Tetrapoda	ANCESTRAL SPECIES	430																ENSGT00940000162120 #22	ENSGT00940000166203
Amniota	ANCESTRAL SPECIES	123											ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25
Mammalia	ANCESTRAL SPECIES	75	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000171396	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00390000017608 #32	ENSGT00390000003107.b #31	ENSGT00530000064222.a #30	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37	ENSGT00940000160599
Theria	ANCESTRAL SPECIES	27	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Eutheria	ANCESTRAL SPECIES	29	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Primates	ANCESTRAL SPECIES	15	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Simiiformes	ANCESTRAL SPECIES	16	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Catarrhini	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.b #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.b #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d #15	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Rhinopithecus	ANCESTRAL SPECIES	16	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT00390000015797.c.b.d #8	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.b #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d #15	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765.p #37
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d #15	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d #15	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Macaca	ANCESTRAL SPECIES	12	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d #15	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Pig-tailed macaque	MODERN SPECIES	551	PNMA8A (ENSMNEG00000028579) ##7	PNMA8C (ENSMNEG00000013860) #7	CCDC8 (ENSMNEG00000035328) ##7	ENSMNEG00000039917 #8	PPP5C (ENSMNEG00000029801) #9	HIF3A (ENSMNEG00000038570) #10	IGFL1 (ENSMNEG00000040374) #11	IGFL3 (ENSMNEG00000044243) #14	ENSMNEG00000041271 #15	ENSMNEG00000023075 #16	PGLYRP1 (ENSMNEG00000011734) #17	CCDC61 (ENSMNEG00000035233) #18	NOVA2 (ENSMNEG00000040253) #19	NANOS2 (ENSMNEG00000004633) #20	MYPOP (ENSMNEG00000031648) #21	IRF2BP1 (ENSMNEG00000017409) #22	FOXA3 (ENSMNEG00000040470) #23	SYMPK (ENSMNEG00000019439) #24	RSPH6A (ENSMNEG00000040843) #25	DMWD (ENSMNEG00000031944) #26	DMPK (ENSMNEG00000037335) #27	SIX5 (ENSMNEG00000032313) #28	MEIOSIN (ENSMNEG00000043184) #29	FBXO46 (ENSMNEG00000027865) #30	QPCTL (ENSMNEG00000035757) #31	ENSMNEG00000039787 #32	GIPR (ENSMNEG00000035353) #33	ENSMNEG00000042527 #34	GPR4 (ENSMNEG00000002892) #35	OPA3 (ENSMNEG00000040409) #36	VASP (ENSMNEG00000031417) #37
Macaca_a	ANCESTRAL SPECIES	1	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00390000015797.c.b #8	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00990000210495	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Crab-eating macaque	MODERN SPECIES	10	CALM3 (ENSMFAG00000036156)	ENSMFAG00000035539 ##7	PNMA8A (ENSMFAG00000006014) ##7	PNMA8C (ENSMFAG00000029984) #7	CCDC8 (ENSMFAG00000041847) ##7	ENSMFAG00000036651 #8	PPP5C (ENSMFAG00000034179) #9	HIF3A (ENSMFAG00000025583) #10	ENSMFAG00000057751 #11	IGFL3 (ENSMFAG00000003659) #14	ENSMFAG00000001824 #16	PGLYRP1 (ENSMFAG00000032464) #17	CCDC61 (ENSMFAG00000035042) #18	NOVA2 (ENSMFAG00000043672) #19	NANOS2 (ENSMFAG00000017215) #20	IRF2BP1 (ENSMFAG00000061076) #22	FOXA3 (ENSMFAG00000040557) #23	SYMPK (ENSMFAG00000038558) #24	RSPH6A (ENSMFAG00000029233) #25	DMWD (ENSMFAG00000033696) #26	DMPK (ENSMFAG00000037913) #27	ENSMFAG00000054039	MEIOSIN (ENSMFAG00000038095) #29	FBXO46 (ENSMFAG00000004080) #30	QPCTL (ENSMFAG00000009032) #31	GIPR (ENSMFAG00000043015) #33	EML2 (ENSMFAG00000001217) #34	OPA3 (ENSMFAG00000045575) #36	VASP (ENSMFAG00000036820) #37	PPM1N (ENSMFAG00000040939)	RTN2 (ENSMFAG00000002551)
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d #15	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Olive baboon	MODERN SPECIES	12	PNMA8A (ENSPANG00000018286) ##7	PNMA8C (ENSPANG00000033741) #7	CCDC8 (ENSPANG00000020252) ##7	ENSPANG00000029483 #8	PPP5C (ENSPANG00000002966) #9	HIF3A (ENSPANG00000014598) #10	ENSPANG00000044504 #11	ENSPANG00000039314 #11	ENSPANG00000038110 #13	IGFL3 (ENSPANG00000019926) #14	PGLYRP1 (ENSPANG00000048485) #17	CCDC61 (ENSPANG00000009365) #18	NOVA2 (ENSPANG00000023868) #19	NANOS2 (ENSPANG00000009327) #20	MYPOP (ENSPANG00000046784) #21	IRF2BP1 (ENSPANG00000002641) #22	FOXA3 (ENSPANG00000034535) #23	SYMPK (ENSPANG00000019930) #24	RSPH6A (ENSPANG00000011597) #25	DMWD (ENSPANG00000001288) #26	DMPK (ENSPANG00000002664) #27	SIX5 (ENSPANG00000005316) #28	MEIOSIN (ENSPANG00000018287) #29	FBXO46 (ENSPANG00000002640) #30	QPCTL (ENSPANG00000016116) #31	ENSPANG00000008802 #32	GIPR (ENSPANG00000014706) #33	EML2 (ENSPANG00000007941) #34	GPR4 (ENSPANG00000013282) #35	OPA3 (ENSPANG00000031982) #36	VASP (ENSPANG00000019931) #37
Cercopithecinae_d	ANCESTRAL SPECIES	9	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d #15	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Sooty mangabey	MODERN SPECIES	228	PNMA8A (ENSCATG00000037135) ##7	PNMA8C (ENSCATG00000016093) #7	CCDC8 (ENSCATG00000030098) ##7	ENSCATG00000021418 #8	PPP5C (ENSCATG00000031479) #9	HIF3A (ENSCATG00000013440) #10	IGFL1 (ENSCATG00000040141) #11	IGFL3 (ENSCATG00000018431) #14	ENSCATG00000032983 #15	IGFL4 (ENSCATG00000019969) #16	PGLYRP1 (ENSCATG00000018338) #17	CCDC61 (ENSCATG00000033104) #18	NOVA2 (ENSCATG00000045122) #19	NANOS2 (ENSCATG00000018951) #20	MYPOP (ENSCATG00000044811) #21	IRF2BP1 (ENSCATG00000019478) #22	FOXA3 (ENSCATG00000040589) #23	SYMPK (ENSCATG00000045107) #24	RSPH6A (ENSCATG00000031236) #25	DMWD (ENSCATG00000041290) #26	DMPK (ENSCATG00000044065) #27	SIX5 (ENSCATG00000034595) #28	MEIOSIN (ENSCATG00000014100) #29	FBXO46 (ENSCATG00000019580) #30	QPCTL (ENSCATG00000035425) #31	ENSCATG00000031591 #32	GIPR (ENSCATG00000039010) #33	EML2 (ENSCATG00000044498) #34	GPR4 (ENSCATG00000015059) #35	OPA3 (ENSCATG00000032509) #36	VASP (ENSCATG00000042996) #37
Vervet Monkey	MODERN SPECIES	25	PNMA8B (ENSCSAG00000019633) ##7	PNMA8A (ENSCSAG00000003053) ##7	CCDC8 (ENSCSAG00000019632) ##7	ENSCSAG00000019631	ENSCSAG00000019630 #8	PPP5C (ENSCSAG00000003061) #9	HIF3A (ENSCSAG00000003068) #10	IGFL1 (ENSCSAG00000003071) #11	IGFL3 (ENSCSAG00000003072) #14	IGFL4 (ENSCSAG00000003076) #16	PGLYRP1 (ENSCSAG00000003083) #17	CCDC61 (ENSCSAG00000003098) #18	NOVA2 (ENSCSAG00000003105) #19	NANOS2 (ENSCSAG00000019629) #20	MYPOP (ENSCSAG00000003108) #21	IRF2BP1 (ENSCSAG00000019628) #22	FOXA3 (ENSCSAG00000003110) #23	SYMPK (ENSCSAG00000003115) #24	RSPH6A (ENSCSAG00000003122) #25	DMWD (ENSCSAG00000003130) #26	DMPK (ENSCSAG00000003146) #27	SIX5 (ENSCSAG00000003151) #28	MEIOSIN (ENSCSAG00000003154) #29	FBXO46 (ENSCSAG00000019627) #30	QPCTL (ENSCSAG00000003156) #31	SNRPD2 (ENSCSAG00000003157) #32	GIPR (ENSCSAG00000003163) #33	GPR4 (ENSCSAG00000019626) #35	OPA3 (ENSCSAG00000003168) #36	VASP (ENSCSAG00000003169) #37	PPM1N (ENSCSAG00000003172)
Hominoidea	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.b #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Hominidae	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.b #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785.j #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.b #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Gorilla	MODERN SPECIES	10	PNMA8A (ENSGGOG00000001214) ##7	PNMA8C (ENSGGOG00000040172) #7	CCDC8 (ENSGGOG00000016630) ##7	PPP5C (ENSGGOG00000007562) #9	HIF3A (ENSGGOG00000007551) #10	IGFL1 (ENSGGOG00000011461) #11	IGFL2 (ENSGGOG00000024074) #12	ENSGGOG00000028458 #13	IGFL3 (ENSGGOG00000005560) #14	IGFL4 (ENSGGOG00000027623) #16	PGLYRP1 (ENSGGOG00000011126) #17	ENSGGOG00000011115 #18	NOVA2 (ENSGGOG00000000325) #19	NANOS2 (ENSGGOG00000013447) #20	MYPOP (ENSGGOG00000017080) #21	IRF2BP1 (ENSGGOG00000023972) #22	FOXA3 (ENSGGOG00000003972) #23	SYMPK (ENSGGOG00000003410) #24	RSPH6A (ENSGGOG00000003405) #25	DMWD (ENSGGOG00000007982) #26	DMPK (ENSGGOG00000007967) #27	SIX5 (ENSGGOG00000007958) #28	BHMG1 (ENSGGOG00000036840) #29	FBXO46 (ENSGGOG00000027287) #30	QPCTL (ENSGGOG00000002353) #31	SNRPD2 (ENSGGOG00000002350) #32	GIPR (ENSGGOG00000016144) #33	ENSGGOG00000015482 #34	GPR4 (ENSGGOG00000043968) #35	ENSGGOG00000009890 #36	VASP (ENSGGOG00000009879) #37
Homo/Pan group	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785.j #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.b #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Pan	ANCESTRAL SPECIES	9	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785.j #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.A.b #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Chimpanzee	MODERN SPECIES	10	PNMA8A (ENSPTRG00000011183) ##7	PNMA8C (ENSPTRG00000048654) #7	CCDC8 (ENSPTRG00000011182) ##7	PPP5C (ENSPTRG00000011181) #9	HIF3A (ENSPTRG00000011180) #10	IGFL1 (ENSPTRG00000011179) #11	IGFL2 (ENSPTRG00000041643) #12	ENSPTRG00000050670 #13	IGFL3 (ENSPTRG00000011176) #14	IGFL4 (ENSPTRG00000051124) #16	PGLYRP1 (ENSPTRG00000011175) #17	CCDC61 (ENSPTRG00000039834) #18	NOVA2 (ENSPTRG00000011173) #19	NANOS2 (ENSPTRG00000011172) #20	MYPOP (ENSPTRG00000028972) #21	IRF2BP1 (ENSPTRG00000011171) #22	FOXA3 (ENSPTRG00000011170) #23	SYMPK (ENSPTRG00000011169) #24	RSPH6A (ENSPTRG00000011168) #25	DMWD (ENSPTRG00000011165) #26	DMPK (ENSPTRG00000011166) #27	SIX5 (ENSPTRG00000033681) #28	MEIOSIN (ENSPTRG00000041781) #29	FBXO46 (ENSPTRG00000038848) #30	QPCTL (ENSPTRG00000011163) #31	SNRPD2 (ENSPTRG00000011162) #32	GIPR (ENSPTRG00000050104) #33	ENSPTRG00000048889 #34	GPR4 (ENSPTRG00000051128) #35	OPA3 (ENSPTRG00000045719) #36	VASP (ENSPTRG00000046601) #37
Human	MODERN SPECIES	10	PNMA8B (ENSG00000204851) ##7	PNMA8A (ENSG00000182013) ##7	PNMA8C (ENSG00000277531) #7	CCDC8 (ENSG00000169515) ##7	PPP5C (ENSG00000011485) #9	HIF3A (ENSG00000124440) #10	IGFL1 (ENSG00000188293) #11	IGFL2 (ENSG00000204866) #12	IGFL3 (ENSG00000188624) #14	IGFL4 (ENSG00000204869) #16	PGLYRP1 (ENSG00000008438) #17	CCDC61 (ENSG00000104983) #18	NOVA2 (ENSG00000104967) #19	NANOS2 (ENSG00000188425) #20	MYPOP (ENSG00000176182) #21	IRF2BP1 (ENSG00000170604) #22	FOXA3 (ENSG00000170608) #23	SYMPK (ENSG00000125755) #24	RSPH6A (ENSG00000104941) #25	DMWD (ENSG00000185800) #26	ENSG00000268434	DMPK (ENSG00000104936) #27	SIX5 (ENSG00000177045) #28	MEIOSIN (ENSG00000237452) #29	FBXO46 (ENSG00000177051) #30	QPCTL (ENSG00000011478) #31	SNRPD2 (ENSG00000125743) #32	GIPR (ENSG00000010310) #33	EML2 (ENSG00000125746) #34	GPR4 (ENSG00000177464) #35	OPA3 (ENSG00000125741) #36
Orangutan	MODERN SPECIES	10	PNMA8A (ENSPPYG00000035419) ##7	PNMA8C (ENSPPYG00000037781) #7	CCDC8 (ENSPPYG00000010150) ##7	PPP5C (ENSPPYG00000010148) #9	HIF3A (ENSPPYG00000010147) #10	IGFL1 (ENSPPYG00000040323) #11	ENSPPYG00000040668 #13	IGFL3 (ENSPPYG00000010144) #14	ENSPPYG00000029912 #12	IGFL4 (ENSPPYG00000010142) #16	PGLYRP1 (ENSPPYG00000010141) #17	CCDC61 (ENSPPYG00000010140) #18	NOVA2 (ENSPPYG00000010139) #19	NANOS2 (ENSPPYG00000010138) #20	ENSPPYG00000031914 #21	IRF2BP1 (ENSPPYG00000010136) #22	FOXA3 (ENSPPYG00000010580) #23	SYMPK (ENSPPYG00000010135) #24	RSPH6A (ENSPPYG00000010134) #25	DMWD (ENSPPYG00000010133) #26	DMPK (ENSPPYG00000010132) #27	SIX5 (ENSPPYG00000010131) #28	MEIOSIN (ENSPPYG00000036674) #29	FBXO46 (ENSPPYG00000041185) #30	QPCTL (ENSPPYG00000010130) #31	ENSPPYG00000010129 #32	GIPR (ENSPPYG00000010128) #33	ENSPPYG00000010127 #34	GPR4 (ENSPPYG00000010126) #35	ENSPPYG00000032022 #36	VASP (ENSPPYG00000010124) #37
Gibbon	MODERN SPECIES	7	PNMA8A (ENSNLEG00000002749) ##7	PNMA8C (ENSNLEG00000030454) #7	ENSNLEG00000030898 ##7	ENSNLEG00000002747 ##7	PPP5C (ENSNLEG00000002629) #9	HIF3A (ENSNLEG00000002481) #10	IGFL1 (ENSNLEG00000002458) #11	ENSNLEG00000002443 #12	ENSNLEG00000032323 #13	IGFL3 (ENSNLEG00000002440) #14	IGFL4 (ENSNLEG00000002438) #16	PGLYRP1 (ENSNLEG00000002422) #17	CCDC61 (ENSNLEG00000002402) #18	ENSNLEG00000002399 #19	MYPOP (ENSNLEG00000002401) #21	IRF2BP1 (ENSNLEG00000018408) #22	FOXA3 (ENSNLEG00000002392) #23	SYMPK (ENSNLEG00000002369) #24	RSPH6A (ENSNLEG00000002328) #25	DMWD (ENSNLEG00000002321) #26	DMPK (ENSNLEG00000002298) #27	ENSNLEG00000002295 #28	MEIOSIN (ENSNLEG00000002294) #29	ENSNLEG00000031904	ENSNLEG00000002287 #31	SNRPD2 (ENSNLEG00000002274) #32	ENSNLEG00000002246 #34	GPR4 (ENSNLEG00000030194) #35	ENSNLEG00000002240 #36	VASP (ENSNLEG00000002237) #37	PPM1N (ENSNLEG00000002225)
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C.c #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cebidae	ANCESTRAL SPECIES	8	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C.c #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb.d #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765.k #37
Marmoset	MODERN SPECIES	14	PTGIR (ENSCJAG00000011850)	CALM3 (ENSCJAG00000078405)	PNMA8B (ENSCJAG00000011875) ##7	PNMA8C (ENSCJAG00000075292) #7	CCDC8 (ENSCJAG00000074769) ##7	PPP5C (ENSCJAG00000011891) #9	HIF3A (ENSCJAG00000012019) #10	ENSCJAG00000022850	IGFL1 (ENSCJAG00000012086) #11	PGLYRP1 (ENSCJAG00000012095) #17	CCDC61 (ENSCJAG00000012104) #18	NOVA2 (ENSCJAG00000012121) #19	ENSCJAG00000074719	NANOS2 (ENSCJAG00000012141) #20	MYPOP (ENSCJAG00000063769) #21	IRF2BP1 (ENSCJAG00000038370) #22	FOXA3 (ENSCJAG00000073792) #23	SYMPK (ENSCJAG00000012172) #24	RSPH6A (ENSCJAG00000053794) #25	DMWD (ENSCJAG00000012286) #26	DMPK (ENSCJAG00000012303) #27	SIX5 (ENSCJAG00000012372) #28	FBXO46 (ENSCJAG00000012379) #30	QPCTL (ENSCJAG00000082509) #31	ENSCJAG00000019291 #32	GIPR (ENSCJAG00000012422) #33	EML2 (ENSCJAG00000012469) #34	GPR4 (ENSCJAG00000047762) #35	OPA3 (ENSCJAG00000045305) #36	ENSCJAG00000012536 #37	PPM1N (ENSCJAG00000012560)
Cebidae_a	ANCESTRAL SPECIES	20	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C.c #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb.c.b #32	ENSGT00390000017608.b.nb.d #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Capuchin	MODERN SPECIES	296							PNMA8A (ENSCCAG00000023382) ##7	CCDC8 (ENSCCAG00000033018) ##7	PPP5C (ENSCCAG00000021171) #9	HIF3A (ENSCCAG00000028768) #10	IGFL1 (ENSCCAG00000020676) #11	PGLYRP1 (ENSCCAG00000032492) #17	CCDC61 (ENSCCAG00000028796) #18	NOVA2 (ENSCCAG00000037311) #19	MYPOP (ENSCCAG00000026331) #21	IRF2BP1 (ENSCCAG00000019148) #22	FOXA3 (ENSCCAG00000025829) #23	SYMPK (ENSCCAG00000036309) #24	RSPH6A (ENSCCAG00000026332) #25	DMWD (ENSCCAG00000035234) #26	DMPK (ENSCCAG00000000286) #27	SIX5 (ENSCCAG00000021156) #28	MEIOSIN (ENSCCAG00000026595) #29	ENSCCAG00000004615 #30	QPCTL (ENSCCAG00000006394) #31	SNRPD2 (ENSCCAG00000035396) #32	GIPR (ENSCCAG00000026591) #33	EML2 (ENSCCAG00000030345) #34	GPR4 (ENSCCAG00000014726) #35	OPA3 (ENSCCAG00000027564) #36	ENSCCAG00000029400 #37
Bolivian squirrel monkey	MODERN SPECIES	169	PRKD2 (ENSSBOG00000035342)	DACT3 (ENSSBOG00000033658)	GNG8 (ENSSBOG00000031506)	PTGIR (ENSSBOG00000035755)	CALM3 (ENSSBOG00000028097)	PNMA8A (ENSSBOG00000010196) ##7	PPP5C (ENSSBOG00000034724) #9	HIF3A (ENSSBOG00000032075) #10	ENSSBOG00000025247 #11	ENSSBOG00000034581	IGFL1 (ENSSBOG00000027173) #11	PGLYRP1 (ENSSBOG00000027039) #17	CCDC61 (ENSSBOG00000032328) #18	ENSSBOG00000001000 #19	MYPOP (ENSSBOG00000020847) #21	IRF2BP1 (ENSSBOG00000011517) #22	FOXA3 (ENSSBOG00000021160) #23	SYMPK (ENSSBOG00000034497) #24	RSPH6A (ENSSBOG00000026548) #25	DMWD (ENSSBOG00000035837) #26	DMPK (ENSSBOG00000022498) #27	SIX5 (ENSSBOG00000029066) #28	MEIOSIN (ENSSBOG00000020068) #29	FBXO46 (ENSSBOG00000016576) #30	ENSSBOG00000035164 #32	GIPR (ENSSBOG00000023899) #33	EML2 (ENSSBOG00000022777) #34	GPR4 (ENSSBOG00000019451) #35	OPA3 (ENSSBOG00000030278) #36	ENSSBOG00000025296 #37	PPM1N (ENSSBOG00000035628)
Mas night monkey	MODERN SPECIES	1284	PRKD2 (ENSANAG00000031053)	DACT3 (ENSANAG00000031822)	GNG8 (ENSANAG00000023974)	PTGIR (ENSANAG00000030542)	CALM3 (ENSANAG00000035148)	PNMA8A (ENSANAG00000029356) ##7	CCDC8 (ENSANAG00000027675) ##7	PPP5C (ENSANAG00000038336) #9	HIF3A (ENSANAG00000036285) #10	ENSANAG00000005209	IGFL1 (ENSANAG00000034626) #11	PGLYRP1 (ENSANAG00000036439) #17	CCDC61 (ENSANAG00000024615) #18	NOVA2 (ENSANAG00000022520) #19	MYPOP (ENSANAG00000034331) #21	IRF2BP1 (ENSANAG00000019622) #22	FOXA3 (ENSANAG00000036063) #23	SYMPK (ENSANAG00000021087) #24	RSPH6A (ENSANAG00000020023) #25	DMWD (ENSANAG00000030434) #26	DMPK (ENSANAG00000020485) #27	SIX5 (ENSANAG00000029935) #28	MEIOSIN (ENSANAG00000020001) #29	FBXO46 (ENSANAG00000019304) #30	QPCTL (ENSANAG00000035587) #31	ENSANAG00000019777 ##32	GIPR (ENSANAG00000033440) #33	ENSANAG00000029331 #34	GPR4 (ENSANAG00000019611) #35	OPA3 (ENSANAG00000023653) #36	ENSANAG00000034983 #37
Strepsirrhini	ANCESTRAL SPECIES	16	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000170636	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Lemuriformes	ANCESTRAL SPECIES	15	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Greater bamboo lemur	MODERN SPECIES	79												CCDC61 (ENSPSMG00000024535) #18	NOVA2 (ENSPSMG00000024538) #19	NANOS2 (ENSPSMG00000024540) #20	ENSPSMG00000024542	IRF2BP1 (ENSPSMG00000024544) #22	FOXA3 (ENSPSMG00000024546) #23	SYMPK (ENSPSMG00000024583) #24	RSPH6A (ENSPSMG00000024602) #25	DMWD (ENSPSMG00000024609) #26	DMPK (ENSPSMG00000024718) #27	SIX5 (ENSPSMG00000024751) #28	MEIOSIN (ENSPSMG00000024755) #29	FBXO46 (ENSPSMG00000024762) #30	QPCTL (ENSPSMG00000024775) #31	ENSPSMG00000024780 #32	GIPR (ENSPSMG00000024806) #33	EML2 (ENSPSMG00000024861) #34	GPR4 (ENSPSMG00000024886) #35	OPA3 (ENSPSMG00000024888) #36	VASP (ENSPSMG00000024889) #37
Coquerels sifaka	MODERN SPECIES	568	PRKD2 (ENSPCOG00000018544)	DACT3 (ENSPCOG00000024045)	GNG8 (ENSPCOG00000014293)	PTGIR (ENSPCOG00000022780)	CALM3 (ENSPCOG00000017236)	PNMA8B (ENSPCOG00000020660) ##7	ENSPCOG00000021687	PNMA8A (ENSPCOG00000025636) ##7	ENSPCOG00000019586 #9	HIF3A (ENSPCOG00000022775) #10	IGFL1 (ENSPCOG00000013757) #11	PGLYRP1 (ENSPCOG00000027266) #17	CCDC61 (ENSPCOG00000024920) #18	NOVA2 (ENSPCOG00000022693) #19	MYPOP (ENSPCOG00000020339) #21	IRF2BP1 (ENSPCOG00000007598) #22	FOXA3 (ENSPCOG00000022077) #23	SYMPK (ENSPCOG00000023740) #24	RSPH6A (ENSPCOG00000014359) #25	DMWD (ENSPCOG00000019486) #26	DMPK (ENSPCOG00000021802) #27	SIX5 (ENSPCOG00000013322) #28	MEIOSIN (ENSPCOG00000016822) #29	FBXO46 (ENSPCOG00000000122) #30	QPCTL (ENSPCOG00000018844) #31	SNRPD2 (ENSPCOG00000028811) #32	GIPR (ENSPCOG00000021969) #33	EML2 (ENSPCOG00000018079) #34	GPR4 (ENSPCOG00000000191) #35	OPA3 (ENSPCOG00000017860) #36	VASP (ENSPCOG00000013513) #37
Mouse lemur	MODERN SPECIES	14	FKRP (ENSMICG00000043598)	STRN4 (ENSMICG00000015400)	PRKD2 (ENSMICG00000015377)	DACT3 (ENSMICG00000042964)	GNG8 (ENSMICG00000011920)	PTGIR (ENSMICG00000029447)	CALM3 (ENSMICG00000028969)	PNMA8A (ENSMICG00000008321) ##7	PPP5C (ENSMICG00000031666) #9	HIF3A (ENSMICG00000016033) #10	IGFL1 (ENSMICG00000028260) #11	PGLYRP1 (ENSMICG00000033644) #17	CCDC61 (ENSMICG00000003511) #18	NOVA2 (ENSMICG00000028720) #19	MYPOP (ENSMICG00000045279) #21	IRF2BP1 (ENSMICG00000001894) #22	FOXA3 (ENSMICG00000038321) #23	SYMPK (ENSMICG00000001871) #24	RSPH6A (ENSMICG00000001866) #25	ENSMICG00000047465 #26	DMPK (ENSMICG00000001848) #27	SIX5 (ENSMICG00000042264) #28	MEIOSIN (ENSMICG00000036620) #29	FBXO46 (ENSMICG00000028138) #30	QPCTL (ENSMICG00000001842) #31	SNRPD2 (ENSMICG00000031545) #32	GIPR (ENSMICG00000001830) #33	EML2 (ENSMICG00000001822) #34	GPR4 (ENSMICG00000046993) #35	OPA3 (ENSMICG00000046590) #36	VASP (ENSMICG00000044750) #37
Bushbaby	MODERN SPECIES	267	DACT3 (ENSOGAG00000030948)	GNG8 (ENSOGAG00000029514)	PTGIR (ENSOGAG00000030472)	CALM3 (ENSOGAG00000014764)	PNMA8B (ENSOGAG00000028036) ##7	CCDC8 (ENSOGAG00000007549) ##7	ENSOGAG00000031114	PPP5C (ENSOGAG00000015987) #9	HIF3A (ENSOGAG00000008187) #10	ENSOGAG00000032211 #16	PGLYRP1 (ENSOGAG00000007305) #17	CCDC61 (ENSOGAG00000007302) #18	NOVA2 (ENSOGAG00000028973) #19	NANOS2 (ENSOGAG00000032290) #20	MYPOP (ENSOGAG00000013500) #21	IRF2BP1 (ENSOGAG00000030584) #22	FOXA3 (ENSOGAG00000030286) #23	SYMPK (ENSOGAG00000013483) #24	RSPH6A (ENSOGAG00000013480) #25	DMWD (ENSOGAG00000033214) #26	DMPK (ENSOGAG00000013463) #27	SIX5 (ENSOGAG00000013460) #28	FBXO46 (ENSOGAG00000033472) #30	QPCTL (ENSOGAG00000003952) #31	SNRPD2 (ENSOGAG00000030128) #32	GIPR (ENSOGAG00000012568) #33	EML2 (ENSOGAG00000033974) #34	GPR4 (ENSOGAG00000029132) #35	OPA3 (ENSOGAG00000033310) #36	VASP (ENSOGAG00000011276) #37	PPM1N (ENSOGAG00000033341)
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Glires	ANCESTRAL SPECIES	6	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Rodentia	ANCESTRAL SPECIES	8	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B.p.b.a.b.a.b #16	ENSGT00390000009557.B.p.b.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Marmotini	ANCESTRAL SPECIES	7	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.p.a.a #16	ENSGT00390000009557.B.p.a.b #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Marmotini_b	ANCESTRAL SPECIES	49										ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Squirrel	MODERN SPECIES	306											ENSSTOG00000031132	PGLYRP1 (ENSSTOG00000020188) #17	CCDC61 (ENSSTOG00000007497) #18	NOVA2 (ENSSTOG00000022126) #19	NANOS2 (ENSSTOG00000021724) #20	IRF2BP1 (ENSSTOG00000028673) #22	FOXA3 (ENSSTOG00000027457) #23	SYMPK (ENSSTOG00000001534) #24	RSPH6A (ENSSTOG00000001528) #25	DMWD (ENSSTOG00000006139) #26	DMPK (ENSSTOG00000001508) #27	SIX5 (ENSSTOG00000028295) #28	FBXO46 (ENSSTOG00000023556) #30	QPCTL (ENSSTOG00000013895) #31	SNRPD2 (ENSSTOG00000024377) #32	GIPR (ENSSTOG00000028727) #33	EML2 (ENSSTOG00000013316) #34	GPR4 (ENSSTOG00000022015) #35	OPA3 (ENSSTOG00000029170) #36	VASP (ENSSTOG00000027705) #37	PPM1N (ENSSTOG00000002827)
Arctic ground squirrel	MODERN SPECIES	297							ENSUPAG00010021459 #16	ENSUPAG00010021464 #16	ENSUPAG00010021465 #20	PGLYRP1 (ENSUPAG00010021468) #17	CCDC61 (ENSUPAG00010021470) #18	NOVA2 (ENSUPAG00010021477) #19	ENSUPAG00010021480 #20	ENSUPAG00010021483	MYPOP (ENSUPAG00010021489) #21	IRF2BP1 (ENSUPAG00010021494) #22	FOXA3 (ENSUPAG00010021496) #23	SYMPK (ENSUPAG00010021507) #24	RSPH6A (ENSUPAG00010021524) #25	DMWD (ENSUPAG00010021530) #26	DMPK (ENSUPAG00010021540) #27	SIX5 (ENSUPAG00010021595) #28	MEIOSIN (ENSUPAG00010021596) #29	FBXO46 (ENSUPAG00010021600) #30	QPCTL (ENSUPAG00010021602) #31	SNRPD2 (ENSUPAG00010021605) #32	GIPR (ENSUPAG00010021609) #33	EML2 (ENSUPAG00010021623) #34	GPR4 (ENSUPAG00010021640) #35	OPA3 (ENSUPAG00010021642) #36	VASP (ENSUPAG00010021647) #37
Alpin marmot	MODERN SPECIES	45	PPP5C (ENSMMMG00000013822) #9	HIF3A (ENSMMMG00000013829) #10	ENSMMMG00000013847 #16	ENSMMMG00000013856 #16	ENSMMMG00000013858	IGFL4 (ENSMMMG00000013859) #16	ENSMMMG00000013867	ENSMMMG00000013871	ENSMMMG00000013872 #16	ENSMMMG00000013880	NANOS2 (ENSMMMG00000013883) #20	PGLYRP1 (ENSMMMG00000013886) #17	CCDC61 (ENSMMMG00000013890) #18	NOVA2 (ENSMMMG00000013905) #19	MYPOP (ENSMMMG00000013910) #21	IRF2BP1 (ENSMMMG00000013923) #22	FOXA3 (ENSMMMG00000013927) #23	SYMPK (ENSMMMG00000013938) #24	RSPH6A (ENSMMMG00000013966) #25	DMPK (ENSMMMG00000013984) #27	ENSMMMG00000014098 #28	MEIOSIN (ENSMMMG00000014100) #29	FBXO46 (ENSMMMG00000014127) #30	QPCTL (ENSMMMG00000014131) #31	ENSMMMG00000014144 #32	GIPR (ENSMMMG00000014147) #33	EML2 (ENSMMMG00000014164) #34	GPR4 (ENSMMMG00000014230) #35	OPA3 (ENSMMMG00000014232) #36	VASP (ENSMMMG00000014235) #37	ENSMMMG00000014265
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005024643 #16	ENSSVLG00005024617 #16	ENSSVLG00005024595 #16	ENSSVLG00005024573 #16	ENSSVLG00005024560	ENSSVLG00005024545 #16	ENSSVLG00005024520 #16	ENSSVLG00005024476	ENSSVLG00005024415 #16	PGLYRP1 (ENSSVLG00005024391) #17	CCDC61 (ENSSVLG00005024368) #18	NOVA2 (ENSSVLG00005024343) #19	ENSSVLG00005024334	NANOS2 (ENSSVLG00005024317) #20	MYPOP (ENSSVLG00005024286) #21	IRF2BP1 (ENSSVLG00005024265) #22	FOXA3 (ENSSVLG00005024238) #23	SYMPK (ENSSVLG00005024212) #24	RSPH6A (ENSSVLG00005024118) #25	ENSSVLG00005024059 #26	DMPK (ENSSVLG00005023879) #27	SIX5 (ENSSVLG00005023801) #28	MEIOSIN (ENSSVLG00005023736) #29	FBXO46 (ENSSVLG00005023711) #30	QPCTL (ENSSVLG00005023664) #31	ENSSVLG00005023631 #32	GIPR (ENSSVLG00005023358) #33	EML2 (ENSSVLG00005023025) #34	GPR4 (ENSSVLG00005022943) #35	OPA3 (ENSSVLG00005022913) #36	VASP (ENSSVLG00005022815) #37
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00390000007074	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Hystricomorpha_a	ANCESTRAL SPECIES	39	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00390000007074	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Hystricomorpha_b	ANCESTRAL SPECIES	49	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00390000007074	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Long-tailed chinchilla	MODERN SPECIES	281	STRN4 (ENSCLAG00000001542)	PRKD2 (ENSCLAG00000001395)	ENSCLAG00000001276	GNG8 (ENSCLAG00000004399)	PTGIR (ENSCLAG00000004207)	CALM3 (ENSCLAG00000003822)	ENSCLAG00000003395	ENSCLAG00000002763	PPP5C (ENSCLAG00000001548) #9	HIF3A (ENSCLAG00000001139) #10	PGLYRP1 (ENSCLAG00000001072) #17	ENSCLAG00000001044 #18	ENSCLAG00000000991 #19	NANOS2 (ENSCLAG00000001832) #20	MYPOP (ENSCLAG00000001704) #21	IRF2BP1 (ENSCLAG00000001668) #22	FOXA3 (ENSCLAG00000001661) #23	SYMPK (ENSCLAG00000001206) #24	RSPH6A (ENSCLAG00000002444) #25	DMWD (ENSCLAG00000002306) #26	DMPK (ENSCLAG00000000761) #27	SIX5 (ENSCLAG00000000557) #28	MEIOSIN (ENSCLAG00000000408) #29	FBXO46 (ENSCLAG00000001009) #30	QPCTL (ENSCLAG00000000941) #31	SNRPD2 (ENSCLAG00000000931) #32	GIPR (ENSCLAG00000001135) #33	EML2 (ENSCLAG00000000732) #34	GPR4 (ENSCLAG00000017535) #35	OPA3 (ENSCLAG00000000726) #36	VASP (ENSCLAG00000001737) #37
Degu	MODERN SPECIES	238	STRN4 (ENSODEG00000009103)	PRKD2 (ENSODEG00000006559)	ENSODEG00000006767	GNG8 (ENSODEG00000007360)	PTGIR (ENSODEG00000007904)	CALM3 (ENSODEG00000008486)	PNMA8A (ENSODEG00000006429) ##7	ENSODEG00000006634	GPATCH1 (ENSODEG00000007103)	PPP5C (ENSODEG00000008796) #9	HIF3A (ENSODEG00000007136) #10	PGLYRP1 (ENSODEG00000006980) #17	CCDC61 (ENSODEG00000007872) #18	NOVA2 (ENSODEG00000008485) #19	MYPOP (ENSODEG00000006759) #21	IRF2BP1 (ENSODEG00000019485) #22	FOXA3 (ENSODEG00000007265) #23	SYMPK (ENSODEG00000007519) #24	ENSODEG00000019416	RSPH6A (ENSODEG00000006796) #25	DMWD (ENSODEG00000007827) #26	DMPK (ENSODEG00000008697) #27	SIX5 (ENSODEG00000007948) #28	ENSODEG00000008118 #29	FBXO46 (ENSODEG00000019705) #30	QPCTL (ENSODEG00000012513) #31	ENSODEG00000008857 #32	GIPR (ENSODEG00000010030) #33	EML2 (ENSODEG00000007963) #34	GPR4 (ENSODEG00000019587) #35	OPA3 (ENSODEG00000009423) #36
Naked mole-rat female	MODERN SPECIES	21	PTGIR (ENSHGLG00000007145)	Calm3 (ENSHGLG00000007790)	ENSHGLG00000009135	PNMA8A (ENSHGLG00000013517) ##7	ENSHGLG00000009334	CCDC8 (ENSHGLG00000048973) ##7	ENSHGLG00000015987 #9	HIF3A (ENSHGLG00000015903) #10	ENSHGLG00000032378 #11	PGLYRP1 (ENSHGLG00000044839) #17	CCDC61 (ENSHGLG00000016189) #18	NOVA2 (ENSHGLG00000016103) #19	NANOS2 (ENSHGLG00000038379) #20	ENSHGLG00000049227	MYPOP (ENSHGLG00000017201) #21	IRF2BP1 (ENSHGLG00000021426) #22	FOXA3 (ENSHGLG00000019353) #23	SYMPK (ENSHGLG00000005228) #24	RSPH6A (ENSHGLG00000009028) #25	DMWD (ENSHGLG00000005355) #26	DMPK (ENSHGLG00000006955) #27	ENSHGLG00000036477	ENSHGLG00000039927 #28	MEIOSIN (ENSHGLG00000005115) #29	FBXO46 (ENSHGLG00000046481) #30	QPCTL (ENSHGLG00000009596) #31	ENSHGLG00000015364 #32	GIPR (ENSHGLG00000015458) #33	EML2 (ENSHGLG00000018598) #34	GPR4 (ENSHGLG00000036046) #35	OPA3 (ENSHGLG00000016016) #36
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Kangaroo rat	MODERN SPECIES	475	Slc1a5 (ENSDORG00000008810)	Strn4 (ENSDORG00000005407)	Prkd2 (ENSDORG00000005405)	ENSDORG00000005404	Gng8 (ENSDORG00000005403)	Ptgir (ENSDORG00000005401)	Calm3 (ENSDORG00000029756)	Pnma8b (ENSDORG00000028483) ##7	ENSDORG00000023802 ##7	Ppp5c (ENSDORG00000004665) #9	Hif3a (ENSDORG00000004664) #10	Pglyrp1 (ENSDORG00000027993) #17	Ccdc61 (ENSDORG00000010042) #18	Nova2 (ENSDORG00000026568) #19	Mypop (ENSDORG00000015093) #21	Irf2bp1 (ENSDORG00000015094) #22	Foxa3 (ENSDORG00000023140) #23	ENSDORG00000007530 #24	Dmwd (ENSDORG00000013780) #26	Rsph6a (ENSDORG00000013782) #25	Dmpk (ENSDORG00000013775) #27	Six5 (ENSDORG00000026570) #28	Fbxo46 (ENSDORG00000029689) #30	Qpctl (ENSDORG00000001733) #31	Gipr (ENSDORG00000001717) #33	Eml2 (ENSDORG00000008122) #34	Opa3 (ENSDORG00000024215) #36	Vasp (ENSDORG00000008121) #37	Ppm1n (ENSDORG00000008119)	Rtn2 (ENSDORG00000008114)	Fosb (ENSDORG00000008112)
Myomorpha	ANCESTRAL SPECIES	20	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Muroidea	ANCESTRAL SPECIES	18	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT01100000263479.D.a.d.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cricetidae	ANCESTRAL SPECIES	29	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.b.a	ENSGT01100000263479.D.a.d.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cricetinae	ANCESTRAL SPECIES	42									ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Golden Hamster	MODERN SPECIES	834									ENSMAUG00000014769	ENSMAUG00000014730	Pglyrp1 (ENSMAUG00000009434) #17	ENSMAUG00000003976 #18	Nova2 (ENSMAUG00000014038) #19	Mypop (ENSMAUG00000018164) #21	ENSMAUG00000019605	Irf2bp1 (ENSMAUG00000002822) #22	Foxa3 (ENSMAUG00000007869) #23	Rsph6a (ENSMAUG00000016903) #25	Sympk (ENSMAUG00000015657) #24	ENSMAUG00000009219 #27	Six5 (ENSMAUG00000017419) #28	Meiosin (ENSMAUG00000016220) #29	Fbxo46 (ENSMAUG00000019697) #30	Qpctl (ENSMAUG00000014498) #31	Snrpd2 (ENSMAUG00000018849) #32	Gipr (ENSMAUG00000021032) #33	Eml2 (ENSMAUG00000016205) #34	Opa3 (ENSMAUG00000015768) #36	Vasp (ENSMAUG00000018921) #37	Ppm1n (ENSMAUG00000011353)	ENSMAUG00000018994
Cricetidae_B	ANCESTRAL SPECIES	41					ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.b.a	ENSGT01100000263479.D.a.d.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000029738 #16	ENSPEMG00000030976	ENSPEMG00000024553	ENSPEMG00000025786	ENSPEMG00000025341	ENSPEMG00000030981	ENSPEMG00000028933	ENSPEMG00000026361	ENSPEMG00000009668	Pglyrp1 (ENSPEMG00000030075) #17	Ccdc61 (ENSPEMG00000016005) #18	Nova2 (ENSPEMG00000025491) #19	ENSPEMG00000030568	Nanos2 (ENSPEMG00000014999) #20	Mypop (ENSPEMG00000012458) #21	Irf2bp1 (ENSPEMG00000009598) #22	Foxa3 (ENSPEMG00000016723) #23	Sympk (ENSPEMG00000007564) #24	Rsph6a (ENSPEMG00000009606) #25	Dmwd (ENSPEMG00000018276) #26	Dmpk (ENSPEMG00000030626) #27	Six5 (ENSPEMG00000014887) #28	Meiosin (ENSPEMG00000011376) #29	Fbxo46 (ENSPEMG00000012576) #30	Qpctl (ENSPEMG00000016557) #31	Snrpd2 (ENSPEMG00000004117) #32	Gipr (ENSPEMG00000014106) #33	Eml2 (ENSPEMG00000008721) #34	Gpr4 (ENSPEMG00000000584) #35	Opa3 (ENSPEMG00000024608) #36	Vasp (ENSPEMG00000001352) #37
Prairie vole	MODERN SPECIES	157								ENSMOCG00000017695	ENSMOCG00000003246	Pglyrp1 (ENSMOCG00000009253) #17	ENSMOCG00000019652 #18	Nova2 (ENSMOCG00000018489) #19	Nanos2 (ENSMOCG00000001985) #20	Mypop (ENSMOCG00000015120) #21	ENSMOCG00000000161	Irf2bp1 (ENSMOCG00000002955) #22	Foxa3 (ENSMOCG00000002412) #23	Sympk (ENSMOCG00000008388) #24	Rsph6a (ENSMOCG00000000271) #25	Dmwd (ENSMOCG00000017387) #26	ENSMOCG00000013066 #27	Six5 (ENSMOCG00000004062) #28	Meiosin (ENSMOCG00000014656) #29	Fbxo46 (ENSMOCG00000019977) #30	Qpctl (ENSMOCG00000015780) #31	Snrpd2 (ENSMOCG00000017080) #32	Gipr (ENSMOCG00000015992) #33	Eml2 (ENSMOCG00000013139) #34	Gpr4 (ENSMOCG00000001007) #35	Opa3 (ENSMOCG00000013947) #36	Vasp (ENSMOCG00000001451) #37
Murinae	ANCESTRAL SPECIES	19	ENSGT01100000263479.D.a.d.b.a.a.c.b	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.c	ENSGT01100000263479.D.a.d.b.a.a.d	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.d	ENSGT01100000263479.D.a.d.b.a.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.b	ENSGT01100000263479.D.a.d.b.b	ENSGT00390000009557.B #16	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Mus	ANCESTRAL SPECIES		ENSGT00940000161745 #10	ENSGT01100000263479.D.a.d.b.a.a.c.b	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.c	ENSGT01100000263479.D.a.d.b.a.a.d	ENSGT01100000263479.D.a.d.b.a.b.b	ENSGT01100000263479.D.a.d.b.b	ENSGT00390000009557.B #16	ENSGT01100000263517.b.d.m.a.a.a.b.`b.a	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740.g.a #19	ENSGT00940000161740.g.b #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Mus_A	ANCESTRAL SPECIES	1	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.c	ENSGT01100000263479.D.a.d.b.a.a.d	ENSGT01100000263479.D.a.d.b.a.b.b.d	ENSGT01100000263479.D.a.d.b.a.b.b.c	ENSGT01100000263479.D.a.d.b.b	ENSGT00390000009557.B #16	ENSGT01100000263517.b.d.m.a.a.a.b.`b.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740.g.a #19	ENSGT00940000161740.g.b #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045.i #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Mus_B	ANCESTRAL SPECIES		ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.b	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740.g.a #19	ENSGT00940000161740.g.b #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045.i #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Mouse	MODERN SPECIES	16	Psg26 (ENSMUSG00000070799)	Psg25 (ENSMUSG00000070798)	Psg27 (ENSMUSG00000070797)	Psg23 (ENSMUSG00000074359)	Psg21 (ENSMUSG00000070796)	Psg20 (ENSMUSG00000063305)	Psg22 (ENSMUSG00000044903)	Psg19 (ENSMUSG00000004542)	Psg17 (ENSMUSG00000004540)	Mill2 (ENSMUSG00000040987)	Pglyrp1 (ENSMUSG00000030413) #17	Ccdc61 (ENSMUSG00000074358) #18	Nova2 (ENSMUSG00000030411) #19	Nanos2 (ENSMUSG00000051965) #20	Mypop (ENSMUSG00000048481) #21	Irf2bp1 (ENSMUSG00000044030) #22	Foxa3 (ENSMUSG00000040891) #23	Sympk (ENSMUSG00000023118) #24	Rsph6a (ENSMUSG00000040866) #25	Dmwd (ENSMUSG00000030410) #26	Dmpk (ENSMUSG00000030409) #27	Six5 (ENSMUSG00000040841) #28	Meiosin (ENSMUSG00000085601) #29	Fbxo46 (ENSMUSG00000050428) #30	Qpctl (ENSMUSG00000030407) #31	Snrpd2 (ENSMUSG00000040824) #32	Gipr (ENSMUSG00000030406) #33	Eml2 (ENSMUSG00000040811) #34	Gpr4 (ENSMUSG00000044317) #35	Opa3 (ENSMUSG00000052214) #36	Vasp (ENSMUSG00000030403) #37
Mus_C	ANCESTRAL SPECIES	15	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.b	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740.g.a #19	ENSGT00940000161740.g.b #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045.i #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
spretus	MODERN SPECIES	16	MGP_SPRETEiJ_G0030334	MGP_SPRETEiJ_G0030335	Ceacam11 (MGP_SPRETEiJ_G0030336)	Ceacam13 (MGP_SPRETEiJ_G0030337)	Ceacam12 (MGP_SPRETEiJ_G0030338)	Igfl3 (MGP_SPRETEiJ_G0030339) #16	MGP_SPRETEiJ_G0030340	MGP_SPRETEiJ_G0030341	MGP_SPRETEiJ_G0030342	Pglyrp1 (MGP_SPRETEiJ_G0030343) #17	Ccdc61 (MGP_SPRETEiJ_G0030344) #18	Nova2 (MGP_SPRETEiJ_G0030345) #19	MGP_SPRETEiJ_G0030346 #19	Nanos2 (MGP_SPRETEiJ_G0030347) #20	Mypop (MGP_SPRETEiJ_G0030348) #21	Irf2bp1 (MGP_SPRETEiJ_G0030349) #22	Foxa3 (MGP_SPRETEiJ_G0030350) #23	MGP_SPRETEiJ_G0030351 #24	Rsph6a (MGP_SPRETEiJ_G0030352) #25	Dmwd (MGP_SPRETEiJ_G0030353) #26	Dmpk (MGP_SPRETEiJ_G0030354) #27	Six5 (MGP_SPRETEiJ_G0030355) #28	Meiosin (MGP_SPRETEiJ_G0030356) #29	Fbxo46 (MGP_SPRETEiJ_G0030357) #30	Qpctl (MGP_SPRETEiJ_G0030358) #31	MGP_SPRETEiJ_G0030359 #32	Gipr (MGP_SPRETEiJ_G0030360) #33	Eml2 (MGP_SPRETEiJ_G0030361) #34	Gpr4 (MGP_SPRETEiJ_G0030362) #35	Opa3 (MGP_SPRETEiJ_G0030363) #36	Vasp (MGP_SPRETEiJ_G0030364) #37
Steppe mouse	MODERN SPECIES	2900											ENSMSIG00000004443 #19	ENSMSIG00000004448 #19	Nanos2 (ENSMSIG00000004468) #20	Mypop (ENSMSIG00000004475) #21	ENSMSIG00000004494	Irf2bp1 (ENSMSIG00000004499) #22	Foxa3 (ENSMSIG00000004505) #23	Sympk (ENSMSIG00000004528) #24	Rsph6a (ENSMSIG00000004641) #25	ENSMSIG00000004668 #26	Dmpk (ENSMSIG00000004700) #27	Six5 (ENSMSIG00000004988) #28	Meiosin (ENSMSIG00000004995) #29	Fbxo46 (ENSMSIG00000005049) #30	Qpctl (ENSMSIG00000005068) #31	Snrpd2 (ENSMSIG00000005096) #32	Gipr (ENSMSIG00000005108) #33	Eml2 (ENSMSIG00000005175) #34	Gpr4 (ENSMSIG00000005462) #35	Opa3 (ENSMSIG00000005466) #36	Vasp (ENSMSIG00000005496) #37
Ryukyu mouse	MODERN SPECIES	16	Ccdc8 (MGP_CAROLIEiJ_G0029250) ##7	Ppp5c (MGP_CAROLIEiJ_G0029251) #9	Hif3a (MGP_CAROLIEiJ_G0029252) #10	Psg16 (MGP_CAROLIEiJ_G0029253)	MGP_CAROLIEiJ_G0029254	MGP_CAROLIEiJ_G0029255	MGP_CAROLIEiJ_G0029256	Igfl3 (MGP_CAROLIEiJ_G0029257) #16	Mill1 (MGP_CAROLIEiJ_G0029258)	Pglyrp1 (MGP_CAROLIEiJ_G0029259) #17	Ccdc61 (MGP_CAROLIEiJ_G0029260) #18	MGP_CAROLIEiJ_G0029262 #19	MGP_CAROLIEiJ_G0029261 #19	Nanos2 (MGP_CAROLIEiJ_G0029263) #20	Mypop (MGP_CAROLIEiJ_G0029264) #21	Irf2bp1 (MGP_CAROLIEiJ_G0029265) #22	Foxa3 (MGP_CAROLIEiJ_G0029266) #23	Sympk (MGP_CAROLIEiJ_G0029267) #24	Rsph6a (MGP_CAROLIEiJ_G0029268) #25	Dmwd (MGP_CAROLIEiJ_G0029269) #26	Dmpk (MGP_CAROLIEiJ_G0029270) #27	Six5 (MGP_CAROLIEiJ_G0029271) #28	Meiosin (MGP_CAROLIEiJ_G0029272) #29	Fbxo46 (MGP_CAROLIEiJ_G0029273) #30	Qpctl (MGP_CAROLIEiJ_G0029274) #31	Snrpd2 (MGP_CAROLIEiJ_G0029275) #32	Gipr (MGP_CAROLIEiJ_G0029276) #33	Eml2 (MGP_CAROLIEiJ_G0029277) #34	Gpr4 (MGP_CAROLIEiJ_G0029278) #35	Opa3 (MGP_CAROLIEiJ_G0029279) #36	Vasp (MGP_CAROLIEiJ_G0029280) #37
Shrew mouse	MODERN SPECIES	10	Psg16 (MGP_PahariEiJ_G0021109)	Psg29 (MGP_PahariEiJ_G0021110)	Ceacam3 (MGP_PahariEiJ_G0021111)	MGP_PahariEiJ_G0021112	MGP_PahariEiJ_G0021113 #16	Psg17 (MGP_PahariEiJ_G0021114)	MGP_PahariEiJ_G0021116	MGP_PahariEiJ_G0021115	MGP_PahariEiJ_G0021117	Pglyrp1 (MGP_PahariEiJ_G0021119) #17	Ccdc61 (MGP_PahariEiJ_G0021120) #18	Nova2 (MGP_PahariEiJ_G0021121) #19	MGP_PahariEiJ_G0021122 #19	Nanos2 (MGP_PahariEiJ_G0021123) #20	Mypop (MGP_PahariEiJ_G0021124) #21	Irf2bp1 (MGP_PahariEiJ_G0021125) #22	Foxa3 (MGP_PahariEiJ_G0021126) #23	Sympk (MGP_PahariEiJ_G0021127) #24	Rsph6a (MGP_PahariEiJ_G0021128) #25	Dmwd (MGP_PahariEiJ_G0021129) #26	Dmpk (MGP_PahariEiJ_G0021130) #27	Six5 (MGP_PahariEiJ_G0021131) #28	Meiosin (MGP_PahariEiJ_G0021132) #29	Fbxo46 (MGP_PahariEiJ_G0021133) #30	Qpctl (MGP_PahariEiJ_G0021134) #31	Snrpd2 (MGP_PahariEiJ_G0021135) #32	Gipr (MGP_PahariEiJ_G0021136) #33	Eml2 (MGP_PahariEiJ_G0021137) #34	Gpr4 (MGP_PahariEiJ_G0021138) #35	Opa3 (MGP_PahariEiJ_G0021139) #36	Vasp (MGP_PahariEiJ_G0021140) #37
Rat	MODERN SPECIES		Mill1 (ENSRNOG00000017699)	ENSRNOG00000066787	Psg19 (ENSRNOG00000038101)	LOC102557319 (ENSRNOG00000071114)	ENSRNOG00000068164	AC093995.1 (ENSRNOG00000026891)	AC093995.3 (ENSRNOG00000051815)	ENSRNOG00000062548	Micb (ENSRNOG00000057645)	Pglyrp1 (ENSRNOG00000013395) #17	Ccdc61 (ENSRNOG00000013767) #18	Nova2 (ENSRNOG00000013847) #19	Nanos2 (ENSRNOG00000038088) #20	Mypop (ENSRNOG00000014132) #21	AC110846.1 (ENSRNOG00000038087)	Irf2bp1 (ENSRNOG00000014252) #22	Foxa3 (ENSRNOG00000014256) #23	Sympk (ENSRNOG00000014353) #24	Rsph6a (ENSRNOG00000061526) #25	Dmwd (ENSRNOG00000014984) #26	Dmpk (ENSRNOG00000015085) #27	Six5 (ENSRNOG00000060146) #28	Meiosin (ENSRNOG00000067421) #29	Fbxo46 (ENSRNOG00000008815) #30	Qpctl (ENSRNOG00000015413) #31	Snrpd2 (ENSRNOG00000015844) #32	Gipr (ENSRNOG00000015860) #33	Eml2 (ENSRNOG00000030127) #34	Gpr4 (ENSRNOG00000016362) #35	Opa3 (ENSRNOG00000025890)	Opa3 (ENSRNOG00000064373) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1616											ENSNGAG00000016192	Pglyrp1 (ENSNGAG00000012535) #17	ENSNGAG00000015060 #18	Nova2 (ENSNGAG00000014104) #19	Mypop (ENSNGAG00000010823) #21	Irf2bp1 (ENSNGAG00000016131) #22	Foxa3 (ENSNGAG00000018714) #23	Sympk (ENSNGAG00000000820) #24	Rsph6a (ENSNGAG00000020845) #25	Dmwd (ENSNGAG00000019523) #26	ENSNGAG00000013526 #27	Six5 (ENSNGAG00000010611) #28	Meiosin (ENSNGAG00000006560) #29	Fbxo46 (ENSNGAG00000017717) #30	Qpctl (ENSNGAG00000012368) #31	ENSNGAG00000010411 #32	Gipr (ENSNGAG00000014088) #33	Eml2 (ENSNGAG00000016674) #34	Gpr4 (ENSNGAG00000009194) #35	Opa3 (ENSNGAG00000015660) #36	Vasp (ENSNGAG00000012981) #37
Lesser Egyptian jerboa	MODERN SPECIES	277														Nova2 (ENSJJAG00000000944) #19	Mypop (ENSJJAG00000007992) #21	Irf2bp1 (ENSJJAG00000011679) #22	Foxa3 (ENSJJAG00000006780) #23	Sympk (ENSJJAG00000006633) #24	Dmwd (ENSJJAG00000004567) #26	ENSJJAG00000004112 #27	Six5 (ENSJJAG00000003876) #28	ENSJJAG00000003426 #29	Fbxo46 (ENSJJAG00000011631) #30	Qpctl (ENSJJAG00000002781) #31	Snrpd2 (ENSJJAG00000002622) #32
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Suina	ANCESTRAL SPECIES	2	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000170636	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Chacoan peccary	MODERN SPECIES	799	FKRP (ENSCWAG00000010618)	STRN4 (ENSCWAG00000010545)	PRKD2 (ENSCWAG00000010476)	DACT3 (ENSCWAG00000010426)	GNG8 (ENSCWAG00000010405)	PTGIR (ENSCWAG00000010365)	CALM3 (ENSCWAG00000010293)	PPP5C (ENSCWAG00000010062) #9	HIF3A (ENSCWAG00000008758) #10	PGLYRP1 (ENSCWAG00000008579) #17	CCDC61 (ENSCWAG00000008530) #18	NOVA2 (ENSCWAG00000008485) #19	NANOS2 (ENSCWAG00000008461) #20	ENSCWAG00000008443	MYPOP (ENSCWAG00000008415) #21	IRF2BP1 (ENSCWAG00000008392) #22	FOXA3 (ENSCWAG00000008358) #23	SYMPK (ENSCWAG00000008306) #24	RSPH6A (ENSCWAG00000008233) #25	DMWD (ENSCWAG00000008169) #26	DMPK (ENSCWAG00000008009) #27	SIX5 (ENSCWAG00000007894) #28	FBXO46 (ENSCWAG00000007733) #30	QPCTL (ENSCWAG00000007680) #31	SNRPD2 (ENSCWAG00000007655) #32	GIPR (ENSCWAG00000007383) #33	EML2 (ENSCWAG00000006972) #34	GPR4 (ENSCWAG00000006910) #35	OPA3 (ENSCWAG00000006875) #36	VASP (ENSCWAG00000006847) #37	PPM1N (ENSCWAG00000006758)
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cetacea	ANCESTRAL SPECIES	6	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Odontoceti	ANCESTRAL SPECIES	6	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a.d ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a.d ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a.d ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Narwhal	MODERN SPECIES	296	PRKD2 (ENSMMNG00015008344)	DACT3 (ENSMMNG00015008322)	GNG8 (ENSMMNG00015008308)	PTGIR (ENSMMNG00015008294)	CALM3 (ENSMMNG00015008255)	CCDC8 (ENSMMNG00015008209) ##7	PNMA8C (ENSMMNG00015008203) #7	ENSMMNG00015008192 ##7	PPP5C (ENSMMNG00015008098) #9	HIF3A (ENSMMNG00015007921) #10	CCDC61 (ENSMMNG00015007871) #18	NOVA2 (ENSMMNG00015007847) #19	NANOS2 (ENSMMNG00015007835) #20	ENSMMNG00015007819	MYPOP (ENSMMNG00015007811) #21	IRF2BP1 (ENSMMNG00015007799) #22	FOXA3 (ENSMMNG00015007790) #23	SYMPK (ENSMMNG00015007752) #24	RSPH6A (ENSMMNG00015007710) #25	DMWD (ENSMMNG00015007676) #26	DMPK (ENSMMNG00015007633) #27	SIX5 (ENSMMNG00015007599) #28	MEIOSIN (ENSMMNG00015007567) #29	FBXO46 (ENSMMNG00015007550) #30	QPCTL (ENSMMNG00015007522) #31	ENSMMNG00015007488 #32	GIPR (ENSMMNG00015007342) #33	EML2 (ENSMMNG00015007133) #34	GPR4 (ENSMMNG00015007074) #35	OPA3 (ENSMMNG00015007066) #36	VASP (ENSMMNG00015007042) #37
Beluga whale	MODERN SPECIES	14	PRKD2 (ENSDLEG00000004024)	DACT3 (ENSDLEG00000004034)	GNG8 (ENSDLEG00000004040)	PTGIR (ENSDLEG00000004041)	CALM1 (ENSDLEG00000004044)	CCDC8 (ENSDLEG00000004049) ##7	PNMA8C (ENSDLEG00000004056) #7	PNMA8A (ENSDLEG00000004062) ##7	PPP5C (ENSDLEG00000004066) #9	HIF3A (ENSDLEG00000004077) #10	CCDC61 (ENSDLEG00000004090) #18	NOVA2 (ENSDLEG00000004096) #19	NANOS2 (ENSDLEG00000004101) #20	ENSDLEG00000004104	MYPOP (ENSDLEG00000004110) #21	IRF2BP1 (ENSDLEG00000004112) #22	FOXA3 (ENSDLEG00000004115) #23	SYMPK (ENSDLEG00000004122) #24	RSPH6A (ENSDLEG00000004133) #25	DMWD (ENSDLEG00000000077) #26	DMPK (ENSDLEG00000000090) #27	SIX5 (ENSDLEG00000000119) #28	FBXO46 (ENSDLEG00000000130) #30	QPCTL (ENSDLEG00000000148) #31	SNRPD2 (ENSDLEG00000000188) #32	GIPR (ENSDLEG00000000221) #33	EML2 (ENSDLEG00000000275) #34	OPA3 (ENSDLEG00000000472) #36	VASP (ENSDLEG00000000495) #37	ENSDLEG00000000541	RTN2 (ENSDLEG00000000550)
Vaquita	MODERN SPECIES	10	DACT3 (ENSPSNG00000021641)	GNG8 (ENSPSNG00000021667)	PTGIR (ENSPSNG00000021685)	CALM3 (ENSPSNG00000005927)	ENSPSNG00000005987 ##7	CCDC8 (ENSPSNG00000006015) ##7	PNMA8C (ENSPSNG00000006027) #7	PNMA8A (ENSPSNG00000006045) ##7	PPP5C (ENSPSNG00000006084) #9	HIF3A (ENSPSNG00000006147) #10	CCDC61 (ENSPSNG00000006217) #18	NOVA2 (ENSPSNG00000006243) #19	NANOS2 (ENSPSNG00000006285) #20	MYPOP (ENSPSNG00000006305) #21	ENSPSNG00000006334	IRF2BP1 (ENSPSNG00000006350) #22	FOXA3 (ENSPSNG00000006380) #23	SYMPK (ENSPSNG00000006567) #24	ENSPSNG00000006688 #25	DMWD (ENSPSNG00000006737) #26	SIX5 (ENSPSNG00000006825) #28	FBXO46 (ENSPSNG00000006942) #30	QPCTL (ENSPSNG00000006987) #31	ENSPSNG00000007055 #32	GIPR (ENSPSNG00000007181) #33	EML2 (ENSPSNG00000007601) #34	GPR4 (ENSPSNG00000007964) #35	OPA3 (ENSPSNG00000007984) #36	VASP (ENSPSNG00000008004) #37	PPM1N (ENSPSNG00000008040)	RTN2 (ENSPSNG00000008107)
Sperm whale	MODERN SPECIES	24														NANOS2 (ENSPCTG00005022323) #20	MYPOP (ENSPCTG00005022327) #21	IRF2BP1 (ENSPCTG00005022328) #22	FOXA3 (ENSPCTG00005022331) #23	SYMPK (ENSPCTG00005012494) #24	RSPH6A (ENSPCTG00005012600) #25	DMWD (ENSPCTG00005012784) #26	DMPK (ENSPCTG00005012889) #27	SIX5 (ENSPCTG00005013002) #28	MEIOSIN (ENSPCTG00005013085) #29	FBXO46 (ENSPCTG00005013309) #30	QPCTL (ENSPCTG00005013345) #31	SNRPD2 (ENSPCTG00005013438) #32	GIPR (ENSPCTG00005013545) #33	EML2 (ENSPCTG00005014306) #34	OPA3 (ENSPCTG00005014977) #36
Blue whale	MODERN SPECIES	10	DACT3 (ENSBMSG00010020888)	GNG8 (ENSBMSG00010020908)	PTGIR (ENSBMSG00010020919)	CALM3 (ENSBMSG00010020940)	CCDC8 (ENSBMSG00010020979) ##7	PNMA8A (ENSBMSG00010020996) ##7	PPP5C (ENSBMSG00010021017) #9	HIF3A (ENSBMSG00010021058) #10	IGFL1 (ENSBMSG00010021137) #11	PGLYRP1 (ENSBMSG00010021143) #17	CCDC61 (ENSBMSG00010021160) #18	NOVA2 (ENSBMSG00010021172) #19	NANOS2 (ENSBMSG00010014044) #20	MYPOP (ENSBMSG00010014070) #21	ENSBMSG00010014093	IRF2BP1 (ENSBMSG00010014111) #22	FOXA3 (ENSBMSG00010014125) #23	SYMPK (ENSBMSG00010014199) #24	ENSBMSG00010014352 #25	DMWD (ENSBMSG00010014405) #26	DMPK (ENSBMSG00010014458) #27	SIX5 (ENSBMSG00010014523) #28	MEIOSIN (ENSBMSG00010014548) #29	FBXO46 (ENSBMSG00010014606) #30	QPCTL (ENSBMSG00010014644) #31	SNRPD2 (ENSBMSG00010014687) #32	GIPR (ENSBMSG00010014763) #33	EML2 (ENSBMSG00010015025) #34	GPR4 (ENSBMSG00010015297) #35	OPA3 (ENSBMSG00010015309) #36	VASP (ENSBMSG00010015338) #37
Pecora	ANCESTRAL SPECIES	4	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Yarkand deer	MODERN SPECIES	27	ENSCHYG00000014899	GNG8 (ENSCHYG00000014847)	PTGIR (ENSCHYG00000014757)	CALM3 (ENSCHYG00000014426)	CCDC8 (ENSCHYG00000014352) ##7	ENSCHYG00000014216	PNMA8A (ENSCHYG00000014197) ##7	PPP5C (ENSCHYG00000013920) #9	HIF3A (ENSCHYG00000013457) #10	ENSCHYG00000013392 #11	PGLYRP1 (ENSCHYG00000013331) #17	ENSCHYG00000013047	NOVA2 (ENSCHYG00000013004) #19	NANOS2 (ENSCHYG00000012987) #20	MYPOP (ENSCHYG00000012965) #21	IRF2BP1 (ENSCHYG00000012957) #22	FOXA3 (ENSCHYG00000012937) #23	SYMPK (ENSCHYG00000012597) #24	RSPH6A (ENSCHYG00000012525) #25	DMWD (ENSCHYG00000012422) #26	DMPK (ENSCHYG00000011768) #27	SIX5 (ENSCHYG00000011699) #28	MEIOSIN (ENSCHYG00000011599) #29	FBXO46 (ENSCHYG00000011575) #30	QPCTL (ENSCHYG00000011523) #31	SNRPD2 (ENSCHYG00000011477) #32	GIPR (ENSCHYG00000011385) #33	EML2 (ENSCHYG00000010342) #34	GPR4 (ENSCHYG00000010273) #35	ENSCHYG00000010242	OPA3 (ENSCHYG00000010190) #36
Percora_a	ANCESTRAL SPECIES	4	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Bovidae	ANCESTRAL SPECIES	4	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	3	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000157251.kb.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120.i #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Bos	ANCESTRAL SPECIES	4	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000157251.kb.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120.i #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Bos_b	ANCESTRAL SPECIES		ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000157251.kb.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120.i #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cow	MODERN SPECIES	9	GNG8 (ENSBTAG00000017762)	PTGIR (ENSBTAG00000014585)	CALM3 (ENSBTAG00000014583)	CCDC8 (ENSBTAG00000018181) ##7	PNMA8A (ENSBTAG00000009337) ##7	PPP5C (ENSBTAG00000008014) #9	HIF3A (ENSBTAG00000018948) #10	IGFL1 (ENSBTAG00000000027) #11	ENSBTAG00000023367	PGLYRP1 (ENSBTAG00000002635) #17	CCDC61 (ENSBTAG00000005819) #18	NOVA2 (ENSBTAG00000013157) #19	NANOS2 (ENSBTAG00000047505) #20	ENSBTAG00000054722	MYPOP (ENSBTAG00000045708) #21	ENSBTAG00000050077 #22	FOXA3 (ENSBTAG00000012104) #23	SYMPK (ENSBTAG00000012101) #24	RSPH6A (ENSBTAG00000012097) #25	DMWD (ENSBTAG00000021417) #26	DMPK (ENSBTAG00000013347) #27	SIX5 (ENSBTAG00000013346) #28	FBXO46 (ENSBTAG00000048966) #30	QPCTL (ENSBTAG00000012176) #31	SNRPD2 (ENSBTAG00000012177) #32	GIPR (ENSBTAG00000005527) #33	EML2 (ENSBTAG00000015764) #34	GPR4 (ENSBTAG00000018398) #35	OPA3 (ENSBTAG00000019605) #36	ENSBTAG00000049026 #36	VASP (ENSBTAG00000019604) #37
Hybrid Bos Indicus	MODERN SPECIES	9	DACT3 (ENSBIXG00005024273)	GNG8 (ENSBIXG00005004139)	PTGIR (ENSBIXG00005024224)	CALM3 (ENSBIXG00005024193)	CCDC8 (ENSBIXG00005024071) ##7	PNMA8A (ENSBIXG00005023944) ##7	PPP5C (ENSBIXG00005023931) #9	HIF3A (ENSBIXG00005023842) #10	IGFL1 (ENSBIXG00005023661) #11	ENSBIXG00005023638	PGLYRP1 (ENSBIXG00005023625) #17	CCDC61 (ENSBIXG00005004038) #18	NOVA2 (ENSBIXG00005023501) #19	NANOS2 (ENSBIXG00005023479) #20	MYPOP (ENSBIXG00005023469) #21	ENSBIXG00005023453 #22	FOXA3 (ENSBIXG00005023439) #23	SYMPK (ENSBIXG00005023428) #24	RSPH6A (ENSBIXG00005023393) #25	DMWD (ENSBIXG00005023338) #26	DMPK (ENSBIXG00005003978) #27	SIX5 (ENSBIXG00005023223) #28	MEIOSIN (ENSBIXG00005023205) #29	FBXO46 (ENSBIXG00005003957) #30	QPCTL (ENSBIXG00005003947) #31	SNRPD2 (ENSBIXG00005006167) #32	GIPR (ENSBIXG00005023073) #33	EML2 (ENSBIXG00005022960) #34	ENSBIXG00005022571 #36	VASP (ENSBIXG00005022552) #37	PPM1N (ENSBIXG00005022517)
Bos_a	ANCESTRAL SPECIES	16	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120.i #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Domestic yak	MODERN SPECIES	12	PRKD2 (ENSBGRG00000017664)	DACT3 (ENSBGRG00000017786)	GNG8 (ENSBGRG00000017906)	PTGIR (ENSBGRG00000017949)	CALM3 (ENSBGRG00000018002)	CCDC8 (ENSBGRG00000018249) ##7	PNMA8A (ENSBGRG00000018367) ##7	PPP5C (ENSBGRG00000018431) #9	HIF3A (ENSBGRG00000018647) #10	IGFL1 (ENSBGRG00000019136) #11	PGLYRP1 (ENSBGRG00000019198) #17	CCDC61 (ENSBGRG00000019266) #18	NOVA2 (ENSBGRG00000019401) #19	NANOS2 (ENSBGRG00000019460) #20	MYPOP (ENSBGRG00000019478) #21	IRF2BP1 (ENSBGRG00000019522) #22	FOXA3 (ENSBGRG00000019533) #23	SYMPK (ENSBGRG00000019603) #24	RSPH6A (ENSBGRG00000019805) #25	DMWD (ENSBGRG00000019948) #26	SIX5 (ENSBGRG00000020815) #28	MEIOSIN (ENSBGRG00000020860) #29	FBXO46 (ENSBGRG00000020994) #30	QPCTL (ENSBGRG00000021008) #31	SNRPD2 (ENSBGRG00000021083) #32	GIPR (ENSBGRG00000021139) #33	EML2 (ENSBGRG00000021380) #34	GPR4 (ENSBGRG00000021757) #35	OPA3 (ENSBGRG00000021767) #36	VASP (ENSBGRG00000021830) #37	PPM1N (ENSBGRG00000021919)
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000162120.j #22
Bos	ANCESTRAL SPECIES	39	ENSGT00940000155339	ENSGT00940000153883.a.g.b	ENSGT00550000074964.i.a	ENSGT00940000155145.tb	ENSGT00390000002253.c.b	ENSGT00940000156123.b	ENSGT00710000106792.o	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00950000183069.b	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A	ENSGT00940000161322.e	ENSGT00940000161322.f.b.b	ENSGT00940000162120.j #22	ENSGT00940000162451	ENSGT00940000157297	ENSGT00940000157996	ENSGT00960000192752	ENSGT00390000014020	ENSGT00940000157196	ENSGT00390000002615.n	ENSGT00940000160111	ENSGT00940000159999	ENSGT00390000011174.a	ENSGT00390000008142.w	ENSGT00940000153737.a	ENSGT00940000161870	ENSGT00940000156455	ENSGT00940000160863
Bos_b	ANCESTRAL SPECIES	41	ENSGT00940000155145.tb	ENSGT00390000002253.c.b.b	ENSGT00390000002253.c.b.a	ENSGT00940000156123.b	ENSGT00710000106792.o	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00950000183069.b	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A	ENSGT00940000161322.e	ENSGT00940000161322.f.b.b	ENSGT00940000161322.f.b.a	ENSGT00390000012726	ENSGT00940000162120.j #22	ENSGT00940000162451	ENSGT00940000157297	ENSGT00940000157996	ENSGT00960000192752	ENSGT00390000014020	ENSGT00940000157196	ENSGT00390000002615.n	ENSGT00940000160111	ENSGT00940000159999	ENSGT00390000011174.a	ENSGT00390000008142.w	ENSGT00940000153737.a	ENSGT00940000161870	ENSGT00940000156455	ENSGT00940000160863
Hybrid Bos Indicus	MODERN SPECIES	315	SH2D1A (ENSBIXG00005019713)	ENSBIXG00005019727	TENM1 (ENSBIXG00005019874)	ENSBIXG00005002631	ENSBIXG00005019966	ENSBIXG00005006883	ENSBIXG00005003271	ENSBIXG00005020014	ENSBIXG00005020023	ENSBIXG00005003281	ENSBIXG00005003286	ENSBIXG00005003291	ENSBIXG00005003296	ENSBIXG00005020075	PRR32 (ENSBIXG00005020100)	ENSBIXG00005020132 #22	ACTRT1 (ENSBIXG00005003305)	SMARCA1 (ENSBIXG00005020268)	OCRL (ENSBIXG00005020341)	ENSBIXG00005020367	ENSBIXG00005003439	XPNPEP2 (ENSBIXG00005020458)	ENSBIXG00005020478	SASH3 (ENSBIXG00005020501)	ZDHHC9 (ENSBIXG00005020566)	ENSBIXG00005020599	ENSBIXG00005020703	BCORL1 (ENSBIXG00005020768)	ELF4 (ENSBIXG00005020826)	AIFM1 (ENSBIXG00005021020)	RAB33A (ENSBIXG00005021051)
Cow	MODERN SPECIES	177	C1GALT1C1 (ENSBTAG00000021410)	ENSBTAG00000038497	CT47B1 (ENSBTAG00000049471)	GRIA3 (ENSBTAG00000011833)	THOC2 (ENSBTAG00000008388)	XIAP (ENSBTAG00000040350)	STAG2 (ENSBTAG00000009121)	ENSBTAG00000052925	SH2D1A (ENSBTAG00000026067)	TENM1 (ENSBTAG00000018819)	ENSBTAG00000046796	ENSBTAG00000022399	ENSBTAG00000054321	ENSBTAG00000054511	PRR32 (ENSBTAG00000008763)	ENSBTAG00000000154 #22	ACTRT1 (ENSBTAG00000047701)	SMARCA1 (ENSBTAG00000002292)	OCRL (ENSBTAG00000018247)	ENSBTAG00000053073	APLN (ENSBTAG00000019993)	XPNPEP2 (ENSBTAG00000010345)	ENSBTAG00000026011	SASH3 (ENSBTAG00000002041)	ZDHHC9 (ENSBTAG00000015354)	ENSBTAG00000046395	UTP14A (ENSBTAG00000013671)	BCORL1 (ENSBTAG00000004962)	ELF4 (ENSBTAG00000019061)	AIFM1 (ENSBTAG00000006838)	RAB33A (ENSBTAG00000034712)
Bos_a	ANCESTRAL SPECIES	64			ENSGT00390000002253.c.a.a.a.a	ENSGT00940000156123.b	ENSGT00710000106792.o	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00950000183069.b	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A	ENSGT00940000161322.e	ENSGT00940000161322.f.b.b	ENSGT00940000161322.f.a.a	ENSGT00390000012726	ENSGT00940000162120.j #22	ENSGT00940000162451	ENSGT00940000157297	ENSGT00940000157996	ENSGT00960000192752	ENSGT00390000014020	ENSGT00940000157196	ENSGT00390000002615.n	ENSGT00940000160111	ENSGT00940000159999	ENSGT00390000011174.a	ENSGT00390000008142.w	ENSGT00940000153737.a	ENSGT00940000161870	ENSGT00940000156455	ENSGT00940000160863
American bison	MODERN SPECIES	3227	PRKD2 (ENSBBBG00000007407)	ENSBBBG00000014572	GNG8 (ENSBBBG00000007169)	PTGIR (ENSBBBG00000014585)	CALM3 (ENSBBBG00000014637)	CCDC8 (ENSBBBG00000007256) ##7	PNMA8A (ENSBBBG00000014698) ##7	PPP5C (ENSBBBG00000014726) #9	HIF3A (ENSBBBG00000014756) #10	IGFL1 (ENSBBBG00000014765) #11	ENSBBBG00000009057	PGLYRP1 (ENSBBBG00000006949) #17	CCDC61 (ENSBBBG00000002834) #18	NOVA2 (ENSBBBG00000014819) #19	NANOS2 (ENSBBBG00000014825) #20	IRF2BP1 (ENSBBBG00000014836) #22	FOXA3 (ENSBBBG00000014845) #23	SYMPK (ENSBBBG00000014863) #24	RSPH6A (ENSBBBG00000003680) #25	DMWD (ENSBBBG00000001216) #26	DMPK (ENSBBBG00000001064) #27	ENSBBBG00000001050 #28	MEIOSIN (ENSBBBG00000001018) #29	FBXO46 (ENSBBBG00000001009) #30	QPCTL (ENSBBBG00000000961) #31	SNRPD2 (ENSBBBG00000000935) #32	GIPR (ENSBBBG00000000834) #33	EML2 (ENSBBBG00000014978) #34	GPR4 (ENSBBBG00000003575) #35	OPA3 (ENSBBBG00000003720) #36	VASP (ENSBBBG00000015011) #37
Caprinae	ANCESTRAL SPECIES	4	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37	ENSGT00940000162694
Goat	MODERN SPECIES	9	PRKD2 (ENSCHIG00000021220)	DACT3 (ENSCHIG00000021818)	GNG8 (ENSCHIG00000018099)	PTGIR (ENSCHIG00000016612)	CALM3 (ENSCHIG00000011296)	CCDC8 (ENSCHIG00000010061) ##7	ENSCHIG00000026916	PPP5C (ENSCHIG00000024557) #9	HIF3A (ENSCHIG00000018939) #10	IGFL1 (ENSCHIG00000023173) #11	PGLYRP1 (ENSCHIG00000013020) #17	CCDC61 (ENSCHIG00000024140) #18	NOVA2 (ENSCHIG00000010547) #19	NANOS2 (ENSCHIG00000012637) #20	MYPOP (ENSCHIG00000019016) #21	IRF2BP1 (ENSCHIG00000002525) #22	FOXA3 (ENSCHIG00000011232) #23	SYMPK (ENSCHIG00000026784) #24	RSPH6A (ENSCHIG00000012473) #25	DMWD (ENSCHIG00000023485) #26	DMPK (ENSCHIG00000015894) #27	SIX5 (ENSCHIG00000022800) #28	FBXO46 (ENSCHIG00000008535) #30	QPCTL (ENSCHIG00000027222) #31	ENSCHIG00000015755 #32	GIPR (ENSCHIG00000020718) #33	EML2 (ENSCHIG00000013582) #34	GPR4 (ENSCHIG00000005655) #35	ENSCHIG00000010098	OPA3 (ENSCHIG00000017112) #36	VASP (ENSCHIG00000012132) #37
Siberian musk deer	MODERN SPECIES	124	GNG8 (ENSMMSG00000002075)	PTGIR (ENSMMSG00000002087)	CALM3 (ENSMMSG00000002115)	ENSMMSG00000002162 ##7	ENSMMSG00000002170 ##7	PPP5C (ENSMMSG00000002194) #9	HIF3A (ENSMMSG00000002239) #10	ENSMMSG00000002309	IGFL1 (ENSMMSG00000002324) #11	PGLYRP1 (ENSMMSG00000002338) #17	CCDC61 (ENSMMSG00000002366) #18	NOVA2 (ENSMMSG00000002415) #19	NANOS2 (ENSMMSG00000002428) #20	ENSMMSG00000002435	MYPOP (ENSMMSG00000002452) #21	IRF2BP1 (ENSMMSG00000002468) #22	FOXA3 (ENSMMSG00000002476) #23	SYMPK (ENSMMSG00000002514) #24	RSPH6A (ENSMMSG00000002561) #25	DMWD (ENSMMSG00000002577) #26	DMPK (ENSMMSG00000002626) #27	SIX5 (ENSMMSG00000002869) #28	FBXO46 (ENSMMSG00000002912) #30	QPCTL (ENSMMSG00000002929) #31	ENSMMSG00000002952 #32	GIPR (ENSMMSG00000002994) #33	EML2 (ENSMMSG00000003108) #34	GPR4 (ENSMMSG00000003234) #35	OPA3 (ENSMMSG00000003240) #36	ENSMMSG00000003249	VASP (ENSMMSG00000003264) #37
Camelidae	ANCESTRAL SPECIES	15	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00990000210495	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Arabian camel	MODERN SPECIES	35	ENSCDRG00005012438	PTGIR (ENSCDRG00005012366)	CALM3 (ENSCDRG00005012287)	CCDC8 (ENSCDRG00005012268) ##7	PNMA8C (ENSCDRG00005012241) #7	PNMA8A (ENSCDRG00005012183) ##7	PPP5C (ENSCDRG00005011852) #9	HIF3A (ENSCDRG00005011604) #10	IGFL1 (ENSCDRG00005011529) #11	PGLYRP1 (ENSCDRG00005011474) #17	CCDC61 (ENSCDRG00005011347) #18	NOVA2 (ENSCDRG00005011316) #19	ENSCDRG00005011302 #20	ENSCDRG00005011280	MYPOP (ENSCDRG00005011260) #21	IRF2BP1 (ENSCDRG00005011195) #22	FOXA3 (ENSCDRG00005011166) #23	SYMPK (ENSCDRG00005011023) #24	RSPH6A (ENSCDRG00005010837) #25	DMWD (ENSCDRG00005010785) #26	DMPK (ENSCDRG00005010303) #27	ENSCDRG00005010261 #28	ENSCDRG00005010165	MEIOSIN (ENSCDRG00005010033) #29	FBXO46 (ENSCDRG00005010007) #30	QPCTL (ENSCDRG00005009916) #31	SNRPD2 (ENSCDRG00005009839) #32	GIPR (ENSCDRG00005009575) #33	EML2 (ENSCDRG00005008817) #34	GPR4 (ENSCDRG00005008750) #35	OPA3 (ENSCDRG00005008699) #36
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B #16	ENSGT00390000009557.C #11	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Carnivora	ANCESTRAL SPECIES	2	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Caniformia	ANCESTRAL SPECIES	1	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Ursidae	ANCESTRAL SPECIES	30	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000164310.e	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Ursus	ANCESTRAL SPECIES	13	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000164310.e	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Mustelinae	ANCESTRAL SPECIES	7	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Ferret	MODERN SPECIES	291	PRKD2 (ENSMPUG00000005234)	ENSMPUG00000005246	GNG8 (ENSMPUG00000005250)	PTGIR (ENSMPUG00000005257)	CALM3 (ENSMPUG00000005261)	CCDC8 (ENSMPUG00000019370) ##7	PNMA8A (ENSMPUG00000005271) ##7	PPP5C (ENSMPUG00000005275) #9	HIF3A (ENSMPUG00000005285) #10	ENSMPUG00000005385 #16	PGLYRP1 (ENSMPUG00000005395) #17	CCDC61 (ENSMPUG00000005428) #18	NOVA2 (ENSMPUG00000005444) #19	NANOS2 (ENSMPUG00000019371) #20	MYPOP (ENSMPUG00000005494) #21	IRF2BP1 (ENSMPUG00000019372) #22	FOXA3 (ENSMPUG00000005501) #23	SYMPK (ENSMPUG00000005505) #24	RSPH6A (ENSMPUG00000005534) #25	DMWD (ENSMPUG00000005593) #26	DMPK (ENSMPUG00000005629) #27	SIX5 (ENSMPUG00000005715) #28	MEIOSIN (ENSMPUG00000005720) #29	FBXO46 (ENSMPUG00000019374) #30	QPCTL (ENSMPUG00000005727) #31	SNRPD2 (ENSMPUG00000005733) #32	GIPR (ENSMPUG00000005756) #33	EML2 (ENSMPUG00000005855) #34	OPA3 (ENSMPUG00000005872) #36	VASP (ENSMPUG00000005880) #37	PPM1N (ENSMPUG00000005895)
American mink	MODERN SPECIES	135	CALM3 (ENSNVIG00000009664)	ENSNVIG00000009652 ##7	CCDC8 (ENSNVIG00000009649) ##7	C9JTH8 (ENSNVIG00000009647) #7	PNMA8A (ENSNVIG00000009641) ##7	PPP5C (ENSNVIG00000009605) #9	HIF3A (ENSNVIG00000009557) #10	ENSNVIG00000009514 #16	ENSNVIG00000009504 #16	PGLYRP1 (ENSNVIG00000009479) #17	CCDC61 (ENSNVIG00000009441) #18	NOVA2 (ENSNVIG00000009425) #19	NANOS2 (ENSNVIG00000009419) #20	ENSNVIG00000009418	MYPOP (ENSNVIG00000009413) #21	IRF2BP1 (ENSNVIG00000009402) #22	FOXA3 (ENSNVIG00000009388) #23	SYMPK (ENSNVIG00000009342) #24	RSPH6A (ENSNVIG00000009330) #25	DMWD (ENSNVIG00000009289) #26	DMPK (ENSNVIG00000009169) #27	SIX5 (ENSNVIG00000009150) #28	MEIOSIN (ENSNVIG00000009144) #29	FBXO46 (ENSNVIG00000009137) #30	QPCTL (ENSNVIG00000009114) #31	SNRPD2 (ENSNVIG00000009077) #32	GIPR (ENSNVIG00000009001) #33	EML2 (ENSNVIG00000008942) #34	GPR4 (ENSNVIG00000008931) #35	OPA3 (ENSNVIG00000008924) #36	VASP (ENSNVIG00000008886) #37
Canidae	ANCESTRAL SPECIES	5	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Canis_lupus	ANCESTRAL SPECIES		ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Dog	MODERN SPECIES		ENSCAFG00845003424	DACT3 (ENSCAFG00845003449)	GNG8 (ENSCAFG00845003458)	ENSCAFG00845004281	ENSCAFG00845004289 ##7	ENSCAFG00845004294 #7	ENSCAFG00845004299 ##7	ENSCAFG00845004375 #9	HIF3A (ENSCAFG00845004467) #10	ENSCAFG00845004529 #16	ENSCAFG00845004536	PGLYRP1 (ENSCAFG00845004551) #17	CCDC61 (ENSCAFG00845004579) #18	NOVA2 (ENSCAFG00845004618) #19	NANOS2 (ENSCAFG00845004625) #20	IRF2BP1 (ENSCAFG00845004633) #22	FOXA3 (ENSCAFG00845004638) #23	SYMPK (ENSCAFG00845004681) #24	DMWD (ENSCAFG00845004767) #26	DMPK (ENSCAFG00845004793) #27	SIX5 (ENSCAFG00845004815) #28	MEIOSIN (ENSCAFG00845004838) #29	FBXO46 (ENSCAFG00845004849) #30	QPCTL (ENSCAFG00845004866) #31	GIPR (ENSCAFG00845004894) #33	EML2 (ENSCAFG00845004953) #34	GPR4 (ENSCAFG00845005035) #35	OPA3 (ENSCAFG00845005041) #36	VASP (ENSCAFG00845005094) #37	PPM1N (ENSCAFG00845005133)	RTN2 (ENSCAFG00845005157)
Dingo	MODERN SPECIES	125	PTGIR (ENSCAFG00020001637)	ENSCAFG00020001643	CCDC8 (ENSCAFG00020001658) ##7	PNMA8C (ENSCAFG00020001664) #7	PNMA8A (ENSCAFG00020001670) ##7	PPP5C (ENSCAFG00020001676) #9	HIF3A (ENSCAFG00020001684) #10	ENSCAFG00020001697	ENSCAFG00020001734 #16	PGLYRP1 (ENSCAFG00020001739) #17	CCDC61 (ENSCAFG00020001761) #18	NOVA2 (ENSCAFG00020001763) #19	NANOS2 (ENSCAFG00020001772) #20	ENSCAFG00020001778	MYPOP (ENSCAFG00020001794) #21	IRF2BP1 (ENSCAFG00020001798) #22	FOXA3 (ENSCAFG00020001802) #23	SYMPK (ENSCAFG00020001815) #24	RSPH6A (ENSCAFG00020001834) #25	DMWD (ENSCAFG00020001886) #26	DMPK (ENSCAFG00020002021) #27	SIX5 (ENSCAFG00020003514) #28	MEIOSIN (ENSCAFG00020003516) #29	FBXO46 (ENSCAFG00020003524) #30	QPCTL (ENSCAFG00020003527) #31	ENSCAFG00020003532 #32	GIPR (ENSCAFG00020003543) #33	EML2 (ENSCAFG00020003779) #34	GPR4 (ENSCAFG00020011193) #35	OPA3 (ENSCAFG00020011195) #36	ENSCAFG00020011202 #37
Red fox	MODERN SPECIES	101	GNG8 (ENSVVUG00000002757)	PTGIR (ENSVVUG00000002758)	CALM1 (ENSVVUG00000002762)	CCDC8 (ENSVVUG00000002765) ##7	PNMA8C (ENSVVUG00000002766) #7	PNMA8A (ENSVVUG00000002767) ##7	PPP5C (ENSVVUG00000002773) #9	HIF3A (ENSVVUG00000002779) #10	ENSVVUG00000002866 #16	PGLYRP1 (ENSVVUG00000002874) #17	CCDC61 (ENSVVUG00000002894) #18	ENSVVUG00000002971 #19	NANOS2 (ENSVVUG00000002993) #20	ENSVVUG00000002998	MYPOP (ENSVVUG00000003001) #21	IRF2BP1 (ENSVVUG00000003011) #22	FOXA3 (ENSVVUG00000003017) #23	SYMPK (ENSVVUG00000003024) #24	RSPH6A (ENSVVUG00000003045) #25	DMWD (ENSVVUG00000003082) #26	DMPK (ENSVVUG00000003094) #27	SIX5 (ENSVVUG00000003131) #28	MEIOSIN (ENSVVUG00000003147) #29	FBXO46 (ENSVVUG00000003160) #30	QPCTL (ENSVVUG00000003169) #31	ENSVVUG00000003181 #32	GIPR (ENSVVUG00000003197) #33	EML2 (ENSVVUG00000003317) #34	GPR4 (ENSVVUG00000004011) #35	OPA3 (ENSVVUG00000004015) #36	ENSVVUG00000004018 #36
Felidae	ANCESTRAL SPECIES	7	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Panthera	ANCESTRAL SPECIES	20	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Panthera_a	ANCESTRAL SPECIES	22	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37	ENSGT00940000162694
lion	MODERN SPECIES	15	DACT3 (ENSPLOG00000005799)	GNG8 (ENSPLOG00000005773)	PTGIR (ENSPLOG00000005755)	CALM3 (ENSPLOG00000005689)	PNMA8C (ENSPLOG00000005649) #7	PNMA8A (ENSPLOG00000005626) ##7	PPP5C (ENSPLOG00000005583) #9	HIF3A (ENSPLOG00000005534) #10	ENSPLOG00000005466 #16	ENSPLOG00000021927 #16	PGLYRP1 (ENSPLOG00000021909) #17	CCDC61 (ENSPLOG00000021860) #18	NOVA2 (ENSPLOG00000021834) #19	NANOS2 (ENSPLOG00000021823) #20	MYPOP (ENSPLOG00000021806) #21	IRF2BP1 (ENSPLOG00000021798) #22	FOXA3 (ENSPLOG00000021787) #23	SYMPK (ENSPLOG00000021677) #24	RSPH6A (ENSPLOG00000021574) #25	DMWD (ENSPLOG00000021521) #26	DMPK (ENSPLOG00000021360) #27	ENSPLOG00000021304	FBXO46 (ENSPLOG00000021240) #30	QPCTL (ENSPLOG00000021202) #31	SNRPD2 (ENSPLOG00000021167) #32	GIPR (ENSPLOG00000020929) #33	EML2 (ENSPLOG00000020666) #34	GPR4 (ENSPLOG00000020587) #35	OPA3 (ENSPLOG00000020572) #36	VASP (ENSPLOG00000020525) #37	PPM1N (ENSPLOG00000020494)
Tiger	MODERN SPECIES	494									PPP5C (ENSPTIG00000015154) #9	HIF3A (ENSPTIG00000015179) #10	ENSPTIG00000015297 #16	ENSPTIG00000015313 #16	CCDC61 (ENSPTIG00000015320) #18	NOVA2 (ENSPTIG00000015368) #19	NANOS2 (ENSPTIG00000015372) #20	ENSPTIG00000007993 #22	SYMPK (ENSPTIG00000015420) #24	RSPH6A (ENSPTIG00000015641) #25	DMPK (ENSPTIG00000015873) #27	ENSPTIG00000016086 #28	MEIOSIN (ENSPTIG00000016102) #29
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Chiroptera	ANCESTRAL SPECIES	16	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Greater horseshoe bat	MODERN SPECIES	6	CALM3 (ENSRFEG00010011490)	PNMA8B (ENSRFEG00010011467) ##7	PNMA8C (ENSRFEG00010011452) #7	PPP5C (ENSRFEG00010011335) #9	HIF3A (ENSRFEG00010010703) #10	IGFL1 (ENSRFEG00010010615) #11	ENSRFEG00010010556 #16	ENSRFEG00010010514 #16	IGFL4 (ENSRFEG00010010411) #16	PGLYRP1 (ENSRFEG00010010376) #17	CCDC61 (ENSRFEG00010010279) #18	NOVA2 (ENSRFEG00010010242) #19	NANOS2 (ENSRFEG00010010225) #20	ENSRFEG00010010211	MYPOP (ENSRFEG00010010173) #21	IRF2BP1 (ENSRFEG00010010157) #22	FOXA3 (ENSRFEG00010010122) #23	SYMPK (ENSRFEG00010010076) #24	RSPH6A (ENSRFEG00010009900) #25	DMWD (ENSRFEG00010009798) #26	DMPK (ENSRFEG00010009224) #27	SIX5 (ENSRFEG00010009093) #28	MEIOSIN (ENSRFEG00010009004) #29	QPCTL (ENSRFEG00010008930) #31	ENSRFEG00010008870 #32	GIPR (ENSRFEG00010008371) #33	EML2 (ENSRFEG00010007875) #34	GPR4 (ENSRFEG00010007847) #35	OPA3 (ENSRFEG00010007786) #36	VASP (ENSRFEG00010007608) #37	RTN2 (ENSRFEG00010007128)
Equus	ANCESTRAL SPECIES	1	ENSGT01030000234522.C.b.e.b.a.a.b #7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00940000161006.h #17	ENSGT00390000009557.C.j #11	ENSGT00390000009557.C.i.a #11	ENSGT01100000263517.b.d.m.a.a.a.b	ENSGT00390000009557.C.i.b #11	ENSGT00940000161006.g #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Donkey	MODERN SPECIES	18	ENSEASG00005024649 ##7	CCDC8 (ENSEASG00005031475) ##7	PNMA8C (ENSEASG00005004006) #7	PPP5C (ENSEASG00005003995) #9	HIF3A (ENSEASG00005003993) #10	ENSEASG00005029977 #17	ENSEASG00005032964 #11	ENSEASG00005003990	ENSEASG00005003991 #11	ENSEASG00005025557 #17	CCDC61 (ENSEASG00005027854) #18	NOVA2 (ENSEASG00005038406) #19	NANOS2 (ENSEASG00005014235) #20	ENSEASG00005014234	MYPOP (ENSEASG00005028554) #21	IRF2BP1 (ENSEASG00005014232) #22	FOXA3 (ENSEASG00005037896) #23	SYMPK (ENSEASG00005014227) #24	RSPH6A (ENSEASG00005014225) #25	DMWD (ENSEASG00005014223) #26	DMPK (ENSEASG00005014220) #27	SIX5 (ENSEASG00005014218) #28	MEIOSIN (ENSEASG00005014215) #29	FBXO46 (ENSEASG00005029424) #30	QPCTL (ENSEASG00005014212) #31	ENSEASG00005014210 #32	GIPR (ENSEASG00005014208) #33	EML2 (ENSEASG00005014204) #34	GPR4 (ENSEASG00005028869) #35	ENSEASG00005028592 #36	VASP (ENSEASG00005014200) #37
Horse	MODERN SPECIES	1	PNMA8A (ENSECAG00000006115) ##7	PNMA8C (ENSECAG00000034552) #7	CCDC8 (ENSECAG00000056835) ##7	PPP5C (ENSECAG00000056298) #9	HIF3A (ENSECAG00000020693) #10	ENSECAG00000012503 #11	ENSECAG00000016992 #11	ENSECAG00000012514	ENSECAG00000029300 #11	ENSECAG00000039739 #17	ENSECAG00000032321 #17	CCDC61 (ENSECAG00000009015) #18	NOVA2 (ENSECAG00000024041) #19	ENSECAG00000054420	NANOS2 (ENSECAG00000006033) #20	IRF2BP1 (ENSECAG00000005987) #22	FOXA3 (ENSECAG00000005936) #23	SYMPK (ENSECAG00000008163) #24	RSPH6A (ENSECAG00000019005) #25	DMPK (ENSECAG00000016750) #27	MEIOSIN (ENSECAG00000036481) #29	FBXO46 (ENSECAG00000032958) #30	QPCTL (ENSECAG00000009265) #31	SNRPD2 (ENSECAG00000007824) #32	GIPR (ENSECAG00000015923) #33	EML2 (ENSECAG00000018032) #34	GPR4 (ENSECAG00000045714) #35	OPA3 (ENSECAG00000014284) #36	VASP (ENSECAG00000007818) #37	PPM1N (ENSECAG00000005419)	RTN2 (ENSECAG00000022897)
Atlantogenata	ANCESTRAL SPECIES	48	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a ##7	ENSGT01030000234522.C.b.f.a ##7	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT00390000009557.C #11	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Xenarthra	ANCESTRAL SPECIES	122											ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37	ENSGT00940000160599
Marsupialia	ANCESTRAL SPECIES	20	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Diprotodontia	ANCESTRAL SPECIES	58	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Diprotodontia_a	ANCESTRAL SPECIES	56	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #9	ENSGT00940000161745 #10	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
koala	MODERN SPECIES	398									ENSPCIG00000009953	ENSPCIG00000022769 #17	CCDC61 (ENSPCIG00000032572) #18	NOVA2 (ENSPCIG00000007632) #19	ENSPCIG00000007637 #20	ENSPCIG00000036648 #21	ENSPCIG00000007640	IRF2BP1 (ENSPCIG00000007642) #22	FOXA3 (ENSPCIG00000007644) #23	SYMPK (ENSPCIG00000024476) #24	RSPH6A (ENSPCIG00000024486) #25	DMWD (ENSPCIG00000022992) #26	DMPK (ENSPCIG00000022991) #27	SIX5 (ENSPCIG00000022990) #28	ENSPCIG00000022989 #29	FBXO46 (ENSPCIG00000022988) #30	QPCTL (ENSPCIG00000022987) #31	SNRPD2 (ENSPCIG00000022986) #32	GIPR (ENSPCIG00000022980) #33	EML2 (ENSPCIG00000022971) #34	GPR4 (ENSPCIG00000022968) #35	OPA3 (ENSPCIG00000037324) #36	VASP (ENSPCIG00000022959) #37
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1158	ENSVURG00010021686	ENSVURG00010021679	ENSVURG00010021676	ENSVURG00010021665	ENSVURG00010021653 #9	ENSVURG00010021638 #10	ENSVURG00010021566	ENSVURG00010021545	ENSVURG00010021540	ENSVURG00010021538 #17	ENSVURG00010021533	ENSVURG00010021526 #18	ENSVURG00010021522 #19	ENSVURG00010021516 #20	ENSVURG00010021512 #21	ENSVURG00010021509 #22	ENSVURG00010021505 #23	ENSVURG00010021491 #24	ENSVURG00010021485 #25	ENSVURG00010021481 #26	ENSVURG00010021471 #27	ENSVURG00010021465 #28	ENSVURG00010021462 #30	ENSVURG00010021459 #31	ENSVURG00010021455 #32	ENSVURG00010021450 #33	ENSVURG00010021446	ENSVURG00010021438 #34	ENSVURG00010021437 #35	ENSVURG00010021434 #36	ENSVURG00010021427 #37
Common wonbat	MODERN SPECIES	1158	ENSVURG00010006016	ENSVURG00010005880	ENSVURG00010005864	ENSVURG00010005861	ENSVURG00010005854	ENSVURG00010004809 #9	ENSVURG00010004727 #10	ENSVURG00010004291	ENSVURG00010004245	ENSVURG00010004241	ENSVURG00010004231 #17	ENSVURG00010004226 #18	ENSVURG00010004223 #19	ENSVURG00010004212 #20	ENSVURG00010004210 #21	ENSVURG00010004203 #22	ENSVURG00010004196 #23	ENSVURG00010004161 #24	ENSVURG00010004141 #25	ENSVURG00010004126 #26	ENSVURG00010004121 #27	ENSVURG00010004112 #28	ENSVURG00010004100 #30	ENSVURG00010004092 #31	ENSVURG00010004074 #32	ENSVURG00010004012 #33	ENSVURG00010003997	ENSVURG00010003972 #34	ENSVURG00010003964 #35	ENSVURG00010003961 #36	ENSVURG00010003948 #37
Opossum	MODERN SPECIES	3	ENSMODG00000047896	ENSMODG00000005770	ENSMODG00000005802	UTS2 (ENSMODG00000047454)	ENSMODG00000017706	ENSMODG00000020046	ENSMODG00000036417	ENSMODG00000038293	ENSMODG00000023670	ENSMODG00000021519	PGLYRP1 (ENSMODG00000021527) #17	ENSMODG00000021528 #18	ENSMODG00000050472 #19	NANOS2 (ENSMODG00000048699) #20	MYPOP (ENSMODG00000021531) #21	IRF2BP1 (ENSMODG00000021532) #22	FOXA3 (ENSMODG00000021533) #23	SYMPK (ENSMODG00000021534) #24	ENSMODG00000021535 #27	SIX5 (ENSMODG00000041693) #28	ENSMODG00000045504 #29	FBXO46 (ENSMODG00000028665) #30	QPCTL (ENSMODG00000021538) #31	SNRPD2 (ENSMODG00000021539) #32	GIPR (ENSMODG00000021540) #33	ENSMODG00000044027	EML2 (ENSMODG00000021541) #34	GPR4 (ENSMODG00000023661) #35	OPA3 (ENSMODG00000021542) #36	RTN2 (ENSMODG00000021544)	FOSB (ENSMODG00000021545)
Sauria	ANCESTRAL SPECIES	54											ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745 #10	ENSGT00940000158785 #9	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Archelosauria	ANCESTRAL SPECIES	33	ENSGT01090000261113	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765 #37	ENSGT00390000009795 #36	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000153887.B #34	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745 #10	ENSGT00940000158785 #9	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Cryptodira	ANCESTRAL SPECIES	35	ENSGT00390000009795 #36	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000153887.B #34	ENSGT00390000010750.b	ENSGT00390000000190	ENSGT00940000156783	ENSGT00940000157969	ENSGT00940000161850	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745 #10	ENSGT00940000158785 #9	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Testudinoidea	ANCESTRAL SPECIES	30	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765 #37	ENSGT00390000009795 #36	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000153887.B #34	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000161006.l.a #17	ENSGT00940000161006.l.b #17	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604.d	ENSGT00940000161745 #10	ENSGT00940000158785 #9	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Emydidae	ANCESTRAL SPECIES	77	ENSGT00940000163913	ENSGT00940000160551	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000153887.B #34	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000161006.l.a.b #17	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203
painted turtle	MODERN SPECIES	1590														ENSCPBG00000004872	MYPOP (ENSCPBG00000004878) #21	IRF2BP1 (ENSCPBG00000004882) #22	ENSCPBG00000004894
Three-toed box turtle	MODERN SPECIES	252	ENSTMTG00000006897	CKM (ENSTMTG00000006864)	ENSTMTG00000006854	ENSTMTG00000006830	EXOC3L2 (ENSTMTG00000006808)	ENSTMTG00000006798	FOSB (ENSTMTG00000006785)	ENSTMTG00000006752	EML2 (ENSTMTG00000003755) #34	ENSTMTG00000003421	ENSTMTG00000003409 #30	QPCTL (ENSTMTG00000003398) #31	ENSTMTG00000003368	NOVA2 (ENSTMTG00000003357) #19	MYPOP (ENSTMTG00000003346) #21	IRF2BP1 (ENSTMTG00000003331) #22	ENSTMTG00000008031	SYMPK (ENSTMTG00000007982) #24	DMWD (ENSTMTG00000007911) #26	ENSTMTG00000007894	ENSTMTG00000007873	SNRPD2 (ENSTMTG00000007862) #32	ENSTMTG00000007849	HIF3A (ENSTMTG00000007833) #10	PPP5C (ENSTMTG00000007809) #9	PTGIR (ENSTMTG00000007799)	GNG8 (ENSTMTG00000007787)	ENSTMTG00000007764	ENSTMTG00000007750	PRKD2 (ENSTMTG00000007272)	STRN4 (ENSTMTG00000006957)
Testudinidae	ANCESTRAL SPECIES	36	ENSGT00940000156070.b	ENSGT00940000156765 #37	ENSGT00390000009795 #36	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000153887.B #34	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000161006.l.a #17	ENSGT00940000162008	ENSGT00940000161006.l.b #17	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000180177	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604.d	ENSGT00940000161745 #10	ENSGT00940000158785 #9	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d
Goode s thornscrub tortoise	MODERN SPECIES	134	OPA3 (ENSGEVG00005014359) #36	GPR4 (ENSGEVG00005014339) #35	EML2 (ENSGEVG00005010764) #34	ENSGEVG00005009904	ENSGEVG00005009827	FBXO46 (ENSGEVG00005009811) #30	QPCTL (ENSGEVG00005009703) #31	ENSGEVG00005009649 #17	PRLHR (ENSGEVG00005009601)	ENSGEVG00005009560 #17	ENSGEVG00005009334 #17	CCDC61 (ENSGEVG00005009259) #18	ENSGEVG00005009198 #20	NOVA2 (ENSGEVG00005009144) #19	MYPOP (ENSGEVG00005009011) #21	IRF2BP1 (ENSGEVG00005008960) #22	ENSGEVG00005008917	ENSGEVG00005008883	ENSGEVG00005008841	SYMPK (ENSGEVG00005008656) #24	DMWD (ENSGEVG00005008598) #26	DMPK (ENSGEVG00005008534) #27	ENSGEVG00005008510	ENSGEVG00005008491 #28	ENSGEVG00005008479	ENSGEVG00005008454	ENSGEVG00005008436	SNRPD2 (ENSGEVG00005008411) #32	ENSGEVG00005008379	ENSGEVG00005008365 #10	PPP5C (ENSGEVG00005007903) #9
Archosauria	ANCESTRAL SPECIES	95														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000161745 #10	ENSGT00940000158785 #9
Aves	ANCESTRAL SPECIES	106														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26
Neognathae	ANCESTRAL SPECIES	80														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26
Neognathae_b	ANCESTRAL SPECIES	73														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26
Neognathae_c	ANCESTRAL SPECIES	78														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES	40	ENSACCG00020016515	ENSACCG00020016521	ENSACCG00020016525	PPP1R13L (ENSACCG00020016527)	ERCC1 (ENSACCG00020016529)	CLPTM1 (ENSACCG00020016534)	RELB (ENSACCG00020016544)	ENSACCG00020016555	ENSACCG00020016566	ENSACCG00020016572	PPP1R37 (ENSACCG00020016579)	NKPD1 (ENSACCG00020016583)	ENSACCG00020016587	CCDC61 (ENSACCG00020016594) #18	ENSACCG00020016598 #19	ENSACCG00020016599 #22	ENSACCG00020016608 #24
Golden eagle	MODERN SPECIES	51														ENSACCG00020016847	ENSACCG00020016849 #19	ENSACCG00020016852 #22	ENSACCG00020016857 #24	DMWD (ENSACCG00020016869) #26	ENSACCG00020016875	ENSACCG00020011868	ENSACCG00020011899 #10	ENSACCG00020011955 #9	ENSACCG00020012007	ENSACCG00020012046
Lepidosauria	ANCESTRAL SPECIES	58											ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745 #10	ENSGT00940000158785 #9	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Episquamata	ANCESTRAL SPECIES	7	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745.d #10	ENSGT00940000158785 #9	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d
Laterata	ANCESTRAL SPECIES	17	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00940000158292.a.e	ENSGT00570000080851 #29	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745.d #10	ENSGT00940000158785 #9	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d
Common wall lizard	MODERN SPECIES	16	SIRT2 (ENSPMRG00000012202)	NFKBIB (ENSPMRG00000012209)	ENSPMRG00000012216	ENSPMRG00000012225	ENSPMRG00000012284	ENSPMRG00000012287	ENSPMRG00000012296	ENSPMRG00000012318	FBXO46 (ENSPMRG00000012326) #30	QPCTL (ENSPMRG00000012336) #31	CCDC61 (ENSPMRG00000012345) #18	NANOS2 (ENSPMRG00000012351) #20	NOVA2 (ENSPMRG00000008480) #19	ENSPMRG00000008493	MYPOP (ENSPMRG00000008500) #21	IRF2BP1 (ENSPMRG00000008505) #22	ENSPMRG00000008509	SYMPK (ENSPMRG00000008517) #24	DMWD (ENSPMRG00000008538) #26	ENSPMRG00000008551 #27	ENSPMRG00000008574 #28	ENSPMRG00000008581	ENSPMRG00000008593 #29	ENSPMRG00000008612	ENSPMRG00000008617 #32	ENSPMRG00000008624	ENSPMRG00000008628	HIF3A (ENSPMRG00000008634) #10	PPP5C (ENSPMRG00000008661) #9	ENSPMRG00000008686	CALM3 (ENSPMRG00000008690)
Argentine black and white tegu	MODERN SPECIES	59	HNRNPL (ENSSMRG00000015085)	ENSSMRG00000015086	ENSSMRG00000015087	ENSSMRG00000015246	SIRT2 (ENSSMRG00000015247)	NFKBIB (ENSSMRG00000015249)	ENSSMRG00000015251	SARS2 (ENSSMRG00000015252)	ENSSMRG00000015255	FBXO46 (ENSSMRG00000015257) #30	QPCTL (ENSSMRG00000015258) #31	CCDC61 (ENSSMRG00000015259) #18	NANOS2 (ENSSMRG00000015261) #20	NOVA2 (ENSSMRG00000015264) #19	MYPOP (ENSSMRG00000015265) #21	IRF2BP1 (ENSSMRG00000015268) #22	ENSSMRG00000015300	SYMPK (ENSSMRG00000015301) #24	DMWD (ENSSMRG00000015307) #26	DMPK (ENSSMRG00000015308) #27	SIX5 (ENSSMRG00000015310) #28	ENSSMRG00000015311	ENSSMRG00000015316	SNRPD2 (ENSSMRG00000015318) #32	ENSSMRG00000015320	HIF3A (ENSSMRG00000015322) #10	PPP5C (ENSSMRG00000015324) #9	ENSSMRG00000015326	CALM3 (ENSSMRG00000015327)	PTGIR (ENSSMRG00000015328)	GNG8 (ENSSMRG00000015330)
Toxicofera	ANCESTRAL SPECIES	22	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT00570000080851 #29	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000161745.c #10	ENSGT00940000161745.d #10	ENSGT00940000158785 #9	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d
Elapidae	ANCESTRAL SPECIES	9	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237.b #28	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT00570000080851 #29	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000161745.d #10	ENSGT00940000158785 #9	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Indian cobra	MODERN SPECIES	11	ENSNNAG00000015721	HNRNPL (ENSNNAG00000015748)	ENSNNAG00000015799	ENSNNAG00000015826	ENSNNAG00000015848	SIRT2 (ENSNNAG00000015878)	NFKBIB (ENSNNAG00000016134)	SARS2 (ENSNNAG00000016160)	ENSNNAG00000016340	FBXO46 (ENSNNAG00000016374) #30	QPCTL (ENSNNAG00000016428) #31	ENSNNAG00000016438 #18	NOVA2 (ENSNNAG00000016444) #19	ENSNNAG00000016452	MYPOP (ENSNNAG00000016459) #21	IRF2BP1 (ENSNNAG00000016466) #22	ENSNNAG00000016474	ENSNNAG00000016484 #24	DMWD (ENSNNAG00000016502) #26	DMPK (ENSNNAG00000016522) #27	ENSNNAG00000016566 #24	ENSNNAG00000016585 #28	ENSNNAG00000016590	ENSNNAG00000016595	ENSNNAG00000016598	SNRPD2 (ENSNNAG00000016603) #32	HIF3A (ENSNNAG00000016614) #10	PPP5C (ENSNNAG00000016638) #9	CALM3 (ENSNNAG00000016648)	PTGIR (ENSNNAG00000016669)	GNG8 (ENSNNAG00000016675)
Elapidae_a	ANCESTRAL SPECIES	33	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237.b #28	ENSGT00940000180177	ENSGT00940000162237.a #28	ENSGT00570000080851 #29	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000161745.d #10	ENSGT00940000158785 #9	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Acanthophiinae	ANCESTRAL SPECIES	32	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000180177	ENSGT00940000162237.a #28	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000161745.d #10	ENSGT00940000158785 #9	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D	ENSGT00950000183181.B.b	ENSGT00960000193250	ENSGT00950000183024.a.b.b
Mainland tiger snake	MODERN SPECIES	559												QPCTL (ENSNSUG00000017401) #31	NANOS2 (ENSNSUG00000017398) #20	NOVA2 (ENSNSUG00000017397) #19	MYPOP (ENSNSUG00000017396) #21	IRF2BP1 (ENSNSUG00000017394) #22	ENSNSUG00000017393	SYMPK (ENSNSUG00000017317) #24
Eastern brown snake	MODERN SPECIES	77	ENSPTXG00000012361	ECH1 (ENSPTXG00000012357)	HNRNPL (ENSPTXG00000012356)	ENSPTXG00000017255	ENSPTXG00000017251	ENSPTXG00000017244	SIRT2 (ENSPTXG00000017240)	NFKBIB (ENSPTXG00000017236)	SARS2 (ENSPTXG00000017130)	ENSPTXG00000017124	FBXO46 (ENSPTXG00000017123) #30	QPCTL (ENSPTXG00000016820) #31	CCDC61 (ENSPTXG00000016815) #18	NOVA2 (ENSPTXG00000016809) #19	MYPOP (ENSPTXG00000016806) #21	IRF2BP1 (ENSPTXG00000016804) #22	ENSPTXG00000016802	SYMPK (ENSPTXG00000016761) #24	DMWD (ENSPTXG00000016737) #26	ENSPTXG00000016734	SIX5 (ENSPTXG00000016732) #28	ENSPTXG00000016729	ENSPTXG00000016727	SNRPD2 (ENSPTXG00000016725) #32	HIF3A (ENSPTXG00000016722) #10	PPP5C (ENSPTXG00000016719) #9	ENSPTXG00000016715	CALM3 (ENSPTXG00000016713)	PTGIR (ENSPTXG00000016711)	GNG8 (ENSPTXG00000016708)	PRKD2 (ENSPTXG00000016695)
Lizard	MODERN SPECIES	1606															ENSACAG00000036436 #21	ENSACAG00000007842 #22	ENSACAG00000007869