUG00000013498)	SMCO1 (ENSNSUG00000013497)	WDR53 (ENSNSUG00000013496)	FBXO45 (ENSNSUG00000013495)	NRROS (ENSNSUG00000013494)	CEP19 (ENSNSUG00000013493)	ENSNSUG00000013492	PAK2 (ENSNSUG00000013491)	ENSNSUG00000013490	ENSNSUG00000013489	ENSNSUG00000013463
Blue-lipped sea krait	MODERN SPECIES	942									ENSLLTG00000001819	ENSLLTG00000001812	CFAP410 (ENSLLTG00000001805)	PFKL (ENSLLTG00000001059)	ATG4B (ENSLLTG00000000913) #19	DTYMK (ENSLLTG00000000897) #20	ING5 (ENSLLTG00000000882) #21	D2HGDH (ENSLLTG00000000865) #22
Indian cobra	MODERN SPECIES	3	SNED1 (ENSNNAG00000013357) #7	MTERF4 (ENSNNAG00000013269) #8	PASK (ENSNNAG00000013163) #9	ENSNNAG00000013125	ANO7 (ENSNNAG00000013009) #11	HDLBP (ENSNNAG00000012960) #12	SEPTIN2 (ENSNNAG00000012639) #13	FARP2 (ENSNNAG00000012506) #14	STK25 (ENSNNAG00000012467) #15	BOK (ENSNNAG00000012452) #16	ENSNNAG00000012442	THAP4 (ENSNNAG00000012429) #17	ATG4B (ENSNNAG00000012366) #19	DTYMK (ENSNNAG00000012343) #20	ING5 (ENSNNAG00000012325) #21	D2HGDH (ENSNNAG00000012317) #22	GAL3ST2 (ENSNNAG00000012292) #23	ENSNNAG00000012274	NEU4 (ENSNNAG00000012189) #24	ENSNNAG00000012163	UBXN7 (ENSNNAG00000012127)	RNF168 (ENSNNAG00000012102)	SMCO1 (ENSNNAG00000012090)	WDR53 (ENSNNAG00000012077)	FBXO45 (ENSNNAG00000012043)	NRROS (ENSNNAG00000012031)	CEP19 (ENSNNAG00000012014)	PIGX (ENSNNAG00000011997)	PAK2 (ENSNNAG00000011945)	ENSNNAG00000011924	LTF (ENSNNAG00000011035)
Lizard	MODERN SPECIES	2	PASK (ENSACAG00000001962) #9	ENSACAG00000001909	ANO7 (ENSACAG00000001789) #11	HDLBP (ENSACAG00000001556) #12	SEPTIN2 (ENSACAG00000001408) #13	FARP2 (ENSACAG00000001192) #14	STK25 (ENSACAG00000000971) #15	ENSACAG00000039196	ENSACAG00000040033	BOK (ENSACAG00000000919) #16	THAP4 (ENSACAG00000000876) #17	ENSACAG00000044488	ATG4B (ENSACAG00000000776) #19	DTYMK (ENSACAG00000000739) #20	ING5 (ENSACAG00000000665) #21	D2HGDH (ENSACAG00000000533) #22	GAL3ST2 (ENSACAG00000000492) #23	neu4 (ENSACAG00000000446) #24	TM4SF19 (ENSACAG00000000433)	UBXN7 (ENSACAG00000016312)	RNF168 (ENSACAG00000034899)	ENSACAG00000037121	WDR53 (ENSACAG00000016299)	FBXO45 (ENSACAG00000016292)	ENSACAG00000016291	CEP19 (ENSACAG00000016288)	PIGX (ENSACAG00000029652)	ENSACAG00000016263	ENSACAG00000016251	ENSACAG00000016246 #23	ENSACAG00000029241
tuatara	MODERN SPECIES	863																D2HGDH (ENSSPUG00000001996) #22	ENSSPUG00000001974 #24
Archelosauria	ANCESTRAL SPECIES	11	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Archosauria	ANCESTRAL SPECIES	48	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Aves	ANCESTRAL SPECIES	49	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000160680	ENSGT00940000156768	ENSGT00390000004977	ENSGT00950000182895.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b	ENSGT00940000156404	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656	ENSGT01080000257336.a.c.b
Neognathae	ANCESTRAL SPECIES	9	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000160680	ENSGT00940000156768	ENSGT00390000004977	ENSGT00950000182895.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b	ENSGT00940000156404	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Galloanserae	ANCESTRAL SPECIES	33	ENSGT00940000162473	ENSGT00940000159035 #9	ENSGT00460000041648 #8	ENSGT00940000160730 #7	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000153241.B	ENSGT00940000156474	ENSGT00940000157403	ENSGT00940000158597	ENSGT00940000156970	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Anatidae	ANCESTRAL SPECIES	29	ENSGT00940000158551.k.a #11	ENSGT00940000162473	ENSGT00940000159035 #9	ENSGT00460000041648 #8	ENSGT00940000160730 #7	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000153241.B	ENSGT00940000156474	ENSGT00940000157403	ENSGT00940000158597	ENSGT00940000156970	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Pink-footed goose	MODERN SPECIES	71	ANO7 (ENSABRG00000019474) #11	ENSABRG00000019504	PASK (ENSABRG00000019573) #9	MTERF4 (ENSABRG00000019613) #8	SNED1 (ENSABRG00000019626) #7	MAB21L4 (ENSABRG00000019646)	AGXT (ENSABRG00000019657)	KIF1A (ENSABRG00000019705)	ILKAP (ENSABRG00000019991)	KLHL30 (ENSABRG00000020001)	ESPNL (ENSABRG00000020003)	THAP4 (ENSABRG00000020004) #17	ATG4B (ENSABRG00000020005) #19	DTYMK (ENSABRG00000020011) #20	ING5 (ENSABRG00000020014) #21	D2HGDH (ENSABRG00000020017) #22	GAL3ST2 (ENSABRG00000020035) #23	NEU4 (ENSABRG00000020042) #24	TM4SF19 (ENSABRG00000020048)	UBXN7 (ENSABRG00000020056)	RNF168 (ENSABRG00000020067)	WDR53 (ENSABRG00000020072)	FBXO45 (ENSABRG00000020074)	NRROS (ENSABRG00000020077)	CEP19 (ENSABRG00000020078)	ENSABRG00000020082	PAK2 (ENSABRG00000020084)	ENSABRG00000020089	ENSABRG00000020101 #23	LTF (ENSABRG00000020110)	ENSABRG00000020128
Duck	MODERN SPECIES	27	FARP2 (ENSAPLG00000011291) #14	SEPTIN2 (ENSAPLG00000011787) #13	HDLBP (ENSAPLG00000011984) #12	ANO7 (ENSAPLG00000012833) #11	ENSAPLG00000012987	PASK (ENSAPLG00000013106) #9	SNED1 (ENSAPLG00000013362) #7	ENSAPLG00000024920	ENSAPLG00000025841	ILKAP (ENSAPLG00000014934)	KLHL30 (ENSAPLG00000015233)	THAP4 (ENSAPLG00000015265) #17	ATG4B (ENSAPLG00000015334) #19	DTYMK (ENSAPLG00000026754) #20	ING5 (ENSAPLG00000013706) #21	D2HGDH (ENSAPLG00000014011) #22	GAL3ST2 (ENSAPLG00000014587) #23	NEU4 (ENSAPLG00000020688) #24	TM4SF19 (ENSAPLG00000015072)	UBXN7 (ENSAPLG00000015073)	RNF168 (ENSAPLG00000015285)	WDR53 (ENSAPLG00000015360)	FBXO45 (ENSAPLG00000015407)	NRROS (ENSAPLG00000015411)	CEP19 (ENSAPLG00000015449)	PIGX (ENSAPLG00000015450)	PAK2 (ENSAPLG00000015483)	ENSAPLG00000015781	ENSAPLG00000015784 #23	LTF (ENSAPLG00000015785)	ENSAPLG00000016555
Phasianidae	ANCESTRAL SPECIES	9	ENSGT00900000141059 #12	ENSGT00940000162473	ENSGT00940000159035 #9	ENSGT00460000041648 #8	ENSGT00940000160730 #7	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000153241.B	ENSGT00940000156474	ENSGT00940000157403	ENSGT00940000158597	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119.i
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT00900000141059 #12	ENSGT00940000158551.k.b #10	ENSGT00940000159035 #9	ENSGT00460000041648 #8	ENSGT00940000160730 #7	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000153241.B	ENSGT00940000156474	ENSGT00940000157403	ENSGT00940000158597	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119.i
Chicken	MODERN SPECIES	38	HDLBP (ENSGALG00010023338) #12	PPP1R7 (ENSGALG00010023332) #10	PASK (ENSGALG00010023299) #9	MTERF4 (ENSGALG00010025403) #8	SNED1 (ENSGALG00010025389) #7	MAB21L4 (ENSGALG00010024962)	AGXT (ENSGALG00010024959)	KIF1A (ENSGALG00010024946)	ILKAP (ENSGALG00010024937)	KLHL30 (ENSGALG00010024935)	ENSGALG00010024929	THAP4 (ENSGALG00010024928) #17	ATG4B (ENSGALG00010024918) #19	DTYMK (ENSGALG00010024900) #20	ING5 (ENSGALG00010024883) #21	D2HGDH (ENSGALG00010024879) #22	GAL3ST2 (ENSGALG00010024875) #23	NEU4 (ENSGALG00010024860) #24	TM4SF19 (ENSGALG00010024844)	UBXN7 (ENSGALG00010024825)	RNF168 (ENSGALG00010024813)	WDR53 (ENSGALG00010024804)	FBXO45 (ENSGALG00010024798)	NRROS (ENSGALG00010024795)	CEP19 (ENSGALG00010024781)	PIGX (ENSGALG00010024755)	PAK2 (ENSGALG00010024742)	AQP12A (ENSGALG00010024730)	ENSGALG00010024727 #23	TF (ENSGALG00010024717)	SRPRB (ENSGALG00010024714)
Turkey	MODERN SPECIES	2	ENSMGAG00000003010	TF (ENSMGAG00000003078)	ENSMGAG00000019705	ENSMGAG00000003154 #23	ENSMGAG00000003166	FBXO45 (ENSMGAG00000003238)	NRROS (ENSMGAG00000003232)	CEP19 (ENSMGAG00000003224)	PIGX (ENSMGAG00000003201)	ENSMGAG00000003252	ENSMGAG00000018260	ENSMGAG00000003332 #23	ENSMGAG00000003321 #24	ENSMGAG00000003292	ENSMGAG00000003262	ENSMGAG00000003345 #22	ENSMGAG00000003364 #21	ENSMGAG00000017774 #20	ENSMGAG00000003390 #19	ENSMGAG00000022657	ENSMGAG00000003442 #17	ENSMGAG00000019835	ENSMGAG00000005462	ENSMGAG00000003460	ENSMGAG00000008597	ENSMGAG00000008634	ENSMGAG00000008664	ENSMGAG00000003584 #7	ENSMGAG00000003607 #9	ENSMGAG00000003650	ENSMGAG00000003686 #12
Japanese quail	MODERN SPECIES	27	ENSCJPG00005002206	PASK (ENSCJPG00005002204) #9	SNED1 (ENSCJPG00005002116) #7	MAB21L4 (ENSCJPG00005002089)	AGXT (ENSCJPG00005002074)	KIF1A (ENSCJPG00005001732)	ENSCJPG00005001707	ILKAP (ENSCJPG00005001698)	KLHL30 (ENSCJPG00005001693)	THAP4 (ENSCJPG00005001688) #17	ENSCJPG00005001683	ENSCJPG00005001678 #17	ATG4B (ENSCJPG00005001671) #19	DTYMK (ENSCJPG00005001666) #20	ING5 (ENSCJPG00005001656) #21	D2HGDH (ENSCJPG00005001651) #22	GAL3ST2 (ENSCJPG00005001643) #23	NEU4 (ENSCJPG00005001638) #24	TM4SF19 (ENSCJPG00005001630)	UBXN7 (ENSCJPG00005001388)	RNF168 (ENSCJPG00005001374)	WDR53 (ENSCJPG00005001369)	FBXO45 (ENSCJPG00005001364)	NRROS (ENSCJPG00005001359)	CEP19 (ENSCJPG00005001358)	ENSCJPG00005001354	ENSCJPG00005001352	ENSCJPG00005001345	ENSCJPG00005001313	ENSCJPG00005001305 #23	LTF (ENSCJPG00005001123)
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000160680	ENSGT00940000156768	ENSGT00390000004977	ENSGT00950000182895.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b	ENSGT00940000156404	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Neognathae_c	ANCESTRAL SPECIES	13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000160680	ENSGT00940000156768	ENSGT00390000004977	ENSGT00950000182895.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b	ENSGT00940000156404	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Golden eagle	MODERN SPECIES	1	FARP2 (ENSACCG00020006362) #14	STK25 (ENSACCG00020006340) #15	BOK (ENSACCG00020006323) #16	ETV5 (ENSACCG00020006267)	DGKG (ENSACCG00020006205)	ENSACCG00020006180	SUMO3 (ENSACCG00020006165)	UBE2G2 (ENSACCG00020006144)	TSPEAR (ENSACCG00020006103)	LRRC3 (ENSACCG00020006078)	TRPM2 (ENSACCG00020006040)	THAP4 (ENSACCG00020006021) #17	ATG4B (ENSACCG00020005995) #19	DTYMK (ENSACCG00020005969) #20	ING5 (ENSACCG00020005952) #21	D2HGDH (ENSACCG00020005925) #22	GAL3ST2 (ENSACCG00020005907) #23	NEU4 (ENSACCG00020005884) #24	TM4SF19 (ENSACCG00020005863)	UBXN7 (ENSACCG00020005823)	RNF168 (ENSACCG00020005790)	WDR53 (ENSACCG00020005777)	FBXO45 (ENSACCG00020005762)	NRROS (ENSACCG00020005756)	CEP19 (ENSACCG00020005735)	PIGX (ENSACCG00020005724)	PAK2 (ENSACCG00020005707)	ENSACCG00020005680	ENSACCG00020005650 #23	LTF (ENSACCG00020005622)	ENSACCG00020005597
Kakapo	MODERN SPECIES	25	STK25 (ENSSHBG00005019215) #15	BOK (ENSSHBG00005019219) #16	ETV5 (ENSSHBG00005019229)	DGKG (ENSSHBG00005019268)	ENSSHBG00005019709	SUMO3 (ENSSHBG00005019710)	UBE2G2 (ENSSHBG00005019713)	TSPEAR (ENSSHBG00005019721)	LRRC3 (ENSSHBG00005019730)	ENSSHBG00005019732	TRPM2 (ENSSHBG00005019743)	THAP4 (ENSSHBG00005019750) #17	ATG4B (ENSSHBG00005019753) #19	DTYMK (ENSSHBG00005019758) #20	ING5 (ENSSHBG00005019761) #21	D2HGDH (ENSSHBG00005019764) #22	GAL3ST2 (ENSSHBG00005019768) #23	NEU4 (ENSSHBG00005019771) #24	TM4SF19 (ENSSHBG00005019776)	UBXN7 (ENSSHBG00005000533)	RNF168 (ENSSHBG00005000535)	WDR53 (ENSSHBG00005010326)	FBXO45 (ENSSHBG00005010348)	NRROS (ENSSHBG00005010360)	DNAI3 (ENSSHBG00005010404)	MCOLN3 (ENSSHBG00005010500)	MCOLN2 (ENSSHBG00005010531)	LPAR3 (ENSSHBG00005010585)	SSX2IP (ENSSHBG00005010615)	ENSSHBG00005010730	ENSSHBG00005011058
Passeriformes	ANCESTRAL SPECIES	9	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000160680	ENSGT00940000156768	ENSGT00390000004977	ENSGT00950000182895.a.a.a.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b	ENSGT00940000156404	ENSGT00940000158447 #17	ENSGT00990000204467	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Passeriformes_d	ANCESTRAL SPECIES	10	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000160680	ENSGT00940000156768	ENSGT00390000004977	ENSGT00950000182895.a.a.a.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b	ENSGT00940000156404	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Passeriformes_g	ANCESTRAL SPECIES	11	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000160680	ENSGT00940000156768	ENSGT00390000004977	ENSGT00950000182895.a.a.a.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b	ENSGT00940000156404	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT01080000257336.a.c.b	ENSGT00940000155119
Medium ground finch	MODERN SPECIES	83	SEPTIN2 (ENSGFOG00000000062) #13	FARP2 (ENSGFOG00000000057) #14	STK25 (ENSGFOG00000000044) #15	BOK (ENSGFOG00000014160) #16	ETV5 (ENSGFOG00000014156)	DGKG (ENSGFOG00000014148)	ENSGFOG00000014145	ENSGFOG00000014135	UBE2G2 (ENSGFOG00000014133)	TSPEAR (ENSGFOG00000014131)	TRPM2 (ENSGFOG00000014119)	THAP4 (ENSGFOG00000014109) #17	ATG4B (ENSGFOG00000014102) #19	DTYMK (ENSGFOG00000014094) #20	ING5 (ENSGFOG00000014091) #21	D2HGDH (ENSGFOG00000014089) #22	GAL3ST2 (ENSGFOG00000014088) #23	NEU4 (ENSGFOG00000014086) #24	TM4SF19 (ENSGFOG00000014084)	UBXN7 (ENSGFOG00000014083)	RNF168 (ENSGFOG00000014080)	WDR53 (ENSGFOG00000014079)	FBXO45 (ENSGFOG00000014077)	NRROS (ENSGFOG00000014075)	CEP19 (ENSGFOG00000014073)	PIGX (ENSGFOG00000014071)	PAK2 (ENSGFOG00000014069)	ENSGFOG00000014063	ENSGFOG00000014058 #23	LTF (ENSGFOG00000014052)	ENSGFOG00000014048
Passeroidea	ANCESTRAL SPECIES	13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000160680	ENSGT00940000156768	ENSGT00390000004977	ENSGT00950000182895.a.a.a.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b	ENSGT00940000156404	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d
Zebra finch	MODERN SPECIES	31	FARP2 (ENSTGUG00000006134) #14	STK25 (ENSTGUG00000006107) #15	BOK (ENSTGUG00000006098) #16	ETV5 (ENSTGUG00000006059)	DGKG (ENSTGUG00000006053)	ENSTGUG00000006048	ENSTGUG00000025998	UBE2G2 (ENSTGUG00000018863)	TSPEAR (ENSTGUG00000006025)	LRRC3 (ENSTGUG00000006022)	TRPM2 (ENSTGUG00000005963)	THAP4 (ENSTGUG00000005955) #17	ATG4B (ENSTGUG00000005940) #19	DTYMK (ENSTGUG00000005937) #20	ING5 (ENSTGUG00000005928) #21	D2HGDH (ENSTGUG00000005907) #22	GAL3ST2 (ENSTGUG00000005898) #23	NEU4 (ENSTGUG00000019131) #24	TM4SF19 (ENSTGUG00000005895)	UBXN7 (ENSTGUG00000005882)	RNF168 (ENSTGUG00000005879)	WDR53 (ENSTGUG00000020679)	FBXO45 (ENSTGUG00000027628)	NRROS (ENSTGUG00000005871)	CEP19 (ENSTGUG00000022483)	ENSTGUG00000020740	ENSTGUG00000005859	PAK2 (ENSTGUG00000005832)	ENSTGUG00000005831	ENSTGUG00000005823 #23	ENSTGUG00000023615
Common canary	MODERN SPECIES	10	AMMECR1L (ENSSCAG00000008762)	POLR2D (ENSSCAG00000008758)	WDR33 (ENSSCAG00000008715)	ENSSCAG00000008687	ENSSCAG00000008683	ENSSCAG00000008679	UBE2G2 (ENSSCAG00000008635)	TSPEAR (ENSSCAG00000008617)	LRRC3 (ENSSCAG00000008609)	TRPM2 (ENSSCAG00000008370)	ENSSCAG00000008302 #17	THAP4 (ENSSCAG00000008294) #17	ATG4B (ENSSCAG00000008031) #19	DTYMK (ENSSCAG00000008012) #20	ING5 (ENSSCAG00000008000) #21	D2HGDH (ENSSCAG00000007988) #22	GAL3ST2 (ENSSCAG00000007984) #23	NEU4 (ENSSCAG00000007982) #24	TM4SF19 (ENSSCAG00000007980)	UBXN7 (ENSSCAG00000007974)	RNF168 (ENSSCAG00000007972)	WDR53 (ENSSCAG00000007968)	FBXO45 (ENSSCAG00000007967)	NRROS (ENSSCAG00000007966)	CEP19 (ENSSCAG00000007963)	PIGX (ENSSCAG00000007961)	PAK2 (ENSSCAG00000007956)	ENSSCAG00000007950	ENSSCAG00000007945 #23	ENSSCAG00000007943	DGKG (ENSSCAG00000007938)
Flycatcher	MODERN SPECIES	28	FARP2 (ENSFALG00000003423) #14	STK25 (ENSFALG00000003418) #15	BOK (ENSFALG00000003408) #16	ENSFALG00000029014	ENSFALG00000003383	ENSFALG00000003364	ENSFALG00000003350	UBE2G2 (ENSFALG00000003340)	TSPEAR (ENSFALG00000003329)	LRRC3 (ENSFALG00000014513)	TRPM2 (ENSFALG00000003318)	THAP4 (ENSFALG00000003312) #17	ATG4B (ENSFALG00000003277) #19	DTYMK (ENSFALG00000003256) #20	ING5 (ENSFALG00000028331) #21	D2HGDH (ENSFALG00000003213) #22	GAL3ST2 (ENSFALG00000025391) #23	NEU4 (ENSFALG00000023218) #24	TM4SF19 (ENSFALG00000027610)	ENSFALG00000022967	UBXN7 (ENSFALG00000023973)	RNF168 (ENSFALG00000023716)	WDR53 (ENSFALG00000003141)	FBXO45 (ENSFALG00000023748)	NRROS (ENSFALG00000003124)	CEP19 (ENSFALG00000028051)	PIGX (ENSFALG00000003105)	ENSFALG00000003098	ENSFALG00000003091	ENSFALG00000026140 #23	ENSFALG00000003053
Great tit	MODERN SPECIES	29	RBP1 (ENSPMJG00000016513)	RBP2 (ENSPMJG00000016514)	COPB2 (ENSPMJG00000016515)	MRPS22 (ENSPMJG00000016516)	PIK3CB (ENSPMJG00000016518)	ENSPMJG00000016519	UBE2G2 (ENSPMJG00000016520)	TSPEAR (ENSPMJG00000016521)	LRRC3 (ENSPMJG00000016522)	TRPM2 (ENSPMJG00000016523)	THAP4 (ENSPMJG00000016524) #17	ENSPMJG00000016525	ATG4B (ENSPMJG00000016526) #19	DTYMK (ENSPMJG00000016527) #20	ING5 (ENSPMJG00000016528) #21	D2HGDH (ENSPMJG00000016529) #22	GAL3ST2 (ENSPMJG00000016530) #23	NEU4 (ENSPMJG00000016531) #24	TM4SF19 (ENSPMJG00000016532)	UBXN7 (ENSPMJG00000016533)	RNF168 (ENSPMJG00000016534)	WDR53 (ENSPMJG00000016535)	FBXO45 (ENSPMJG00000016536)	NRROS (ENSPMJG00000016537)	CEP19 (ENSPMJG00000016538)	PIGX (ENSPMJG00000016539)	PAK2 (ENSPMJG00000016540)	ENSPMJG00000016541	ENSPMJG00000016542 #23	LTF (ENSPMJG00000016544)	ENSPMJG00000016545
African ostrich	MODERN SPECIES	321										ENSSCUG00000004512	THAP4 (ENSSCUG00000004514) #17	ENSSCUG00000004519	ATG4B (ENSSCUG00000004523) #19	DTYMK (ENSSCUG00000004529) #20	ING5 (ENSSCUG00000004549) #21	D2HGDH (ENSSCUG00000004551) #22	ENSSCUG00000004555	GAL3ST2 (ENSSCUG00000004556) #23	NEU4 (ENSSCUG00000004559) #24	TM4SF19 (ENSSCUG00000004560)	UBXN7 (ENSSCUG00000004563)	RNF168 (ENSSCUG00000004567)	WDR53 (ENSSCUG00000004570)	FBXO45 (ENSSCUG00000004571)	NRROS (ENSSCUG00000004575)	CEP19 (ENSSCUG00000004579)	PIGX (ENSSCUG00000004583)	PAK2 (ENSSCUG00000004586)	ENSSCUG00000004592	ENSSCUG00000004596 #23	LTF (ENSSCUG00000004607)
Australian saltwater crocodile	MODERN SPECIES	48	EFHD1 (ENSCPRG00005009720)	PASK (ENSCPRG00005009702) #9	ENSCPRG00005009690	ANO7 (ENSCPRG00005009673) #11	HDLBP (ENSCPRG00005009637) #12	SEPTIN2 (ENSCPRG00005009622) #13	FARP2 (ENSCPRG00005009604) #14	STK25 (ENSCPRG00005009602) #15	BOK (ENSCPRG00005009598) #16	ENSCPRG00005009594 #17	ENSCPRG00005009591 #17	ATG4B (ENSCPRG00005009583) #19	ENSCPRG00005009578 #20	ENSCPRG00005009571 #20	ING5 (ENSCPRG00005009567) #21	D2HGDH (ENSCPRG00005009564) #22	GAL3ST2 (ENSCPRG00005009561) #23	NEU4 (ENSCPRG00005009553) #24	TM4SF19 (ENSCPRG00005009550)	UBXN7 (ENSCPRG00005009545)	RNF168 (ENSCPRG00005009543)	SMCO1 (ENSCPRG00005009542)	WDR53 (ENSCPRG00005009540)	FBXO45 (ENSCPRG00005009539)	NRROS (ENSCPRG00005009536)	CEP19 (ENSCPRG00005009535)	PIGX (ENSCPRG00005009530)	PAK2 (ENSCPRG00005009523)	ENSCPRG00005009514	ENSCPRG00005009505 #23	LTF (ENSCPRG00005009494)
Cryptodira	ANCESTRAL SPECIES	37	ENSGT00940000162689	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT00940000162689	ENSGT00940000160730.g #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Emydidae	ANCESTRAL SPECIES	3	ENSGT01050000244976.b.b.b.a.a.b	ENSGT00940000160730.g #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
painted turtle	MODERN SPECIES	983					ENSCPBG00000002485 #11	HDLBP (ENSCPBG00000002442) #12	SEPTIN2 (ENSCPBG00000002410) #13	FARP2 (ENSCPBG00000002320) #14	STK25 (ENSCPBG00000002280) #15	ENSCPBG00000002250	BOK (ENSCPBG00000002235) #16	THAP4 (ENSCPBG00000002196) #17	ATG4B (ENSCPBG00000002176) #19	DTYMK (ENSCPBG00000002159) #20	ING5 (ENSCPBG00000002147) #21	D2HGDH (ENSCPBG00000002124) #22
Three-toed box turtle	MODERN SPECIES	384		SNED1 (ENSTMTG00000011231) #7	MTERF4 (ENSTMTG00000011101) #8	PASK (ENSTMTG00000010968) #9	ENSTMTG00000010932	ANO7 (ENSTMTG00000010587) #11	HDLBP (ENSTMTG00000010501) #12	SEPTIN2 (ENSTMTG00000010461) #13	FARP2 (ENSTMTG00000010397) #14	STK25 (ENSTMTG00000010360) #15	BOK (ENSTMTG00000010344) #16	THAP4 (ENSTMTG00000010312) #17	ATG4B (ENSTMTG00000010290) #19	DTYMK (ENSTMTG00000010279) #20	ING5 (ENSTMTG00000010268) #21	D2HGDH (ENSTMTG00000010256) #22	GAL3ST2 (ENSTMTG00000010235) #23	NEU4 (ENSTMTG00000010165) #24	TM4SF19 (ENSTMTG00000010116)	UBXN7 (ENSTMTG00000010094)	RNF168 (ENSTMTG00000010072)	SMCO1 (ENSTMTG00000010057)	WDR53 (ENSTMTG00000010043)	FBXO45 (ENSTMTG00000010034)	NRROS (ENSTMTG00000010021)	CEP19 (ENSTMTG00000010000)	PIGX (ENSTMTG00000009980)	ENSTMTG00000009964	PAK2 (ENSTMTG00000009932)	ENSTMTG00000009894	ENSTMTG00000009866 #23
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00940000162689	ENSGT00940000160730.g #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00950000182923.B.a #23	ENSGT00950000182944.B.a #24	ENSGT01030000234590.A.a.a	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00390000010564	ENSGT00390000011073	ENSGT01030000234629.D	ENSGT00940000157975	ENSGT00390000016356	ENSGT00390000017679	ENSGT00950000182988.a.a	ENSGT00530000063816.d	ENSGT00940000156055	ENSGT00940000159656
Abingdon island giant tortoise	MODERN SPECIES	128						ENSCABG00000020993	RELN (ENSCABG00000020979)	FARP2 (ENSCABG00000020968) #14	STK25 (ENSCABG00000020959) #15	BOK (ENSCABG00000020956) #16	THAP4 (ENSCABG00000020953) #17	ENSCABG00000020951 #17	ATG4B (ENSCABG00000020875) #19	DTYMK (ENSCABG00000020870) #20	ING5 (ENSCABG00000020868) #21	D2HGDH (ENSCABG00000020867) #22
Goode s thornscrub tortoise	MODERN SPECIES	23	SNED1 (ENSGEVG00005004926) #7	MTERF4 (ENSGEVG00005004909) #8	PASK (ENSGEVG00005004788) #9	ENSGEVG00005004738	ENSGEVG00005004686	ANO7 (ENSGEVG00005004568) #11	HDLBP (ENSGEVG00005004373) #12	SEPTIN2 (ENSGEVG00005004304) #13	FARP2 (ENSGEVG00005004190) #14	STK25 (ENSGEVG00005004130) #15	BOK (ENSGEVG00005004117) #16	THAP4 (ENSGEVG00005020267) #17	ATG4B (ENSGEVG00005020250) #19	DTYMK (ENSGEVG00005020241) #20	ING5 (ENSGEVG00005020237) #21	D2HGDH (ENSGEVG00005020232) #22	GAL3ST2 (ENSGEVG00005020227) #23	NEU4 (ENSGEVG00005020219) #24	TM4SF19 (ENSGEVG00005020212)	UBXN7 (ENSGEVG00005020209)	RNF168 (ENSGEVG00005020205)	SMCO1 (ENSGEVG00005020202)	WDR53 (ENSGEVG00005020198)	FBXO45 (ENSGEVG00005020196)	NRROS (ENSGEVG00005020191)	CEP19 (ENSGEVG00005020190)	PIGX (ENSGEVG00005020188)	PAK2 (ENSGEVG00005020183)	ENSGEVG00005020177	ENSGEVG00005020172 #23	LTF (ENSGEVG00005020162)
Chinese turtle	MODERN SPECIES	78							HDLBP (ENSPSIG00000010068) #12	SEPTIN2 (ENSPSIG00000009642) #13	FARP2 (ENSPSIG00000008274) #14	STK25 (ENSPSIG00000007529) #15	BOK (ENSPSIG00000007482) #16	THAP4 (ENSPSIG00000006771) #17	ATG4B (ENSPSIG00000010954) #19	DTYMK (ENSPSIG00000010377) #20	ING5 (ENSPSIG00000010017) #21	D2HGDH (ENSPSIG00000009298) #22	GAL3ST2 (ENSPSIG00000009143) #23
Anura	ANCESTRAL SPECIES	13	ENSGT00940000162689.b	ENSGT00940000160730 #7	ENSGT00460000041648 #8	ENSGT00940000159035 #9	ENSGT00940000162473	ENSGT00940000158551.k.a #11	ENSGT00900000141059 #12	ENSGT00940000155098 #13	ENSGT00940000158642 #14	ENSGT00940000153476.a #15	ENSGT01090000260100.B #16	ENSGT00940000158447 #17	ENSGT00530000063000.a.b.b #19	ENSGT00940000154030.a.a #20	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00940000159041	ENSGT00940000154505.B	ENSGT00940000165072	ENSGT00720000108834	ENSGT00940000157247	ENSGT01100000263537.b.a.a.b.a	ENSGT00730000111130	ENSGT00440000037733	ENSGT00390000010397.b	ENSGT00390000004912	ENSGT00940000157731	ENSGT00970000193372.b	ENSGT00390000010895	ENSGT00390000013776	ENSGT00940000155954.a
Frog	MODERN SPECIES	5	awat1 (ENSXETG00000033126)	KCNE4 (ENSXETG00000047756)	scg2 (ENSXETG00000002939)	ap1s3 (ENSXETG00000045809)	polr2d (ENSXETG00000002955)	wdfy1 (ENSXETG00000033169)	AMMECR1L (ENSXETG00000002956)	oxsr1 (ENSXETG00000002957)	wdr33 (ENSXETG00000002960)	gpr17 (ENSXETG00000046161)	MYO7B (ENSXETG00000032898)	iws1 (ENSXETG00000002963)	proc.2 (ENSXETG00000030091)	proc (ENSXETG00000002964)	dgkd (ENSXETG00000030286)	d2hgdh (ENSXETG00000033115) #22	ing5 (ENSXETG00000002976) #21	dtymk (ENSXETG00000002980) #20	atg4b (ENSXETG00000002981) #19	stk25 (ENSXETG00000002989) #17	ENSXETG00000036369	bok (ENSXETG00000031956) #16	FARP2 (ENSXETG00000034178) #14	septin2 (ENSXETG00000012166) #13	hdlbp (ENSXETG00000012164) #12	ppp1r7 (ENSXETG00000012163)	pask (ENSXETG00000032412) #9	lamtor3-like (ENSXETG00000026765)	mterf4 (ENSXETG00000032078) #8	sned1 (ENSXETG00000033664) #7	ENSXETG00000012154
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000007514	ENSLLEG00000007524	ENSLLEG00000007530	ANO7 (ENSLLEG00000007546) #11	ENSLLEG00000007657 #12	SEPTIN2 (ENSLLEG00000007852) #13	FARP2 (ENSLLEG00000008133) #14	ENSLLEG00000008333	STK25 (ENSLLEG00000008393) #15	BOK (ENSLLEG00000009025) #16	ENSLLEG00000009080	THAP4 (ENSLLEG00000009125) #17	ATG4B (ENSLLEG00000009394) #19	DTYMK (ENSLLEG00000009631) #20	ING5 (ENSLLEG00000009744) #21	D2HGDH (ENSLLEG00000009840) #22	ENSLLEG00000009927	DGKD (ENSLLEG00000009983)	EIF1AX (ENSLLEG00000010886)	ENSLLEG00000011057	IWS1 (ENSLLEG00000011952)	MYO7B (ENSLLEG00000012163)	GPR17 (ENSLLEG00000012521)	WDR33 (ENSLLEG00000012545)	SAP130 (ENSLLEG00000012774)	ENSLLEG00000014062	AMMECR1L (ENSLLEG00000014102)	WDFY1 (ENSLLEG00000014308)	AP1S3 (ENSLLEG00000014394)	ENSLLEG00000014523	SCG2 (ENSLLEG00000014548)
Coelacanth	MODERN SPECIES	3522																D2HGDH (ENSLACG00000003203) #22
Actinopterygii	ANCESTRAL SPECIES	513											ENSGT00530000063816.d	ENSGT00950000182988.a.a.b	ENSGT00390000017679	ENSGT00390000016356	ENSGT00940000158159 #21	ENSGT00550000075086 #22
Neopterygii	ANCESTRAL SPECIES	68	ENSGT00940000157183.b	ENSGT00940000159794	ENSGT00940000160041	ENSGT00940000166623	ENSGT00940000154694	ENSGT00940000159706	ENSGT00460000041630	ENSGT01050000244897.a.a.b	ENSGT01050000244955.b	ENSGT00530000063816.d	ENSGT00390000003020	ENSGT00950000182988.a.a.b	ENSGT00390000017679	ENSGT00390000016356	ENSGT00940000158159 #21	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00390000013989.a	ENSGT00950000183071.a.a.b	ENSGT00390000004600.b.a	ENSGT00940000165265	ENSGT00990000208723	ENSGT01030000235347	ENSGT01080000257487	ENSGT00530000064220	ENSGT00950000183086.a.a.b	ENSGT00950000183179.b.b	ENSGT00940000159675	ENSGT00940000160165	ENSGT00900000141083.d
Osteoglossocephalai	ANCESTRAL SPECIES	368																ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000165265	ENSGT00990000208723	ENSGT01030000235347	ENSGT01080000257487
Clupeocephala	ANCESTRAL SPECIES	403																ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000165265	ENSGT00980000200268	ENSGT00990000205697	ENSGT01030000235105	ENSGT00940000156948.i.a
Otomorpha	ANCESTRAL SPECIES	38	ENSGT01050000244824.D.b	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a	ENSGT00940000158294.g.b	ENSGT00440000033985	ENSGT00390000011072	ENSGT00920000149157.c	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00980000200268	ENSGT01060000253400	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.h	ENSGT01030000234629.C.d	ENSGT00950000183086.a.a.b.h.b	ENSGT00950000183179.b.b
Otophysi	ANCESTRAL SPECIES	3	ENSGT01050000244824.D.b	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a	ENSGT00940000158294.g.b	ENSGT00440000033985	ENSGT00390000011072	ENSGT00920000149157.c	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT01060000253400	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.h	ENSGT01030000234629.C.d	ENSGT00950000183086.a.a.b.h.b	ENSGT00950000183179.b.b
Characiphysae	ANCESTRAL SPECIES	35	ENSGT00510000046975.a	ENSGT00940000164081.a	ENSGT00940000165058.b	ENSGT00940000166298	ENSGT00940000157316.e.a	ENSGT00940000158520.e.a	ENSGT00940000157937.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00920000149157.c	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.d	ENSGT00950000183116.b.a.a.a.b	ENSGT00950000183086.a.a.b.h.b
Channel catfish	MODERN SPECIES	26	ENSIPUG00000008833	rgs5b (ENSIPUG00000008824)	ENSIPUG00000008813	rgs18 (ENSIPUG00000008757)	ENSIPUG00000008747	rgs13 (ENSIPUG00000008733)	ENSIPUG00000008717	blvra (ENSIPUG00000008694)	wdr48b (ENSIPUG00000008547)	ebi3 (ENSIPUG00000008505)	odf3l2a (ENSIPUG00000008484)	crlf1 (ENSIPUG00000008457)	keap1a (ENSIPUG00000008421)	Ssbp3 (ENSIPUG00000008191)	znf622 (ENSIPUG00000008147)	d2hgdh (ENSIPUG00000008094) #22	acvr1l (ENSIPUG00000008043)	otomp (ENSIPUG00000008009)	ENSIPUG00000008000	hs6st1a (ENSIPUG00000007988)	uggt1 (ENSIPUG00000007756)	epha4b (ENSIPUG00000007629)	ENSIPUG00000007607	ENSIPUG00000007598	ENSIPUG00000007592	ccl20l (ENSIPUG00000007562)	epha4 (ENSIPUG00000007517)	slc25a36 (ENSIPUG00000007464)	spsb4a (ENSIPUG00000007449)	clstn2a (ENSIPUG00000007348)	RBP2 (ENSIPUG00000007321)
Characiphysae_b	ANCESTRAL SPECIES	33	ENSGT00510000046975.a	ENSGT00940000164081.a	ENSGT00940000165058.b	ENSGT00940000166298	ENSGT00940000157316.e.a	ENSGT00940000158520.e.a	ENSGT00940000157937.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00920000149157.c	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.b.d	ENSGT01030000234629.C.d	ENSGT00950000183116.b.a.a.a.b
Characoidei	ANCESTRAL SPECIES	20	ENSGT00510000046975.a	ENSGT00940000164081.a	ENSGT00940000165058.b	ENSGT00940000166298	ENSGT00940000157316.e.a	ENSGT00940000158520.e.a	ENSGT00940000157937.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00920000149157.c	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.d	ENSGT00950000183116.b.a.a.a.b	ENSGT00950000183086.a.a.b.h.b
Red-bellied piranha	MODERN SPECIES	66	rgs18 (ENSPNAG00000025684)	RGS1 (ENSPNAG00000025669)	rgs13 (ENSPNAG00000025652)	RGS2 (ENSPNAG00000025645)	ENSPNAG00000004724	ENSPNAG00000025623	blvra (ENSPNAG00000025610)	wdr48b (ENSPNAG00000025589)	ebi3 (ENSPNAG00000025513)	odf3l2a (ENSPNAG00000005673)	crlf1a (ENSPNAG00000025478)	keap1a (ENSPNAG00000025437)	ENSPNAG00000025414	zgc:110158 (ENSPNAG00000025374)	ZNF622 (ENSPNAG00000025225)	d2hgdh (ENSPNAG00000025194) #22	acvr1l (ENSPNAG00000025117)	otomp (ENSPNAG00000025070)	hs6st1a (ENSPNAG00000025013)	uggt1 (ENSPNAG00000024958)	epha4b (ENSPNAG00000024582)
Mexicana tetra	MODERN SPECIES	7	rgs5b (ENSAMXG00000043798)	ENSAMXG00000019298	rgs18 (ENSAMXG00000019306)	RGS1 (ENSAMXG00000037976)	rgs13 (ENSAMXG00000039869)	RGS2 (ENSAMXG00000043625)	ENSAMXG00000036895	blvra (ENSAMXG00000019321)	wdr48b (ENSAMXG00000019327)	ebi3 (ENSAMXG00000032252)	odf3l2a (ENSAMXG00000019334)	crlf1a (ENSAMXG00000019340)	keap1a (ENSAMXG00000019344)	zgc:110158 (ENSAMXG00000019347)	ZNF622 (ENSAMXG00000019355)	d2hgdh (ENSAMXG00000019359) #22	acvr1l (ENSAMXG00000019362)	otomp (ENSAMXG00000033025)	rnf220a (ENSAMXG00000012286)	ENSAMXG00000039871	ENSAMXG00000033296	KLF2 (ENSAMXG00000030891)	slc6a9 (ENSAMXG00000012229)	ENSAMXG00000012210	zgc:113531 (ENSAMXG00000035946)	b4galt2 (ENSAMXG00000012181)	atp6v0b (ENSAMXG00000034647)	ENSAMXG00000030752	ENSAMXG00000039213	ENSAMXG00000031130	ENSAMXG00000034445
Electric eel	MODERN SPECIES	379	ENSEEEG00000017679	rgs18 (ENSEEEG00000017792)	RGS1 (ENSEEEG00000017793)	rgs13 (ENSEEEG00000017795)	RGS2 (ENSEEEG00000017797)	ENSEEEG00000017801	blvra (ENSEEEG00000017803)	wdr48b (ENSEEEG00000017809)	ebi3 (ENSEEEG00000018074)	odf3l2a (ENSEEEG00000018076)	crlf1a (ENSEEEG00000018079)	keap1a (ENSEEEG00000018082)	ENSEEEG00000018084	ENSEEEG00000018086	ZNF622 (ENSEEEG00000018087)	d2hgdh (ENSEEEG00000018093) #22	acvr1l (ENSEEEG00000018099)	otomp (ENSEEEG00000018106)
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00940000153141.B.b	ENSGT00940000154004.a.e.a	ENSGT00940000154473.b.a.b	ENSGT00390000003849	ENSGT00390000002854	ENSGT00940000177201	ENSGT00390000015084.c.b	ENSGT00940000154265.lc.a	ENSGT00940000162297.c.a	ENSGT00940000160694.h	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01060000253400	ENSGT01030000235105	ENSGT00940000156948.i.b	ENSGT00940000154369.g.a	ENSGT01030000234629.C.d	ENSGT00940000162556.D.b.a	ENSGT00950000183116.b.a.a.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	671														ENSGT00950000183049.C.a.a.h.b	ENSGT00390000018047.v	ENSGT00550000075086.a #22	ENSGT00940000166078.b	ENSGT00940000166763.b	ENSGT00950000183071.a.a.b.c.c.d	ENSGT00390000004600.b.a.j	ENSGT00940000165265.g.a.d	ENSGT00990000209937.b	ENSGT00990000209992.A	ENSGT00990000208442.a.b	ENSGT00940000173713.h.b.b	ENSGT01030000235105.b.b
Goldfish	MODERN SPECIES	19	trim55a (ENSCARG00000017258)	VCPIP1 (ENSCARG00000017241)	ENSCARG00000017232	ENSCARG00000017222	gbp1 (ENSCARG00000017159)	gbp1 (ENSCARG00000017071)	ENSCARG00000017040	gbp1 (ENSCARG00000016699)	ENSCARG00000016599	ebi3 (ENSCARG00000016579)	odf3l2a (ENSCARG00000016565)	keap1a (ENSCARG00000016555)	crlf1a (ENSCARG00000016527)	zgc:110158 (ENSCARG00000016148)	ZNF622 (ENSCARG00000016106)	d2hgdh (ENSCARG00000015626) #22	acvr1l (ENSCARG00000015593)	otomp (ENSCARG00000015580)	ENSCARG00000015571	hs6st1a (ENSCARG00000015565)	uggt1 (ENSCARG00000015117)	ENSCARG00000015039	epha4b (ENSCARG00000014908)	ENSCARG00000014887	ENSCARG00000014878	ENSCARG00000014866	ENSCARG00000014846	ENSCARG00000014826	fgf24 (ENSCARG00000014794)	npm1b (ENSCARG00000014777)	tlx2 (ENSCARG00000014759)
Cyprininae_a	ANCESTRAL SPECIES	149	ENSGT00940000154265.mc.l	ENSGT00940000154265.lc.a.i.a.a	ENSGT00940000154265.mc.k.b	ENSGT00940000154265.lc.b.b.a.a.a.a.b	ENSGT00940000156840.p	ENSGT00940000162297.c.b.b	ENSGT00940000154265.mc.k.a.a	ENSGT00940000154265.lc.a.j.a.a	ENSGT00940000160694.h.a	ENSGT00940000160050	ENSGT00940000160480.c.b.a	ENSGT00940000156569.a.b.a.c	ENSGT00940000165458.a	ENSGT00950000183049.C.a.a.h.b	ENSGT00390000018047.v	ENSGT00550000075086.a #22	ENSGT00940000166078.b	ENSGT00940000166763.b	ENSGT00950000183071.a.a.b.c.c.d	ENSGT00390000004600.b.a.j	ENSGT00940000165265.g.a.d	ENSGT00990000209937.b	ENSGT00990000208442.b	ENSGT00940000173713.g	ENSGT01030000235105.b.b	ENSGT00990000209992.A	ENSGT00990000208442.a.b	ENSGT00940000173713.h.a	ENSGT01060000253400	ENSGT01030000235105.a	ENSGT00940000156948.i.b.b
Common carp reference	MODERN SPECIES	29	trim55a (ENSCCRG00000020610)	ENSCCRG00000020617	ENSCCRG00000075496	ENSCCRG00000059073	ENSCCRG00000020619	ENSCCRG00000051785	ENSCCRG00000014852	gbp1 (ENSCCRG00000035122)	ENSCCRG00000055972	ebi3 (ENSCCRG00000044302)	odf3l2a (ENSCCRG00000044318)	crlf1a (ENSCCRG00000071906)	keap1a (ENSCCRG00000044328)	zgc:110158 (ENSCCRG00000011178)	ENSCCRG00000011191	d2hgdh (ENSCCRG00000011782) #22	acvr1l (ENSCCRG00000011267)	otomp (ENSCCRG00000011789)	hs6st1a (ENSCCRG00000082051)	uggt1 (ENSCCRG00000037592)	epha4b (ENSCCRG00000076007)	ENSCCRG00000054238	ENSCCRG00000080585	ENSCCRG00000065317	ENSCCRG00000066870	ENSCCRG00000082671	ENSCCRG00000077253	ENSCCRG00000035312	epha4a (ENSCCRG00000081582)	slc25a36a (ENSCCRG00000060891)	spsb4a (ENSCCRG00000044649)
Golden-line barbel	MODERN SPECIES	330	ENSSGRG00000028131	adhfe1 (ENSSGRG00000028130)	VCPIP1 (ENSSGRG00000028128)	ENSSGRG00000028127	gbp1 (ENSSGRG00000028121)	ENSSGRG00000028119	gbp1 (ENSSGRG00000028101)	ENSSGRG00000028099	ENSSGRG00000028096	ENSSGRG00000028094	ebi3 (ENSSGRG00000028093)	odf3l2a (ENSSGRG00000028092)	crlf1a (ENSSGRG00000028091)	keap1a (ENSSGRG00000028090)	zgc:110158 (ENSSGRG00000028089)	d2hgdh (ENSSGRG00000027937) #22	acvr1l (ENSSGRG00000027927)	otomp (ENSSGRG00000027919)	hs6st1a (ENSSGRG00000027913)	uggt1 (ENSSGRG00000027821)
Cyprininae	ANCESTRAL SPECIES	72	ENSGT00940000154265.mc.k.a.a	ENSGT00940000154265.lc.a.j.a.a	ENSGT00940000154265.mc.k.a.b	ENSGT00940000162297.c.a	ENSGT00940000154265.lc.a.j.a.b	ENSGT00940000160694.h.b	ENSGT00940000160050	ENSGT00940000160480.c.b.a	ENSGT00940000156569.a.b.a.c	ENSGT00940000165458.a	ENSGT00940000160480.c.b.b	ENSGT00940000156569.a.b.a.d	ENSGT00940000165458.b	ENSGT00950000183049.C.a.a.h.a	ENSGT00390000018047.u	ENSGT00550000075086.b #22	ENSGT00940000166078.a	ENSGT00940000166763.a	ENSGT00950000183071.a.a.b.c.c.c	ENSGT00390000004600.b.a.i	ENSGT00940000165265.g.a.c	ENSGT00990000209937.a.b	ENSGT00990000209937.a.a	ENSGT00990000209992.B	ENSGT00990000208442.a.a	ENSGT00940000173713.g	ENSGT01030000235105.a	ENSGT00940000156948.i.b.b	ENSGT00940000154369.g.a	ENSGT01030000234629.C.d.b	ENSGT00940000162556.D.b.a.a
Cyprininae_a	ANCESTRAL SPECIES	84							ENSGT00940000154265.mc.k.a.b	ENSGT00940000162297.c.a	ENSGT00940000154265.lc.a.j.a.b	ENSGT00940000160694.h.b	ENSGT00940000160480.c.b.b	ENSGT00940000156569.a.b.a.d	ENSGT00940000165458.b	ENSGT00950000183049.C.a.a.h.a	ENSGT00390000018047.u	ENSGT00550000075086.b #22	ENSGT00940000166078.a	ENSGT00940000166763.a	ENSGT00950000183071.a.a.b.c.c.c	ENSGT00390000004600.b.a.i	ENSGT00940000165265.g.a.c	ENSGT00990000209937.a.b	ENSGT00990000209937.a.a	ENSGT00990000209992.B	ENSGT00990000208442.a.a	ENSGT00940000173713.h.b.a	ENSGT01030000235105.b.a	ENSGT00940000156948.i.b.a	ENSGT00940000154369.g.a.d	ENSGT01030000234629.C.d.a	ENSGT00940000162556.D.b.a.b
Golden-line barbel	MODERN SPECIES	108	ENSSGRG00000054532	lhx8a (ENSSGRG00000054531)	lhx8a (ENSSGRG00000054530)	ENSSGRG00000054528	ENSSGRG00000054525	ENSSGRG00000054522	ENSSGRG00000054520	gbp1 (ENSSGRG00000054490)	HELZ2 (ENSSGRG00000054479)	ebi3 (ENSSGRG00000054478)	odf3l2a (ENSSGRG00000054477)	crlf1a (ENSSGRG00000054473)	keap1a (ENSSGRG00000054468)	zgc:110158 (ENSSGRG00000054461)	ZNF622 (ENSSGRG00000054460)	d2hgdh (ENSSGRG00000054459) #22	acvr1l (ENSSGRG00000054458)	otomp (ENSSGRG00000054456)	hs6st1a (ENSSGRG00000054454)	uggt1 (ENSSGRG00000054396)	ENSSGRG00000054350	TRAPPC8 (ENSSGRG00000054166)	opn7a (ENSSGRG00000054151)	b4galt6 (ENSSGRG00000054114)	ttr (ENSSGRG00000054108)	ENSSGRG00000054107	ENSSGRG00000054106	ENSSGRG00000054105	dsc2l (ENSSGRG00000054104)	si:dkey-5n18.1 (ENSSGRG00000054103)
Common carp reference	MODERN SPECIES	21	trim55a (ENSCCRG00000031000)	adhfe1 (ENSCCRG00000030828)	ENSCCRG00000030821	ENSCCRG00000057295	gbp1 (ENSCCRG00000033487)	ENSCCRG00000051788	ENSCCRG00000018119	gbp1 (ENSCCRG00000018101)	ENSCCRG00000071871	ENSCCRG00000079340	odf3l2a (ENSCCRG00000018067)	crlf1a (ENSCCRG00000018065)	keap1a (ENSCCRG00000015868)	zgc:110158 (ENSCCRG00000063165)	ENSCCRG00000011779	d2hgdh (ENSCCRG00000011246) #22	otomp (ENSCCRG00000079751)	acvr1l (ENSCCRG00000062115)	hs6st1a (ENSCCRG00000074522)	uggt1 (ENSCCRG00000002547)	epha4b (ENSCCRG00000077447)	ENSCCRG00000067743	ENSCCRG00000045104	ENSCCRG00000024391	ENSCCRG00000024388	ENSCCRG00000024385	ENSCCRG00000026063	ENSCCRG00000026069	si:ch211-122l24.6 (ENSCCRG00000082253)	ENSCCRG00000026157	epha4a (ENSCCRG00000078510)
Zebrafish	MODERN SPECIES	11	trim55a (ENSDARG00000029596)	ENSDARG00000093401	adhfe1 (ENSDARG00000053518)	ENSDARG00000095649	VCPIP1 (ENSDARG00000060177)	ENSDARG00000091628	gbp1 (ENSDARG00000038668)	ENSDARG00000038669	ENSDARG00000012600	ebi3 (ENSDARG00000053620)	odf3l2a (ENSDARG00000014209)	crlf1a (ENSDARG00000024365)	keap1a (ENSDARG00000016132)	SSBP4 (ENSDARG00000056490)	ZNF622 (ENSDARG00000014692)	d2hgdh (ENSDARG00000060210) #22	acvr1l (ENSDARG00000014986)	otomp (ENSDARG00000040306)	hs6st1a (ENSDARG00000054754)	uggt1 (ENSDARG00000054746)	epha4b (ENSDARG00000011600)	ccl34a.4 (ENSDARG00000090873)	ccl34a.3 (ENSDARG00000094983)	si:ch211-122l24.6 (ENSDARG00000112759)	ENSDARG00000112125	epha4a (ENSDARG00000054454)	slc25a36a (ENSDARG00000038731)	zgc:136870 (ENSDARG00000054837)	spsb4a (ENSDARG00000016084)	ENSDARG00000095040	clstn2a (ENSDARG00000060637)
Clupeiformes	ANCESTRAL SPECIES	377								ENSGT00440000033985	ENSGT00390000011072	ENSGT00920000149157.c	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a
Atlantic herring	MODERN SPECIES	14	ENSCHAG00000017670	dlg1b (ENSCHAG00000017806)	ENSCHAG00000021636	tfr1a (ENSCHAG00000021653)	ENSCHAG00000021910	ENSCHAG00000021940	ENSCHAG00000022066	ENSCHAG00000022623	ENSCHAG00000022636	ENSCHAG00000022721	ENSCHAG00000023278	ENSCHAG00000023296	ENSCHAG00000023316	ENSCHAG00000023749	adipoqb (ENSCHAG00000023950)	d2hgdh (ENSCHAG00000023960) #22	acvr1l (ENSCHAG00000024046)	otomp (ENSCHAG00000024069)	hs6st1a (ENSCHAG00000024080)	uggt1 (ENSCHAG00000024188)	ENSCHAG00000026010	ENSCHAG00000026016	ENSCHAG00000026021	SPSB4 (ENSCHAG00000026022)	slc25a36a (ENSCHAG00000026026)	epha4a (ENSCHAG00000026105)	ENSCHAG00000026588	ccl34a.3 (ENSCHAG00000026591)	ENSCHAG00000026597	ENSCHAG00000026599	ENSCHAG00000026601
Denticle herring	MODERN SPECIES	14	acsm3 (ENSDCDG00000000527)	EEF1AKMT4 (ENSDCDG00000000507)	camk2n1a (ENSDCDG00000000496)	mul1a (ENSDCDG00000000491)	alg3 (ENSDCDG00000000484)	VWA5B2 (ENSDCDG00000000464)	ENSDCDG00000000452	blvra (ENSDCDG00000000442)	wdr48b (ENSDCDG00000000407)	ebi3 (ENSDCDG00000000353)	odf3l2a (ENSDCDG00000000339)	crlf1a (ENSDCDG00000000327)	keap1a (ENSDCDG00000000314)	zgc:110158 (ENSDCDG00000000248)	ZNF622 (ENSDCDG00000032748)	d2hgdh (ENSDCDG00000032743) #22	acvr1l (ENSDCDG00000032726)	otomp (ENSDCDG00000032724)	ENSDCDG00000032723	ENSDCDG00000032722	hs6st1a (ENSDCDG00000032718)	uggt1 (ENSDCDG00000032456)	epha4b (ENSDCDG00000032143)	ENSDCDG00000032102	ENSDCDG00000032099	ENSDCDG00000032096	epha4a (ENSDCDG00000031988)	ENSDCDG00000031974	slc25a36a (ENSDCDG00000031968)	spsb4a (ENSDCDG00000031962)	clstn2a (ENSDCDG00000030858)
Euteleosteomorpha	ANCESTRAL SPECIES	210	ENSGT00390000018395	ENSGT00500000045074	ENSGT00940000163250.C	ENSGT00940000162569.b.k.b	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b	ENSGT00940000155885.a	ENSGT00940000155603.A.a.a.b	ENSGT00940000154630.a	ENSGT00940000159004.a	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a
Acanthomorphata	ANCESTRAL SPECIES	135	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Tiger tail seahorse	MODERN SPECIES	204	gna11b (ENSHCOG00000016239)	ENSHCOG00000016213	tpgs1 (ENSHCOG00000016205)	ISYNA1 (ENSHCOG00000016192)	pdcd10a (ENSHCOG00000016136)	SLITRK3 (ENSHCOG00000016103)	NRDC (ENSHCOG00000016077)	FAM163A (ENSHCOG00000016036)	ENSHCOG00000016031	odf3l2a (ENSHCOG00000016019)	crlf1a (ENSHCOG00000016009)	keap1a (ENSHCOG00000015989)	ENSHCOG00000015972	SSBP4 (ENSHCOG00000015968)	ENSHCOG00000015944	d2hgdh (ENSHCOG00000015937) #22	acvr1l (ENSHCOG00000015917)	otomp (ENSHCOG00000015908)	ENSHCOG00000015890	SHPRH (ENSHCOG00000000443)	SHD (ENSHCOG00000000441)	yju2 (ENSHCOG00000015785)	CARTPT (ENSHCOG00000015746)	MAP1S (ENSHCOG00000015706)	GADD45B (ENSHCOG00000015442)	gng7 (ENSHCOG00000015428)	diras1b (ENSHCOG00000015419)	ENSHCOG00000015412	ENSHCOG00000015398	ENSHCOG00000015370	ENSHCOG00000015352
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00530000064359.c.b.o.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00530000064359.c.b.o.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Cyprinodontiformes	ANCESTRAL SPECIES	21	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Aplocheiloidei	ANCESTRAL SPECIES	15	ENSGT00940000163250.C	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c	ENSGT00940000157267
Mangrove rivulus	MODERN SPECIES	1	ISYNA1 (ENSKMAG00000013477)	pdcd10a (ENSKMAG00000013442)	ENSKMAG00000013408	ENSKMAG00000013377	ENSKMAG00000013350	SLITRK3 (ENSKMAG00000013297)	NRDC (ENSKMAG00000013225)	FAM163A (ENSKMAG00000013206)	ENSKMAG00000013185	ebi3 (ENSKMAG00000013174)	odf3l2a (ENSKMAG00000013139)	crlf1a (ENSKMAG00000013097)	keap1a (ENSKMAG00000013048)	ENSKMAG00000012923	ELL (ENSKMAG00000012864)	d2hgdh (ENSKMAG00000012828) #22	acvr1l (ENSKMAG00000012798)	otomp (ENSKMAG00000012763)	hs6st1b (ENSKMAG00000012735)	uggt1 (ENSKMAG00000012658)	ENSKMAG00000012621	ola1 (ENSKMAG00000012576)	TRA2B (ENSKMAG00000012538)	pcnt (ENSKMAG00000012283)	atg9a (ENSKMAG00000012147)	ENSKMAG00000012112	ENSKMAG00000012048	ENSKMAG00000012027	sumo3b (ENSKMAG00000012006)	TSPEAR (ENSKMAG00000011978)	ENSKMAG00000011865
Turquoise killifish	MODERN SPECIES	1625	ISYNA1 (ENSNFUG00015020013)	PDCD10B (ENSNFUG00015019977)	ENSNFUG00015019961	SLITRK3 (ENSNFUG00015019956)	ENSNFUG00015019951	NRD1 (ENSNFUG00015017003)	FAM163A (ENSNFUG00015016816)	ENSNFUG00015016809	EBI3 (ENSNFUG00015016805)	odf3l2a (ENSNFUG00015016798)	crlf1a (ENSNFUG00015016783)	KEAP1A (ENSNFUG00015016588)	SSBP4 (ENSNFUG00015015082)	ENSNFUG00015014963	ELL (ENSNFUG00015014955)	D2HGDH (ENSNFUG00015014845) #22	ACVR1L (ENSNFUG00015014779)	OTOMP (ENSNFUG00015014755)	hs6st1b (ENSNFUG00015014626)	uggt1 (ENSNFUG00015014086)	ENSNFUG00015025387	ola1 (ENSNFUG00015025386)	TRA2B (ENSNFUG00015025384)	SENP2 (ENSNFUG00015025383)	ATG9A (ENSNFUG00015025378)	ifi44c1 (ENSNFUG00015025375)	GADD45BB (ENSNFUG00015025373)	GNG7 (ENSNFUG00015025372)	DIRAS1B (ENSNFUG00015025370)	Nfu_g_1_015059 (ENSNFUG00015025367)	ELAVL1 (ENSNFUG00015025365)
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p.f	ENSGT00530000064359.c.b.p.e	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Poecilia	ANCESTRAL SPECIES	10	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p.f	ENSGT00530000064359.c.b.p.e.b	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
NAME_6	ANCESTRAL SPECIES	3	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p.e.a	ENSGT00530000064359.c.b.p.e.b	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Amazon molly	MODERN SPECIES	260													SSBP4 (ENSPFOG00000016754)	ENSPFOG00000016740	ENSPFOG00000016714	d2hgdh (ENSPFOG00000016660) #22	acvr1l (ENSPFOG00000016625)	otomp (ENSPFOG00000016598)	hs6st1b (ENSPFOG00000016587)	uggt1 (ENSPFOG00000016300)	ENSPFOG00000016261	ola1 (ENSPFOG00000016213)	TRA2B (ENSPFOG00000016208)	ENSPFOG00000016205	pcnt (ENSPFOG00000016128)	atg9a (ENSPFOG00000016076)	ENSPFOG00000015993	ENSPFOG00000015983	ENSPFOG00000015982	TSPEAR (ENSPFOG00000015928)	ENSPFOG00000015786
Sailfin molly	MODERN SPECIES	553											crlf1a (ENSPLAG00000006515)	keap1a (ENSPLAG00000006565)	SSBP4 (ENSPLAG00000006593)	ENSPLAG00000006608	ENSPLAG00000006616	d2hgdh (ENSPLAG00000006655) #22	acvr1l (ENSPLAG00000006717)	otomp (ENSPLAG00000006763)	hs6st1b (ENSPLAG00000006790)
Guppy	MODERN SPECIES	453	ISYNA1 (ENSPREG00000010538)	pdcd10a (ENSPREG00000010515)	ENSPREG00000010501	ENSPREG00000010488	SLITRK3 (ENSPREG00000010471)	NRDC (ENSPREG00000010372)	FAM163A (ENSPREG00000010331)	ENSPREG00000010233	ebi3 (ENSPREG00000010198)	odf3l2a (ENSPREG00000010183)	crlf1a (ENSPREG00000010125)	keap1a (ENSPREG00000010089)	SSBP4 (ENSPREG00000009984)	ENSPREG00000009951	ENSPREG00000009938	d2hgdh (ENSPREG00000009919) #22	acvr1l (ENSPREG00000009883)	otomp (ENSPREG00000009862)	ENSPREG00000009849	plek2 (ENSPREG00000009799)	si:ch211-10a23.2 (ENSPREG00000009769)	zfyve26 (ENSPREG00000009462)	rdh12 (ENSPREG00000009340)	vti1b (ENSPREG00000009316)	arg2 (ENSPREG00000009289)	RBM25 (ENSPREG00000009228)	slc39a9 (ENSPREG00000009191)	PLEKHD1 (ENSPREG00000009160)	ENSPREG00000009110	smoc1 (ENSPREG00000009097)	ENSPREG00000009086
NAME_4	ANCESTRAL SPECIES	160					ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Mummichog	MODERN SPECIES	2458													ENSFHEG00000008704	ENSFHEG00000008734	ENSFHEG00000008712	d2hgdh (ENSFHEG00000008746) #22	acvr1l (ENSFHEG00000008759)	otomp (ENSFHEG00000008795)	hs6st1b (ENSFHEG00000008842)	uggt1 (ENSFHEG00000008962)	ENSFHEG00000008973	ola1 (ENSFHEG00000009030)	TRA2B (ENSFHEG00000009235)	ENSFHEG00000009260	ENSFHEG00000009269	pcnt (ENSFHEG00000009485)	tbce (ENSFHEG00000000220)	atg9a (ENSFHEG00000009644)	ENSFHEG00000009764	ENSFHEG00000009781	sumo3b (ENSFHEG00000009799)
Sheepshead minnow	MODERN SPECIES	515					si:dkey-56i24.1 (ENSCVAG00000016194)	SLITRK3 (ENSCVAG00000016229)	NRDC (ENSCVAG00000016290)	fam163ab (ENSCVAG00000016320)	ENSCVAG00000016353	ebi3 (ENSCVAG00000016369)	odf3l2a (ENSCVAG00000016388)	crlf1a (ENSCVAG00000016426)	keap1a (ENSCVAG00000016516)	SSBP4 (ENSCVAG00000016706)	ENSCVAG00000016765	d2hgdh (ENSCVAG00000016817) #22	acvr1l (ENSCVAG00000016895)	otomp (ENSCVAG00000016929)
Oryzias	ANCESTRAL SPECIES	3	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p.g.a.a	ENSGT00530000064359.c.b.p.g.a.b	ENSGT00530000064359.c.b.p.g.b	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c	ENSGT00940000157267
Oryzias_a	ANCESTRAL SPECIES	11	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p.g.a.a	ENSGT00530000064359.c.b.p.g.a.b	ENSGT00530000064359.c.b.p.g.b.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c	ENSGT00940000157267
Chinese medaka	MODERN SPECIES	21	ENSOSIG00000002627	ISYNA1 (ENSOSIG00000002649)	pdcd10b (ENSOSIG00000003038)	ENSOSIG00000003052	ENSOSIG00000003058	SLITRK3 (ENSOSIG00000003064)	NRDC (ENSOSIG00000003121)	ENSOSIG00000004691	ENSOSIG00000004694	ebi3 (ENSOSIG00000004696)	odf3l2a (ENSOSIG00000004701)	crlf1a (ENSOSIG00000004712)	keap1a (ENSOSIG00000004741)	ENSOSIG00000004828	ELL (ENSOSIG00000006770)	d2hgdh (ENSOSIG00000006775) #22	acvr1l (ENSOSIG00000006777)	otomp (ENSOSIG00000006781)	hs6st1b (ENSOSIG00000006785)	uggt1 (ENSOSIG00000006789)	ola1 (ENSOSIG00000006873)	ENSOSIG00000006892	ENSOSIG00000006900	atg9a (ENSOSIG00000006904)	ENSOSIG00000006912	ENSOSIG00000007230	sumo3a (ENSOSIG00000007235)	TSPEAR (ENSOSIG00000007399)	ENSOSIG00000007401	fabp7a (ENSOSIG00000007402)	ENSOSIG00000007407
Japanese Medaka HdrR	MODERN SPECIES	14	pdcd10a (ENSORLG00000022553)	ENSORLG00000025778	ENSORLG00000027988	ENSORLG00000014068	ENSORLG00000025053	ENSORLG00000014064	NRDC (ENSORLG00000014051)	ENSORLG00000022510	ENSORLG00000014028	ebi3 (ENSORLG00000023498)	odf3l2a (ENSORLG00000014016)	crlf1a (ENSORLG00000014003)	keap1a (ENSORLG00000013993)	ENSORLG00000013936	ENSORLG00000013871	d2hgdh (ENSORLG00000013844) #22	otomp (ENSORLG00000013815)	acvr1l (ENSORLG00000013834)	ENSORLG00000027515	hs6st1b (ENSORLG00000013805)	uggt1 (ENSORLG00000013749)	ENSORLG00000013706	ola1 (ENSORLG00000013788)	ENSORLG00000013780	ENSORLG00000013689	pcnt (ENSORLG00000013666)	atg9a (ENSORLG00000013642)	ENSORLG00000027840	ENSORLG00000013589	ENSORLG00000028257	sumo3a (ENSORLG00000013523)
Oryzias_b	ANCESTRAL SPECIES	12	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p.g.a.a	ENSGT00530000064359.c.b.p.g.a.b.a	ENSGT00530000064359.c.b.p.g.b	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.a	ENSGT00510000047718.c	ENSGT00940000157267
Javanese ricefish	MODERN SPECIES	14	tpgs1 (ENSOJAG00000014704)	ISYNA1 (ENSOJAG00000014717)	pdcd10a (ENSOJAG00000014883)	ENSOJAG00000014997	ENSOJAG00000015013	SLITRK3 (ENSOJAG00000015023)	NRDC (ENSOJAG00000015160)	ENSOJAG00000017239	ENSOJAG00000017245	ebi3 (ENSOJAG00000017263)	odf3l2a (ENSOJAG00000017270)	crlf1a (ENSOJAG00000017298)	keap1a (ENSOJAG00000017350)	ENSOJAG00000017528	ENSOJAG00000018438	d2hgdh (ENSOJAG00000018465) #22	acvr1l (ENSOJAG00000018629)	otomp (ENSOJAG00000018670)	ENSOJAG00000018673	hs6st1b (ENSOJAG00000018694)	uggt1 (ENSOJAG00000018799)	ENSOJAG00000020238	ola1 (ENSOJAG00000020246)	ENSOJAG00000020271	ENSOJAG00000020281	atg9a (ENSOJAG00000020353)	ENSOJAG00000020499	ENSOJAG00000020911	ENSOJAG00000020917	TSPEAR (ENSOJAG00000020927)	fabp7a (ENSOJAG00000020941)
Indian medaka	MODERN SPECIES		ENSOMEG00000011854	ENSOMEG00000011860	ENSOMEG00000011886	ENSOMEG00000011921	SLITRK3 (ENSOMEG00000011935)	NRDC (ENSOMEG00000012069)	ENSOMEG00000012098	ENSOMEG00000012110	ebi3 (ENSOMEG00000012120)	odf3l2a (ENSOMEG00000012136)	crlf1a (ENSOMEG00000012181)	ENSOMEG00000012198	ENSOMEG00000012212	ENSOMEG00000012274	ENSOMEG00000012322	d2hgdh (ENSOMEG00000012390) #22	acvr1l (ENSOMEG00000012435)	otomp (ENSOMEG00000012488)	ENSOMEG00000012518	hs6st1b (ENSOMEG00000001025)	ENSOMEG00000012565	ENSOMEG00000012606	ENSOMEG00000012623	ENSOMEG00000012714	ola1 (ENSOMEG00000012796)	ENSOMEG00000012826	ENSOMEG00000012852	pcnt (ENSOMEG00000013043)	atg9a (ENSOMEG00000013216)	ENSOMEG00000013326	ENSOMEG00000013356
Ovalentaria_B	ANCESTRAL SPECIES	18	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00530000064359.c.b.o.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c
Pomacentridae	ANCESTRAL SPECIES	19	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Pomacentridae_A	ANCESTRAL SPECIES	19	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b.a	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Amphiprion	ANCESTRAL SPECIES	12	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b.a	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Clown anemonefish	MODERN SPECIES	1923																d2hgdh (ENSAOCG00000021501) #22	acvr1l (ENSAOCG00000021456)	otomp (ENSAOCG00000021443)
Orange clownfish	MODERN SPECIES	9	tpgs1 (ENSAPEG00000013321)	ISYNA1 (ENSAPEG00000013327)	pdcd10a (ENSAPEG00000013367)	si:dkey-56i24.1 (ENSAPEG00000013397)	SLITRK3 (ENSAPEG00000013403)	NRDC (ENSAPEG00000013447)	FAM163A (ENSAPEG00000013635)	ENSAPEG00000013644	ebi3 (ENSAPEG00000013656)	odf3l2a (ENSAPEG00000013678)	crlf1a (ENSAPEG00000013716)	keap1a (ENSAPEG00000013761)	SSBP4 (ENSAPEG00000013777)	ENSAPEG00000013844	ENSAPEG00000013891	d2hgdh (ENSAPEG00000013915) #22	acvr1l (ENSAPEG00000013964)	otomp (ENSAPEG00000013993)	hs6st1b (ENSAPEG00000014035)	uggt1 (ENSAPEG00000014074)	ENSAPEG00000014249	ola1 (ENSAPEG00000014283)	TRA2B (ENSAPEG00000014341)	ENSAPEG00000014362	ENSAPEG00000014411	ENSAPEG00000014637	atg9a (ENSAPEG00000014643)	ENSAPEG00000014709	ENSAPEG00000014846	sumo3a (ENSAPEG00000014857)	TSPEAR (ENSAPEG00000014885)
Spiny chromis	MODERN SPECIES	9			pdcd10a (ENSAPOG00000021329)	si:dkey-56i24.1 (ENSAPOG00000021350)	SLITRK3 (ENSAPOG00000021371)	NRDC (ENSAPOG00000021423)	ENSAPOG00000021444	ENSAPOG00000021468	ebi3 (ENSAPOG00000021499)	odf3l2a (ENSAPOG00000021531)	crlf1a (ENSAPOG00000021611)	keap1a (ENSAPOG00000021664)	SSBP4 (ENSAPOG00000021699)	ENSAPOG00000021714	ENSAPOG00000021737	d2hgdh (ENSAPOG00000021787) #22	acvr1l (ENSAPOG00000021807)	otomp (ENSAPOG00000021844)	hs6st1b (ENSAPOG00000021875)	uggt1 (ENSAPOG00000021954)	bri3bp (ENSAPOG00000021988)	wdr31 (ENSAPOG00000022023)	ENSAPOG00000022062	mibp2 (ENSAPOG00000022093)	GNA14 (ENSAPOG00000022114)	vps13a (ENSAPOG00000023260)	ENSAPOG00000023325	FOXB2 (ENSAPOG00000023340)	ENSAPOG00000023424	ENSAPOG00000023438	EPHB3 (ENSAPOG00000023574)
Bicolor damselfish	MODERN SPECIES	1000						ENSSPAG00000015605	ENSSPAG00000015622	ebi3 (ENSSPAG00000015640)	odf3l2a (ENSSPAG00000015653)	crlf1a (ENSSPAG00000015673)	keap1a (ENSSPAG00000015722)	ENSSPAG00000015748	ENSSPAG00000015786	ENSSPAG00000015797	ENSSPAG00000015813	d2hgdh (ENSSPAG00000015833) #22	acvr1l (ENSSPAG00000015870)	otomp (ENSSPAG00000015888)
Cichlidae	ANCESTRAL SPECIES	22	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.b.a	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT01100000264078.a.a	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.b.a	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT01100000264078.a.a	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.b.a	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.b.a.a.a	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Haplochromini_B	ANCESTRAL SPECIES	13	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.b.a.a.a	ENSGT00530000064359.c.b.o.a.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00510000047718.c	ENSGT00940000157267
Zebra mbuna	MODERN SPECIES	1101	ISYNA1 (ENSMZEG00005000512)	pdcd10a (ENSMZEG00005000561)	ENSMZEG00005000602	ENSMZEG00005000616	SLITRK3 (ENSMZEG00005000625)	NRDC (ENSMZEG00005000657)	ENSMZEG00005000678	ENSMZEG00005000686	ebi3 (ENSMZEG00005000696)	odf3l2a (ENSMZEG00005000732)	crlf1a (ENSMZEG00005000757)	keap1a (ENSMZEG00005000769)	ENSMZEG00005000818	ENSMZEG00005000836	ENSMZEG00005000851	d2hgdh (ENSMZEG00005000872) #22	acvr1l (ENSMZEG00005000913)	otomp (ENSMZEG00005000963)	hs6st1b (ENSMZEG00005000997)	uggt1 (ENSMZEG00005001047)	ENSMZEG00005001190	ola1 (ENSMZEG00005001203)	TRA2B (ENSMZEG00005001232)	ENSMZEG00005001241	pcnt (ENSMZEG00005001272)	atg9a (ENSMZEG00005001449)	ENSMZEG00005001497	ENSMZEG00005001609	sumo3b (ENSMZEG00005001623)	TSPEAR (ENSMZEG00005001651)	ENSMZEG00005001723
Eastern happy	MODERN SPECIES	10	ENSACLG00000010080	ENSACLG00000010084	ENSACLG00000010100	SLITRK3 (ENSACLG00000010115)	NRDC (ENSACLG00000010437)	ENSACLG00000010507	ENSACLG00000010514	ENSACLG00000010523	ebi3 (ENSACLG00000010537)	odf3l2a (ENSACLG00000010595)	crlf1a (ENSACLG00000010610)	keap1a (ENSACLG00000010637)	ENSACLG00000010660	ENSACLG00000010684	ENSACLG00000010689	d2hgdh (ENSACLG00000010697) #22	acvr1l (ENSACLG00000010712)	otomp (ENSACLG00000010733)	hs6st1b (ENSACLG00000010812)	uggt1 (ENSACLG00000010862)	ENSACLG00000011044	ola1 (ENSACLG00000011067)	TRA2B (ENSACLG00000011095)	ENSACLG00000011110	pcnt (ENSACLG00000011373)	atg9a (ENSACLG00000011454)	ENSACLG00000011479	ENSACLG00000011512	sumo3b (ENSACLG00000011519)	TSPEAR (ENSACLG00000011526)	ENSACLG00000011534
P. nyererei	MODERN SPECIES	305	pdcd10a (ENSPNYG00000013601)	ENSPNYG00000013631	ENSPNYG00000013669	SLITRK3 (ENSPNYG00000013708)	NRDC (ENSPNYG00000013827)	ENSPNYG00000014282	ENSPNYG00000014310	ENSPNYG00000014393	ebi3 (ENSPNYG00000014420)	odf3l2a (ENSPNYG00000014438)	crlf1a (ENSPNYG00000014455)	keap1a (ENSPNYG00000014474)	ENSPNYG00000014520	ENSPNYG00000014566	ENSPNYG00000014576	d2hgdh (ENSPNYG00000014600) #22	acvr1l (ENSPNYG00000014634)	otomp (ENSPNYG00000014659)	hs6st1b (ENSPNYG00000014686)	uggt1 (ENSPNYG00000014757)	ENSPNYG00000014919	ola1 (ENSPNYG00000014943)	TRA2B (ENSPNYG00000014955)	ENSPNYG00000014980	pcnt (ENSPNYG00000015024)	atg9a (ENSPNYG00000015233)	ENSPNYG00000015305	ENSPNYG00000015393	sumo3b (ENSPNYG00000015401)	TSPEAR (ENSPNYG00000015434)	ENSPNYG00000015549
Nile tilapia	MODERN SPECIES	10	ENSONIG00000029408	ENSONIG00000037991	ENSONIG00000038946	ENSONIG00000027821	SLITRK3 (ENSONIG00000001162)	NRDC (ENSONIG00000001167)	FAM163A (ENSONIG00000031507)	ENSONIG00000001192	ENSONIG00000001198	odf3l2a (ENSONIG00000001196)	crlf1a (ENSONIG00000001204)	keap1a (ENSONIG00000001205)	ENSONIG00000001215	ENSONIG00000031220	ENSONIG00000001226	d2hgdh (ENSONIG00000001232) #22	acvr1l (ENSONIG00000001235)	otomp (ENSONIG00000001240)	ENSONIG00000034367	hs6st1b (ENSONIG00000001241)	uggt1 (ENSONIG00000001242)	ENSONIG00000001262	ola1 (ENSONIG00000001265)	TRA2B (ENSONIG00000001274)	ENSONIG00000034409	ENSONIG00000039936	atg9a (ENSONIG00000001285)	ENSONIG00000001298	ENSONIG00000032503	TSPEAR (ENSONIG00000001315)	ENSONIG00000001318
Midas cichlid	MODERN SPECIES	231	ISYNA1 (ENSACIG00000017814)	pdcd10a (ENSACIG00000017807)	ENSACIG00000017785	ENSACIG00000017770	SLITRK3 (ENSACIG00000017747)	NRDC (ENSACIG00000017430)	FAM163A (ENSACIG00000017386)	ENSACIG00000017320	ebi3 (ENSACIG00000017289)	odf3l2a (ENSACIG00000017275)	crlf1a (ENSACIG00000017261)	keap1a (ENSACIG00000017236)	SSBP4 (ENSACIG00000017215)	ENSACIG00000017202	ENSACIG00000017088	d2hgdh (ENSACIG00000017057) #22	acvr1l (ENSACIG00000016967)	otomp (ENSACIG00000016937)	hs6st1b (ENSACIG00000016921)	uggt1 (ENSACIG00000016835)	ENSACIG00000016803	ola1 (ENSACIG00000016766)	TRA2B (ENSACIG00000016739)	ENSACIG00000016713	pcnt (ENSACIG00000016414)	ENSACIG00000016378	atg9a (ENSACIG00000016340)	ENSACIG00000016252	sumo3b (ENSACIG00000016237)	TSPEAR (ENSACIG00000016211)	ENSACIG00000016148
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00530000064359.c.b.o.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00530000064359.c.b.o.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.a	ENSGT00510000047718.c
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00950000183049.C.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.a	ENSGT00510000047718.c
Climbing perch	MODERN SPECIES	13	ENSATEG00000008521	ENSATEG00000008703	ENSATEG00000008544	ENSATEG00000004181	ENSATEG00000029817	ENSATEG00000008719	ENSATEG00000008762	ENSATEG00000008789	ENSATEG00000008838	ebi3 (ENSATEG00000008848)	odf3l2a (ENSATEG00000008889)	crlf1a (ENSATEG00000008917)	keap1a (ENSATEG00000008969)	ENSATEG00000009018	ENSATEG00000009066	d2hgdh (ENSATEG00000028489) #22	acvr1l (ENSATEG00000009120)	otomp (ENSATEG00000009157)	ENSATEG00000009178	uggt1 (ENSATEG00000009227)	ENSATEG00000009325	ENSATEG00000009394	ENSATEG00000009454	ENSATEG00000009470	ENSATEG00000009914	atg9a (ENSATEG00000009971)	ENSATEG00000010059	ENSATEG00000010197	sumo3a (ENSATEG00000019871)	ENSATEG00000010230	ENSATEG00000010263
Siamese fighting fish	MODERN SPECIES	12	ENSBSLG00000024751	ENSBSLG00000024745	ENSBSLG00000024735	SLITRK3 (ENSBSLG00000024726)	NRDC (ENSBSLG00000023720)	FAM163A (ENSBSLG00000023609)	ENSBSLG00000023598	odf3l2a (ENSBSLG00000023577)	ENSBSLG00000023571	crlf1a (ENSBSLG00000023494)	ENSBSLG00000023481	keap1a (ENSBSLG00000023461)	SSBP4 (ENSBSLG00000022929)	ENSBSLG00000022867	ENSBSLG00000022810	d2hgdh (ENSBSLG00000022516) #22	acvr1l (ENSBSLG00000022490)	otomp (ENSBSLG00000022464)	hs6st1b (ENSBSLG00000022354)	uggt1 (ENSBSLG00000022072)	ENSBSLG00000022019	ola1 (ENSBSLG00000021790)	TRA2B (ENSBSLG00000021742)	ENSBSLG00000021705	pcnt (ENSBSLG00000021205)	zgc:112416 (ENSBSLG00000020378)	atg9a (ENSBSLG00000019864)	ENSBSLG00000019483	ENSBSLG00000019463	ENSBSLG00000019412	TSPEAR (ENSBSLG00000019301)
Zig-zag eel	MODERN SPECIES	14	ENSMAMG00000003050	ENSMAMG00000003065	ENSMAMG00000003081	ENSMAMG00000025424	ENSMAMG00000003137	ENSMAMG00000003192	ENSMAMG00000003219	ENSMAMG00000003230	ebi3 (ENSMAMG00000003260)	odf3l2a (ENSMAMG00000003268)	crlf1a (ENSMAMG00000003302)	keap1a (ENSMAMG00000003345)	ENSMAMG00000003379	ENSMAMG00000025616	ENSMAMG00000003424	d2hgdh (ENSMAMG00000003448) #22	acvr1l (ENSMAMG00000003474)	otomp (ENSMAMG00000003486)	ENSMAMG00000003527	uggt1 (ENSMAMG00000003544)	ENSMAMG00000003672	ENSMAMG00000003717	ENSMAMG00000003753	ENSMAMG00000003776	ENSMAMG00000004115	atg9a (ENSMAMG00000004137)	ENSMAMG00000004167	ENSMAMG00000004297	sumo3a (ENSMAMG00000004310)	ENSMAMG00000004336	ENSMAMG00000004446
Carangaria	ANCESTRAL SPECIES	10	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00530000064359.c.b.o.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Seriola	ANCESTRAL SPECIES	3	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c
Greater amberjack	MODERN SPECIES	62	ISYNA1 (ENSSDUG00000012948)	pdcd10a (ENSSDUG00000012988)	ENSSDUG00000013024	ENSSDUG00000013066	SLITRK3 (ENSSDUG00000013078)	NRDC (ENSSDUG00000013108)	FAM163A (ENSSDUG00000013155)	ENSSDUG00000013170	ebi3 (ENSSDUG00000013261)	odf3l2a (ENSSDUG00000013302)	crlf1a (ENSSDUG00000013336)	keap1a (ENSSDUG00000013386)	ENSSDUG00000013426	ENSSDUG00000013458	ENSSDUG00000013474	d2hgdh (ENSSDUG00000013492) #22	acvr1l (ENSSDUG00000013523)	otomp (ENSSDUG00000013538)	hs6st1b (ENSSDUG00000013575)	uggt1 (ENSSDUG00000013603)	ENSSDUG00000013686	ola1 (ENSSDUG00000013714)	TRA2B (ENSSDUG00000013749)	ENSSDUG00000013759	pcnt (ENSSDUG00000013810)	zgc:112416 (ENSSDUG00000014069)	atg9a (ENSSDUG00000014164)	ENSSDUG00000014240	ENSSDUG00000014311	ENSSDUG00000014318	TSPEAR (ENSSDUG00000014330)
Yellowtail amberjack	MODERN SPECIES	3136	ENSSLDG00000001206	pdcd10a (ENSSLDG00000001229)	ENSSLDG00000001266	ENSSLDG00000001327	SLITRK3 (ENSSLDG00000001358)	NRDC (ENSSLDG00000001379)	FAM163A (ENSSLDG00000001397)	ENSSLDG00000001403	ebi3 (ENSSLDG00000001416)	odf3l2a (ENSSLDG00000001469)	crlf1a (ENSSLDG00000001488)	keap1a (ENSSLDG00000001548)	SSBP4 (ENSSLDG00000001618)	ENSSLDG00000001666	ENSSLDG00000001696	d2hgdh (ENSSLDG00000001719) #22
Barramundi perch	MODERN SPECIES	99	ISYNA1 (ENSLCAG00010014670)	PDCD10 (ENSLCAG00010014688)	si:dkey-56i24.1 (ENSLCAG00010014718)	SLITRK3 (ENSLCAG00010014756)	NRDC (ENSLCAG00010014985)	FAM163A (ENSLCAG00010015727)	ENSLCAG00010015735	ENSLCAG00010015765	odf3l2a (ENSLCAG00010015775)	crlf1a (ENSLCAG00010015780)	keap1a (ENSLCAG00010015791)	ENSLCAG00010015816	ENSLCAG00010015829	ENSLCAG00010015830	ENSLCAG00010015834	d2hgdh (ENSLCAG00010015841) #22	acvr1l (ENSLCAG00010015849)	otomp (ENSLCAG00010015857)	hs6st1b (ENSLCAG00010015864)	uggt1 (ENSLCAG00010015970)	ENSLCAG00010016383	ola1 (ENSLCAG00010016395)	TRA2B (ENSLCAG00010016418)	ENSLCAG00010016424	zgc:112416 (ENSLCAG00010016440)	atg9a (ENSLCAG00010016447)	ENSLCAG00010016502	ENSLCAG00010016689	sumo3a (ENSLCAG00010016693)	TSPEAR (ENSLCAG00010016705)	ENSLCAG00010016720
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k	ENSGT00510000047718.c	ENSGT00940000157267
Turbot	MODERN SPECIES	8	ENSSMAG00000029682	ENSSMAG00000017008	ENSSMAG00000017048	ENSSMAG00000017082	ENSSMAG00000017098	ENSSMAG00000017108	ENSSMAG00000017231	ENSSMAG00000017235	ebi3 (ENSSMAG00000017254)	odf3l2a (ENSSMAG00000017287)	crlf1a (ENSSMAG00000017309)	keap1a (ENSSMAG00000017380)	ENSSMAG00000017406	ENSSMAG00000017441	ENSSMAG00000037066	d2hgdh (ENSSMAG00000017454) #22	acvr1l (ENSSMAG00000017497)	otomp (ENSSMAG00000017539)	ENSSMAG00000017551	uggt1 (ENSSMAG00000017581)	ENSSMAG00000017630	ENSSMAG00000017661	ENSSMAG00000017702	ENSSMAG00000017717	ENSSMAG00000017741	atg9a (ENSSMAG00000018039)	ENSSMAG00000018133	pttg1ipa (ENSSMAG00000031719)	ENSSMAG00000018266	ENSSMAG00000018321	fabp7a (ENSSMAG00000018351)
Tongue sole	MODERN SPECIES		ENSCSEG00000005206	ENSCSEG00000005213	ENSCSEG00000005215	ISYNA1 (ENSCSEG00000005218)	pdcd10a (ENSCSEG00000005222)	si:dkey-56i24.1 (ENSCSEG00000005229)	SLITRK3 (ENSCSEG00000005235)	NRDC (ENSCSEG00000005245)	ENSCSEG00000005295	ebi3 (ENSCSEG00000005299)	odf3l2a (ENSCSEG00000005314)	crlf1a (ENSCSEG00000005317)	keap1a (ENSCSEG00000005323)	SSBP4 (ENSCSEG00000005331)	ENSCSEG00000005338	d2hgdh (ENSCSEG00000005345) #22	acvr1l (ENSCSEG00000005351)	otomp (ENSCSEG00000005362)	hs6st1b (ENSCSEG00000005379)	uggt1 (ENSCSEG00000005390)	ENSCSEG00000005431	ola1 (ENSCSEG00000005434)	GRM1 (ENSCSEG00000005446)	SHPRH (ENSCSEG00000005452)	ENSCSEG00000005493	fbxo30a (ENSCSEG00000005500)	stx11a (ENSCSEG00000005503)	RPS6KA5 (ENSCSEG00000006322)	hadhab (ENSCSEG00000006477)	ENSCSEG00000006512	ENSCSEG00000006518
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00510000047718.c
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.a	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00510000047718.c
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.a.f	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00510000047718.c
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.a.f	ENSGT00530000064359.c.b.o.a.e.b	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b.d	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00510000047718.c
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	16	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.a.f	ENSGT00530000064359.c.b.o.a.e.b	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b.d	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00510000047718.c
European seabass	MODERN SPECIES	2	ENSDLAG00005013126	ENSDLAG00005013060	ENSDLAG00005031394	ENSDLAG00005028316	ENSDLAG00005013044	ENSDLAG00005013034	ENSDLAG00005010223	ENSDLAG00005032040	ebi3 (ENSDLAG00005010114)	odf3l2a (ENSDLAG00005010111)	crlf1a (ENSDLAG00005010017)	keap1a (ENSDLAG00005009923)	ENSDLAG00005033152	ENSDLAG00005009894	ENSDLAG00005009882	d2hgdh (ENSDLAG00005009591) #22	acvr1l (ENSDLAG00005009489)	otomp (ENSDLAG00005009478)	ENSDLAG00005009425	uggt1 (ENSDLAG00005008037)	ENSDLAG00005007955	ENSDLAG00005007837	ENSDLAG00005032411	ENSDLAG00005007783	atg9a (ENSDLAG00005007653)	ENSDLAG00005007433	ENSDLAG00005029107	ENSDLAG00005007352	ENSDLAG00005007273	fabp7a (ENSDLAG00005027308)	ENSDLAG00005032112
Large yellow croaker	MODERN SPECIES	495	pdcd10a (ENSLCRG00005017128)	PDCD10 (ENSLCRG00005001432)	ENSLCRG00005001442	SLITRK3 (ENSLCRG00005001452)	NRDC (ENSLCRG00005001922)	ENSLCRG00005007963	FAM163A (ENSLCRG00005007964)	ENSLCRG00005007965	ebi3 (ENSLCRG00005007969)	odf3l2a (ENSLCRG00005007971)	crlf1a (ENSLCRG00005007981)	keap1a (ENSLCRG00005007995)	ENSLCRG00005008413	ENSLCRG00005008482	ENSLCRG00005008484	d2hgdh (ENSLCRG00005008486) #22	acvr1l (ENSLCRG00005008695)	otomp (ENSLCRG00005008923)	hs6st1b (ENSLCRG00005008924)	uggt1 (ENSLCRG00005008936)	ENSLCRG00005009067	ola1 (ENSLCRG00005009072)	TRA2B (ENSLCRG00005009291)	ENSLCRG00005009295	zgc:112416 (ENSLCRG00005009300)	atg9a (ENSLCRG00005009303)	ENSLCRG00005009335	ENSLCRG00005011487	ENSLCRG00005011490	TSPEAR (ENSLCRG00005011497)	ENSLCRG00005011511
Gilthead seabream	MODERN SPECIES	7	ISYNA1 (ENSSAUG00010009829)	pdcd10a (ENSSAUG00010009819)	ENSSAUG00010009814	ENSSAUG00010009812	SLITRK3 (ENSSAUG00010009809)	NRDC (ENSSAUG00010025795)	fam163ab (ENSSAUG00010025767)	ENSSAUG00010025765	ebi3 (ENSSAUG00010025764)	odf3l2a (ENSSAUG00010025763)	crlf1a (ENSSAUG00010025762)	keap1a (ENSSAUG00010025753)	SSBP4 (ENSSAUG00010025749)	ENSSAUG00010025746	ENSSAUG00010025743	d2hgdh (ENSSAUG00010025739) #22	acvr1l (ENSSAUG00010025730)	otomp (ENSSAUG00010025729)	hs6st1b (ENSSAUG00010025723)	uggt1 (ENSSAUG00010025590)	ENSSAUG00010025581	ola1 (ENSSAUG00010025576)	TRA2B (ENSSAUG00010025553)	ENSSAUG00010025552	ENSSAUG00010025541	smoc1 (ENSSAUG00010025535)	ENSSAUG00010025533	PLEKHD1 (ENSSAUG00010025529)	slc39a9 (ENSSAUG00010025526)	RBM25 (ENSSAUG00010025525)	arg2 (ENSSAUG00010025521)
Perciformes	ANCESTRAL SPECIES	12	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.a.f	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00510000047718.c	ENSGT00940000157267
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.a.f	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00510000047718.c	ENSGT00940000157267
Pike perch	MODERN SPECIES	24	ISYNA1 (ENSSLUG00000025641)	pdcd10a (ENSSLUG00000025653)	ENSSLUG00000025659	ENSSLUG00000025661	NRDC (ENSSLUG00000025718)	FAM163A (ENSSLUG00000025810)	ENSSLUG00000025812	ebi3 (ENSSLUG00000025814)	odf3l2a (ENSSLUG00000005218)	crlf1a (ENSSLUG00000005244)	keap1a (ENSSLUG00000005290)	ENSSLUG00000005368	ENSSLUG00000005381	ENSSLUG00000005419	ENSSLUG00000005431	d2hgdh (ENSSLUG00000005451) #22	acvr1l (ENSSLUG00000005508)	otomp (ENSSLUG00000005563)	hs6st1b (ENSSLUG00000005585)	uggt1 (ENSSLUG00000005775)	ENSSLUG00000008173	ola1 (ENSSLUG00000008182)	TRA2B (ENSSLUG00000008202)	ENSSLUG00000008209	ENSSLUG00000008218	atg9a (ENSSLUG00000008244)	ENSSLUG00000008287	ENSSLUG00000008296	ENSSLUG00000008321	ENSSLUG00000008337	TSPEAR (ENSSLUG00000008375)
Channel bull blenny	MODERN SPECIES	14	tpgs1 (ENSCGOG00000024157)	ISYNA1 (ENSCGOG00000024162)	pdcd10a (ENSCGOG00000024206)	si:dkey-56i24.1 (ENSCGOG00000024226)	SLITRK3 (ENSCGOG00000024227)	NRDC (ENSCGOG00000024290)	FAM163A (ENSCGOG00000024436)	ENSCGOG00000024438	ebi3 (ENSCGOG00000024441)	odf3l2a (ENSCGOG00000024442)	crlf1a (ENSCGOG00000024443)	keap1a (ENSCGOG00000024445)	SSBP4 (ENSCGOG00000024454)	ENSCGOG00000024458	ENSCGOG00000024459	d2hgdh (ENSCGOG00000024464) #22	acvr1l (ENSCGOG00000024483)	otomp (ENSCGOG00000024508)	hs6st1b (ENSCGOG00000024510)	uggt1 (ENSCGOG00000024532)	ENSCGOG00000024554	ola1 (ENSCGOG00000024558)	TRA2B (ENSCGOG00000024584)	ENSCGOG00000024585	ENSCGOG00000024592	atg9a (ENSCGOG00000024593)	ENSCGOG00000024603	ENSCGOG00000024638	ENSCGOG00000024639	TSPEAR (ENSCGOG00000024640)	ENSCGOG00000024642
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.o.a.f	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00390000011514	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00510000047718.c	ENSGT00940000157267
Lumpfish	MODERN SPECIES	14	ap5s1 (ENSCLMG00005014881)	gfra4a (ENSCLMG00005014879)	ENSCLMG00005014877	ATRN (ENSCLMG00005014797)	EIF2AK3 (ENSCLMG00005014378)	rpia (ENSCLMG00005014367)	slc4a11 (ENSCLMG00005014040)	dnaaf9 (ENSCLMG00005014012)	ENSCLMG00005014002	ENSCLMG00005014000	foxi2 (ENSCLMG00005013997)	ENSCLMG00005013994	fgfr3 (ENSCLMG00005007355)	letm1 (ENSCLMG00005007206)	nsd2 (ENSCLMG00005005973)	d2hgdh (ENSCLMG00005005926) #22	acvr1l (ENSCLMG00005005907)	otomp (ENSCLMG00005005903)	ENSCLMG00005005902	hs6st1b (ENSCLMG00005005851)	uggt1 (ENSCLMG00005005178)	ENSCLMG00005005163	ola1 (ENSCLMG00005004853)	TRA2B (ENSCLMG00005004845)	ENSCLMG00005004839	ENSCLMG00005004838	atg9a (ENSCLMG00005004828)	ENSCLMG00005003159	ENSCLMG00005003092	ENSCLMG00005003024	TSPEAR (ENSCLMG00005002993)
Stickleback	MODERN SPECIES	15	ISYNA1 (ENSGACG00000009858)	pdcd10a (ENSGACG00000009899)	ENSGACG00000009919	ENSGACG00000009920	ENSGACG00000009921	SLITRK3 (ENSGACG00000009924)	NRDC (ENSGACG00000009929)	ENSGACG00000009949	ENSGACG00000009955	ebi3 (ENSGACG00000009963)	crlf1a (ENSGACG00000009968)	keap1a (ENSGACG00000009976)	SSBP4 (ENSGACG00000009986)	ENSGACG00000009994	ENSGACG00000009995	d2hgdh (ENSGACG00000010002) #22	acvr1l (ENSGACG00000010017)	otomp (ENSGACG00000010021)	hs6st1b (ENSGACG00000010025)	uggt1 (ENSGACG00000010029)	ENSGACG00000010072	ola1 (ENSGACG00000010083)	TRA2B (ENSGACG00000010109)	ENSGACG00000010116	atg9a (ENSGACG00000010122)	ENSGACG00000010131	ENSGACG00000010136	TSPEAR (ENSGACG00000010149)	ENSGACG00000010156	fabp7a (ENSGACG00000010166)	fyna (ENSGACG00000010180)
Ballan wrasse	MODERN SPECIES	183	WDR25 (ENSLBEG00000005209)	ENSLBEG00000005255	DLK1 (ENSLBEG00000005287)	DIO3 (ENSLBEG00000005304)	PPP2R5C (ENSLBEG00000005316)	ENSLBEG00000005388	rpl13a (ENSLBEG00000005434)	atp5if1b (ENSLBEG00000005548)	zmpste24 (ENSLBEG00000005680)	ENSLBEG00000005710	znf593 (ENSLBEG00000005765)	selenon (ENSLBEG00000005786)	ENSLBEG00000005854	mtfr1l (ENSLBEG00000005941)	ELL (ENSLBEG00000005964)	d2hgdh (ENSLBEG00000006002) #22	acvr1l (ENSLBEG00000006061)	otomp (ENSLBEG00000006131)
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00940000163250.C	ENSGT00500000045074	ENSGT00390000018395	ENSGT00390000017913.`b.b	ENSGT00530000064359.c.b.p	ENSGT00940000158681.b	ENSGT00940000155026.c	ENSGT00940000159228.a.b	ENSGT00940000154611.ad.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00940000155914.c.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c	ENSGT00390000004600.b.a	ENSGT00940000155099.k.b	ENSGT00390000000673.a.b	ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00510000047718.c	ENSGT00940000157267
Fugu	MODERN SPECIES	11	pdcd10a (ENSTRUG00000015882)	ENSTRUG00000000562	ENSTRUG00000015881	ENSTRUG00000031712	SLITRK3 (ENSTRUG00000032942)	NRDC (ENSTRUG00000015775)	FAM163A (ENSTRUG00000020348)	ENSTRUG00000021690	ebi3 (ENSTRUG00000015744)	odf3l2a (ENSTRUG00000015738)	crlf1a (ENSTRUG00000015730)	keap1a (ENSTRUG00000015644)	SSBP4 (ENSTRUG00000015567)	ENSTRUG00000015535	ENSTRUG00000026706	d2hgdh (ENSTRUG00000015514) #22	acvr1l (ENSTRUG00000015474)	otomp (ENSTRUG00000015460)	hs6st1b (ENSTRUG00000015423)	uggt1 (ENSTRUG00000015281)	ENSTRUG00000015246	ola1 (ENSTRUG00000015215)	TRA2B (ENSTRUG00000015168)	ENSTRUG00000024268	pcnt (ENSTRUG00000029342)	atg9a (ENSTRUG00000015086)	ENSTRUG00000025356	ENSTRUG00000030769	TSPEAR (ENSTRUG00000014874)	ENSTRUG00000014832	fabp7a (ENSTRUG00000024156)
Tetraodon	MODERN SPECIES	1	PLPP2 (ENSTNIG00000017191)	gna11b (ENSTNIG00000017192)	tpgs1 (ENSTNIG00000017193)	ISYNA1 (ENSTNIG00000017194)	pdcd10a (ENSTNIG00000017195)	si:dkey-56i24.1 (ENSTNIG00000017196)	SLITRK3 (ENSTNIG00000017197)	NRDC (ENSTNIG00000017198)	ENSTNIG00000017199	ebi3 (ENSTNIG00000001785)	odf3l2a (ENSTNIG00000017200)	crlf1a (ENSTNIG00000001783)	keap1a (ENSTNIG00000017201)	SSBP4 (ENSTNIG00000017202)	ENSTNIG00000017203	d2hgdh (ENSTNIG00000017204) #22	acvr1l (ENSTNIG00000002260)	otomp (ENSTNIG00000017205)	hs6st1b (ENSTNIG00000017206)	uggt1 (ENSTNIG00000017207)	ENSTNIG00000017208	ola1 (ENSTNIG00000017209)	TRA2B (ENSTNIG00000017210)	ENSTNIG00000017211	atg9a (ENSTNIG00000001749)	ENSTNIG00000017212	ENSTNIG00000017213	ENSTNIG00000017214	TSPEAR (ENSTNIG00000017215)	ENSTNIG00000017216	fabp7a (ENSTNIG00000017217)
Pinecone sodierfish	MODERN SPECIES	14	ENSMMDG00005020160	ISYNA1 (ENSMMDG00005020171)	PDCD10 (ENSMMDG00005020200)	ENSMMDG00005020203	SLITRK3 (ENSMMDG00005020206)	NRDC (ENSMMDG00005020353)	FAM163A (ENSMMDG00005023053)	ENSMMDG00005023057	ebi3 (ENSMMDG00005023061)	odf3l2a (ENSMMDG00005023063)	crlf1a (ENSMMDG00005023064)	keap1a (ENSMMDG00005023068)	SSBP4 (ENSMMDG00005023090)	ENSMMDG00005023093	ENSMMDG00005023097	d2hgdh (ENSMMDG00005023110) #22	acvr1l (ENSMMDG00005023119)	otomp (ENSMMDG00005023121)	hs6st1b (ENSMMDG00005023123)	uggt1 (ENSMMDG00005023163)	ENSMMDG00005023493	ola1 (ENSMMDG00005007174)	TRA2B (ENSMMDG00005007194)	ENSMMDG00005007197	ENSMMDG00005007208	zgc:112416 (ENSMMDG00005007217)	atg9a (ENSMMDG00005007226)	ENSMMDG00005007261	ENSMMDG00005007292	ENSMMDG00005007298	TSPEAR (ENSMMDG00005007303)
Cod	MODERN SPECIES	18	ENSGMOG00000026137	ENSGMOG00000012069	ENSGMOG00000012071	ENSGMOG00000020578	ENSGMOG00000012076	ENSGMOG00000032279	ENSGMOG00000023572	ENSGMOG00000035278	ENSGMOG00000032048	ENSGMOG00000027795	ENSGMOG00000024957	ENSGMOG00000003947	keap1a (ENSGMOG00000004256)	ENSGMOG00000004276	ENSGMOG00000004308	d2hgdh (ENSGMOG00000004343) #22	acvr1l (ENSGMOG00000000177)	ENSGMOG00000014497	uggt1 (ENSGMOG00000000541)	ENSGMOG00000000587	ENSGMOG00000000608	ENSGMOG00000030964	ENSGMOG00000026962	ENSGMOG00000036983	ENSGMOG00000034016	ENSGMOG00000030629	ENSGMOG00000025105	ENSGMOG00000029832	ENSGMOG00000031190	ENSGMOG00000022902	ENSGMOG00000032119
Protacanthopterygii	ANCESTRAL SPECIES	104	ENSGT00530000064359.c.b	ENSGT00390000017913.`b.b	ENSGT00390000018395	ENSGT00940000163250.C	ENSGT00940000162569.b.k.b	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b	ENSGT00940000155885.a	ENSGT00940000154630.a	ENSGT00940000159004.a	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00950000183049.C.b	ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.a	ENSGT00390000004600.b.a	ENSGT00940000154308.D.c.a.a
Salmoninae	ANCESTRAL SPECIES	461		ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.b.b	ENSGT00940000155885.a	ENSGT00940000159004.a.d.a	ENSGT00530000063615.a.q.a	ENSGT00940000159004.a.d.b	ENSGT00530000063615.a.q.b	ENSGT00940000160050	ENSGT00940000160480.c.b.d	ENSGT00940000156569.a.b.a.e	ENSGT00940000160480.c.b.c	ENSGT00940000156569.a.b.a.f	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00550000075086 #22	ENSGT00940000166078.d	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b	ENSGT00940000166078.c	ENSGT00940000166763.d	ENSGT00950000183071.a.a.b.c.a.b	ENSGT00390000004600.b.a.h	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.a.a
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	193								ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.b.a	ENSGT00940000155885.a.c	ENSGT00940000159004.a.d.a	ENSGT00530000063615.a.q.a	ENSGT00940000160480.c.b.c	ENSGT00940000156569.a.b.a.e	ENSGT00950000183049.C.a.b	ENSGT00390000012355.A.b	ENSGT00550000075086.c #22	ENSGT00940000166078.d	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b
Oncorhynchus	ANCESTRAL SPECIES	49	ENSGT00940000158681.b.d.a	ENSGT00530000064359.c.b.m.b	ENSGT00390000017913.`b.b.c.b	ENSGT00390000018395.c.a	ENSGT00940000162569.b.k.b.h	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.b.b	ENSGT00940000155885.a.c.a	ENSGT00940000159004.a.d.a.b	ENSGT00940000154630.a	ENSGT00940000159004.a.c	ENSGT00530000063615.a.q.b.a	ENSGT00940000160480.c.b.c	ENSGT00940000156569.a.b.a.e	ENSGT00950000183049.C.a.b.g	ENSGT00390000012355.A.b	ENSGT00550000075086.c #22	ENSGT00940000166078.d	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.c	ENSGT00940000166763.d.b	ENSGT00950000183071.a.a.b.c.a.b.b	ENSGT00390000004600.b.a.g	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.b	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.a.b	ENSGT00390000000673.a.b.d	ENSGT00940000155099.k.b.e.b.b	ENSGT00950000183009.db.a.b.b	ENSGT00940000155489.a.c.b	ENSGT00730000110871.a.a.a.b	ENSGT00940000157267.b	ENSGT00950000182895.a.b.v.j.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000163581.f.b.k.b	ENSGT00390000018319.a.b.b.b.a.b.d	ENSGT00940000154611.ad.a.d	ENSGT00940000159228.a.b.a.b	ENSGT00940000155026.c.g	ENSGT00940000158681.b.d.a	ENSGT00530000064359.c.b.m.b	ENSGT00390000017913.`b.b.c.b	ENSGT00390000018395.c.b.a	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.b.b	ENSGT00940000155885.a.c.a	ENSGT00940000159004.a.d.a.b	ENSGT00530000063615.a.q.b.a	ENSGT00940000160480.c.b.c	ENSGT00940000156569.a.b.a.e	ENSGT00550000075086.c #22	ENSGT00940000166078.d	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.c	ENSGT00940000166763.d.b	ENSGT00950000183071.a.a.b.c.a.b.b	ENSGT00390000004600.b.a.g	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a	ENSGT00390000000673.a.b.d	ENSGT00940000155099.k.b.e.b.b	ENSGT00950000183009.db.a.b.b	ENSGT00940000155489.a.c.b	ENSGT00730000110871.a.a.a.b	ENSGT00940000157267.b	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00390000004977.d.b	ENSGT00940000176997
Coho salmon	MODERN SPECIES	25	NRDC (ENSOKIG00005027880)	SLITRK3 (ENSOKIG00005030061)	ENSOKIG00005030072	PDCD10 (ENSOKIG00005030091)	ISYNA1 (ENSOKIG00005030253)	ENSOKIG00005030351	gna11b (ENSOKIG00005030387)	ENSOKIG00005030475	PLPP2 (ENSOKIG00005030536)	shda (ENSOKIG00005028430)	yju2 (ENSOKIG00005028457)	ODF3L2 (ENSOKIG00005028473)	CRLF1 (ENSOKIG00005028497)	SSBP4 (ENSOKIG00005028601)	ENSOKIG00005029124	d2hgdh (ENSOKIG00005029136) #22	acvr1l (ENSOKIG00005029179)	ENSOKIG00005029264	otomp (ENSOKIG00005029296)	HS6ST1 (ENSOKIG00005029331)	uggt1 (ENSOKIG00005029368)	ENSOKIG00005029574	ENSOKIG00005029596	ENSOKIG00005029607	ENSOKIG00005029627	ENSOKIG00005029647	ENSOKIG00005029825	TRA2B (ENSOKIG00005029943)	ENSOKIG00005030068	ENSOKIG00005030481	ENSOKIG00005031012
Chinook salmon	MODERN SPECIES	802																d2hgdh (ENSOTSG00005040567) #22	acvr1l (ENSOTSG00005040574)	ENSOTSG00005040575	otomp (ENSOTSG00005040578)
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000004349	ENSOMYG00000070157	ENSOMYG00000004766	ENSOMYG00000005025	ENSOMYG00000005012	ENSOMYG00000005085	ENSOMYG00000005398	gna11b (ENSOMYG00000005549)	ENSOMYG00000005646	ENSOMYG00000005754	shda (ENSOMYG00000005812)	yju2 (ENSOMYG00000005836)	ENSOMYG00000005860	ENSOMYG00000076501	ENSOMYG00000006146	d2hgdh (ENSOMYG00000006336) #22	acvr1l (ENSOMYG00000006432)	ENSOMYG00000006485	otomp (ENSOMYG00000006550)	ENSOMYG00000073951	ENSOMYG00000054008	uggt1 (ENSOMYG00000006857)	ENSOMYG00000007103	ENSOMYG00000056207	OLA1 (ENSOMYG00000007476)	ENSOMYG00000007652	ENSOMYG00000007737	ENSOMYG00000007792	ENSOMYG00000029816	ENSOMYG00000030120	ENSOMYG00000030155
Salmo	ANCESTRAL SPECIES	41	ENSGT00390000018319.a.b.b.b.a.b.d	ENSGT00940000154611.ad.a.d	ENSGT00940000159228.a.b.a.a.a	ENSGT00940000158211.g.b.a	ENSGT00940000158681.b.c	ENSGT00390000018395.c.b.a	ENSGT00940000163250.C.q.b	ENSGT00940000162569.b.k.b.h	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.b.a	ENSGT00940000155885.a.c	ENSGT00940000159004.a.d.a	ENSGT00530000063615.a.q.a	ENSGT00940000160480.c.b.c	ENSGT00940000156569.a.b.a.e	ENSGT00390000012355.A.b	ENSGT00550000075086.c #22	ENSGT00940000166078.d	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.b	ENSGT00940000166763.d	ENSGT00950000183071.a.a.b.c.a.b	ENSGT00390000004600.b.a.g	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a	ENSGT00940000156207.b.c.a.a.b.a	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.a.b	ENSGT00390000000673.a.b.d	ENSGT00940000155099.k.b.e.b.b	ENSGT00950000183009.db.a.a.b	ENSGT00940000155489.a.c.b	ENSGT00940000157267.b	ENSGT01060000250127	ENSGT00540000073890.q.a
River trout	MODERN SPECIES	32	ENSSTUG00000038916	ENSSTUG00000038933	ENSSTUG00000038944	SLITRK3 (ENSSTUG00000039077)	ISYNA1 (ENSSTUG00000039107)	ENSSTUG00000039195	gna11b (ENSSTUG00000039210)	ENSSTUG00000039316	PLPP2 (ENSSTUG00000039322)	shda (ENSSTUG00000039327)	yju2 (ENSSTUG00000039333)	odf3l2a (ENSSTUG00000039344)	crlf1a (ENSSTUG00000039354)	SSBP4 (ENSSTUG00000039426)	ENSSTUG00000042209	d2hgdh (ENSSTUG00000042238) #22	acvr1l (ENSSTUG00000042270)	ENSSTUG00000042317	otomp (ENSSTUG00000042353)	HS6ST1 (ENSSTUG00000042476)	uggt1 (ENSSTUG00000042640)	ENSSTUG00000043329	ENSSTUG00000043340	ENSSTUG00000043355	ENSSTUG00000043365	ENSSTUG00000043388	ENSSTUG00000043590	TRA2B (ENSSTUG00000043611)	ENSSTUG00000043721	ENSSTUG00000043758	ENSSTUG00000044153
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000106935	ENSSSAG00000099581	prdm9 (ENSSSAG00000054294)	ENSSSAG00000075423	ENSSSAG00000080027	ENSSSAG00000075253	ENSSSAG00000075245	gna11b (ENSSSAG00000084504)	ENSSSAG00000075134	ENSSSAG00000096795	shda (ENSSSAG00000075110)	ENSSSAG00000116937	ENSSSAG00000075094	ENSSSAG00000104045	ENSSSAG00000073044	d2hgdh (ENSSSAG00000073042) #22	ENSSSAG00000096061	acvr1l (ENSSSAG00000073041)	ENSSSAG00000073038	otomp (ENSSSAG00000073035)	ENSSSAG00000073029	uggt1 (ENSSSAG00000072953)	ENSSSAG00000072938	ENSSSAG00000072947	ENSSSAG00000119394	ENSSSAG00000121488	ENSSSAG00000101873	ENSSSAG00000072836	ENSSSAG00000072819	ENSSSAG00000072814	ENSSSAG00000072729
Salmoninae_a	ANCESTRAL SPECIES	49	ENSGT00390000018395.c.b.b	ENSGT00940000163250.C.q.a	ENSGT00940000162569.b.k.b.g	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.a.b	ENSGT00390000018395.c.b.a	ENSGT00940000163250.C.q.b	ENSGT00940000162569.b.k.b.h	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.b.b	ENSGT00940000155885.a.d	ENSGT00940000159004.a.d.b	ENSGT00530000063615.a.q.b.b	ENSGT00940000160050	ENSGT00940000160480.c.b.d	ENSGT00940000156569.a.b.a.f	ENSGT00940000165458	ENSGT00550000075086.d #22	ENSGT00940000166078.c	ENSGT00940000166763.d	ENSGT00950000183071.a.a.b.c.a.b	ENSGT00390000004600.b.a.h	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000163513.d	ENSGT00390000000673.a.b.c	ENSGT00940000155099.k.b.e.b.a	ENSGT00950000183009.db.a.a.a	ENSGT00940000155489.a.d	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.b
Salmo	ANCESTRAL SPECIES	48	ENSGT00940000158681.b.d	ENSGT00530000064359.c.b.m.a.a	ENSGT00390000017913.`b.b.d	ENSGT00940000163250.C.q.a	ENSGT00390000018395.c.b.b	ENSGT00940000162569.b.k.b.g	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.b.b	ENSGT00940000155885.a.d	ENSGT00940000159004.a.d.b	ENSGT00530000063615.a.q.b.b	ENSGT00940000160050	ENSGT00940000160480.c.b.d	ENSGT00940000156569.a.b.a.f	ENSGT00940000165458	ENSGT00950000183049.C.a.b	ENSGT00550000075086.d #22	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.a	ENSGT00940000166763.c	ENSGT00950000183071.a.a.b.c.a.a	ENSGT00390000004600.b.a.h	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000163513.d	ENSGT00390000000673.a.b.c	ENSGT00940000155099.k.b.e.b.a	ENSGT00950000183009.db.a.a.a	ENSGT00940000155489.a.d	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.b
River trout	MODERN SPECIES	36	PDCD10 (ENSSTUG00000050805)	ENSSTUG00000050804	ISYNA1 (ENSSTUG00000050801)	ISYNA1 (ENSSTUG00000050796)	ENSSTUG00000050794	gna11b (ENSSTUG00000050793)	ENSSTUG00000050787	PLPP2 (ENSSTUG00000050778)	shda (ENSSTUG00000050767)	yju2 (ENSSTUG00000050759)	ebi3 (ENSSTUG00000050755)	odf3l2a (ENSSTUG00000050752)	crlf1a (ENSSTUG00000050745)	keap1a (ENSSTUG00000050739)	SSBP4 (ENSSTUG00000050664)	d2hgdh (ENSSTUG00000050650) #22	acvr1l (ENSSTUG00000050643)	ENSSTUG00000050641	otomp (ENSSTUG00000050639)	HS6ST1 (ENSSTUG00000050637)	uggt1 (ENSSTUG00000050440)	ENSSTUG00000050395	ENSSTUG00000050394	ENSSTUG00000050390	ENSSTUG00000050379	ENSSTUG00000050370	TRA2B (ENSSTUG00000050364)	ENSSTUG00000050361	zgc:112416 (ENSSTUG00000050353)	ENSSTUG00000050347	TSPEAR (ENSSTUG00000050325)
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000098402	PDC10 (ENSSSAG00000080019)	ENSSSAG00000080018	ENSSSAG00000115306	ENSSSAG00000080014	ENSSSAG00000080012	gna11b (ENSSSAG00000108714)	ENSSSAG00000079986	ENSSSAG00000093634	shda (ENSSSAG00000114133)	yju2 (ENSSSAG00000075105)	ebi3 (ENSSSAG00000079970)	crlf1a (ENSSSAG00000079959)	keap1a (ENSSSAG00000079871)	ENSSSAG00000079443	d2hgdh (ENSSSAG00000079411) #22	ENSSSAG00000079387	ENSSSAG00000094489	otomp (ENSSSAG00000103893)	acvr1l (ENSSSAG00000079396)	ENSSSAG00000079371	ENSSSAG00000078840	ENSSSAG00000116422	ENSSSAG00000092203	ENSSSAG00000078811	ENSSSAG00000078778	ENSSSAG00000078759	ENSSSAG00000078718	ENSSSAG00000083359	ENSSSAG00000072765	ENSSSAG00000078698
Oncorhynchus	ANCESTRAL SPECIES	70	ENSGT00530000064359.c.b.m.a.a	ENSGT00530000064359.c.b.m.a.b	ENSGT00390000017913.`b.b.c.a	ENSGT00390000018395.c.b.b	ENSGT00940000163250.C.q.a	ENSGT00940000162569.b.k.b.g	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.a.b	ENSGT00940000155885.a.c.b	ENSGT00940000159004.a.d.a.a	ENSGT00530000063615.a.q.b.b	ENSGT00940000160050	ENSGT00940000160480.c.b.d	ENSGT00940000156569.a.b.a.f	ENSGT00940000165458	ENSGT00950000183049.C.a.b.h	ENSGT00550000075086.d #22	ENSGT00940000166078.c	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.d	ENSGT00940000166763.d.a	ENSGT00950000183071.a.a.b.c.a.b.a	ENSGT00390000004600.b.a.h	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000163513.d	ENSGT00390000000673.a.b.c	ENSGT00940000155099.k.b.e.a	ENSGT00950000183009.db.a.b.a	ENSGT00940000155489.a.d	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.a
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000029073	ENSOMYG00000068347	ENSOMYG00000029039	ENSOMYG00000029105	ENSOMYG00000029120	gna11b (ENSOMYG00000029266)	ENSOMYG00000060163	ENSOMYG00000029333	shda (ENSOMYG00000029342)	yju2 (ENSOMYG00000029355)	ebi3 (ENSOMYG00000060222)	odf3l2a (ENSOMYG00000029374)	crlf1a (ENSOMYG00000029383)	keap1a (ENSOMYG00000029406)	ENSOMYG00000029537	d2hgdh (ENSOMYG00000029891) #22	acvr1l (ENSOMYG00000029939)	otomp (ENSOMYG00000030021)	ENSOMYG00000030085	ENSOMYG00000053703	uggt1 (ENSOMYG00000030624)	ENSOMYG00000031247	ENSOMYG00000031259	ENSOMYG00000031275	ENSOMYG00000031318	ENSOMYG00000031443	ENSOMYG00000031530	ENSOMYG00000031683	ENSOMYG00000031785	ENSOMYG00000031847	ENSOMYG00000031943
Oncorhynchus_a	ANCESTRAL SPECIES	86	ENSGT00390000017913.`b.b.c.a	ENSGT00390000018395.c.b.b	ENSGT00940000163250.C.q.a	ENSGT00940000162569.b.k.b.g	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.a.b	ENSGT00940000162569.b.k.b.h	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.h.b.a.a	ENSGT00940000155885.a.c.b	ENSGT00940000159004.a.d.a.a	ENSGT00940000159004.a.d.b	ENSGT00530000063615.a.q.b.b	ENSGT00940000160050	ENSGT00940000160480.c.b.d	ENSGT00940000156569.a.b.a.f	ENSGT00940000165458.g	ENSGT00550000075086.d #22	ENSGT00940000166078.c.c	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.d	ENSGT00940000166763.d.a	ENSGT00950000183071.a.a.b.c.a.b.a	ENSGT00390000004600.b.a.h	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000163513.d	ENSGT00390000000673.a.b.c	ENSGT00940000155099.k.b.e.a	ENSGT00950000183009.db.a.b.a	ENSGT00940000155489.a.c.a	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.a
Chinook salmon	MODERN SPECIES	5	PDCD10 (ENSOTSG00005022134)	ISYNA1 (ENSOTSG00005022161)	ENSOTSG00005022174	gna11b (ENSOTSG00005022175)	ENSOTSG00005022176	shda (ENSOTSG00005022177)	yju2 (ENSOTSG00005022178)	ebi3 (ENSOTSG00005022180)	odf3l2a (ENSOTSG00005022181)	crlf1a (ENSOTSG00005022182)	keap1a (ENSOTSG00005022183)	ENSOTSG00005022184	ENSOTSG00005022185	ENSOTSG00005022188	ENSOTSG00005022189	d2hgdh (ENSOTSG00005022190) #22	acvr1l (ENSOTSG00005022191)	ENSOTSG00005022193	otomp (ENSOTSG00005022194)	hs6st1b (ENSOTSG00005022195)	uggt1 (ENSOTSG00005022205)	ENSOTSG00005022580	ENSOTSG00005022583	ENSOTSG00005022588	ENSOTSG00005022591	ENSOTSG00005022594	ENSOTSG00005022645	TRA2B (ENSOTSG00005022648)	ENSOTSG00005022649	ENSOTSG00005022650	ENSOTSG00005022651
Huchen	MODERN SPECIES	1408	PDCD10 (ENSHHUG00000044565)	ENSHHUG00000044549	gna11b (ENSHHUG00000044381)	ENSHHUG00000044376	ENSHHUG00000044375	PLPP2 (ENSHHUG00000044372)	shda (ENSHHUG00000044370)	yju2 (ENSHHUG00000044366)	ebi3 (ENSHHUG00000044363)	odf3l2a (ENSHHUG00000044359)	crlf1a (ENSHHUG00000044351)	ENSHHUG00000044342	keap1a (ENSHHUG00000044328)	SSBP4 (ENSHHUG00000044204)	ENSHHUG00000044193	d2hgdh (ENSHHUG00000044183) #22	acvr1l (ENSHHUG00000044175)	ENSHHUG00000044168	otomp (ENSHHUG00000044158)
Northern pike	MODERN SPECIES	21	B3GALT1 (ENSELUG00000022353)	ENSELUG00000022411	ABCB11 (ENSELUG00000022485)	ENSELUG00000022511	DHRS9 (ENSELUG00000030984)	atp5f1b (ENSELUG00000022530)	ENSELUG00000022778	klhl41b (ENSELUG00000022822)	OXGR1 (ENSELUG00000022835)	ENSELUG00000022860	dzip1 (ENSELUG00000022900)	CLDN10 (ENSELUG00000022937)	ENSELUG00000022951	cldn10a (ENSELUG00000023005)	abcc4 (ENSELUG00000023218)	d2hgdh (ENSELUG00000023246) #22	acvr1l (ENSELUG00000023355)	otomp (ENSELUG00000023421)	HS6ST1 (ENSELUG00000023469)	uggt1 (ENSELUG00000023594)	ENSELUG00000025993	ENSELUG00000023709	PCDH20 (ENSELUG00000023719)	tdrd3 (ENSELUG00000000994)	diaph3 (ENSELUG00000023826)	ENSELUG00000030528	pcdh17 (ENSELUG00000023856)	ENSELUG00000023869	ENSELUG00000023940	FBXL3 (ENSELUG00000023952)	ENSELUG00000024087
Osteoglossiformes	ANCESTRAL SPECIES	426																ENSGT00550000075086 #22	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.d.b	ENSGT00390000004600.b.a	ENSGT00940000165265.d	ENSGT00990000205697	ENSGT01030000235105	ENSGT00940000156948.i.a
P. kingsleyae	MODERN SPECIES	168	VWA5B2 (ENSPKIG00000014524)	alg3 (ENSPKIG00000014561)	mul1a (ENSPKIG00000014601)	camk2n1a (ENSPKIG00000014615)	ENSPKIG00000014637	MAP6D1 (ENSPKIG00000014661)	YEATS2 (ENSPKIG00000014684)	KLHL24 (ENSPKIG00000014745)	ENSPKIG00000014770	ENSPKIG00000014777	mterf4 (ENSPKIG00000014785) #8	ENSPKIG00000014802 #9	KLHL6 (ENSPKIG00000014846)	PAK2 (ENSPKIG00000014902)	ing5b (ENSPKIG00000015034) #21	d2hgdh (ENSPKIG00000015069) #22	acvr1l (ENSPKIG00000015113)	otomp (ENSPKIG00000015159)	HS6ST1 (ENSPKIG00000015216)	uggt1 (ENSPKIG00000015319)	ek1 (ENSPKIG00000015583)	ENSPKIG00000015614	ENSPKIG00000015635	ENSPKIG00000015662	EPHA4 (ENSPKIG00000015684)	ENSPKIG00000015745	spsb4a (ENSPKIG00000015796)	CFAP57 (ENSPKIG00000015827)	ENSPKIG00000015853	ANGPTL3 (ENSPKIG00000015888)	ENSPKIG00000015961
Asian bonytongue	MODERN SPECIES	18	FHDC1 (ENSSFOG00015008598)	FBXW7 (ENSSFOG00015008564)	FHIP1A (ENSSFOG00015027161)	ENSSFOG00015033078	RPS3A (ENSSFOG00015033020)	ENSSFOG00015008573	ENSSFOG00015032740	FHIP1A (ENSSFOG00015008540)	ENSSFOG00015008509	RPS3A (ENSSFOG00015008477)	mab21l2 (ENSSFOG00015026793)	ENSSFOG00015008282	ENSSFOG00015008200	klhl6 (ENSSFOG00015024715)	PAK2 (ENSSFOG00015031867)	d2hgdh (ENSSFOG00015007236) #22	otomp (ENSSFOG00015007320)	acvr1l (ENSSFOG00015007275)	HS6ST1 (ENSSFOG00015007332)	uggt1 (ENSSFOG00015007345)	ENSSFOG00015007540	ENSSFOG00015007553	rbp1.2 (ENSSFOG00015007639)	farsb (ENSSFOG00015007850)	mrps22 (ENSSFOG00015007902)	rbp2b (ENSSFOG00015026328)	ENSSFOG00015007929	pnn (ENSSFOG00015007936)	zc3h14 (ENSSFOG00015007976)	ENSSFOG00015025912	tmed10 (ENSSFOG00015008009)
Spotted gar	MODERN SPECIES	652	KY (ENSLOCG00000006234)	hdlbpa (ENSLOCG00000006278) #12	septin2 (ENSLOCG00000006303) #13	ENSLOCG00000006320	FARP2 (ENSLOCG00000006339) #14	stk25a (ENSLOCG00000006383) #15	boka (ENSLOCG00000006419) #16	thap4 (ENSLOCG00000006455) #17	atg4b (ENSLOCG00000006470) #19	dtymk (ENSLOCG00000006505) #20	agxta (ENSLOCG00000006520)	zgc:103559 (ENSLOCG00000006539)	KIF1A (ENSLOCG00000006554)	cep19 (ENSLOCG00000006635)	ing5a (ENSLOCG00000006651) #21	d2hgdh (ENSLOCG00000006684) #22	acvr1l (ENSLOCG00000006702)	plekhb2 (ENSLOCG00000006720)	otomp (ENSLOCG00000006736)	hs6st1b (ENSLOCG00000006754)	uggt1 (ENSLOCG00000006770)	epha4b (ENSLOCG00000006817)	ENSLOCG00000006861	ENSLOCG00000006881	ccl34b.4 (ENSLOCG00000006892)	ENSLOCG00000006901	ENSLOCG00000006917	ENSLOCG00000006933	ENSLOCG00000006945	tfr1b (ENSLOCG00000006962)	ENSLOCG00000006982
Reedfish	MODERN SPECIES	467	ENSECRG00000018966	parla (ENSECRG00000019037)	sox14 (ENSECRG00000019956)	ENSECRG00000019967	ENSECRG00000019993	ENSECRG00000020005	ENSECRG00000020054	ENSECRG00000018249	ENSECRG00000018286	septin2 (ENSECRG00000018345) #13	rpp21 (ENSECRG00000018647)	pak2b (ENSECRG00000018676)	pigx (ENSECRG00000018746)	cep19 (ENSECRG00000018778)	ing5a (ENSECRG00000018797) #21	d2hgdh (ENSECRG00000018816) #22	fbxo45 (ENSECRG00000018838)	ENSECRG00000018861
Elephant shark	MODERN SPECIES	1486	ENSCMIG00000013640	PAK2 (ENSCMIG00000013716)	AQP12A (ENSCMIG00000013867)	ENSCMIG00000013878 #23	SMCO1 (ENSCMIG00000013882)	ENSCMIG00000013886	ubxn7 (ENSCMIG00000013916)	ENSCMIG00000013960	ENSCMIG00000013966	stk25a (ENSCMIG00000013970) #15	boka (ENSCMIG00000013980) #16	THAP4 (ENSCMIG00000013983) #17	atg4b (ENSCMIG00000013996) #19	dtymk (ENSCMIG00000014020) #20	ing5a (ENSCMIG00000014024) #21	d2hgdh (ENSCMIG00000014042) #22	fbxo45 (ENSCMIG00000014055)	ENSCMIG00000014058	NRROS (ENSCMIG00000014061)	CEP19 (ENSCMIG00000014062)	ENSCMIG00000014070	ENSCMIG00000014078	sox14 (ENSCMIG00000014085)	cldn18 (ENSCMIG00000014091)	DUSP28 (ENSCMIG00000014104)	ENSCMIG00000014107	fam168b (ENSCMIG00000014110)	plekhb2 (ENSCMIG00000014113)	hs6st1b (ENSCMIG00000014115)	uggt1 (ENSCMIG00000014169)	ENSCMIG00000014397
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00550000075086 #22
Lamprey	MODERN SPECIES	91	ENSPMAG00000010081	ENSPMAG00000010236	ENSPMAG00000003324	ENSPMAG00000010238	ENSPMAG00000010240	ENSPMAG00000010242	CRYGS (ENSPMAG00000003367)	ENSPMAG00000003375	ENSPMAG00000003378	ENSPMAG00000003393	isca2 (ENSPMAG00000003402)	glrx5 (ENSPMAG00000003413)	ENSPMAG00000003416	ENSPMAG00000003426	ENSPMAG00000010243	d2hgdh (ENSPMAG00000003430) #22	ENSPMAG00000003435	ENSPMAG00000003445	ENSPMAG00000003452	ENSPMAG00000003454	ENSPMAG00000003456	ENSPMAG00000003458	ypel5 (ENSPMAG00000003464)	eif5 (ENSPMAG00000003472)	ENSPMAG00000003475	me3 (ENSPMAG00000003478)	ehd1b (ENSPMAG00000003490)	ENSPMAG00000003503
Hagfish	MODERN SPECIES	531									ENSEBUG00000010484	ENSEBUG00000006297	prps1b (ENSEBUG00000001393)	ENSEBUG00000013582	ENSEBUG00000003231	ENSEBUG00000015742	kansl3 (ENSEBUG00000006519)	ENSEBUG00000003166 #22	ENSEBUG00000003444
Ciona	ANCESTRAL SPECIES	323													ENSGT00940000168082	ENSGT00390000002581	ENSGT00940000163963.l.a.a.a	ENSGT00550000075086 #22
Ciona intestinalis	MODERN SPECIES		ENSCING00000012485	ENSCING00000001153	ENSCING00000006242	ENSCING00000022109	ENSCING00000006244	ENSCING00000006254	ENSCING00000006263	ENSCING00000006406	ENSCING00000024332	ENSCING00000000576	ENSCING00000012483	ENSCING00000023016	ENSCING00000001015	ENSCING00000012481	ENSCING00000001017	ENSCING00000012479 #22	ENSCING00000021139	ENSCING00000001042	ENSCING00000001043	ENSCING00000018853	ENSCING00000001045	ENSCING00000025122	ENSCING00000021623	ENSCING00000001049	ENSCING00000024417	ENSCING00000020639	ENSCING00000024673	ENSCING00000001054	ENSCING00000023119	ENSCING00000022063	ENSCING00000000739
Ciona savignyi	MODERN SPECIES	55	ENSCSAVG00000011158	ENSCSAVG00000011167	ENSCSAVG00000011168	ENSCSAVG00000011170	ENSCSAVG00000011173	ENSCSAVG00000011175	ENSCSAVG00000011176	ENSCSAVG00000011177	ENSCSAVG00000011180	ENSCSAVG00000011232	ENSCSAVG00000011235	ENSCSAVG00000011236	ENSCSAVG00000011239	ENSCSAVG00000011240	ENSCSAVG00000011241	ENSCSAVG00000011242 #22
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00550000075086 #22
Fruitfly	MODERN SPECIES	26	CG4325 (FBgn0026878)	moody (FBgn0025631)	Sik2 (FBgn0025625)	CG4281 (FBgn0025626)	CG14054 (FBgn0029596)	CG4199 (FBgn0025628)	CG4194 (FBgn0025627)	Rtca (FBgn0025630)	CG4045 (FBgn0025629)	CG4025 (FBgn0025624)	CG16903 (FBgn0040394)	Unc-76 (FBgn0040395)	csw (FBgn0000382)	ph-d (FBgn0004860)	ph-p (FBgn0004861)	D2hgdh (FBgn0023507) #22	Pgd (FBgn0004654)	bcn92 (FBgn0013432)	wapl (FBgn0004655)	Cyp4d1 (FBgn0005670)	CG3630 (FBgn0023540)	ND-B14.5A (FBgn0025839)	Cyp4d14 (FBgn0023541)	Cyp4d2 (FBgn0011576)	Cyp4ae1 (FBgn0015036)	pn (FBgn0003116)	Nmd3 (FBgn0023542)	CG17776 (FBgn0040899)	CG17777 (FBgn0040900)	CG3457 (FBgn0024984)	Mct1 (FBgn0023549)
Caenorhabditis elegans	MODERN SPECIES	1	ints-7 (WBGene00008361)	smc-6 (WBGene00010056)	pcs-1 (WBGene00003960)	F54D5.2 (WBGene00010048)	F54D5.3 (WBGene00010049)	F54D5.4 (WBGene00010050)	F54D5.23 (WBGene00219434)	F54D5.5 (WBGene00010051)	F54D5.15 (WBGene00010057)	F54D5.17 (WBGene00195146)	F54D5.24 (WBGene00271798)	F54D5.7 (WBGene00010052)	dnj-13 (WBGene00001031)	F54D5.9 (WBGene00010053)	gtf-2E2 (WBGene00010054)	F54D5.12 (WBGene00010055) #22	Y62F5A.9 (WBGene00013387)	Y62F5A.12 (WBGene00077453)	mdt-8 (WBGene00007013)	Y62F5A.10 (WBGene00013388)	age-1 (WBGene00000090)	B0334.10 (WBGene00007148)	srh-44 (WBGene00005267)	B0334.6 (WBGene00007146)	B0334.20 (WBGene00219293)	B0334.5 (WBGene00007145)	emc-5 (WBGene00195248)	B0334.4 (WBGene00007144)	ooc-3 (WBGene00003868)	hacl-1 (WBGene00007143)	B0334.13 (WBGene00007149)