Euteleostomi	ANCESTRAL SPECIES	879															ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00940000166203
Sarcopterygii	ANCESTRAL SPECIES	678																ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25
Tetrapoda	ANCESTRAL SPECIES	430																ENSGT00940000162120 #22	ENSGT00940000166203
Amniota	ANCESTRAL SPECIES	123											ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25
Mammalia	ANCESTRAL SPECIES	75	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000171396	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00390000017608 #32	ENSGT00390000003107.b #31	ENSGT00530000064222.a #30	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37	ENSGT00940000160599
Theria	ANCESTRAL SPECIES	27	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Eutheria	ANCESTRAL SPECIES	29	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Primates	ANCESTRAL SPECIES	15	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Simiiformes	ANCESTRAL SPECIES	16	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Catarrhini	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.b #15	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Hominoidea	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.b #15	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Hominidae	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.b #15	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Orangutan	MODERN SPECIES	10	PNMA8A (ENSPPYG00000035419) #7	PNMA8C (ENSPPYG00000037781) #8	CCDC8 (ENSPPYG00000010150) #9	PPP5C (ENSPPYG00000010148) #10	HIF3A (ENSPPYG00000010147) #11	IGFL1 (ENSPPYG00000040323) #12	ENSPPYG00000040668 #13	IGFL3 (ENSPPYG00000010144) #14	ENSPPYG00000029912 #15	IGFL4 (ENSPPYG00000010142) #16	PGLYRP1 (ENSPPYG00000010141) #17	CCDC61 (ENSPPYG00000010140) #18	NOVA2 (ENSPPYG00000010139) #19	NANOS2 (ENSPPYG00000010138) #20	ENSPPYG00000031914 #21	IRF2BP1 (ENSPPYG00000010136) #22	FOXA3 (ENSPPYG00000010580) #23	SYMPK (ENSPPYG00000010135) #24	RSPH6A (ENSPPYG00000010134) #25	DMWD (ENSPPYG00000010133) #26	DMPK (ENSPPYG00000010132) #27	SIX5 (ENSPPYG00000010131) #28	MEIOSIN (ENSPPYG00000036674) #29	FBXO46 (ENSPPYG00000041185) #30	QPCTL (ENSPPYG00000010130) #31	ENSPPYG00000010129 #32	GIPR (ENSPPYG00000010128) #33	ENSPPYG00000010127 #34	GPR4 (ENSPPYG00000010126) #35	ENSPPYG00000032022 #36	VASP (ENSPPYG00000010124) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785.j #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.b #15	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Gorilla	MODERN SPECIES	10	PNMA8A (ENSGGOG00000001214) #7	PNMA8C (ENSGGOG00000040172) #8	CCDC8 (ENSGGOG00000016630) #9	PPP5C (ENSGGOG00000007562) #10	HIF3A (ENSGGOG00000007551) #11	IGFL1 (ENSGGOG00000011461) #12	IGFL2 (ENSGGOG00000024074) #15	ENSGGOG00000028458 #13	IGFL3 (ENSGGOG00000005560) #14	IGFL4 (ENSGGOG00000027623) #16	PGLYRP1 (ENSGGOG00000011126) #17	ENSGGOG00000011115 #18	NOVA2 (ENSGGOG00000000325) #19	NANOS2 (ENSGGOG00000013447) #20	MYPOP (ENSGGOG00000017080) #21	IRF2BP1 (ENSGGOG00000023972) #22	FOXA3 (ENSGGOG00000003972) #23	SYMPK (ENSGGOG00000003410) #24	RSPH6A (ENSGGOG00000003405) #25	DMWD (ENSGGOG00000007982) #26	DMPK (ENSGGOG00000007967) #27	SIX5 (ENSGGOG00000007958) #28	BHMG1 (ENSGGOG00000036840) #29	FBXO46 (ENSGGOG00000027287) #30	QPCTL (ENSGGOG00000002353) #31	SNRPD2 (ENSGGOG00000002350) #32	GIPR (ENSGGOG00000016144) #33	ENSGGOG00000015482 #34	GPR4 (ENSGGOG00000043968) #35	ENSGGOG00000009890 #36	VASP (ENSGGOG00000009879) #37
Homo/Pan group	ANCESTRAL SPECIES		ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785.j #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.b #15	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Pan	ANCESTRAL SPECIES	9	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785.j #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.b #15	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Chimpanzee	MODERN SPECIES	10	PNMA8A (ENSPTRG00000011183) #7	PNMA8C (ENSPTRG00000048654) #8	CCDC8 (ENSPTRG00000011182) #9	PPP5C (ENSPTRG00000011181) #10	HIF3A (ENSPTRG00000011180) #11	IGFL1 (ENSPTRG00000011179) #12	IGFL2 (ENSPTRG00000041643) #15	ENSPTRG00000050670 #13	IGFL3 (ENSPTRG00000011176) #14	IGFL4 (ENSPTRG00000051124) #16	PGLYRP1 (ENSPTRG00000011175) #17	CCDC61 (ENSPTRG00000039834) #18	NOVA2 (ENSPTRG00000011173) #19	NANOS2 (ENSPTRG00000011172) #20	MYPOP (ENSPTRG00000028972) #21	IRF2BP1 (ENSPTRG00000011171) #22	FOXA3 (ENSPTRG00000011170) #23	SYMPK (ENSPTRG00000011169) #24	RSPH6A (ENSPTRG00000011168) #25	DMWD (ENSPTRG00000011165) #26	DMPK (ENSPTRG00000011166) #27	SIX5 (ENSPTRG00000033681) #28	MEIOSIN (ENSPTRG00000041781) #29	FBXO46 (ENSPTRG00000038848) #30	QPCTL (ENSPTRG00000011163) #31	SNRPD2 (ENSPTRG00000011162) #32	GIPR (ENSPTRG00000050104) #33	ENSPTRG00000048889 #34	GPR4 (ENSPTRG00000051128) #35	OPA3 (ENSPTRG00000045719) #36	VASP (ENSPTRG00000046601) #37
Human	MODERN SPECIES	10	PNMA8B (ENSG00000204851) ##7	PNMA8A (ENSG00000182013) #7	PNMA8C (ENSG00000277531) #8	CCDC8 (ENSG00000169515) #9	PPP5C (ENSG00000011485) #10	HIF3A (ENSG00000124440) #11	IGFL1 (ENSG00000188293) #12	IGFL2 (ENSG00000204866) #15	IGFL3 (ENSG00000188624) #14	IGFL4 (ENSG00000204869) #16	PGLYRP1 (ENSG00000008438) #17	CCDC61 (ENSG00000104983) #18	NOVA2 (ENSG00000104967) #19	NANOS2 (ENSG00000188425) #20	MYPOP (ENSG00000176182) #21	IRF2BP1 (ENSG00000170604) #22	FOXA3 (ENSG00000170608) #23	SYMPK (ENSG00000125755) #24	RSPH6A (ENSG00000104941) #25	DMWD (ENSG00000185800) #26	ENSG00000268434	DMPK (ENSG00000104936) #27	SIX5 (ENSG00000177045) #28	MEIOSIN (ENSG00000237452) #29	FBXO46 (ENSG00000177051) #30	QPCTL (ENSG00000011478) #31	SNRPD2 (ENSG00000125743) #32	GIPR (ENSG00000010310) #33	EML2 (ENSG00000125746) #34	GPR4 (ENSG00000177464) #35	OPA3 (ENSG00000125741) #36
Gibbon	MODERN SPECIES	7	PNMA8A (ENSNLEG00000002749) #7	PNMA8C (ENSNLEG00000030454) #8	ENSNLEG00000030898 #9	ENSNLEG00000002747 #9	PPP5C (ENSNLEG00000002629) #10	HIF3A (ENSNLEG00000002481) #11	IGFL1 (ENSNLEG00000002458) #12	ENSNLEG00000002443 #15	ENSNLEG00000032323 #13	IGFL3 (ENSNLEG00000002440) #14	IGFL4 (ENSNLEG00000002438) #16	PGLYRP1 (ENSNLEG00000002422) #17	CCDC61 (ENSNLEG00000002402) #18	ENSNLEG00000002399 #19	MYPOP (ENSNLEG00000002401) #21	IRF2BP1 (ENSNLEG00000018408) #22	FOXA3 (ENSNLEG00000002392) #23	SYMPK (ENSNLEG00000002369) #24	RSPH6A (ENSNLEG00000002328) #25	DMWD (ENSNLEG00000002321) #26	DMPK (ENSNLEG00000002298) #27	ENSNLEG00000002295 #28	MEIOSIN (ENSNLEG00000002294) #29	ENSNLEG00000031904	ENSNLEG00000002287 #31	SNRPD2 (ENSNLEG00000002274) #32	ENSNLEG00000002246 #34	GPR4 (ENSNLEG00000030194) #35	ENSNLEG00000002240 #36	VASP (ENSNLEG00000002237) #37	PPM1N (ENSNLEG00000002225)
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.b #15	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Macaca	ANCESTRAL SPECIES	12	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Pig-tailed macaque	MODERN SPECIES	551	PNMA8A (ENSMNEG00000028579) #7	PNMA8C (ENSMNEG00000013860) #8	CCDC8 (ENSMNEG00000035328) #9	ENSMNEG00000039917	PPP5C (ENSMNEG00000029801) #10	HIF3A (ENSMNEG00000038570) #11	IGFL1 (ENSMNEG00000040374) #12	IGFL3 (ENSMNEG00000044243) #14	ENSMNEG00000041271	ENSMNEG00000023075 #16	PGLYRP1 (ENSMNEG00000011734) #17	CCDC61 (ENSMNEG00000035233) #18	NOVA2 (ENSMNEG00000040253) #19	NANOS2 (ENSMNEG00000004633) #20	MYPOP (ENSMNEG00000031648) #21	IRF2BP1 (ENSMNEG00000017409) #22	FOXA3 (ENSMNEG00000040470) #23	SYMPK (ENSMNEG00000019439) #24	RSPH6A (ENSMNEG00000040843) #25	DMWD (ENSMNEG00000031944) #26	DMPK (ENSMNEG00000037335) #27	SIX5 (ENSMNEG00000032313) #28	MEIOSIN (ENSMNEG00000043184) #29	FBXO46 (ENSMNEG00000027865) #30	QPCTL (ENSMNEG00000035757) #31	ENSMNEG00000039787 #32	GIPR (ENSMNEG00000035353) #33	ENSMNEG00000042527 #34	GPR4 (ENSMNEG00000002892) #35	OPA3 (ENSMNEG00000040409) #36	VASP (ENSMNEG00000031417) #37
Macaca_a	ANCESTRAL SPECIES	1	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00390000015797.c.b	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.a #14	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00990000210495	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Crab-eating macaque	MODERN SPECIES	10	CALM3 (ENSMFAG00000036156)	ENSMFAG00000035539 ##7	PNMA8A (ENSMFAG00000006014) #7	PNMA8C (ENSMFAG00000029984) #8	CCDC8 (ENSMFAG00000041847) #9	ENSMFAG00000036651	PPP5C (ENSMFAG00000034179) #10	HIF3A (ENSMFAG00000025583) #11	ENSMFAG00000057751 #12	IGFL3 (ENSMFAG00000003659) #14	ENSMFAG00000001824 #16	PGLYRP1 (ENSMFAG00000032464) #17	CCDC61 (ENSMFAG00000035042) #18	NOVA2 (ENSMFAG00000043672) #19	NANOS2 (ENSMFAG00000017215) #20	IRF2BP1 (ENSMFAG00000061076) #22	FOXA3 (ENSMFAG00000040557) #23	SYMPK (ENSMFAG00000038558) #24	RSPH6A (ENSMFAG00000029233) #25	DMWD (ENSMFAG00000033696) #26	DMPK (ENSMFAG00000037913) #27	ENSMFAG00000054039	MEIOSIN (ENSMFAG00000038095) #29	FBXO46 (ENSMFAG00000004080) #30	QPCTL (ENSMFAG00000009032) #31	GIPR (ENSMFAG00000043015) #33	EML2 (ENSMFAG00000001217) #34	OPA3 (ENSMFAG00000045575) #36	VASP (ENSMFAG00000036820) #37	PPM1N (ENSMFAG00000040939)	RTN2 (ENSMFAG00000002551)
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Olive baboon	MODERN SPECIES	12	PNMA8A (ENSPANG00000018286) #7	PNMA8C (ENSPANG00000033741) #8	CCDC8 (ENSPANG00000020252) #9	ENSPANG00000029483	PPP5C (ENSPANG00000002966) #10	HIF3A (ENSPANG00000014598) #11	ENSPANG00000044504 #12	ENSPANG00000039314 #12	ENSPANG00000038110 #13	IGFL3 (ENSPANG00000019926) #14	PGLYRP1 (ENSPANG00000048485) #17	CCDC61 (ENSPANG00000009365) #18	NOVA2 (ENSPANG00000023868) #19	NANOS2 (ENSPANG00000009327) #20	MYPOP (ENSPANG00000046784) #21	IRF2BP1 (ENSPANG00000002641) #22	FOXA3 (ENSPANG00000034535) #23	SYMPK (ENSPANG00000019930) #24	RSPH6A (ENSPANG00000011597) #25	DMWD (ENSPANG00000001288) #26	DMPK (ENSPANG00000002664) #27	SIX5 (ENSPANG00000005316) #28	MEIOSIN (ENSPANG00000018287) #29	FBXO46 (ENSPANG00000002640) #30	QPCTL (ENSPANG00000016116) #31	ENSPANG00000008802 #32	GIPR (ENSPANG00000014706) #33	EML2 (ENSPANG00000007941) #34	GPR4 (ENSPANG00000013282) #35	OPA3 (ENSPANG00000031982) #36	VASP (ENSPANG00000019931) #37
Cercopithecinae_d	ANCESTRAL SPECIES	9	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Sooty mangabey	MODERN SPECIES	228	PNMA8A (ENSCATG00000037135) #7	PNMA8C (ENSCATG00000016093) #8	CCDC8 (ENSCATG00000030098) #9	ENSCATG00000021418	PPP5C (ENSCATG00000031479) #10	HIF3A (ENSCATG00000013440) #11	IGFL1 (ENSCATG00000040141) #12	IGFL3 (ENSCATG00000018431) #14	ENSCATG00000032983	IGFL4 (ENSCATG00000019969) #16	PGLYRP1 (ENSCATG00000018338) #17	CCDC61 (ENSCATG00000033104) #18	NOVA2 (ENSCATG00000045122) #19	NANOS2 (ENSCATG00000018951) #20	MYPOP (ENSCATG00000044811) #21	IRF2BP1 (ENSCATG00000019478) #22	FOXA3 (ENSCATG00000040589) #23	SYMPK (ENSCATG00000045107) #24	RSPH6A (ENSCATG00000031236) #25	DMWD (ENSCATG00000041290) #26	DMPK (ENSCATG00000044065) #27	SIX5 (ENSCATG00000034595) #28	MEIOSIN (ENSCATG00000014100) #29	FBXO46 (ENSCATG00000019580) #30	QPCTL (ENSCATG00000035425) #31	ENSCATG00000031591 #32	GIPR (ENSCATG00000039010) #33	EML2 (ENSCATG00000044498) #34	GPR4 (ENSCATG00000015059) #35	OPA3 (ENSCATG00000032509) #36	VASP (ENSCATG00000042996) #37
Vervet Monkey	MODERN SPECIES	25	PNMA8B (ENSCSAG00000019633) ##7	PNMA8A (ENSCSAG00000003053) #7	CCDC8 (ENSCSAG00000019632) #9	ENSCSAG00000019631	ENSCSAG00000019630	PPP5C (ENSCSAG00000003061) #10	HIF3A (ENSCSAG00000003068) #11	IGFL1 (ENSCSAG00000003071) #12	IGFL3 (ENSCSAG00000003072) #14	IGFL4 (ENSCSAG00000003076) #16	PGLYRP1 (ENSCSAG00000003083) #17	CCDC61 (ENSCSAG00000003098) #18	NOVA2 (ENSCSAG00000003105) #19	NANOS2 (ENSCSAG00000019629) #20	MYPOP (ENSCSAG00000003108) #21	IRF2BP1 (ENSCSAG00000019628) #22	FOXA3 (ENSCSAG00000003110) #23	SYMPK (ENSCSAG00000003115) #24	RSPH6A (ENSCSAG00000003122) #25	DMWD (ENSCSAG00000003130) #26	DMPK (ENSCSAG00000003146) #27	SIX5 (ENSCSAG00000003151) #28	MEIOSIN (ENSCSAG00000003154) #29	FBXO46 (ENSCSAG00000019627) #30	QPCTL (ENSCSAG00000003156) #31	SNRPD2 (ENSCSAG00000003157) #32	GIPR (ENSCSAG00000003163) #33	GPR4 (ENSCSAG00000019626) #35	OPA3 (ENSCSAG00000003168) #36	VASP (ENSCSAG00000003169) #37	PPM1N (ENSCSAG00000003172)
Rhinopithecus	ANCESTRAL SPECIES	16	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT00390000015797.c.b.d	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.A.b #15	ENSGT00940000155230.gd #13	ENSGT00390000009557.A.a #14	ENSGT00390000017625.d	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765.p #37
Golden snub-nosed monkey	MODERN SPECIES	2027	PNMA8C (ENSRROG00000027253) #8	ENSRROG00000038440	PPP5C (ENSRROG00000027318) #10	HIF3A (ENSRROG00000032780) #11	IGFL1 (ENSRROG00000029689) #12	IGFL2 (ENSRROG00000012003) #15	ENSRROG00000045549 #13	IGFL3 (ENSRROG00000039749) #14	ENSRROG00000043631	IGFL4 (ENSRROG00000043261) #16	PGLYRP1 (ENSRROG00000035762) #17	CCDC61 (ENSRROG00000032654) #18	NOVA2 (ENSRROG00000037399) #19	NANOS2 (ENSRROG00000014903) #20	MYPOP (ENSRROG00000031078) #21	IRF2BP1 (ENSRROG00000024812) #22	FOXA3 (ENSRROG00000041934) #23	SYMPK (ENSRROG00000024834) #24	RSPH6A (ENSRROG00000038540) #25	DMWD (ENSRROG00000036990) #26	DMPK (ENSRROG00000037325) #27	SIX5 (ENSRROG00000026145) #28	MEIOSIN (ENSRROG00000037479) #29	FBXO46 (ENSRROG00000027737) #30	QPCTL (ENSRROG00000043413) #31	SNRPD2 (ENSRROG00000034764) #32	GIPR (ENSRROG00000031321) #33	EML2 (ENSRROG00000035796) #34	GPR4 (ENSRROG00000019999) #35	OPA3 (ENSRROG00000034269) #36	VASP (ENSRROG00000044619) #37
Black snub-nosed monkey	MODERN SPECIES	477	PNMA8A (ENSRBIG00000032652) #7	PNMA8C (ENSRBIG00000007752) #8	ENSRBIG00000041650	PPP5C (ENSRBIG00000043486) #10	HIF3A (ENSRBIG00000037340) #11	IGFL1 (ENSRBIG00000041594) #12	IGFL2 (ENSRBIG00000013672) #15	ENSRBIG00000037692 #13	ENSRBIG00000041617 #14	ENSRBIG00000026369	IGFL4 (ENSRBIG00000017354) #16	PGLYRP1 (ENSRBIG00000041217) #17	CCDC61 (ENSRBIG00000027796) #18	NANOS2 (ENSRBIG00000023726) #20	MYPOP (ENSRBIG00000035669) #21	IRF2BP1 (ENSRBIG00000025631) #22	FOXA3 (ENSRBIG00000037992) #23	SYMPK (ENSRBIG00000040963) #24	RSPH6A (ENSRBIG00000044850) #25	DMWD (ENSRBIG00000038254) #26	DMPK (ENSRBIG00000033839) #27	SIX5 (ENSRBIG00000013549) #28	MEIOSIN (ENSRBIG00000043746) #29	FBXO46 (ENSRBIG00000013409) #30	QPCTL (ENSRBIG00000037229) #31	ENSRBIG00000040969 #32	GIPR (ENSRBIG00000044071) #33	EML2 (ENSRBIG00000027020) #34	GPR4 (ENSRBIG00000032340) #35	OPA3 (ENSRBIG00000038135) #36	ENSRBIG00000034996 #37
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C.c #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cebidae	ANCESTRAL SPECIES	8	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C.c #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb.d #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765.k #37
Marmoset	MODERN SPECIES	14	PTGIR (ENSCJAG00000011850)	CALM3 (ENSCJAG00000078405)	PNMA8B (ENSCJAG00000011875) ##7	PNMA8C (ENSCJAG00000075292) #8	CCDC8 (ENSCJAG00000074769) #9	PPP5C (ENSCJAG00000011891) #10	HIF3A (ENSCJAG00000012019) #11	ENSCJAG00000022850	IGFL1 (ENSCJAG00000012086) #12	PGLYRP1 (ENSCJAG00000012095) #17	CCDC61 (ENSCJAG00000012104) #18	NOVA2 (ENSCJAG00000012121) #19	ENSCJAG00000074719	NANOS2 (ENSCJAG00000012141) #20	MYPOP (ENSCJAG00000063769) #21	IRF2BP1 (ENSCJAG00000038370) #22	FOXA3 (ENSCJAG00000073792) #23	SYMPK (ENSCJAG00000012172) #24	RSPH6A (ENSCJAG00000053794) #25	DMWD (ENSCJAG00000012286) #26	DMPK (ENSCJAG00000012303) #27	SIX5 (ENSCJAG00000012372) #28	FBXO46 (ENSCJAG00000012379) #30	QPCTL (ENSCJAG00000082509) #31	ENSCJAG00000019291 #32	GIPR (ENSCJAG00000012422) #33	EML2 (ENSCJAG00000012469) #34	GPR4 (ENSCJAG00000047762) #35	OPA3 (ENSCJAG00000045305) #36	ENSCJAG00000012536 #37	PPM1N (ENSCJAG00000012560)
Cebidae_a	ANCESTRAL SPECIES	20	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C.c #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb.c.b #32	ENSGT00390000017608.b.nb.d #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Capuchin	MODERN SPECIES	296							PNMA8A (ENSCCAG00000023382) #7	CCDC8 (ENSCCAG00000033018) #9	PPP5C (ENSCCAG00000021171) #10	HIF3A (ENSCCAG00000028768) #11	IGFL1 (ENSCCAG00000020676) #12	PGLYRP1 (ENSCCAG00000032492) #17	CCDC61 (ENSCCAG00000028796) #18	NOVA2 (ENSCCAG00000037311) #19	MYPOP (ENSCCAG00000026331) #21	IRF2BP1 (ENSCCAG00000019148) #22	FOXA3 (ENSCCAG00000025829) #23	SYMPK (ENSCCAG00000036309) #24	RSPH6A (ENSCCAG00000026332) #25	DMWD (ENSCCAG00000035234) #26	DMPK (ENSCCAG00000000286) #27	SIX5 (ENSCCAG00000021156) #28	MEIOSIN (ENSCCAG00000026595) #29	ENSCCAG00000004615 #30	QPCTL (ENSCCAG00000006394) #31	SNRPD2 (ENSCCAG00000035396) #32	GIPR (ENSCCAG00000026591) #33	EML2 (ENSCCAG00000030345) #34	GPR4 (ENSCCAG00000014726) #35	OPA3 (ENSCCAG00000027564) #36	ENSCCAG00000029400 #37
Bolivian squirrel monkey	MODERN SPECIES	169	PRKD2 (ENSSBOG00000035342)	DACT3 (ENSSBOG00000033658)	GNG8 (ENSSBOG00000031506)	PTGIR (ENSSBOG00000035755)	CALM3 (ENSSBOG00000028097)	PNMA8A (ENSSBOG00000010196) #7	PPP5C (ENSSBOG00000034724) #10	HIF3A (ENSSBOG00000032075) #11	ENSSBOG00000025247 #12	ENSSBOG00000034581	IGFL1 (ENSSBOG00000027173) #12	PGLYRP1 (ENSSBOG00000027039) #17	CCDC61 (ENSSBOG00000032328) #18	ENSSBOG00000001000 #19	MYPOP (ENSSBOG00000020847) #21	IRF2BP1 (ENSSBOG00000011517) #22	FOXA3 (ENSSBOG00000021160) #23	SYMPK (ENSSBOG00000034497) #24	RSPH6A (ENSSBOG00000026548) #25	DMWD (ENSSBOG00000035837) #26	DMPK (ENSSBOG00000022498) #27	SIX5 (ENSSBOG00000029066) #28	MEIOSIN (ENSSBOG00000020068) #29	FBXO46 (ENSSBOG00000016576) #30	ENSSBOG00000035164 #32	GIPR (ENSSBOG00000023899) #33	EML2 (ENSSBOG00000022777) #34	GPR4 (ENSSBOG00000019451) #35	OPA3 (ENSSBOG00000030278) #36	ENSSBOG00000025296 #37	PPM1N (ENSSBOG00000035628)
Mas night monkey	MODERN SPECIES	1284	PRKD2 (ENSANAG00000031053)	DACT3 (ENSANAG00000031822)	GNG8 (ENSANAG00000023974)	PTGIR (ENSANAG00000030542)	CALM3 (ENSANAG00000035148)	PNMA8A (ENSANAG00000029356) #7	CCDC8 (ENSANAG00000027675) #9	PPP5C (ENSANAG00000038336) #10	HIF3A (ENSANAG00000036285) #11	ENSANAG00000005209	IGFL1 (ENSANAG00000034626) #12	PGLYRP1 (ENSANAG00000036439) #17	CCDC61 (ENSANAG00000024615) #18	NOVA2 (ENSANAG00000022520) #19	MYPOP (ENSANAG00000034331) #21	IRF2BP1 (ENSANAG00000019622) #22	FOXA3 (ENSANAG00000036063) #23	SYMPK (ENSANAG00000021087) #24	RSPH6A (ENSANAG00000020023) #25	DMWD (ENSANAG00000030434) #26	DMPK (ENSANAG00000020485) #27	SIX5 (ENSANAG00000029935) #28	MEIOSIN (ENSANAG00000020001) #29	FBXO46 (ENSANAG00000019304) #30	QPCTL (ENSANAG00000035587) #31	ENSANAG00000019777 ##32	GIPR (ENSANAG00000033440) #33	ENSANAG00000029331 #34	GPR4 (ENSANAG00000019611) #35	OPA3 (ENSANAG00000023653) #36	ENSANAG00000034983 #37
Strepsirrhini	ANCESTRAL SPECIES	16	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000170636	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Lemuriformes	ANCESTRAL SPECIES	15	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.nb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Greater bamboo lemur	MODERN SPECIES	79												CCDC61 (ENSPSMG00000024535) #18	NOVA2 (ENSPSMG00000024538) #19	NANOS2 (ENSPSMG00000024540) #20	ENSPSMG00000024542	IRF2BP1 (ENSPSMG00000024544) #22	FOXA3 (ENSPSMG00000024546) #23	SYMPK (ENSPSMG00000024583) #24	RSPH6A (ENSPSMG00000024602) #25	DMWD (ENSPSMG00000024609) #26	DMPK (ENSPSMG00000024718) #27	SIX5 (ENSPSMG00000024751) #28	MEIOSIN (ENSPSMG00000024755) #29	FBXO46 (ENSPSMG00000024762) #30	QPCTL (ENSPSMG00000024775) #31	ENSPSMG00000024780 #32	GIPR (ENSPSMG00000024806) #33	EML2 (ENSPSMG00000024861) #34	GPR4 (ENSPSMG00000024886) #35	OPA3 (ENSPSMG00000024888) #36	VASP (ENSPSMG00000024889) #37
Coquerels sifaka	MODERN SPECIES	568	PRKD2 (ENSPCOG00000018544)	DACT3 (ENSPCOG00000024045)	GNG8 (ENSPCOG00000014293)	PTGIR (ENSPCOG00000022780)	CALM3 (ENSPCOG00000017236)	PNMA8B (ENSPCOG00000020660) ##7	ENSPCOG00000021687	PNMA8A (ENSPCOG00000025636) #7	ENSPCOG00000019586 #10	HIF3A (ENSPCOG00000022775) #11	IGFL1 (ENSPCOG00000013757) #12	PGLYRP1 (ENSPCOG00000027266) #17	CCDC61 (ENSPCOG00000024920) #18	NOVA2 (ENSPCOG00000022693) #19	MYPOP (ENSPCOG00000020339) #21	IRF2BP1 (ENSPCOG00000007598) #22	FOXA3 (ENSPCOG00000022077) #23	SYMPK (ENSPCOG00000023740) #24	RSPH6A (ENSPCOG00000014359) #25	DMWD (ENSPCOG00000019486) #26	DMPK (ENSPCOG00000021802) #27	SIX5 (ENSPCOG00000013322) #28	MEIOSIN (ENSPCOG00000016822) #29	FBXO46 (ENSPCOG00000000122) #30	QPCTL (ENSPCOG00000018844) #31	SNRPD2 (ENSPCOG00000028811) #32	GIPR (ENSPCOG00000021969) #33	EML2 (ENSPCOG00000018079) #34	GPR4 (ENSPCOG00000000191) #35	OPA3 (ENSPCOG00000017860) #36	VASP (ENSPCOG00000013513) #37
Mouse lemur	MODERN SPECIES	14	FKRP (ENSMICG00000043598)	STRN4 (ENSMICG00000015400)	PRKD2 (ENSMICG00000015377)	DACT3 (ENSMICG00000042964)	GNG8 (ENSMICG00000011920)	PTGIR (ENSMICG00000029447)	CALM3 (ENSMICG00000028969)	PNMA8A (ENSMICG00000008321) #7	PPP5C (ENSMICG00000031666) #10	HIF3A (ENSMICG00000016033) #11	IGFL1 (ENSMICG00000028260) #12	PGLYRP1 (ENSMICG00000033644) #17	CCDC61 (ENSMICG00000003511) #18	NOVA2 (ENSMICG00000028720) #19	MYPOP (ENSMICG00000045279) #21	IRF2BP1 (ENSMICG00000001894) #22	FOXA3 (ENSMICG00000038321) #23	SYMPK (ENSMICG00000001871) #24	RSPH6A (ENSMICG00000001866) #25	ENSMICG00000047465 #26	DMPK (ENSMICG00000001848) #27	SIX5 (ENSMICG00000042264) #28	MEIOSIN (ENSMICG00000036620) #29	FBXO46 (ENSMICG00000028138) #30	QPCTL (ENSMICG00000001842) #31	SNRPD2 (ENSMICG00000031545) #32	GIPR (ENSMICG00000001830) #33	EML2 (ENSMICG00000001822) #34	GPR4 (ENSMICG00000046993) #35	OPA3 (ENSMICG00000046590) #36	VASP (ENSMICG00000044750) #37
Bushbaby	MODERN SPECIES	267	DACT3 (ENSOGAG00000030948)	GNG8 (ENSOGAG00000029514)	PTGIR (ENSOGAG00000030472)	CALM3 (ENSOGAG00000014764)	PNMA8B (ENSOGAG00000028036) ##7	CCDC8 (ENSOGAG00000007549) #9	ENSOGAG00000031114	PPP5C (ENSOGAG00000015987) #10	HIF3A (ENSOGAG00000008187) #11	ENSOGAG00000032211 #16	PGLYRP1 (ENSOGAG00000007305) #17	CCDC61 (ENSOGAG00000007302) #18	NOVA2 (ENSOGAG00000028973) #19	NANOS2 (ENSOGAG00000032290) #20	MYPOP (ENSOGAG00000013500) #21	IRF2BP1 (ENSOGAG00000030584) #22	FOXA3 (ENSOGAG00000030286) #23	SYMPK (ENSOGAG00000013483) #24	RSPH6A (ENSOGAG00000013480) #25	DMWD (ENSOGAG00000033214) #26	DMPK (ENSOGAG00000013463) #27	SIX5 (ENSOGAG00000013460) #28	FBXO46 (ENSOGAG00000033472) #30	QPCTL (ENSOGAG00000003952) #31	SNRPD2 (ENSOGAG00000030128) #32	GIPR (ENSOGAG00000012568) #33	EML2 (ENSOGAG00000033974) #34	GPR4 (ENSOGAG00000029132) #35	OPA3 (ENSOGAG00000033310) #36	VASP (ENSOGAG00000011276) #37	PPM1N (ENSOGAG00000033341)
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Glires	ANCESTRAL SPECIES	6	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Rodentia	ANCESTRAL SPECIES	8	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B.p.b.a.b.a.b #16	ENSGT00390000009557.B.p.b.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Marmotini	ANCESTRAL SPECIES	7	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.p.a.a #16	ENSGT00390000009557.B.p.a.b #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Marmotini_b	ANCESTRAL SPECIES	49										ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Squirrel	MODERN SPECIES	306											ENSSTOG00000031132	PGLYRP1 (ENSSTOG00000020188) #17	CCDC61 (ENSSTOG00000007497) #18	NOVA2 (ENSSTOG00000022126) #19	NANOS2 (ENSSTOG00000021724) #20	IRF2BP1 (ENSSTOG00000028673) #22	FOXA3 (ENSSTOG00000027457) #23	SYMPK (ENSSTOG00000001534) #24	RSPH6A (ENSSTOG00000001528) #25	DMWD (ENSSTOG00000006139) #26	DMPK (ENSSTOG00000001508) #27	SIX5 (ENSSTOG00000028295) #28	FBXO46 (ENSSTOG00000023556) #30	QPCTL (ENSSTOG00000013895) #31	SNRPD2 (ENSSTOG00000024377) #32	GIPR (ENSSTOG00000028727) #33	EML2 (ENSSTOG00000013316) #34	GPR4 (ENSSTOG00000022015) #35	OPA3 (ENSSTOG00000029170) #36	VASP (ENSSTOG00000027705) #37	PPM1N (ENSSTOG00000002827)
Arctic ground squirrel	MODERN SPECIES	297							ENSUPAG00010021459 #16	ENSUPAG00010021464 #16	ENSUPAG00010021465 #20	PGLYRP1 (ENSUPAG00010021468) #17	CCDC61 (ENSUPAG00010021470) #18	NOVA2 (ENSUPAG00010021477) #19	ENSUPAG00010021480 #20	ENSUPAG00010021483	MYPOP (ENSUPAG00010021489) #21	IRF2BP1 (ENSUPAG00010021494) #22	FOXA3 (ENSUPAG00010021496) #23	SYMPK (ENSUPAG00010021507) #24	RSPH6A (ENSUPAG00010021524) #25	DMWD (ENSUPAG00010021530) #26	DMPK (ENSUPAG00010021540) #27	SIX5 (ENSUPAG00010021595) #28	MEIOSIN (ENSUPAG00010021596) #29	FBXO46 (ENSUPAG00010021600) #30	QPCTL (ENSUPAG00010021602) #31	SNRPD2 (ENSUPAG00010021605) #32	GIPR (ENSUPAG00010021609) #33	EML2 (ENSUPAG00010021623) #34	GPR4 (ENSUPAG00010021640) #35	OPA3 (ENSUPAG00010021642) #36	VASP (ENSUPAG00010021647) #37
Alpin marmot	MODERN SPECIES	45	PPP5C (ENSMMMG00000013822) #10	HIF3A (ENSMMMG00000013829) #11	ENSMMMG00000013847 #16	ENSMMMG00000013856 #16	ENSMMMG00000013858	IGFL4 (ENSMMMG00000013859) #16	ENSMMMG00000013867	ENSMMMG00000013871	ENSMMMG00000013872 #16	ENSMMMG00000013880	NANOS2 (ENSMMMG00000013883) #20	PGLYRP1 (ENSMMMG00000013886) #17	CCDC61 (ENSMMMG00000013890) #18	NOVA2 (ENSMMMG00000013905) #19	MYPOP (ENSMMMG00000013910) #21	IRF2BP1 (ENSMMMG00000013923) #22	FOXA3 (ENSMMMG00000013927) #23	SYMPK (ENSMMMG00000013938) #24	RSPH6A (ENSMMMG00000013966) #25	DMPK (ENSMMMG00000013984) #27	ENSMMMG00000014098 #28	MEIOSIN (ENSMMMG00000014100) #29	FBXO46 (ENSMMMG00000014127) #30	QPCTL (ENSMMMG00000014131) #31	ENSMMMG00000014144 #32	GIPR (ENSMMMG00000014147) #33	EML2 (ENSMMMG00000014164) #34	GPR4 (ENSMMMG00000014230) #35	OPA3 (ENSMMMG00000014232) #36	VASP (ENSMMMG00000014235) #37	ENSMMMG00000014265
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005024643 #16	ENSSVLG00005024617 #16	ENSSVLG00005024595 #16	ENSSVLG00005024573 #16	ENSSVLG00005024560	ENSSVLG00005024545 #16	ENSSVLG00005024520 #16	ENSSVLG00005024476	ENSSVLG00005024415 #16	PGLYRP1 (ENSSVLG00005024391) #17	CCDC61 (ENSSVLG00005024368) #18	NOVA2 (ENSSVLG00005024343) #19	ENSSVLG00005024334	NANOS2 (ENSSVLG00005024317) #20	MYPOP (ENSSVLG00005024286) #21	IRF2BP1 (ENSSVLG00005024265) #22	FOXA3 (ENSSVLG00005024238) #23	SYMPK (ENSSVLG00005024212) #24	RSPH6A (ENSSVLG00005024118) #25	ENSSVLG00005024059 #26	DMPK (ENSSVLG00005023879) #27	SIX5 (ENSSVLG00005023801) #28	MEIOSIN (ENSSVLG00005023736) #29	FBXO46 (ENSSVLG00005023711) #30	QPCTL (ENSSVLG00005023664) #31	ENSSVLG00005023631 #32	GIPR (ENSSVLG00005023358) #33	EML2 (ENSSVLG00005023025) #34	GPR4 (ENSSVLG00005022943) #35	OPA3 (ENSSVLG00005022913) #36	VASP (ENSSVLG00005022815) #37
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00390000007074	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Hystricomorpha_a	ANCESTRAL SPECIES	39	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00390000007074	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Hystricomorpha_b	ANCESTRAL SPECIES	49	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00390000007074	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Long-tailed chinchilla	MODERN SPECIES	281	STRN4 (ENSCLAG00000001542)	PRKD2 (ENSCLAG00000001395)	ENSCLAG00000001276	GNG8 (ENSCLAG00000004399)	PTGIR (ENSCLAG00000004207)	CALM3 (ENSCLAG00000003822)	ENSCLAG00000003395	ENSCLAG00000002763	PPP5C (ENSCLAG00000001548) #10	HIF3A (ENSCLAG00000001139) #11	PGLYRP1 (ENSCLAG00000001072) #17	ENSCLAG00000001044 #18	ENSCLAG00000000991 #19	NANOS2 (ENSCLAG00000001832) #20	MYPOP (ENSCLAG00000001704) #21	IRF2BP1 (ENSCLAG00000001668) #22	FOXA3 (ENSCLAG00000001661) #23	SYMPK (ENSCLAG00000001206) #24	RSPH6A (ENSCLAG00000002444) #25	DMWD (ENSCLAG00000002306) #26	DMPK (ENSCLAG00000000761) #27	SIX5 (ENSCLAG00000000557) #28	MEIOSIN (ENSCLAG00000000408) #29	FBXO46 (ENSCLAG00000001009) #30	QPCTL (ENSCLAG00000000941) #31	SNRPD2 (ENSCLAG00000000931) #32	GIPR (ENSCLAG00000001135) #33	EML2 (ENSCLAG00000000732) #34	GPR4 (ENSCLAG00000017535) #35	OPA3 (ENSCLAG00000000726) #36	VASP (ENSCLAG00000001737) #37
Degu	MODERN SPECIES	238	STRN4 (ENSODEG00000009103)	PRKD2 (ENSODEG00000006559)	ENSODEG00000006767	GNG8 (ENSODEG00000007360)	PTGIR (ENSODEG00000007904)	CALM3 (ENSODEG00000008486)	PNMA8A (ENSODEG00000006429) #7	ENSODEG00000006634	GPATCH1 (ENSODEG00000007103)	PPP5C (ENSODEG00000008796) #10	HIF3A (ENSODEG00000007136) #11	PGLYRP1 (ENSODEG00000006980) #17	CCDC61 (ENSODEG00000007872) #18	NOVA2 (ENSODEG00000008485) #19	MYPOP (ENSODEG00000006759) #21	IRF2BP1 (ENSODEG00000019485) #22	FOXA3 (ENSODEG00000007265) #23	SYMPK (ENSODEG00000007519) #24	ENSODEG00000019416	RSPH6A (ENSODEG00000006796) #25	DMWD (ENSODEG00000007827) #26	DMPK (ENSODEG00000008697) #27	SIX5 (ENSODEG00000007948) #28	ENSODEG00000008118 #29	FBXO46 (ENSODEG00000019705) #30	QPCTL (ENSODEG00000012513) #31	ENSODEG00000008857 #32	GIPR (ENSODEG00000010030) #33	EML2 (ENSODEG00000007963) #34	GPR4 (ENSODEG00000019587) #35	OPA3 (ENSODEG00000009423) #36
Naked mole-rat female	MODERN SPECIES	21	PTGIR (ENSHGLG00000007145)	Calm3 (ENSHGLG00000007790)	ENSHGLG00000009135	PNMA8A (ENSHGLG00000013517) #7	ENSHGLG00000009334	CCDC8 (ENSHGLG00000048973) #9	ENSHGLG00000015987 #10	HIF3A (ENSHGLG00000015903) #11	ENSHGLG00000032378 #12	PGLYRP1 (ENSHGLG00000044839) #17	CCDC61 (ENSHGLG00000016189) #18	NOVA2 (ENSHGLG00000016103) #19	NANOS2 (ENSHGLG00000038379) #20	ENSHGLG00000049227	MYPOP (ENSHGLG00000017201) #21	IRF2BP1 (ENSHGLG00000021426) #22	FOXA3 (ENSHGLG00000019353) #23	SYMPK (ENSHGLG00000005228) #24	RSPH6A (ENSHGLG00000009028) #25	DMWD (ENSHGLG00000005355) #26	DMPK (ENSHGLG00000006955) #27	ENSHGLG00000036477	ENSHGLG00000039927 #28	MEIOSIN (ENSHGLG00000005115) #29	FBXO46 (ENSHGLG00000046481) #30	QPCTL (ENSHGLG00000009596) #31	ENSHGLG00000015364 #32	GIPR (ENSHGLG00000015458) #33	EML2 (ENSHGLG00000018598) #34	GPR4 (ENSHGLG00000036046) #35	OPA3 (ENSHGLG00000016016) #36
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Kangaroo rat	MODERN SPECIES	475	Slc1a5 (ENSDORG00000008810)	Strn4 (ENSDORG00000005407)	Prkd2 (ENSDORG00000005405)	ENSDORG00000005404	Gng8 (ENSDORG00000005403)	Ptgir (ENSDORG00000005401)	Calm3 (ENSDORG00000029756)	Pnma8b (ENSDORG00000028483) ##7	ENSDORG00000023802 #7	Ppp5c (ENSDORG00000004665) #10	Hif3a (ENSDORG00000004664) #11	Pglyrp1 (ENSDORG00000027993) #17	Ccdc61 (ENSDORG00000010042) #18	Nova2 (ENSDORG00000026568) #19	Mypop (ENSDORG00000015093) #21	Irf2bp1 (ENSDORG00000015094) #22	Foxa3 (ENSDORG00000023140) #23	ENSDORG00000007530 #24	Dmwd (ENSDORG00000013780) #26	Rsph6a (ENSDORG00000013782) #25	Dmpk (ENSDORG00000013775) #27	Six5 (ENSDORG00000026570) #28	Fbxo46 (ENSDORG00000029689) #30	Qpctl (ENSDORG00000001733) #31	Gipr (ENSDORG00000001717) #33	Eml2 (ENSDORG00000008122) #34	Opa3 (ENSDORG00000024215) #36	Vasp (ENSDORG00000008121) #37	Ppm1n (ENSDORG00000008119)	Rtn2 (ENSDORG00000008114)	Fosb (ENSDORG00000008112)
Myomorpha	ANCESTRAL SPECIES	20	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Muroidea	ANCESTRAL SPECIES	18	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT01100000263479.D.a.d.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cricetidae	ANCESTRAL SPECIES	29	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.b.a	ENSGT01100000263479.D.a.d.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cricetinae	ANCESTRAL SPECIES	42									ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Golden Hamster	MODERN SPECIES	834									ENSMAUG00000014769	ENSMAUG00000014730	Pglyrp1 (ENSMAUG00000009434) #17	ENSMAUG00000003976 #18	Nova2 (ENSMAUG00000014038) #19	Mypop (ENSMAUG00000018164) #21	ENSMAUG00000019605	Irf2bp1 (ENSMAUG00000002822) #22	Foxa3 (ENSMAUG00000007869) #23	Rsph6a (ENSMAUG00000016903) #25	Sympk (ENSMAUG00000015657) #24	ENSMAUG00000009219 #27	Six5 (ENSMAUG00000017419) #28	Meiosin (ENSMAUG00000016220) #29	Fbxo46 (ENSMAUG00000019697) #30	Qpctl (ENSMAUG00000014498) #31	Snrpd2 (ENSMAUG00000018849) #32	Gipr (ENSMAUG00000021032) #33	Eml2 (ENSMAUG00000016205) #34	Opa3 (ENSMAUG00000015768) #36	Vasp (ENSMAUG00000018921) #37	Ppm1n (ENSMAUG00000011353)	ENSMAUG00000018994
Chinese hamster chok1gshd	MODERN SPECIES	328						ENSCGRG00001020237	ENSCGRG00001014992	ENSCGRG00001013587	ENSCGRG00001019604	ENSCGRG00001016889	ENSCGRG00001015639	Pglyrp1 (ENSCGRG00001014568) #17	Nova2 (ENSCGRG00001013374) #19	Nanos2 (ENSCGRG00001013726) #20	Mypop (ENSCGRG00001011751) #21	Irf2bp1 (ENSCGRG00001014712) #22	Foxa3 (ENSCGRG00001011296) #23	Sympk (ENSCGRG00001010086) #24	Rsph6a (ENSCGRG00001015748) #25	Dmwd (ENSCGRG00001012273) #26	Dmpk (ENSCGRG00001006164) #27	Six5 (ENSCGRG00001017935) #28	Meiosin (ENSCGRG00001020518) #29	Fbxo46 (ENSCGRG00001014313) #30	Qpctl (ENSCGRG00001000786) #31	Gipr (ENSCGRG00001000434) #33	Eml2 (ENSCGRG00001001692) #34	Gpr4 (ENSCGRG00001013541) #35	Opa3 (ENSCGRG00001016230) #36	Vasp (ENSCGRG00001008576) #37	Ppm1n (ENSCGRG00001001627)
Cricetidae_B	ANCESTRAL SPECIES	41					ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.b.b.a	ENSGT01100000263479.D.a.d.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000029738 #16	ENSPEMG00000030976	ENSPEMG00000024553	ENSPEMG00000025786	ENSPEMG00000025341	ENSPEMG00000030981	ENSPEMG00000028933	ENSPEMG00000026361	ENSPEMG00000009668	Pglyrp1 (ENSPEMG00000030075) #17	Ccdc61 (ENSPEMG00000016005) #18	Nova2 (ENSPEMG00000025491) #19	ENSPEMG00000030568	Nanos2 (ENSPEMG00000014999) #20	Mypop (ENSPEMG00000012458) #21	Irf2bp1 (ENSPEMG00000009598) #22	Foxa3 (ENSPEMG00000016723) #23	Sympk (ENSPEMG00000007564) #24	Rsph6a (ENSPEMG00000009606) #25	Dmwd (ENSPEMG00000018276) #26	Dmpk (ENSPEMG00000030626) #27	Six5 (ENSPEMG00000014887) #28	Meiosin (ENSPEMG00000011376) #29	Fbxo46 (ENSPEMG00000012576) #30	Qpctl (ENSPEMG00000016557) #31	Snrpd2 (ENSPEMG00000004117) #32	Gipr (ENSPEMG00000014106) #33	Eml2 (ENSPEMG00000008721) #34	Gpr4 (ENSPEMG00000000584) #35	Opa3 (ENSPEMG00000024608) #36	Vasp (ENSPEMG00000001352) #37
Prairie vole	MODERN SPECIES	157								ENSMOCG00000017695	ENSMOCG00000003246	Pglyrp1 (ENSMOCG00000009253) #17	ENSMOCG00000019652 #18	Nova2 (ENSMOCG00000018489) #19	Nanos2 (ENSMOCG00000001985) #20	Mypop (ENSMOCG00000015120) #21	ENSMOCG00000000161	Irf2bp1 (ENSMOCG00000002955) #22	Foxa3 (ENSMOCG00000002412) #23	Sympk (ENSMOCG00000008388) #24	Rsph6a (ENSMOCG00000000271) #25	Dmwd (ENSMOCG00000017387) #26	ENSMOCG00000013066 #27	Six5 (ENSMOCG00000004062) #28	Meiosin (ENSMOCG00000014656) #29	Fbxo46 (ENSMOCG00000019977) #30	Qpctl (ENSMOCG00000015780) #31	Snrpd2 (ENSMOCG00000017080) #32	Gipr (ENSMOCG00000015992) #33	Eml2 (ENSMOCG00000013139) #34	Gpr4 (ENSMOCG00000001007) #35	Opa3 (ENSMOCG00000013947) #36	Vasp (ENSMOCG00000001451) #37
Murinae	ANCESTRAL SPECIES	19	ENSGT01100000263479.D.a.d.b.a.a.c.b	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.c	ENSGT01100000263479.D.a.d.b.a.a.d	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.d	ENSGT01100000263479.D.a.d.b.a.b.a.a	ENSGT01100000263479.D.a.d.b.a.b.b	ENSGT01100000263479.D.a.d.b.b	ENSGT00390000009557.B #16	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Mus	ANCESTRAL SPECIES		ENSGT00940000161745 #11	ENSGT01100000263479.D.a.d.b.a.a.c.b	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.c	ENSGT01100000263479.D.a.d.b.a.a.d	ENSGT01100000263479.D.a.d.b.a.b.b	ENSGT01100000263479.D.a.d.b.b	ENSGT00390000009557.B #16	ENSGT01100000263517.b.d.m.a.a.a.b.`b.a	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740.g.a #19	ENSGT00940000161740.g.b #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Mus_A	ANCESTRAL SPECIES	1	ENSGT01100000263479.D.a.d.b.a.b.a.b.a.c	ENSGT01100000263479.D.a.d.b.a.a.d	ENSGT01100000263479.D.a.d.b.a.b.b.d	ENSGT01100000263479.D.a.d.b.a.b.b.c	ENSGT01100000263479.D.a.d.b.b	ENSGT00390000009557.B #16	ENSGT01100000263517.b.d.m.a.a.a.b.`b.a	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740.g.a #19	ENSGT00940000161740.g.b #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045.i #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Mus_B	ANCESTRAL SPECIES		ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.b	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740.g.a #19	ENSGT00940000161740.g.b #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045.i #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Mouse	MODERN SPECIES	16	Psg26 (ENSMUSG00000070799)	Psg25 (ENSMUSG00000070798)	Psg27 (ENSMUSG00000070797)	Psg23 (ENSMUSG00000074359)	Psg21 (ENSMUSG00000070796)	Psg20 (ENSMUSG00000063305)	Psg22 (ENSMUSG00000044903)	Psg19 (ENSMUSG00000004542)	Psg17 (ENSMUSG00000004540)	Mill2 (ENSMUSG00000040987)	Pglyrp1 (ENSMUSG00000030413) #17	Ccdc61 (ENSMUSG00000074358) #18	Nova2 (ENSMUSG00000030411) #19	Nanos2 (ENSMUSG00000051965) #20	Mypop (ENSMUSG00000048481) #21	Irf2bp1 (ENSMUSG00000044030) #22	Foxa3 (ENSMUSG00000040891) #23	Sympk (ENSMUSG00000023118) #24	Rsph6a (ENSMUSG00000040866) #25	Dmwd (ENSMUSG00000030410) #26	Dmpk (ENSMUSG00000030409) #27	Six5 (ENSMUSG00000040841) #28	Meiosin (ENSMUSG00000085601) #29	Fbxo46 (ENSMUSG00000050428) #30	Qpctl (ENSMUSG00000030407) #31	Snrpd2 (ENSMUSG00000040824) #32	Gipr (ENSMUSG00000030406) #33	Eml2 (ENSMUSG00000040811) #34	Gpr4 (ENSMUSG00000044317) #35	Opa3 (ENSMUSG00000052214) #36	Vasp (ENSMUSG00000030403) #37
Mus_C	ANCESTRAL SPECIES	15	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.a.a.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.a	ENSGT01100000263479.D.a.d.b.a.a.c.a.a.a.b.b	ENSGT01100000263479.D.a.d.b.a.a.c.a.b	ENSGT01100000263517.b.d.m.a.a.a.b.`b.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740.g.a #19	ENSGT00940000161740.g.b #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045.i #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.qb #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
spretus	MODERN SPECIES	16	MGP_SPRETEiJ_G0030334	MGP_SPRETEiJ_G0030335	Ceacam11 (MGP_SPRETEiJ_G0030336)	Ceacam13 (MGP_SPRETEiJ_G0030337)	Ceacam12 (MGP_SPRETEiJ_G0030338)	Igfl3 (MGP_SPRETEiJ_G0030339) #16	MGP_SPRETEiJ_G0030340	MGP_SPRETEiJ_G0030341	MGP_SPRETEiJ_G0030342	Pglyrp1 (MGP_SPRETEiJ_G0030343) #17	Ccdc61 (MGP_SPRETEiJ_G0030344) #18	Nova2 (MGP_SPRETEiJ_G0030345) #19	MGP_SPRETEiJ_G0030346 #19	Nanos2 (MGP_SPRETEiJ_G0030347) #20	Mypop (MGP_SPRETEiJ_G0030348) #21	Irf2bp1 (MGP_SPRETEiJ_G0030349) #22	Foxa3 (MGP_SPRETEiJ_G0030350) #23	MGP_SPRETEiJ_G0030351 #24	Rsph6a (MGP_SPRETEiJ_G0030352) #25	Dmwd (MGP_SPRETEiJ_G0030353) #26	Dmpk (MGP_SPRETEiJ_G0030354) #27	Six5 (MGP_SPRETEiJ_G0030355) #28	Meiosin (MGP_SPRETEiJ_G0030356) #29	Fbxo46 (MGP_SPRETEiJ_G0030357) #30	Qpctl (MGP_SPRETEiJ_G0030358) #31	MGP_SPRETEiJ_G0030359 #32	Gipr (MGP_SPRETEiJ_G0030360) #33	Eml2 (MGP_SPRETEiJ_G0030361) #34	Gpr4 (MGP_SPRETEiJ_G0030362) #35	Opa3 (MGP_SPRETEiJ_G0030363) #36	Vasp (MGP_SPRETEiJ_G0030364) #37
Steppe mouse	MODERN SPECIES	2900											ENSMSIG00000004443 #19	ENSMSIG00000004448 #19	Nanos2 (ENSMSIG00000004468) #20	Mypop (ENSMSIG00000004475) #21	ENSMSIG00000004494	Irf2bp1 (ENSMSIG00000004499) #22	Foxa3 (ENSMSIG00000004505) #23	Sympk (ENSMSIG00000004528) #24	Rsph6a (ENSMSIG00000004641) #25	ENSMSIG00000004668 #26	Dmpk (ENSMSIG00000004700) #27	Six5 (ENSMSIG00000004988) #28	Meiosin (ENSMSIG00000004995) #29	Fbxo46 (ENSMSIG00000005049) #30	Qpctl (ENSMSIG00000005068) #31	Snrpd2 (ENSMSIG00000005096) #32	Gipr (ENSMSIG00000005108) #33	Eml2 (ENSMSIG00000005175) #34	Gpr4 (ENSMSIG00000005462) #35	Opa3 (ENSMSIG00000005466) #36	Vasp (ENSMSIG00000005496) #37
Ryukyu mouse	MODERN SPECIES	16	Ccdc8 (MGP_CAROLIEiJ_G0029250) #9	Ppp5c (MGP_CAROLIEiJ_G0029251) #10	Hif3a (MGP_CAROLIEiJ_G0029252) #11	Psg16 (MGP_CAROLIEiJ_G0029253)	MGP_CAROLIEiJ_G0029254	MGP_CAROLIEiJ_G0029255	MGP_CAROLIEiJ_G0029256	Igfl3 (MGP_CAROLIEiJ_G0029257) #16	Mill1 (MGP_CAROLIEiJ_G0029258)	Pglyrp1 (MGP_CAROLIEiJ_G0029259) #17	Ccdc61 (MGP_CAROLIEiJ_G0029260) #18	MGP_CAROLIEiJ_G0029262 #19	MGP_CAROLIEiJ_G0029261 #19	Nanos2 (MGP_CAROLIEiJ_G0029263) #20	Mypop (MGP_CAROLIEiJ_G0029264) #21	Irf2bp1 (MGP_CAROLIEiJ_G0029265) #22	Foxa3 (MGP_CAROLIEiJ_G0029266) #23	Sympk (MGP_CAROLIEiJ_G0029267) #24	Rsph6a (MGP_CAROLIEiJ_G0029268) #25	Dmwd (MGP_CAROLIEiJ_G0029269) #26	Dmpk (MGP_CAROLIEiJ_G0029270) #27	Six5 (MGP_CAROLIEiJ_G0029271) #28	Meiosin (MGP_CAROLIEiJ_G0029272) #29	Fbxo46 (MGP_CAROLIEiJ_G0029273) #30	Qpctl (MGP_CAROLIEiJ_G0029274) #31	Snrpd2 (MGP_CAROLIEiJ_G0029275) #32	Gipr (MGP_CAROLIEiJ_G0029276) #33	Eml2 (MGP_CAROLIEiJ_G0029277) #34	Gpr4 (MGP_CAROLIEiJ_G0029278) #35	Opa3 (MGP_CAROLIEiJ_G0029279) #36	Vasp (MGP_CAROLIEiJ_G0029280) #37
Shrew mouse	MODERN SPECIES	10	Psg16 (MGP_PahariEiJ_G0021109)	Psg29 (MGP_PahariEiJ_G0021110)	Ceacam3 (MGP_PahariEiJ_G0021111)	MGP_PahariEiJ_G0021112	MGP_PahariEiJ_G0021113 #16	Psg17 (MGP_PahariEiJ_G0021114)	MGP_PahariEiJ_G0021116	MGP_PahariEiJ_G0021115	MGP_PahariEiJ_G0021117	Pglyrp1 (MGP_PahariEiJ_G0021119) #17	Ccdc61 (MGP_PahariEiJ_G0021120) #18	Nova2 (MGP_PahariEiJ_G0021121) #19	MGP_PahariEiJ_G0021122 #19	Nanos2 (MGP_PahariEiJ_G0021123) #20	Mypop (MGP_PahariEiJ_G0021124) #21	Irf2bp1 (MGP_PahariEiJ_G0021125) #22	Foxa3 (MGP_PahariEiJ_G0021126) #23	Sympk (MGP_PahariEiJ_G0021127) #24	Rsph6a (MGP_PahariEiJ_G0021128) #25	Dmwd (MGP_PahariEiJ_G0021129) #26	Dmpk (MGP_PahariEiJ_G0021130) #27	Six5 (MGP_PahariEiJ_G0021131) #28	Meiosin (MGP_PahariEiJ_G0021132) #29	Fbxo46 (MGP_PahariEiJ_G0021133) #30	Qpctl (MGP_PahariEiJ_G0021134) #31	Snrpd2 (MGP_PahariEiJ_G0021135) #32	Gipr (MGP_PahariEiJ_G0021136) #33	Eml2 (MGP_PahariEiJ_G0021137) #34	Gpr4 (MGP_PahariEiJ_G0021138) #35	Opa3 (MGP_PahariEiJ_G0021139) #36	Vasp (MGP_PahariEiJ_G0021140) #37
Rat	MODERN SPECIES		Mill1 (ENSRNOG00000017699)	ENSRNOG00000066787	Psg19 (ENSRNOG00000038101)	LOC102557319 (ENSRNOG00000071114)	ENSRNOG00000068164	AC093995.1 (ENSRNOG00000026891)	AC093995.3 (ENSRNOG00000051815)	ENSRNOG00000062548	Micb (ENSRNOG00000057645)	Pglyrp1 (ENSRNOG00000013395) #17	Ccdc61 (ENSRNOG00000013767) #18	Nova2 (ENSRNOG00000013847) #19	Nanos2 (ENSRNOG00000038088) #20	Mypop (ENSRNOG00000014132) #21	AC110846.1 (ENSRNOG00000038087)	Irf2bp1 (ENSRNOG00000014252) #22	Foxa3 (ENSRNOG00000014256) #23	Sympk (ENSRNOG00000014353) #24	Rsph6a (ENSRNOG00000061526) #25	Dmwd (ENSRNOG00000014984) #26	Dmpk (ENSRNOG00000015085) #27	Six5 (ENSRNOG00000060146) #28	Meiosin (ENSRNOG00000067421) #29	Fbxo46 (ENSRNOG00000008815) #30	Qpctl (ENSRNOG00000015413) #31	Snrpd2 (ENSRNOG00000015844) #32	Gipr (ENSRNOG00000015860) #33	Eml2 (ENSRNOG00000030127) #34	Gpr4 (ENSRNOG00000016362) #35	Opa3 (ENSRNOG00000025890)	Opa3 (ENSRNOG00000064373) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1616											ENSNGAG00000016192	Pglyrp1 (ENSNGAG00000012535) #17	ENSNGAG00000015060 #18	Nova2 (ENSNGAG00000014104) #19	Mypop (ENSNGAG00000010823) #21	Irf2bp1 (ENSNGAG00000016131) #22	Foxa3 (ENSNGAG00000018714) #23	Sympk (ENSNGAG00000000820) #24	Rsph6a (ENSNGAG00000020845) #25	Dmwd (ENSNGAG00000019523) #26	ENSNGAG00000013526 #27	Six5 (ENSNGAG00000010611) #28	Meiosin (ENSNGAG00000006560) #29	Fbxo46 (ENSNGAG00000017717) #30	Qpctl (ENSNGAG00000012368) #31	ENSNGAG00000010411 #32	Gipr (ENSNGAG00000014088) #33	Eml2 (ENSNGAG00000016674) #34	Gpr4 (ENSNGAG00000009194) #35	Opa3 (ENSNGAG00000015660) #36	Vasp (ENSNGAG00000012981) #37
Lesser Egyptian jerboa	MODERN SPECIES	277														Nova2 (ENSJJAG00000000944) #19	Mypop (ENSJJAG00000007992) #21	Irf2bp1 (ENSJJAG00000011679) #22	Foxa3 (ENSJJAG00000006780) #23	Sympk (ENSJJAG00000006633) #24	Dmwd (ENSJJAG00000004567) #26	ENSJJAG00000004112 #27	Six5 (ENSJJAG00000003876) #28	ENSJJAG00000003426 #29	Fbxo46 (ENSJJAG00000011631) #30	Qpctl (ENSJJAG00000002781) #31	Snrpd2 (ENSJJAG00000002622) #32
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Suina	ANCESTRAL SPECIES	2	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000170636	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Chacoan peccary	MODERN SPECIES	799	FKRP (ENSCWAG00000010618)	STRN4 (ENSCWAG00000010545)	PRKD2 (ENSCWAG00000010476)	DACT3 (ENSCWAG00000010426)	GNG8 (ENSCWAG00000010405)	PTGIR (ENSCWAG00000010365)	CALM3 (ENSCWAG00000010293)	PPP5C (ENSCWAG00000010062) #10	HIF3A (ENSCWAG00000008758) #11	PGLYRP1 (ENSCWAG00000008579) #17	CCDC61 (ENSCWAG00000008530) #18	NOVA2 (ENSCWAG00000008485) #19	NANOS2 (ENSCWAG00000008461) #20	ENSCWAG00000008443	MYPOP (ENSCWAG00000008415) #21	IRF2BP1 (ENSCWAG00000008392) #22	FOXA3 (ENSCWAG00000008358) #23	SYMPK (ENSCWAG00000008306) #24	RSPH6A (ENSCWAG00000008233) #25	DMWD (ENSCWAG00000008169) #26	DMPK (ENSCWAG00000008009) #27	SIX5 (ENSCWAG00000007894) #28	FBXO46 (ENSCWAG00000007733) #30	QPCTL (ENSCWAG00000007680) #31	SNRPD2 (ENSCWAG00000007655) #32	GIPR (ENSCWAG00000007383) #33	EML2 (ENSCWAG00000006972) #34	GPR4 (ENSCWAG00000006910) #35	OPA3 (ENSCWAG00000006875) #36	VASP (ENSCWAG00000006847) #37	PPM1N (ENSCWAG00000006758)
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cetacea	ANCESTRAL SPECIES	6	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Odontoceti	ANCESTRAL SPECIES	6	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a.d #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a.d #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a.d #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Narwhal	MODERN SPECIES	296	PRKD2 (ENSMMNG00015008344)	DACT3 (ENSMMNG00015008322)	GNG8 (ENSMMNG00015008308)	PTGIR (ENSMMNG00015008294)	CALM3 (ENSMMNG00015008255)	CCDC8 (ENSMMNG00015008209) #9	PNMA8C (ENSMMNG00015008203) #8	ENSMMNG00015008192 #9	PPP5C (ENSMMNG00015008098) #10	HIF3A (ENSMMNG00015007921) #11	CCDC61 (ENSMMNG00015007871) #18	NOVA2 (ENSMMNG00015007847) #19	NANOS2 (ENSMMNG00015007835) #20	ENSMMNG00015007819	MYPOP (ENSMMNG00015007811) #21	IRF2BP1 (ENSMMNG00015007799) #22	FOXA3 (ENSMMNG00015007790) #23	SYMPK (ENSMMNG00015007752) #24	RSPH6A (ENSMMNG00015007710) #25	DMWD (ENSMMNG00015007676) #26	DMPK (ENSMMNG00015007633) #27	SIX5 (ENSMMNG00015007599) #28	MEIOSIN (ENSMMNG00015007567) #29	FBXO46 (ENSMMNG00015007550) #30	QPCTL (ENSMMNG00015007522) #31	ENSMMNG00015007488 #32	GIPR (ENSMMNG00015007342) #33	EML2 (ENSMMNG00015007133) #34	GPR4 (ENSMMNG00015007074) #35	OPA3 (ENSMMNG00015007066) #36	VASP (ENSMMNG00015007042) #37
Beluga whale	MODERN SPECIES	14	PRKD2 (ENSDLEG00000004024)	DACT3 (ENSDLEG00000004034)	GNG8 (ENSDLEG00000004040)	PTGIR (ENSDLEG00000004041)	CALM1 (ENSDLEG00000004044)	CCDC8 (ENSDLEG00000004049) #9	PNMA8C (ENSDLEG00000004056) #8	PNMA8A (ENSDLEG00000004062) #7	PPP5C (ENSDLEG00000004066) #10	HIF3A (ENSDLEG00000004077) #11	CCDC61 (ENSDLEG00000004090) #18	NOVA2 (ENSDLEG00000004096) #19	NANOS2 (ENSDLEG00000004101) #20	ENSDLEG00000004104	MYPOP (ENSDLEG00000004110) #21	IRF2BP1 (ENSDLEG00000004112) #22	FOXA3 (ENSDLEG00000004115) #23	SYMPK (ENSDLEG00000004122) #24	RSPH6A (ENSDLEG00000004133) #25	DMWD (ENSDLEG00000000077) #26	DMPK (ENSDLEG00000000090) #27	SIX5 (ENSDLEG00000000119) #28	FBXO46 (ENSDLEG00000000130) #30	QPCTL (ENSDLEG00000000148) #31	SNRPD2 (ENSDLEG00000000188) #32	GIPR (ENSDLEG00000000221) #33	EML2 (ENSDLEG00000000275) #34	OPA3 (ENSDLEG00000000472) #36	VASP (ENSDLEG00000000495) #37	ENSDLEG00000000541	RTN2 (ENSDLEG00000000550)
Vaquita	MODERN SPECIES	10	DACT3 (ENSPSNG00000021641)	GNG8 (ENSPSNG00000021667)	PTGIR (ENSPSNG00000021685)	CALM3 (ENSPSNG00000005927)	ENSPSNG00000005987 ##7	CCDC8 (ENSPSNG00000006015) #9	PNMA8C (ENSPSNG00000006027) #8	PNMA8A (ENSPSNG00000006045) #7	PPP5C (ENSPSNG00000006084) #10	HIF3A (ENSPSNG00000006147) #11	CCDC61 (ENSPSNG00000006217) #18	NOVA2 (ENSPSNG00000006243) #19	NANOS2 (ENSPSNG00000006285) #20	MYPOP (ENSPSNG00000006305) #21	ENSPSNG00000006334	IRF2BP1 (ENSPSNG00000006350) #22	FOXA3 (ENSPSNG00000006380) #23	SYMPK (ENSPSNG00000006567) #24	ENSPSNG00000006688 #25	DMWD (ENSPSNG00000006737) #26	SIX5 (ENSPSNG00000006825) #28	FBXO46 (ENSPSNG00000006942) #30	QPCTL (ENSPSNG00000006987) #31	ENSPSNG00000007055 #32	GIPR (ENSPSNG00000007181) #33	EML2 (ENSPSNG00000007601) #34	GPR4 (ENSPSNG00000007964) #35	OPA3 (ENSPSNG00000007984) #36	VASP (ENSPSNG00000008004) #37	PPM1N (ENSPSNG00000008040)	RTN2 (ENSPSNG00000008107)
Dolphin	MODERN SPECIES	2108														NANOS2 (ENSTTRG00000014315) #20	MYPOP (ENSTTRG00000014314) #21	IRF2BP1 (ENSTTRG00000014313) #22	FOXA3 (ENSTTRG00000014312) #23	SYMPK (ENSTTRG00000014311) #24	RSPH6A (ENSTTRG00000014308) #25	DMWD (ENSTTRG00000014307) #26	DMPK (ENSTTRG00000014304) #27	SIX5 (ENSTTRG00000014303) #28	QPCTL (ENSTTRG00000014300) #31	SNRPD2 (ENSTTRG00000014299) #32	GIPR (ENSTTRG00000014291) #33	EML2 (ENSTTRG00000014285) #34	GPR4 (ENSTTRG00000014282) #35
Sperm whale	MODERN SPECIES	24														NANOS2 (ENSPCTG00005022323) #20	MYPOP (ENSPCTG00005022327) #21	IRF2BP1 (ENSPCTG00005022328) #22	FOXA3 (ENSPCTG00005022331) #23	SYMPK (ENSPCTG00005012494) #24	RSPH6A (ENSPCTG00005012600) #25	DMWD (ENSPCTG00005012784) #26	DMPK (ENSPCTG00005012889) #27	SIX5 (ENSPCTG00005013002) #28	MEIOSIN (ENSPCTG00005013085) #29	FBXO46 (ENSPCTG00005013309) #30	QPCTL (ENSPCTG00005013345) #31	SNRPD2 (ENSPCTG00005013438) #32	GIPR (ENSPCTG00005013545) #33	EML2 (ENSPCTG00005014306) #34	OPA3 (ENSPCTG00005014977) #36
Blue whale	MODERN SPECIES	10	DACT3 (ENSBMSG00010020888)	GNG8 (ENSBMSG00010020908)	PTGIR (ENSBMSG00010020919)	CALM3 (ENSBMSG00010020940)	CCDC8 (ENSBMSG00010020979) #9	PNMA8A (ENSBMSG00010020996) #7	PPP5C (ENSBMSG00010021017) #10	HIF3A (ENSBMSG00010021058) #11	IGFL1 (ENSBMSG00010021137) #12	PGLYRP1 (ENSBMSG00010021143) #17	CCDC61 (ENSBMSG00010021160) #18	NOVA2 (ENSBMSG00010021172) #19	NANOS2 (ENSBMSG00010014044) #20	MYPOP (ENSBMSG00010014070) #21	ENSBMSG00010014093	IRF2BP1 (ENSBMSG00010014111) #22	FOXA3 (ENSBMSG00010014125) #23	SYMPK (ENSBMSG00010014199) #24	ENSBMSG00010014352 #25	DMWD (ENSBMSG00010014405) #26	DMPK (ENSBMSG00010014458) #27	SIX5 (ENSBMSG00010014523) #28	MEIOSIN (ENSBMSG00010014548) #29	FBXO46 (ENSBMSG00010014606) #30	QPCTL (ENSBMSG00010014644) #31	SNRPD2 (ENSBMSG00010014687) #32	GIPR (ENSBMSG00010014763) #33	EML2 (ENSBMSG00010015025) #34	GPR4 (ENSBMSG00010015297) #35	OPA3 (ENSBMSG00010015309) #36	VASP (ENSBMSG00010015338) #37
Pecora	ANCESTRAL SPECIES	4	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Yarkand deer	MODERN SPECIES	27	ENSCHYG00000014899	GNG8 (ENSCHYG00000014847)	PTGIR (ENSCHYG00000014757)	CALM3 (ENSCHYG00000014426)	CCDC8 (ENSCHYG00000014352) #9	ENSCHYG00000014216	PNMA8A (ENSCHYG00000014197) #7	PPP5C (ENSCHYG00000013920) #10	HIF3A (ENSCHYG00000013457) #11	ENSCHYG00000013392 #12	PGLYRP1 (ENSCHYG00000013331) #17	ENSCHYG00000013047	NOVA2 (ENSCHYG00000013004) #19	NANOS2 (ENSCHYG00000012987) #20	MYPOP (ENSCHYG00000012965) #21	IRF2BP1 (ENSCHYG00000012957) #22	FOXA3 (ENSCHYG00000012937) #23	SYMPK (ENSCHYG00000012597) #24	RSPH6A (ENSCHYG00000012525) #25	DMWD (ENSCHYG00000012422) #26	DMPK (ENSCHYG00000011768) #27	SIX5 (ENSCHYG00000011699) #28	MEIOSIN (ENSCHYG00000011599) #29	FBXO46 (ENSCHYG00000011575) #30	QPCTL (ENSCHYG00000011523) #31	SNRPD2 (ENSCHYG00000011477) #32	GIPR (ENSCHYG00000011385) #33	EML2 (ENSCHYG00000010342) #34	GPR4 (ENSCHYG00000010273) #35	ENSCHYG00000010242	OPA3 (ENSCHYG00000010190) #36
Percora_a	ANCESTRAL SPECIES	4	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Bovidae	ANCESTRAL SPECIES	4	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	3	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000157251.kb.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120.i #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Bos	ANCESTRAL SPECIES	4	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000157251.kb.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120.i #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Bos_b	ANCESTRAL SPECIES		ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000157251.kb.b	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120.i #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Cow	MODERN SPECIES	9	GNG8 (ENSBTAG00000017762)	PTGIR (ENSBTAG00000014585)	CALM3 (ENSBTAG00000014583)	CCDC8 (ENSBTAG00000018181) #9	PNMA8A (ENSBTAG00000009337) #7	PPP5C (ENSBTAG00000008014) #10	HIF3A (ENSBTAG00000018948) #11	IGFL1 (ENSBTAG00000000027) #12	ENSBTAG00000023367	PGLYRP1 (ENSBTAG00000002635) #17	CCDC61 (ENSBTAG00000005819) #18	NOVA2 (ENSBTAG00000013157) #19	NANOS2 (ENSBTAG00000047505) #20	ENSBTAG00000054722	MYPOP (ENSBTAG00000045708) #21	ENSBTAG00000050077 #22	FOXA3 (ENSBTAG00000012104) #23	SYMPK (ENSBTAG00000012101) #24	RSPH6A (ENSBTAG00000012097) #25	DMWD (ENSBTAG00000021417) #26	DMPK (ENSBTAG00000013347) #27	SIX5 (ENSBTAG00000013346) #28	FBXO46 (ENSBTAG00000048966) #30	QPCTL (ENSBTAG00000012176) #31	SNRPD2 (ENSBTAG00000012177) #32	GIPR (ENSBTAG00000005527) #33	EML2 (ENSBTAG00000015764) #34	GPR4 (ENSBTAG00000018398) #35	OPA3 (ENSBTAG00000019605) #36	ENSBTAG00000049026 #36	VASP (ENSBTAG00000019604) #37
Hybrid Bos Indicus	MODERN SPECIES	9	DACT3 (ENSBIXG00005024273)	GNG8 (ENSBIXG00005004139)	PTGIR (ENSBIXG00005024224)	CALM3 (ENSBIXG00005024193)	CCDC8 (ENSBIXG00005024071) #9	PNMA8A (ENSBIXG00005023944) #7	PPP5C (ENSBIXG00005023931) #10	HIF3A (ENSBIXG00005023842) #11	IGFL1 (ENSBIXG00005023661) #12	ENSBIXG00005023638	PGLYRP1 (ENSBIXG00005023625) #17	CCDC61 (ENSBIXG00005004038) #18	NOVA2 (ENSBIXG00005023501) #19	NANOS2 (ENSBIXG00005023479) #20	MYPOP (ENSBIXG00005023469) #21	ENSBIXG00005023453 #22	FOXA3 (ENSBIXG00005023439) #23	SYMPK (ENSBIXG00005023428) #24	RSPH6A (ENSBIXG00005023393) #25	DMWD (ENSBIXG00005023338) #26	DMPK (ENSBIXG00005003978) #27	SIX5 (ENSBIXG00005023223) #28	MEIOSIN (ENSBIXG00005023205) #29	FBXO46 (ENSBIXG00005003957) #30	QPCTL (ENSBIXG00005003947) #31	SNRPD2 (ENSBIXG00005006167) #32	GIPR (ENSBIXG00005023073) #33	EML2 (ENSBIXG00005022960) #34	ENSBIXG00005022571 #36	VASP (ENSBIXG00005022552) #37	PPM1N (ENSBIXG00005022517)
Bos_a	ANCESTRAL SPECIES	16	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120.i #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Domestic yak	MODERN SPECIES	12	PRKD2 (ENSBGRG00000017664)	DACT3 (ENSBGRG00000017786)	GNG8 (ENSBGRG00000017906)	PTGIR (ENSBGRG00000017949)	CALM3 (ENSBGRG00000018002)	CCDC8 (ENSBGRG00000018249) #9	PNMA8A (ENSBGRG00000018367) #7	PPP5C (ENSBGRG00000018431) #10	HIF3A (ENSBGRG00000018647) #11	IGFL1 (ENSBGRG00000019136) #12	PGLYRP1 (ENSBGRG00000019198) #17	CCDC61 (ENSBGRG00000019266) #18	NOVA2 (ENSBGRG00000019401) #19	NANOS2 (ENSBGRG00000019460) #20	MYPOP (ENSBGRG00000019478) #21	IRF2BP1 (ENSBGRG00000019522) #22	FOXA3 (ENSBGRG00000019533) #23	SYMPK (ENSBGRG00000019603) #24	RSPH6A (ENSBGRG00000019805) #25	DMWD (ENSBGRG00000019948) #26	SIX5 (ENSBGRG00000020815) #28	MEIOSIN (ENSBGRG00000020860) #29	FBXO46 (ENSBGRG00000020994) #30	QPCTL (ENSBGRG00000021008) #31	SNRPD2 (ENSBGRG00000021083) #32	GIPR (ENSBGRG00000021139) #33	EML2 (ENSBGRG00000021380) #34	GPR4 (ENSBGRG00000021757) #35	OPA3 (ENSBGRG00000021767) #36	VASP (ENSBGRG00000021830) #37	PPM1N (ENSBGRG00000021919)
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000162120.j #22
Bos	ANCESTRAL SPECIES	39	ENSGT00940000155339	ENSGT00940000153883.a.g.b	ENSGT00550000074964.i.a	ENSGT00940000155145.tb	ENSGT00390000002253.c.b	ENSGT00940000156123.b	ENSGT00710000106792.o	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00950000183069.b	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A	ENSGT00940000161322.e	ENSGT00940000161322.f.b.b	ENSGT00940000162120.j #22	ENSGT00940000162451	ENSGT00940000157297	ENSGT00940000157996	ENSGT00960000192752	ENSGT00390000014020	ENSGT00940000157196	ENSGT00390000002615.n	ENSGT00940000160111	ENSGT00940000159999	ENSGT00390000011174.a	ENSGT00390000008142.w	ENSGT00940000153737.a	ENSGT00940000161870	ENSGT00940000156455	ENSGT00940000160863
Bos_b	ANCESTRAL SPECIES	41	ENSGT00940000155145.tb	ENSGT00390000002253.c.b.b	ENSGT00390000002253.c.b.a	ENSGT00940000156123.b	ENSGT00710000106792.o	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00950000183069.b	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A	ENSGT00940000161322.e	ENSGT00940000161322.f.b.b	ENSGT00940000161322.f.b.a	ENSGT00390000012726	ENSGT00940000162120.j #22	ENSGT00940000162451	ENSGT00940000157297	ENSGT00940000157996	ENSGT00960000192752	ENSGT00390000014020	ENSGT00940000157196	ENSGT00390000002615.n	ENSGT00940000160111	ENSGT00940000159999	ENSGT00390000011174.a	ENSGT00390000008142.w	ENSGT00940000153737.a	ENSGT00940000161870	ENSGT00940000156455	ENSGT00940000160863
Hybrid Bos Indicus	MODERN SPECIES	315	SH2D1A (ENSBIXG00005019713)	ENSBIXG00005019727	TENM1 (ENSBIXG00005019874)	ENSBIXG00005002631	ENSBIXG00005019966	ENSBIXG00005006883	ENSBIXG00005003271	ENSBIXG00005020014	ENSBIXG00005020023	ENSBIXG00005003281	ENSBIXG00005003286	ENSBIXG00005003291	ENSBIXG00005003296	ENSBIXG00005020075	PRR32 (ENSBIXG00005020100)	ENSBIXG00005020132 #22	ACTRT1 (ENSBIXG00005003305)	SMARCA1 (ENSBIXG00005020268)	OCRL (ENSBIXG00005020341)	ENSBIXG00005020367	ENSBIXG00005003439	XPNPEP2 (ENSBIXG00005020458)	ENSBIXG00005020478	SASH3 (ENSBIXG00005020501)	ZDHHC9 (ENSBIXG00005020566)	ENSBIXG00005020599	ENSBIXG00005020703	BCORL1 (ENSBIXG00005020768)	ELF4 (ENSBIXG00005020826)	AIFM1 (ENSBIXG00005021020)	RAB33A (ENSBIXG00005021051)
Cow	MODERN SPECIES	177	C1GALT1C1 (ENSBTAG00000021410)	ENSBTAG00000038497	CT47B1 (ENSBTAG00000049471)	GRIA3 (ENSBTAG00000011833)	THOC2 (ENSBTAG00000008388)	XIAP (ENSBTAG00000040350)	STAG2 (ENSBTAG00000009121)	ENSBTAG00000052925	SH2D1A (ENSBTAG00000026067)	TENM1 (ENSBTAG00000018819)	ENSBTAG00000046796	ENSBTAG00000022399	ENSBTAG00000054321	ENSBTAG00000054511	PRR32 (ENSBTAG00000008763)	ENSBTAG00000000154 #22	ACTRT1 (ENSBTAG00000047701)	SMARCA1 (ENSBTAG00000002292)	OCRL (ENSBTAG00000018247)	ENSBTAG00000053073	APLN (ENSBTAG00000019993)	XPNPEP2 (ENSBTAG00000010345)	ENSBTAG00000026011	SASH3 (ENSBTAG00000002041)	ZDHHC9 (ENSBTAG00000015354)	ENSBTAG00000046395	UTP14A (ENSBTAG00000013671)	BCORL1 (ENSBTAG00000004962)	ELF4 (ENSBTAG00000019061)	AIFM1 (ENSBTAG00000006838)	RAB33A (ENSBTAG00000034712)
Bos_a	ANCESTRAL SPECIES	64			ENSGT00390000002253.c.a.a.a.a	ENSGT00940000156123.b	ENSGT00710000106792.o	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00950000183069.b	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000161768.A	ENSGT00940000161322.e	ENSGT00940000161322.f.b.b	ENSGT00940000161322.f.a.a	ENSGT00390000012726	ENSGT00940000162120.j #22	ENSGT00940000162451	ENSGT00940000157297	ENSGT00940000157996	ENSGT00960000192752	ENSGT00390000014020	ENSGT00940000157196	ENSGT00390000002615.n	ENSGT00940000160111	ENSGT00940000159999	ENSGT00390000011174.a	ENSGT00390000008142.w	ENSGT00940000153737.a	ENSGT00940000161870	ENSGT00940000156455	ENSGT00940000160863
Wild yak	MODERN SPECIES	1288																ENSBMUG00000007764 #22	ACTRT1 (ENSBMUG00000007770)
American bison	MODERN SPECIES	3227	PRKD2 (ENSBBBG00000007407)	ENSBBBG00000014572	GNG8 (ENSBBBG00000007169)	PTGIR (ENSBBBG00000014585)	CALM3 (ENSBBBG00000014637)	CCDC8 (ENSBBBG00000007256) #9	PNMA8A (ENSBBBG00000014698) #7	PPP5C (ENSBBBG00000014726) #10	HIF3A (ENSBBBG00000014756) #11	IGFL1 (ENSBBBG00000014765) #12	ENSBBBG00000009057	PGLYRP1 (ENSBBBG00000006949) #17	CCDC61 (ENSBBBG00000002834) #18	NOVA2 (ENSBBBG00000014819) #19	NANOS2 (ENSBBBG00000014825) #20	IRF2BP1 (ENSBBBG00000014836) #22	FOXA3 (ENSBBBG00000014845) #23	SYMPK (ENSBBBG00000014863) #24	RSPH6A (ENSBBBG00000003680) #25	DMWD (ENSBBBG00000001216) #26	DMPK (ENSBBBG00000001064) #27	ENSBBBG00000001050 #28	MEIOSIN (ENSBBBG00000001018) #29	FBXO46 (ENSBBBG00000001009) #30	QPCTL (ENSBBBG00000000961) #31	SNRPD2 (ENSBBBG00000000935) #32	GIPR (ENSBBBG00000000834) #33	EML2 (ENSBBBG00000014978) #34	GPR4 (ENSBBBG00000003575) #35	OPA3 (ENSBBBG00000003720) #36	VASP (ENSBBBG00000015011) #37
Caprinae	ANCESTRAL SPECIES	4	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37	ENSGT00940000162694
Goat	MODERN SPECIES	9	PRKD2 (ENSCHIG00000021220)	DACT3 (ENSCHIG00000021818)	GNG8 (ENSCHIG00000018099)	PTGIR (ENSCHIG00000016612)	CALM3 (ENSCHIG00000011296)	CCDC8 (ENSCHIG00000010061) #9	ENSCHIG00000026916	PPP5C (ENSCHIG00000024557) #10	HIF3A (ENSCHIG00000018939) #11	IGFL1 (ENSCHIG00000023173) #12	PGLYRP1 (ENSCHIG00000013020) #17	CCDC61 (ENSCHIG00000024140) #18	NOVA2 (ENSCHIG00000010547) #19	NANOS2 (ENSCHIG00000012637) #20	MYPOP (ENSCHIG00000019016) #21	IRF2BP1 (ENSCHIG00000002525) #22	FOXA3 (ENSCHIG00000011232) #23	SYMPK (ENSCHIG00000026784) #24	RSPH6A (ENSCHIG00000012473) #25	DMWD (ENSCHIG00000023485) #26	DMPK (ENSCHIG00000015894) #27	SIX5 (ENSCHIG00000022800) #28	FBXO46 (ENSCHIG00000008535) #30	QPCTL (ENSCHIG00000027222) #31	ENSCHIG00000015755 #32	GIPR (ENSCHIG00000020718) #33	EML2 (ENSCHIG00000013582) #34	GPR4 (ENSCHIG00000005655) #35	ENSCHIG00000010098	OPA3 (ENSCHIG00000017112) #36	VASP (ENSCHIG00000012132) #37
Siberian musk deer	MODERN SPECIES	124	GNG8 (ENSMMSG00000002075)	PTGIR (ENSMMSG00000002087)	CALM3 (ENSMMSG00000002115)	ENSMMSG00000002162 #9	ENSMMSG00000002170 #9	PPP5C (ENSMMSG00000002194) #10	HIF3A (ENSMMSG00000002239) #11	ENSMMSG00000002309	IGFL1 (ENSMMSG00000002324) #12	PGLYRP1 (ENSMMSG00000002338) #17	CCDC61 (ENSMMSG00000002366) #18	NOVA2 (ENSMMSG00000002415) #19	NANOS2 (ENSMMSG00000002428) #20	ENSMMSG00000002435	MYPOP (ENSMMSG00000002452) #21	IRF2BP1 (ENSMMSG00000002468) #22	FOXA3 (ENSMMSG00000002476) #23	SYMPK (ENSMMSG00000002514) #24	RSPH6A (ENSMMSG00000002561) #25	DMWD (ENSMMSG00000002577) #26	DMPK (ENSMMSG00000002626) #27	SIX5 (ENSMMSG00000002869) #28	FBXO46 (ENSMMSG00000002912) #30	QPCTL (ENSMMSG00000002929) #31	ENSMMSG00000002952 #32	GIPR (ENSMMSG00000002994) #33	EML2 (ENSMMSG00000003108) #34	GPR4 (ENSMMSG00000003234) #35	OPA3 (ENSMMSG00000003240) #36	ENSMMSG00000003249	VASP (ENSMMSG00000003264) #37
Camelidae	ANCESTRAL SPECIES	15	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00990000210495	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Arabian camel	MODERN SPECIES	35	ENSCDRG00005012438	PTGIR (ENSCDRG00005012366)	CALM3 (ENSCDRG00005012287)	CCDC8 (ENSCDRG00005012268) #9	PNMA8C (ENSCDRG00005012241) #8	PNMA8A (ENSCDRG00005012183) #7	PPP5C (ENSCDRG00005011852) #10	HIF3A (ENSCDRG00005011604) #11	IGFL1 (ENSCDRG00005011529) #12	PGLYRP1 (ENSCDRG00005011474) #17	CCDC61 (ENSCDRG00005011347) #18	NOVA2 (ENSCDRG00005011316) #19	ENSCDRG00005011302 #20	ENSCDRG00005011280	MYPOP (ENSCDRG00005011260) #21	IRF2BP1 (ENSCDRG00005011195) #22	FOXA3 (ENSCDRG00005011166) #23	SYMPK (ENSCDRG00005011023) #24	RSPH6A (ENSCDRG00005010837) #25	DMWD (ENSCDRG00005010785) #26	DMPK (ENSCDRG00005010303) #27	ENSCDRG00005010261 #28	ENSCDRG00005010165	MEIOSIN (ENSCDRG00005010033) #29	FBXO46 (ENSCDRG00005010007) #30	QPCTL (ENSCDRG00005009916) #31	SNRPD2 (ENSCDRG00005009839) #32	GIPR (ENSCDRG00005009575) #33	EML2 (ENSCDRG00005008817) #34	GPR4 (ENSCDRG00005008750) #35	OPA3 (ENSCDRG00005008699) #36
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B #16	ENSGT00390000009557.C #12	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Carnivora	ANCESTRAL SPECIES	2	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Caniformia	ANCESTRAL SPECIES	1	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Ursidae	ANCESTRAL SPECIES	30	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000164310.e	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Ursus	ANCESTRAL SPECIES	13	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000164310.e	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
American black bear	MODERN SPECIES	654														NANOS2 (ENSUAMG00000023170) #20	ENSUAMG00000023169	IRF2BP1 (ENSUAMG00000023168) #22	FOXA3 (ENSUAMG00000023167) #23	SYMPK (ENSUAMG00000022272) #24	RSPH6A (ENSUAMG00000022261) #25	ENSUAMG00000022260 #26	DMPK (ENSUAMG00000022218) #27	SIX5 (ENSUAMG00000022217) #28	MEIOSIN (ENSUAMG00000022216) #29
Giant Panda	MODERN SPECIES	3	ENSAMEG00000026303	GNG8 (ENSAMEG00000008557)	ENSAMEG00000008560	ENSAMEG00000029734	ENSAMEG00000024569 #9	ENSAMEG00000024067 #8	ENSAMEG00000029960 #7	ENSAMEG00000008577 #10	HIF3A (ENSAMEG00000008615) #11	ENSAMEG00000008655 #16	PGLYRP1 (ENSAMEG00000000626) #17	CCDC61 (ENSAMEG00000000629) #18	NANOS2 (ENSAMEG00000000660) #20	ENSAMEG00000027611	MYPOP (ENSAMEG00000025217) #21	IRF2BP1 (ENSAMEG00000029242) #22	FOXA3 (ENSAMEG00000031395) #23	SYMPK (ENSAMEG00000000680) #24	DMWD (ENSAMEG00000026871) #26	DMPK (ENSAMEG00000000775) #27	SIX5 (ENSAMEG00000025878) #28	ENSAMEG00000027887 #29	FBXO46 (ENSAMEG00000025250) #30	QPCTL (ENSAMEG00000000797) #31	ENSAMEG00000000818 #32	GIPR (ENSAMEG00000000819) #33	EML2 (ENSAMEG00000000872) #34	GPR4 (ENSAMEG00000030728) #35	ENSAMEG00000012385	VASP (ENSAMEG00000000957) #37	PPM1N (ENSAMEG00000012379)
Mustelinae	ANCESTRAL SPECIES	7	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Ferret	MODERN SPECIES	291	PRKD2 (ENSMPUG00000005234)	ENSMPUG00000005246	GNG8 (ENSMPUG00000005250)	PTGIR (ENSMPUG00000005257)	CALM3 (ENSMPUG00000005261)	CCDC8 (ENSMPUG00000019370) #9	PNMA8A (ENSMPUG00000005271) #7	PPP5C (ENSMPUG00000005275) #10	HIF3A (ENSMPUG00000005285) #11	ENSMPUG00000005385 #16	PGLYRP1 (ENSMPUG00000005395) #17	CCDC61 (ENSMPUG00000005428) #18	NOVA2 (ENSMPUG00000005444) #19	NANOS2 (ENSMPUG00000019371) #20	MYPOP (ENSMPUG00000005494) #21	IRF2BP1 (ENSMPUG00000019372) #22	FOXA3 (ENSMPUG00000005501) #23	SYMPK (ENSMPUG00000005505) #24	RSPH6A (ENSMPUG00000005534) #25	DMWD (ENSMPUG00000005593) #26	DMPK (ENSMPUG00000005629) #27	SIX5 (ENSMPUG00000005715) #28	MEIOSIN (ENSMPUG00000005720) #29	FBXO46 (ENSMPUG00000019374) #30	QPCTL (ENSMPUG00000005727) #31	SNRPD2 (ENSMPUG00000005733) #32	GIPR (ENSMPUG00000005756) #33	EML2 (ENSMPUG00000005855) #34	OPA3 (ENSMPUG00000005872) #36	VASP (ENSMPUG00000005880) #37	PPM1N (ENSMPUG00000005895)
American mink	MODERN SPECIES	135	CALM3 (ENSNVIG00000009664)	ENSNVIG00000009652 ##7	CCDC8 (ENSNVIG00000009649) #9	C9JTH8 (ENSNVIG00000009647) #8	PNMA8A (ENSNVIG00000009641) #7	PPP5C (ENSNVIG00000009605) #10	HIF3A (ENSNVIG00000009557) #11	ENSNVIG00000009514 #16	ENSNVIG00000009504 #16	PGLYRP1 (ENSNVIG00000009479) #17	CCDC61 (ENSNVIG00000009441) #18	NOVA2 (ENSNVIG00000009425) #19	NANOS2 (ENSNVIG00000009419) #20	ENSNVIG00000009418	MYPOP (ENSNVIG00000009413) #21	IRF2BP1 (ENSNVIG00000009402) #22	FOXA3 (ENSNVIG00000009388) #23	SYMPK (ENSNVIG00000009342) #24	RSPH6A (ENSNVIG00000009330) #25	DMWD (ENSNVIG00000009289) #26	DMPK (ENSNVIG00000009169) #27	SIX5 (ENSNVIG00000009150) #28	MEIOSIN (ENSNVIG00000009144) #29	FBXO46 (ENSNVIG00000009137) #30	QPCTL (ENSNVIG00000009114) #31	SNRPD2 (ENSNVIG00000009077) #32	GIPR (ENSNVIG00000009001) #33	EML2 (ENSNVIG00000008942) #34	GPR4 (ENSNVIG00000008931) #35	OPA3 (ENSNVIG00000008924) #36	VASP (ENSNVIG00000008886) #37
Canidae	ANCESTRAL SPECIES	5	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Canis_lupus	ANCESTRAL SPECIES		ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Dog	MODERN SPECIES		ENSCAFG00845003424	DACT3 (ENSCAFG00845003449)	GNG8 (ENSCAFG00845003458)	ENSCAFG00845004281	ENSCAFG00845004289 #9	ENSCAFG00845004294 #8	ENSCAFG00845004299 #7	ENSCAFG00845004375 #10	HIF3A (ENSCAFG00845004467) #11	ENSCAFG00845004529 #16	ENSCAFG00845004536	PGLYRP1 (ENSCAFG00845004551) #17	CCDC61 (ENSCAFG00845004579) #18	NOVA2 (ENSCAFG00845004618) #19	NANOS2 (ENSCAFG00845004625) #20	IRF2BP1 (ENSCAFG00845004633) #22	FOXA3 (ENSCAFG00845004638) #23	SYMPK (ENSCAFG00845004681) #24	DMWD (ENSCAFG00845004767) #26	DMPK (ENSCAFG00845004793) #27	SIX5 (ENSCAFG00845004815) #28	MEIOSIN (ENSCAFG00845004838) #29	FBXO46 (ENSCAFG00845004849) #30	QPCTL (ENSCAFG00845004866) #31	GIPR (ENSCAFG00845004894) #33	EML2 (ENSCAFG00845004953) #34	GPR4 (ENSCAFG00845005035) #35	OPA3 (ENSCAFG00845005041) #36	VASP (ENSCAFG00845005094) #37	PPM1N (ENSCAFG00845005133)	RTN2 (ENSCAFG00845005157)
Dingo	MODERN SPECIES	125	PTGIR (ENSCAFG00020001637)	ENSCAFG00020001643	CCDC8 (ENSCAFG00020001658) #9	PNMA8C (ENSCAFG00020001664) #8	PNMA8A (ENSCAFG00020001670) #7	PPP5C (ENSCAFG00020001676) #10	HIF3A (ENSCAFG00020001684) #11	ENSCAFG00020001697	ENSCAFG00020001734 #16	PGLYRP1 (ENSCAFG00020001739) #17	CCDC61 (ENSCAFG00020001761) #18	NOVA2 (ENSCAFG00020001763) #19	NANOS2 (ENSCAFG00020001772) #20	ENSCAFG00020001778	MYPOP (ENSCAFG00020001794) #21	IRF2BP1 (ENSCAFG00020001798) #22	FOXA3 (ENSCAFG00020001802) #23	SYMPK (ENSCAFG00020001815) #24	RSPH6A (ENSCAFG00020001834) #25	DMWD (ENSCAFG00020001886) #26	DMPK (ENSCAFG00020002021) #27	SIX5 (ENSCAFG00020003514) #28	MEIOSIN (ENSCAFG00020003516) #29	FBXO46 (ENSCAFG00020003524) #30	QPCTL (ENSCAFG00020003527) #31	ENSCAFG00020003532 #32	GIPR (ENSCAFG00020003543) #33	EML2 (ENSCAFG00020003779) #34	GPR4 (ENSCAFG00020011193) #35	OPA3 (ENSCAFG00020011195) #36	ENSCAFG00020011202 #37
Red fox	MODERN SPECIES	101	GNG8 (ENSVVUG00000002757)	PTGIR (ENSVVUG00000002758)	CALM1 (ENSVVUG00000002762)	CCDC8 (ENSVVUG00000002765) #9	PNMA8C (ENSVVUG00000002766) #8	PNMA8A (ENSVVUG00000002767) #7	PPP5C (ENSVVUG00000002773) #10	HIF3A (ENSVVUG00000002779) #11	ENSVVUG00000002866 #16	PGLYRP1 (ENSVVUG00000002874) #17	CCDC61 (ENSVVUG00000002894) #18	ENSVVUG00000002971 #19	NANOS2 (ENSVVUG00000002993) #20	ENSVVUG00000002998	MYPOP (ENSVVUG00000003001) #21	IRF2BP1 (ENSVVUG00000003011) #22	FOXA3 (ENSVVUG00000003017) #23	SYMPK (ENSVVUG00000003024) #24	RSPH6A (ENSVVUG00000003045) #25	DMWD (ENSVVUG00000003082) #26	DMPK (ENSVVUG00000003094) #27	SIX5 (ENSVVUG00000003131) #28	MEIOSIN (ENSVVUG00000003147) #29	FBXO46 (ENSVVUG00000003160) #30	QPCTL (ENSVVUG00000003169) #31	ENSVVUG00000003181 #32	GIPR (ENSVVUG00000003197) #33	EML2 (ENSVVUG00000003317) #34	GPR4 (ENSVVUG00000004011) #35	OPA3 (ENSVVUG00000004015) #36	ENSVVUG00000004018 #36
Felidae	ANCESTRAL SPECIES	7	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Panthera	ANCESTRAL SPECIES	20	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Panthera_a	ANCESTRAL SPECIES	22	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.a #9	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.b.a #7	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.B.a.b #16	ENSGT00390000009557.B.a.a #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37	ENSGT00940000162694
lion	MODERN SPECIES	15	DACT3 (ENSPLOG00000005799)	GNG8 (ENSPLOG00000005773)	PTGIR (ENSPLOG00000005755)	CALM3 (ENSPLOG00000005689)	PNMA8C (ENSPLOG00000005649) #8	PNMA8A (ENSPLOG00000005626) #7	PPP5C (ENSPLOG00000005583) #10	HIF3A (ENSPLOG00000005534) #11	ENSPLOG00000005466 #16	ENSPLOG00000021927 #16	PGLYRP1 (ENSPLOG00000021909) #17	CCDC61 (ENSPLOG00000021860) #18	NOVA2 (ENSPLOG00000021834) #19	NANOS2 (ENSPLOG00000021823) #20	MYPOP (ENSPLOG00000021806) #21	IRF2BP1 (ENSPLOG00000021798) #22	FOXA3 (ENSPLOG00000021787) #23	SYMPK (ENSPLOG00000021677) #24	RSPH6A (ENSPLOG00000021574) #25	DMWD (ENSPLOG00000021521) #26	DMPK (ENSPLOG00000021360) #27	ENSPLOG00000021304	FBXO46 (ENSPLOG00000021240) #30	QPCTL (ENSPLOG00000021202) #31	SNRPD2 (ENSPLOG00000021167) #32	GIPR (ENSPLOG00000020929) #33	EML2 (ENSPLOG00000020666) #34	GPR4 (ENSPLOG00000020587) #35	OPA3 (ENSPLOG00000020572) #36	VASP (ENSPLOG00000020525) #37	PPM1N (ENSPLOG00000020494)
Tiger	MODERN SPECIES	494									PPP5C (ENSPTIG00000015154) #10	HIF3A (ENSPTIG00000015179) #11	ENSPTIG00000015297 #16	ENSPTIG00000015313 #16	CCDC61 (ENSPTIG00000015320) #18	NOVA2 (ENSPTIG00000015368) #19	NANOS2 (ENSPTIG00000015372) #20	ENSPTIG00000007993 #22	SYMPK (ENSPTIG00000015420) #24	RSPH6A (ENSPTIG00000015641) #25	DMPK (ENSPTIG00000015873) #27	ENSPTIG00000016086 #28	MEIOSIN (ENSPTIG00000016102) #29
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Chiroptera	ANCESTRAL SPECIES	16	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Megabat	MODERN SPECIES	470														NANOS2 (ENSPVAG00000001363) #20	MYPOP (ENSPVAG00000001362) #21	IRF2BP1 (ENSPVAG00000001361) #22	FOXA3 (ENSPVAG00000001359) #23	SYMPK (ENSPVAG00000001355) #24	RSPH6A (ENSPVAG00000001354) #25	DMWD (ENSPVAG00000001352) #26	DMPK (ENSPVAG00000001349) #27	SIX5 (ENSPVAG00000001347) #28	QPCTL (ENSPVAG00000001346) #31	SNRPD2 (ENSPVAG00000001345) #32	GIPR (ENSPVAG00000001343) #33	EML2 (ENSPVAG00000001340) #34	GPR4 (ENSPVAG00000001339) #35	OPA3 (ENSPVAG00000001338) #36	VASP (ENSPVAG00000001336) #37	ENSPVAG00000001335	PPM1N (ENSPVAG00000001334)
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Greater horseshoe bat	MODERN SPECIES	6	CALM3 (ENSRFEG00010011490)	PNMA8B (ENSRFEG00010011467) ##7	PNMA8C (ENSRFEG00010011452) #8	PPP5C (ENSRFEG00010011335) #10	HIF3A (ENSRFEG00010010703) #11	IGFL1 (ENSRFEG00010010615) #12	ENSRFEG00010010556 #16	ENSRFEG00010010514 #16	IGFL4 (ENSRFEG00010010411) #16	PGLYRP1 (ENSRFEG00010010376) #17	CCDC61 (ENSRFEG00010010279) #18	NOVA2 (ENSRFEG00010010242) #19	NANOS2 (ENSRFEG00010010225) #20	ENSRFEG00010010211	MYPOP (ENSRFEG00010010173) #21	IRF2BP1 (ENSRFEG00010010157) #22	FOXA3 (ENSRFEG00010010122) #23	SYMPK (ENSRFEG00010010076) #24	RSPH6A (ENSRFEG00010009900) #25	DMWD (ENSRFEG00010009798) #26	DMPK (ENSRFEG00010009224) #27	SIX5 (ENSRFEG00010009093) #28	MEIOSIN (ENSRFEG00010009004) #29	QPCTL (ENSRFEG00010008930) #31	ENSRFEG00010008870 #32	GIPR (ENSRFEG00010008371) #33	EML2 (ENSRFEG00010007875) #34	GPR4 (ENSRFEG00010007847) #35	OPA3 (ENSRFEG00010007786) #36	VASP (ENSRFEG00010007608) #37	RTN2 (ENSRFEG00010007128)
Equus	ANCESTRAL SPECIES	1	ENSGT01030000234522.C.b.e.b.a.a.b #8	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00940000161006.h #17	ENSGT00390000009557.C.j #12	ENSGT00390000009557.C.i.a #12	ENSGT01100000263517.b.d.m.a.a.a.b	ENSGT00390000009557.C.i.b #12	ENSGT00940000161006.g #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608.b #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Donkey	MODERN SPECIES	18	ENSEASG00005024649 #7	CCDC8 (ENSEASG00005031475) #9	PNMA8C (ENSEASG00005004006) #8	PPP5C (ENSEASG00005003995) #10	HIF3A (ENSEASG00005003993) #11	ENSEASG00005029977 #17	ENSEASG00005032964 #12	ENSEASG00005003990	ENSEASG00005003991 #12	ENSEASG00005025557 #17	CCDC61 (ENSEASG00005027854) #18	NOVA2 (ENSEASG00005038406) #19	NANOS2 (ENSEASG00005014235) #20	ENSEASG00005014234	MYPOP (ENSEASG00005028554) #21	IRF2BP1 (ENSEASG00005014232) #22	FOXA3 (ENSEASG00005037896) #23	SYMPK (ENSEASG00005014227) #24	RSPH6A (ENSEASG00005014225) #25	DMWD (ENSEASG00005014223) #26	DMPK (ENSEASG00005014220) #27	SIX5 (ENSEASG00005014218) #28	MEIOSIN (ENSEASG00005014215) #29	FBXO46 (ENSEASG00005029424) #30	QPCTL (ENSEASG00005014212) #31	ENSEASG00005014210 #32	GIPR (ENSEASG00005014208) #33	EML2 (ENSEASG00005014204) #34	GPR4 (ENSEASG00005028869) #35	ENSEASG00005028592 #36	VASP (ENSEASG00005014200) #37
Horse	MODERN SPECIES	1	PNMA8A (ENSECAG00000006115) #7	PNMA8C (ENSECAG00000034552) #8	CCDC8 (ENSECAG00000056835) #9	PPP5C (ENSECAG00000056298) #10	HIF3A (ENSECAG00000020693) #11	ENSECAG00000012503 #12	ENSECAG00000016992 #12	ENSECAG00000012514	ENSECAG00000029300 #12	ENSECAG00000039739 #17	ENSECAG00000032321 #17	CCDC61 (ENSECAG00000009015) #18	NOVA2 (ENSECAG00000024041) #19	ENSECAG00000054420	NANOS2 (ENSECAG00000006033) #20	IRF2BP1 (ENSECAG00000005987) #22	FOXA3 (ENSECAG00000005936) #23	SYMPK (ENSECAG00000008163) #24	RSPH6A (ENSECAG00000019005) #25	DMPK (ENSECAG00000016750) #27	MEIOSIN (ENSECAG00000036481) #29	FBXO46 (ENSECAG00000032958) #30	QPCTL (ENSECAG00000009265) #31	SNRPD2 (ENSECAG00000007824) #32	GIPR (ENSECAG00000015923) #33	EML2 (ENSECAG00000018032) #34	GPR4 (ENSECAG00000045714) #35	OPA3 (ENSECAG00000014284) #36	VASP (ENSECAG00000007818) #37	PPM1N (ENSECAG00000005419)	RTN2 (ENSECAG00000022897)
Atlantogenata	ANCESTRAL SPECIES	48	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT01030000234522.C.b.f.b.b ##7	ENSGT01030000234522.C.b.f.b.a #7	ENSGT01030000234522.C.b.f.a #9	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT00390000009557.C #12	ENSGT00390000009557.B #16	ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37
Xenarthra	ANCESTRAL SPECIES	122											ENSGT00940000161006 #17	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36	ENSGT00940000156765 #37	ENSGT00940000160599
Armadillo	MODERN SPECIES	4293											PGLYRP1 (ENSDNOG00000033764) #17	CCDC61 (ENSDNOG00000023673) #18	NOVA2 (ENSDNOG00000031258) #19	NANOS2 (ENSDNOG00000044718) #20	MYPOP (ENSDNOG00000044809) #21	IRF2BP1 (ENSDNOG00000016864) #22	FOXA3 (ENSDNOG00000032062) #23	SYMPK (ENSDNOG00000016149) #24	RSPH6A (ENSDNOG00000016145) #25	ENSDNOG00000047818 #27	ENSDNOG00000037350 #27	SIX5 (ENSDNOG00000035763) #28	MEIOSIN (ENSDNOG00000037324) #29	FBXO46 (ENSDNOG00000032421) #30	ENSDNOG00000046083 #31	SNRPD2 (ENSDNOG00000002365) #32	ENSDNOG00000037844 #33	EML2 (ENSDNOG00000046547) #34	GPR4 (ENSDNOG00000043810) #35	OPA3 (ENSDNOG00000034189) #36	VASP (ENSDNOG00000023706) #37
Marsupialia	ANCESTRAL SPECIES	20	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Diprotodontia	ANCESTRAL SPECIES	58	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
Wallaby	MODERN SPECIES	13480																IRF2BP1 (ENSMEUG00000000420) #22
Diprotodontia_a	ANCESTRAL SPECIES	56	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b	ENSGT01100000263497.D	ENSGT01050000244902.b.d	ENSGT00950000182980.a.b.a.a.a	ENSGT00940000158785 #10	ENSGT00940000161745 #11	ENSGT01100000263534.b.k.a.a.b.a.c.a.b	ENSGT00940000161006 #17	ENSGT00940000171396	ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00950000183135.A.a #20	ENSGT00450000040421 #21	ENSGT00860000136302	ENSGT00940000162120 #22	ENSGT00940000162453 #23	ENSGT00390000017045 #24	ENSGT00500000044869.a.b #25	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00570000080851 #29	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00390000017608 #32	ENSGT00940000161988 #33	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00390000009795 #36
koala	MODERN SPECIES	398									ENSPCIG00000009953	ENSPCIG00000022769 #17	CCDC61 (ENSPCIG00000032572) #18	NOVA2 (ENSPCIG00000007632) #19	ENSPCIG00000007637 #20	ENSPCIG00000036648 #21	ENSPCIG00000007640	IRF2BP1 (ENSPCIG00000007642) #22	FOXA3 (ENSPCIG00000007644) #23	SYMPK (ENSPCIG00000024476) #24	RSPH6A (ENSPCIG00000024486) #25	DMWD (ENSPCIG00000022992) #26	DMPK (ENSPCIG00000022991) #27	SIX5 (ENSPCIG00000022990) #28	ENSPCIG00000022989 #29	FBXO46 (ENSPCIG00000022988) #30	QPCTL (ENSPCIG00000022987) #31	SNRPD2 (ENSPCIG00000022986) #32	GIPR (ENSPCIG00000022980) #33	EML2 (ENSPCIG00000022971) #34	GPR4 (ENSPCIG00000022968) #35	OPA3 (ENSPCIG00000037324) #36	VASP (ENSPCIG00000022959) #37
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1158	ENSVURG00010021686	ENSVURG00010021679	ENSVURG00010021676	ENSVURG00010021665	ENSVURG00010021653 #10	ENSVURG00010021638 #11	ENSVURG00010021566	ENSVURG00010021545	ENSVURG00010021540	ENSVURG00010021538 #17	ENSVURG00010021533	ENSVURG00010021526 #18	ENSVURG00010021522 #19	ENSVURG00010021516 #20	ENSVURG00010021512 #21	ENSVURG00010021509 #22	ENSVURG00010021505 #23	ENSVURG00010021491 #24	ENSVURG00010021485 #25	ENSVURG00010021481 #26	ENSVURG00010021471 #27	ENSVURG00010021465 #28	ENSVURG00010021462 #30	ENSVURG00010021459 #31	ENSVURG00010021455 #32	ENSVURG00010021450 #33	ENSVURG00010021446	ENSVURG00010021438 #34	ENSVURG00010021437 #35	ENSVURG00010021434 #36	ENSVURG00010021427 #37
Common wonbat	MODERN SPECIES	1158	ENSVURG00010006016	ENSVURG00010005880	ENSVURG00010005864	ENSVURG00010005861	ENSVURG00010005854	ENSVURG00010004809 #10	ENSVURG00010004727 #11	ENSVURG00010004291	ENSVURG00010004245	ENSVURG00010004241	ENSVURG00010004231 #17	ENSVURG00010004226 #18	ENSVURG00010004223 #19	ENSVURG00010004212 #20	ENSVURG00010004210 #21	ENSVURG00010004203 #22	ENSVURG00010004196 #23	ENSVURG00010004161 #24	ENSVURG00010004141 #25	ENSVURG00010004126 #26	ENSVURG00010004121 #27	ENSVURG00010004112 #28	ENSVURG00010004100 #30	ENSVURG00010004092 #31	ENSVURG00010004074 #32	ENSVURG00010004012 #33	ENSVURG00010003997	ENSVURG00010003972 #34	ENSVURG00010003964 #35	ENSVURG00010003961 #36	ENSVURG00010003948 #37
Opossum	MODERN SPECIES	3	ENSMODG00000047896	ENSMODG00000005770	ENSMODG00000005802	UTS2 (ENSMODG00000047454)	ENSMODG00000017706	ENSMODG00000020046	ENSMODG00000036417	ENSMODG00000038293	ENSMODG00000023670	ENSMODG00000021519	PGLYRP1 (ENSMODG00000021527) #17	ENSMODG00000021528 #18	ENSMODG00000050472 #19	NANOS2 (ENSMODG00000048699) #20	MYPOP (ENSMODG00000021531) #21	IRF2BP1 (ENSMODG00000021532) #22	FOXA3 (ENSMODG00000021533) #23	SYMPK (ENSMODG00000021534) #24	ENSMODG00000021535 #27	SIX5 (ENSMODG00000041693) #28	ENSMODG00000045504 #29	FBXO46 (ENSMODG00000028665) #30	QPCTL (ENSMODG00000021538) #31	SNRPD2 (ENSMODG00000021539) #32	GIPR (ENSMODG00000021540) #33	ENSMODG00000044027	EML2 (ENSMODG00000021541) #34	GPR4 (ENSMODG00000023661) #35	OPA3 (ENSMODG00000021542) #36	RTN2 (ENSMODG00000021544)	FOSB (ENSMODG00000021545)
Sauria	ANCESTRAL SPECIES	54											ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745 #11	ENSGT00940000158785 #10	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Archelosauria	ANCESTRAL SPECIES	33	ENSGT01090000261113	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765 #37	ENSGT00390000009795 #36	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000153887.B #34	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745 #11	ENSGT00940000158785 #10	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Cryptodira	ANCESTRAL SPECIES	35	ENSGT00390000009795 #36	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000153887.B #34	ENSGT00390000010750.b	ENSGT00390000000190	ENSGT00940000156783	ENSGT00940000157969	ENSGT00940000161850	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745 #11	ENSGT00940000158785 #10	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Testudinoidea	ANCESTRAL SPECIES	30	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765 #37	ENSGT00390000009795 #36	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000153887.B #34	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000161006.l.a #17	ENSGT00940000161006.l.b #17	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604.d	ENSGT00940000161745 #11	ENSGT00940000158785 #10	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Emydidae	ANCESTRAL SPECIES	77	ENSGT00940000163913	ENSGT00940000160551	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000153887.B #34	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000161006.l.a.b #17	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203
painted turtle	MODERN SPECIES	1590														ENSCPBG00000004872	MYPOP (ENSCPBG00000004878) #21	IRF2BP1 (ENSCPBG00000004882) #22	ENSCPBG00000004894
Three-toed box turtle	MODERN SPECIES	252	ENSTMTG00000006897	CKM (ENSTMTG00000006864)	ENSTMTG00000006854	ENSTMTG00000006830	EXOC3L2 (ENSTMTG00000006808)	ENSTMTG00000006798	FOSB (ENSTMTG00000006785)	ENSTMTG00000006752	EML2 (ENSTMTG00000003755) #34	ENSTMTG00000003421	ENSTMTG00000003409 #30	QPCTL (ENSTMTG00000003398) #31	ENSTMTG00000003368	NOVA2 (ENSTMTG00000003357) #19	MYPOP (ENSTMTG00000003346) #21	IRF2BP1 (ENSTMTG00000003331) #22	ENSTMTG00000008031	SYMPK (ENSTMTG00000007982) #24	DMWD (ENSTMTG00000007911) #26	ENSTMTG00000007894	ENSTMTG00000007873	SNRPD2 (ENSTMTG00000007862) #32	ENSTMTG00000007849	HIF3A (ENSTMTG00000007833) #11	PPP5C (ENSTMTG00000007809) #10	PTGIR (ENSTMTG00000007799)	GNG8 (ENSTMTG00000007787)	ENSTMTG00000007764	ENSTMTG00000007750	PRKD2 (ENSTMTG00000007272)	STRN4 (ENSTMTG00000006957)
Testudinidae	ANCESTRAL SPECIES	36	ENSGT00940000156070.b	ENSGT00940000156765 #37	ENSGT00390000009795 #36	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000153887.B #34	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000161006.l.a #17	ENSGT00940000162008	ENSGT00940000161006.l.b #17	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000180177	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604.d	ENSGT00940000161745 #11	ENSGT00940000158785 #10	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d
Abingdon island giant tortoise	MODERN SPECIES	2009	ENSCABG00000008061 #37	ENSCABG00000008063	EML2 (ENSCABG00000008161) #34	ENSCABG00000013274	QPCTL (ENSCABG00000013296) #31	ENSCABG00000013500 #17	ENSCABG00000013501 #17	PRLHR (ENSCABG00000013502)	ENSCABG00000013503 #17	CCDC61 (ENSCABG00000013504) #18	ENSCABG00000013505	ENSCABG00000013507 #20	NOVA2 (ENSCABG00000013508) #19	MYPOP (ENSCABG00000013509) #21	ENSCABG00000013510	IRF2BP1 (ENSCABG00000013511) #22	ENSCABG00000013512	SYMPK (ENSCABG00000013513) #24	DMWD (ENSCABG00000013516) #26	ENSCABG00000013518 #27	ENSCABG00000013519	ENSCABG00000013520	SNRPD2 (ENSCABG00000013521) #32	ENSCABG00000013522	PPP5C (ENSCABG00000013535) #10	CALM3 (ENSCABG00000014352)	PTGIR (ENSCABG00000014355)	ENSCABG00000014361	DACT3 (ENSCABG00000014366)	ENSCABG00000014369	PRKD2 (ENSCABG00000014371)
Goode s thornscrub tortoise	MODERN SPECIES	134	OPA3 (ENSGEVG00005014359) #36	GPR4 (ENSGEVG00005014339) #35	EML2 (ENSGEVG00005010764) #34	ENSGEVG00005009904	ENSGEVG00005009827	FBXO46 (ENSGEVG00005009811) #30	QPCTL (ENSGEVG00005009703) #31	ENSGEVG00005009649 #17	PRLHR (ENSGEVG00005009601)	ENSGEVG00005009560 #17	ENSGEVG00005009334 #17	CCDC61 (ENSGEVG00005009259) #18	ENSGEVG00005009198 #20	NOVA2 (ENSGEVG00005009144) #19	MYPOP (ENSGEVG00005009011) #21	IRF2BP1 (ENSGEVG00005008960) #22	ENSGEVG00005008917	ENSGEVG00005008883	ENSGEVG00005008841	SYMPK (ENSGEVG00005008656) #24	DMWD (ENSGEVG00005008598) #26	DMPK (ENSGEVG00005008534) #27	ENSGEVG00005008510	ENSGEVG00005008491 #28	ENSGEVG00005008479	ENSGEVG00005008454	ENSGEVG00005008436	SNRPD2 (ENSGEVG00005008411) #32	ENSGEVG00005008379	ENSGEVG00005008365 #11	PPP5C (ENSGEVG00005007903) #10
Archosauria	ANCESTRAL SPECIES	95														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000161745 #11	ENSGT00940000158785 #10
Aves	ANCESTRAL SPECIES	106														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26
Neognathae	ANCESTRAL SPECIES	80														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26
Neognathae_b	ANCESTRAL SPECIES	73														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26
Neognathae_c	ANCESTRAL SPECIES	78														ENSGT00940000154133.B #18	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00390000017045 #24	ENSGT00390000007686.a #26
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES	40	ENSACCG00020016515	ENSACCG00020016521	ENSACCG00020016525	PPP1R13L (ENSACCG00020016527)	ERCC1 (ENSACCG00020016529)	CLPTM1 (ENSACCG00020016534)	RELB (ENSACCG00020016544)	ENSACCG00020016555	ENSACCG00020016566	ENSACCG00020016572	PPP1R37 (ENSACCG00020016579)	NKPD1 (ENSACCG00020016583)	ENSACCG00020016587	CCDC61 (ENSACCG00020016594) #18	ENSACCG00020016598 #19	ENSACCG00020016599 #22	ENSACCG00020016608 #24
Golden eagle	MODERN SPECIES	51														ENSACCG00020016847	ENSACCG00020016849 #19	ENSACCG00020016852 #22	ENSACCG00020016857 #24	DMWD (ENSACCG00020016869) #26	ENSACCG00020016875	ENSACCG00020011868	ENSACCG00020011899 #11	ENSACCG00020011955 #10	ENSACCG00020012007	ENSACCG00020012046
Lepidosauria	ANCESTRAL SPECIES	58											ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745 #11	ENSGT00940000158785 #10	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Episquamata	ANCESTRAL SPECIES	7	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745.d #11	ENSGT00940000158785 #10	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d
Laterata	ANCESTRAL SPECIES	17	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00940000158292.a.e	ENSGT00570000080851 #29	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000167604	ENSGT00940000161745.d #11	ENSGT00940000158785 #10	ENSGT00940000166445	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d
Common wall lizard	MODERN SPECIES	16	SIRT2 (ENSPMRG00000012202)	NFKBIB (ENSPMRG00000012209)	ENSPMRG00000012216	ENSPMRG00000012225	ENSPMRG00000012284	ENSPMRG00000012287	ENSPMRG00000012296	ENSPMRG00000012318	FBXO46 (ENSPMRG00000012326) #30	QPCTL (ENSPMRG00000012336) #31	CCDC61 (ENSPMRG00000012345) #18	NANOS2 (ENSPMRG00000012351) #20	NOVA2 (ENSPMRG00000008480) #19	ENSPMRG00000008493	MYPOP (ENSPMRG00000008500) #21	IRF2BP1 (ENSPMRG00000008505) #22	ENSPMRG00000008509	SYMPK (ENSPMRG00000008517) #24	DMWD (ENSPMRG00000008538) #26	ENSPMRG00000008551 #27	ENSPMRG00000008574 #28	ENSPMRG00000008581	ENSPMRG00000008593 #29	ENSPMRG00000008612	ENSPMRG00000008617 #32	ENSPMRG00000008624	ENSPMRG00000008628	HIF3A (ENSPMRG00000008634) #11	PPP5C (ENSPMRG00000008661) #10	ENSPMRG00000008686	CALM3 (ENSPMRG00000008690)
Argentine black and white tegu	MODERN SPECIES	59	HNRNPL (ENSSMRG00000015085)	ENSSMRG00000015086	ENSSMRG00000015087	ENSSMRG00000015246	SIRT2 (ENSSMRG00000015247)	NFKBIB (ENSSMRG00000015249)	ENSSMRG00000015251	SARS2 (ENSSMRG00000015252)	ENSSMRG00000015255	FBXO46 (ENSSMRG00000015257) #30	QPCTL (ENSSMRG00000015258) #31	CCDC61 (ENSSMRG00000015259) #18	NANOS2 (ENSSMRG00000015261) #20	NOVA2 (ENSSMRG00000015264) #19	MYPOP (ENSSMRG00000015265) #21	IRF2BP1 (ENSSMRG00000015268) #22	ENSSMRG00000015300	SYMPK (ENSSMRG00000015301) #24	DMWD (ENSSMRG00000015307) #26	DMPK (ENSSMRG00000015308) #27	SIX5 (ENSSMRG00000015310) #28	ENSSMRG00000015311	ENSSMRG00000015316	SNRPD2 (ENSSMRG00000015318) #32	ENSSMRG00000015320	HIF3A (ENSSMRG00000015322) #11	PPP5C (ENSSMRG00000015324) #10	ENSSMRG00000015326	CALM3 (ENSSMRG00000015327)	PTGIR (ENSSMRG00000015328)	GNG8 (ENSSMRG00000015330)
Toxicofera	ANCESTRAL SPECIES	22	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237 #28	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT00570000080851 #29	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000161745.c #11	ENSGT00940000161745.d #11	ENSGT00940000158785 #10	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d
Elapidae	ANCESTRAL SPECIES	9	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00860000136302	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237.b #28	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT00570000080851 #29	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000161745.d #11	ENSGT00940000158785 #10	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Indian cobra	MODERN SPECIES	11	ENSNNAG00000015721	HNRNPL (ENSNNAG00000015748)	ENSNNAG00000015799	ENSNNAG00000015826	ENSNNAG00000015848	SIRT2 (ENSNNAG00000015878)	NFKBIB (ENSNNAG00000016134)	SARS2 (ENSNNAG00000016160)	ENSNNAG00000016340	FBXO46 (ENSNNAG00000016374) #30	QPCTL (ENSNNAG00000016428) #31	ENSNNAG00000016438 #18	NOVA2 (ENSNNAG00000016444) #19	ENSNNAG00000016452	MYPOP (ENSNNAG00000016459) #21	IRF2BP1 (ENSNNAG00000016466) #22	ENSNNAG00000016474	ENSNNAG00000016484 #24	DMWD (ENSNNAG00000016502) #26	DMPK (ENSNNAG00000016522) #27	ENSNNAG00000016566 #24	ENSNNAG00000016585 #28	ENSNNAG00000016590	ENSNNAG00000016595	ENSNNAG00000016598	SNRPD2 (ENSNNAG00000016603) #32	HIF3A (ENSNNAG00000016614) #11	PPP5C (ENSNNAG00000016638) #10	CALM3 (ENSNNAG00000016648)	PTGIR (ENSNNAG00000016669)	GNG8 (ENSNNAG00000016675)
Elapidae_a	ANCESTRAL SPECIES	33	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000162019 #27	ENSGT00940000162237.b #28	ENSGT00940000180177	ENSGT00940000162237.a #28	ENSGT00570000080851 #29	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000161745.d #11	ENSGT00940000158785 #10	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D
Acanthophiinae	ANCESTRAL SPECIES	32	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #30	ENSGT00390000003107.b #31	ENSGT00940000154133.B #18	ENSGT00950000183135.A.a #20	ENSGT00940000161740 #19	ENSGT00450000040421 #21	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00390000017045 #24	ENSGT00390000007686.a #26	ENSGT00940000180177	ENSGT00940000162237.a #28	ENSGT01030000234555.a.b	ENSGT00390000017608 #32	ENSGT00940000161745.d #11	ENSGT00940000158785 #10	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D	ENSGT00950000183181.B.b	ENSGT00960000193250	ENSGT00950000183024.a.b.b
Mainland tiger snake	MODERN SPECIES	559												QPCTL (ENSNSUG00000017401) #31	NANOS2 (ENSNSUG00000017398) #20	NOVA2 (ENSNSUG00000017397) #19	MYPOP (ENSNSUG00000017396) #21	IRF2BP1 (ENSNSUG00000017394) #22	ENSNSUG00000017393	SYMPK (ENSNSUG00000017317) #24
Eastern brown snake	MODERN SPECIES	77	ENSPTXG00000012361	ECH1 (ENSPTXG00000012357)	HNRNPL (ENSPTXG00000012356)	ENSPTXG00000017255	ENSPTXG00000017251	ENSPTXG00000017244	SIRT2 (ENSPTXG00000017240)	NFKBIB (ENSPTXG00000017236)	SARS2 (ENSPTXG00000017130)	ENSPTXG00000017124	FBXO46 (ENSPTXG00000017123) #30	QPCTL (ENSPTXG00000016820) #31	CCDC61 (ENSPTXG00000016815) #18	NOVA2 (ENSPTXG00000016809) #19	MYPOP (ENSPTXG00000016806) #21	IRF2BP1 (ENSPTXG00000016804) #22	ENSPTXG00000016802	SYMPK (ENSPTXG00000016761) #24	DMWD (ENSPTXG00000016737) #26	ENSPTXG00000016734	SIX5 (ENSPTXG00000016732) #28	ENSPTXG00000016729	ENSPTXG00000016727	SNRPD2 (ENSPTXG00000016725) #32	HIF3A (ENSPTXG00000016722) #11	PPP5C (ENSPTXG00000016719) #10	ENSPTXG00000016715	CALM3 (ENSPTXG00000016713)	PTGIR (ENSPTXG00000016711)	GNG8 (ENSPTXG00000016708)	PRKD2 (ENSPTXG00000016695)
Blue-lipped sea krait	MODERN SPECIES	7400															MYPOP (ENSLLTG00000017168) #21	IRF2BP1 (ENSLLTG00000017169) #22	ENSLLTG00000017171	SYMPK (ENSLLTG00000017186) #24
Lizard	MODERN SPECIES	1606															ENSACAG00000036436 #21	ENSACAG00000007842 #22	ENSACAG00000007869
Coelacanth	MODERN SPECIES	514			hyal1 (ENSLACG00000000256)	ENSLACG00000003934	ENSLACG00000010302	AP2S1 (ENSLACG00000012384)	ENSLACG00000012621	ENSLACG00000013126	ENSLACG00000014112	DHX34 (ENSLACG00000014421)	sycn.2 (ENSLACG00000014724)	ENSLACG00000014786	ENSLACG00000014891	ENSLACG00000014980 #20	nova2 (ENSLACG00000015223)	IRF2BP1 (ENSLACG00000015853) #22	foxa3 (ENSLACG00000016102)	SYMPK (ENSLACG00000016497) #24	RSPH4A (ENSLACG00000016667) ##25
Actinopterygii	ANCESTRAL SPECIES	104	ENSGT00940000158836	ENSGT00390000006996	ENSGT01080000257684	ENSGT00940000155478.hb	ENSGT00510000048626	ENSGT00940000159557	ENSGT00940000174794	ENSGT00940000162064	ENSGT00940000159132.b	ENSGT00940000161428	ENSGT00940000157969	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00450000040362	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00390000014810.a	ENSGT00940000156343	ENSGT01100000263537.b.b.d ##35	ENSGT00940000153881.b	ENSGT00940000153433.C	ENSGT00940000158234	ENSGT00980000199080	ENSGT00940000164056	ENSGT00940000160509
Neopterygii	ANCESTRAL SPECIES	142	ENSGT00940000155478.ib	ENSGT00940000156844.a	ENSGT00670000099420	ENSGT00940000155478.hb	ENSGT00510000048626	ENSGT00940000159557	ENSGT00940000162064	ENSGT00940000159132.b	ENSGT00940000161428	ENSGT00940000157969	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00450000040362	ENSGT00940000155573	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00390000014810.a	ENSGT00940000156343	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00980000199080	ENSGT01030000234927	ENSGT00940000164056	ENSGT00940000160509
Osteoglossocephalai	ANCESTRAL SPECIES	30	ENSGT00940000167295	ENSGT00450000040324.a.a.b	ENSGT00950000182843.a.a.a.b.a.b	ENSGT00940000155478.ib	ENSGT00940000156844.a	ENSGT00670000099420	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656	ENSGT00940000159557	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00450000040362	ENSGT00940000155573	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000160366	ENSGT00940000165073.a.b	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00980000199080	ENSGT00940000156384.o	ENSGT00940000159071.y.a
Osteoglossiformes	ANCESTRAL SPECIES	81	ENSGT00940000164418.a.a	ENSGT01040000240503.C	ENSGT00940000167295	ENSGT00450000040324.a.a.b	ENSGT00950000182843.a.a.a.b.a.b	ENSGT00940000155478.hb.a.a	ENSGT00940000156844.a	ENSGT00670000099420	ENSGT00940000159557	ENSGT00940000162064	ENSGT00940000157969	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00450000040362	ENSGT00940000155573	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00940000164056	ENSGT00390000009423.b
Asian bonytongue	MODERN SPECIES	1	timm50 (ENSSFOG00015005832)	zgc:171927 (ENSSFOG00015005464)	zgc:113149 (ENSSFOG00015005442)	zgc:101731 (ENSSFOG00015028062)	capns1b (ENSSFOG00015005397)	zgc:162698 (ENSSFOG00015005363)	ENSSFOG00015005354	ENSSFOG00015030370	CLIP3 (ENSSFOG00015005304)	ENSSFOG00015004647	GCGR (ENSSFOG00015004388)	eml2 (ENSSFOG00015004279) #34	GPR4 (ENSSFOG00015004258) #35	polr1g (ENSSFOG00015004233)	nova2 (ENSSFOG00015025924)	irf2bp1 (ENSSFOG00015004196) #22	foxa3 (ENSSFOG00015025669)	PLD3 (ENSSFOG00015004162)	ENSSFOG00015004153	ENSSFOG00015004094	kcnk6 (ENSSFOG00015004085)	sertad3 (ENSSFOG00015030796)	blvrb (ENSSFOG00015004038)	ENSSFOG00015003856	SHKBP1 (ENSSFOG00015003747)	ENSSFOG00015003348	ENSSFOG00015003313	ENSSFOG00015003252	yif1b (ENSSFOG00015003205)	ENSSFOG00015030029	si:cabz01090165.1 (ENSSFOG00015003161)
P. kingsleyae	MODERN SPECIES	130	rnaset2l (ENSPKIG00000006201)	cox7a1 (ENSPKIG00000006175)	chp2 (ENSPKIG00000006129)	dlc (ENSPKIG00000006082)	timm50 (ENSPKIG00000006036)	zgc:171927 (ENSPKIG00000006004)	zgc:113149 (ENSPKIG00000005987)	zgc:101731 (ENSPKIG00000005953)	capns1b (ENSPKIG00000005778)	ENSPKIG00000005709	CLIP3 (ENSPKIG00000005634)	eml2 (ENSPKIG00000005511) #34	GPR4 (ENSPKIG00000005476) #35	ENSPKIG00000005461	nova2 (ENSPKIG00000005431)	irf2bp1 (ENSPKIG00000005410) #22	foxa3 (ENSPKIG00000005386)	PLD3 (ENSPKIG00000005278)	ENSPKIG00000005232	snrnp35 (ENSPKIG00000005221)	SHKBP1 (ENSPKIG00000005113)	ENSPKIG00000004799	blvrb (ENSPKIG00000004671)	kcnk6 (ENSPKIG00000004645)	ENSPKIG00000004627	ENSPKIG00000004610	yif1b (ENSPKIG00000004571)	ENSPKIG00000004446	si:cabz01090165.1 (ENSPKIG00000004414)	si:ch211-116o3.5 (ENSPKIG00000004400)	bloc1s3 (ENSPKIG00000004389)
Clupeocephala	ANCESTRAL SPECIES	45	ENSGT00670000099420	ENSGT00940000154656.pb	ENSGT01000000214804	ENSGT00940000159557	ENSGT00940000174794	ENSGT00940000162064	ENSGT00940000159132.b	ENSGT00940000155736.D	ENSGT00940000157969	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT00940000155573.h	ENSGT00940000161740 #19	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00980000199080	ENSGT00940000164056	ENSGT00390000009423.b	ENSGT00530000064359.c.a
Otomorpha	ANCESTRAL SPECIES	44	ENSGT00950000182843.a.a.a.b.a.b	ENSGT00940000155478.hb.a.a	ENSGT00940000156844.a	ENSGT00670000099420	ENSGT00940000154656.pb	ENSGT01000000214804	ENSGT00940000159557	ENSGT00940000174794	ENSGT00940000162064	ENSGT00940000155736.D	ENSGT00940000157969	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00450000040362	ENSGT00940000155573.h	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00980000199080	ENSGT00940000164056	ENSGT00390000009423.b	ENSGT00530000064359.c.a
Clupeiformes	ANCESTRAL SPECIES	49	ENSGT01090000260005.a.a.b.a.b.c	ENSGT00940000167295.d	ENSGT00450000040324.a.a.b	ENSGT00950000182843.a.a.a.b.a.b	ENSGT00940000155478.hb.a.a	ENSGT00940000156844.a	ENSGT00670000099420	ENSGT00940000154656.pb	ENSGT00940000159557	ENSGT00940000174794	ENSGT00940000162064	ENSGT00940000157969	ENSGT00940000153887.B #34	ENSGT00450000040362	ENSGT00940000155573.h	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a
Atlantic herring	MODERN SPECIES	25	CLIP3 (ENSCHAG00000015483)	ENSCHAG00000015437	ENSCHAG00000015417	ENSCHAG00000015398	ENSCHAG00000015178	ENSCHAG00000015045	ENSCHAG00000015032	ENSCHAG00000015005	ENSCHAG00000014546	ENSCHAG00000014234	ENSCHAG00000014208	eml2 (ENSCHAG00000005076) #34	ENSCHAG00000004855	polr1g (ENSCHAG00000004810)	ENSCHAG00000004766	irf2bp1 (ENSCHAG00000004756) #22	foxa3 (ENSCHAG00000004738)	PLD3 (ENSCHAG00000004566)	HIPK4 (ENSCHAG00000004537)	ENSCHAG00000004468	kcnk6 (ENSCHAG00000004446)	sertad3 (ENSCHAG00000004372)	blvrb (ENSCHAG00000004330)	SPTBN4 (ENSCHAG00000002896)	SRPRA (ENSCHAG00000002314)	FAM118B (ENSCHAG00000002291)	ENSCHAG00000002284	ENSCHAG00000022376	ilvbl (ENSCHAG00000022088)	GLB1L2 (ENSCHAG00000021917)	B3GAT1 (ENSCHAG00000021887)
Denticle herring	MODERN SPECIES	10	mffa (ENSDCDG00000032448)	megf6 (ENSDCDG00000032450)	ENSDCDG00000032452	MECOM (ENSDCDG00000032463)	ilvbl (ENSDCDG00000032617)	FAM118B (ENSDCDG00000032648)	SRPRA (ENSDCDG00000032654)	SPOP (ENSDCDG00000032658)	ENSDCDG00000032673	ENSDCDG00000032889	GCGR (ENSDCDG00000032890)	eml2 (ENSDCDG00000032988) #34	ENSDCDG00000034793	polr1g (ENSDCDG00000023073)	NOVA1 (ENSDCDG00000023075)	irf2bp1 (ENSDCDG00000023079) #22	foxa3 (ENSDCDG00000023080)	PLD3 (ENSDCDG00000023082)	kcnk6 (ENSDCDG00000023088)	sertad3 (ENSDCDG00000023089)	blvrb (ENSDCDG00000023090)	ENSDCDG00000023094	ENSDCDG00000023262	ATM (ENSDCDG00000031990)	vezf1b (ENSDCDG00000032108)	ENSDCDG00000032113	zgc:171927 (ENSDCDG00000032114)	zgc:113149 (ENSDCDG00000032117)	zgc:101731 (ENSDCDG00000032119)	capns1b (ENSDCDG00000032121)	capns1b (ENSDCDG00000032127)
Otophysi	ANCESTRAL SPECIES	118	ENSGT00940000156765.a.a #37	ENSGT00390000017608.l #32	ENSGT00940000161006 #17	ENSGT00550000075063	ENSGT00940000160889	ENSGT00940000158201	ENSGT00940000161449	ENSGT00940000158052.a.h	ENSGT00390000001015.d	ENSGT00940000156517	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00980000199080	ENSGT00940000164056	ENSGT00390000009423.b
Characiphysae	ANCESTRAL SPECIES	150	ENSGT00940000156765.a.a.c #37	ENSGT00390000017608.l #32	ENSGT00940000161006 #17	ENSGT00550000075063	ENSGT00940000160889	ENSGT00940000158201	ENSGT00940000161449	ENSGT00940000158052.a.h	ENSGT00390000001015.d	ENSGT00940000156517	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000165073.a.b.b.a.a	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00730000111007.a.b	ENSGT00940000164361.d
Channel catfish	MODERN SPECIES	23	ENSIPUG00000001070	ENSIPUG00000001074	pglyrp5 (ENSIPUG00000001085) #17	ENSIPUG00000001102	polr2i (ENSIPUG00000001127)	RASA2 (ENSIPUG00000001162)	ENSIPUG00000001209	ENSIPUG00000001225	fbxo36a (ENSIPUG00000001263)	trip12 (ENSIPUG00000001343)	Dner (ENSIPUG00000001414)	Pid1 (ENSIPUG00000001435)	sphkap (ENSIPUG00000001459)	ENSIPUG00000001463	daw1 (ENSIPUG00000001478)	irf2bp1 (ENSIPUG00000001577) #22	foxa2 (ENSIPUG00000001587)	pld3 (ENSIPUG00000001601)	ENSIPUG00000001622	ENSIPUG00000001637	ENSIPUG00000001687	ENSIPUG00000001702	ENSIPUG00000001715	KCNK1 (ENSIPUG00000001749)	sertad3 (ENSIPUG00000001758)	blvrb (ENSIPUG00000001764)	ENSIPUG00000001782	SHKBP1 (ENSIPUG00000001838)	ENSIPUG00000001870	ltbp4 (ENSIPUG00000001890)	ENSIPUG00000002042
Characiphysae_b	ANCESTRAL SPECIES	182											ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000165073.a.b.b.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a.b	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00730000111007.a.b	ENSGT00940000164361.d
Electric eel	MODERN SPECIES	222											dner (ENSEEEG00000012780)	pid1 (ENSEEEG00000012781)	sphkap (ENSEEEG00000012782)	ENSEEEG00000012787	slc19a3b (ENSEEEG00000012892)	irf2bp1 (ENSEEEG00000012896) #22	foxa3 (ENSEEEG00000012897)	PLD3 (ENSEEEG00000012903)	ENSEEEG00000013034	kcnk6 (ENSEEEG00000013043)	sertad3 (ENSEEEG00000013044)	blvrb (ENSEEEG00000013046)	ENSEEEG00000013048	SPTBN4 (ENSEEEG00000013051)	SHKBP1 (ENSEEEG00000013079)	ENSEEEG00000013168	ENSEEEG00000013171	ENSEEEG00000013176	acte1 (ENSEEEG00000013209)	ENSEEEG00000014073	ENSEEEG00000014078
Characoidei	ANCESTRAL SPECIES	225											ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000165073.a.b.b.a.a	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00730000111007.a.b	ENSGT00940000164361.d
Mexicana tetra	MODERN SPECIES	9	ENSAMXG00000021588	polr2i (ENSAMXG00000030198)	ENSAMXG00000037424	snrpd2 (ENSAMXG00000033526) #32	ENSAMXG00000034963 #37	akt2 (ENSAMXG00000021575)	ccnp (ENSAMXG00000021564)	si:ch211-132b12.7 (ENSAMXG00000036645)	ENSAMXG00000034096	dner (ENSAMXG00000021551)	pid1 (ENSAMXG00000021550)	ENSAMXG00000021548	sphkap (ENSAMXG00000021545)	daw1 (ENSAMXG00000021533)	slc19a3b (ENSAMXG00000021516)	irf2bp1 (ENSAMXG00000037589) #22	foxa3 (ENSAMXG00000038672)	PLD3 (ENSAMXG00000021504)	ENSAMXG00000042255	ENSAMXG00000029435	kcnk6 (ENSAMXG00000043415)	sertad3 (ENSAMXG00000038195)	blvrb (ENSAMXG00000021462)	ENSAMXG00000025276	SPTBN4 (ENSAMXG00000021263)	SHKBP1 (ENSAMXG00000021061)	ENSAMXG00000020976	ENSAMXG00000020799	ENSAMXG00000034215	ENSAMXG00000008598	ENSAMXG00000037524
Red-bellied piranha	MODERN SPECIES	518												ENSPNAG00000014131	sphkap (ENSPNAG00000014107)	daw1 (ENSPNAG00000014074)	slc19a3b (ENSPNAG00000014024)	irf2bp1 (ENSPNAG00000002920) #22	foxa3 (ENSPNAG00000013736)	ENSPNAG00000002909	ENSPNAG00000013711	ENSPNAG00000013691	PLD3 (ENSPNAG00000013689)	ENSPNAG00000002876	ENSPNAG00000013660	ENSPNAG00000013635	kcnk6 (ENSPNAG00000013608)	sertad3 (ENSPNAG00000002842)
Cyprinoidei	ANCESTRAL SPECIES	12	ENSGT00940000159519	ENSGT00950000182818.C.a	ENSGT00940000157126.e	ENSGT00940000159663	ENSGT00870000136493.d	ENSGT00940000164937.a.a	ENSGT00940000156649.c.a	ENSGT00950000183181.B.b.l.b	ENSGT01100000263564.a	ENSGT00990000204162	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000165073.a.b.b.a.c	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000166911	ENSGT00940000156343.lb.a	ENSGT00940000157384.b	ENSGT00940000165683	ENSGT00940000159223.c	ENSGT00950000182903.a.a.c	ENSGT00940000160400	ENSGT00940000155470.b	ENSGT00390000016972
Cyprininae	ANCESTRAL SPECIES	282		ENSGT00940000157126.e.c.a	ENSGT00940000159663.c.b	ENSGT00870000136493.d.a	ENSGT00940000164937.a.a.d	ENSGT00940000156649.c.a.j	ENSGT00950000183181.B.b.l.b.d	ENSGT01100000263564.a.o	ENSGT00990000204162.a	ENSGT00940000158872.b	ENSGT00510000048154.a.a	ENSGT00510000048154.b	ENSGT00940000153313.A.b	ENSGT00940000167309.a	ENSGT00950000183022.a.a.b.a	ENSGT00940000162120 #22	ENSGT00940000166203	ENSGT00950000183059.b.b.b	ENSGT00940000165073.a.b.b.a.c	ENSGT00940000160509.e	ENSGT00390000014810.a.b	ENSGT01030000235127.b	ENSGT00390000014810.a.a.a	ENSGT00940000156343.lb.a.f	ENSGT00940000157384.b.a	ENSGT00940000165683.b	ENSGT00940000159223.c.a	ENSGT00950000182903.a.a.c	ENSGT00940000160400.e	ENSGT00940000155470.b.b	ENSGT00390000016972.l
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	225			ENSGT00940000157126.e.c.b	ENSGT00940000159663.c.a	ENSGT00870000136493.d.b	ENSGT00940000164937.a.a.c	ENSGT00940000156649.c.a.i	ENSGT00950000183181.B.b.l.b.c	ENSGT01100000263564.a.p	ENSGT00990000204162.b	ENSGT00940000158872.a	ENSGT00510000048154.a.b	ENSGT00510000048154.b	ENSGT00940000153313.A.a	ENSGT00940000167309.a	ENSGT00940000162120.a #22	ENSGT00940000166203.a	ENSGT00950000183059.b.b.b	ENSGT00940000165073.a.b.b.a.c	ENSGT00940000165073.a.a.k	ENSGT00940000165073.a.b.b.a.d	ENSGT00940000160509.f	ENSGT01030000235127.a	ENSGT00390000014810.a.a.b	ENSGT00940000156343.lb.a.e	ENSGT00940000157384.b.b	ENSGT00940000165683.a	ENSGT00940000159223.c.b	ENSGT00950000182903.a.a.c.d	ENSGT00940000155470.b.b	ENSGT00390000016972.l
Common carp reference	MODERN SPECIES	19	KCNJ1 (ENSCCRG00000040981)	fli1 (ENSCCRG00000017909)	ets1 (ENSCCRG00000004213)	smtla (ENSCCRG00000007925)	KIRREL3 (ENSCCRG00000044345)	ENSCCRG00000077434	rbm7 (ENSCCRG00000028774)	ENSCCRG00000068230	ENSCCRG00000016373	ENSCCRG00000039287	ENSCCRG00000056974	dner (ENSCCRG00000009974)	pid1 (ENSCCRG00000055569)	sphkap (ENSCCRG00000033812)	ENSCCRG00000073138	irf2bp1 (ENSCCRG00000056092) #22	foxa3 (ENSCCRG00000034162)	ENSCCRG00000021461	ENSCCRG00000021454	ENSCCRG00000063267	kcnk6 (ENSCCRG00000054796)	sertad3 (ENSCCRG00000061483)	blvrb (ENSCCRG00000034196)	ENSCCRG00000033338	pcyt1ab (ENSCCRG00000024722)	mmp23bb (ENSCCRG00000072975)	ap2m1b (ENSCCRG00000001037)	ENSCCRG00000023207	rnpepl1 (ENSCCRG00000020950)	abcc5 (ENSCCRG00000053693)	rpl35a (ENSCCRG00000009315)
Golden-line barbel	MODERN SPECIES	30	ENSSGRG00000052236	ada2a (ENSSGRG00000052238)	ENSSGRG00000052239	ENSSGRG00000052242	atp6v1e1a (ENSSGRG00000052336)	cpa2 (ENSSGRG00000052365)	cpa4 (ENSSGRG00000052366)	ENSSGRG00000052382	RASSF10 (ENSSGRG00000052383)	tead1a (ENSSGRG00000052390)	dner (ENSSGRG00000052420)	pid1 (ENSSGRG00000052421)	sphkap (ENSSGRG00000052423)	ENSSGRG00000052425	ENSSGRG00000052429	irf2bp1 (ENSSGRG00000052431) #22	foxa3 (ENSSGRG00000052433)	PLD3 (ENSSGRG00000052434)	ENSSGRG00000052439	kcnk6 (ENSSGRG00000052443)	sertad3 (ENSSGRG00000052444)	ENSSGRG00000052446	ENSSGRG00000052447	ENSSGRG00000052451	pcyt1ab (ENSSGRG00000052454)	mmp23bb (ENSSGRG00000052484)	ENSSGRG00000052489	DVL3 (ENSSGRG00000052500)	abcc5 (ENSSGRG00000052957)	rpl35a (ENSSGRG00000052968)	cstf3 (ENSSGRG00000052972)
Cyprininae_a	ANCESTRAL SPECIES	105	ENSGT00940000159519.f	ENSGT00940000159519.e.b	ENSGT00950000182818.C.a.a	ENSGT00940000157126.e.c.a	ENSGT00940000159663.c.b	ENSGT00870000136493.d.a	ENSGT00940000164937.a.a.d	ENSGT00940000156649.c.a.j	ENSGT00950000183181.B.b.l.b.d	ENSGT01100000263564.a.o	ENSGT00990000204162.a	ENSGT00940000158872.b	ENSGT00510000048154.a.a	ENSGT00940000153313.A.b	ENSGT00950000183022.a.a.b.a	ENSGT00940000162120.b #22	ENSGT00940000166203.b	ENSGT00940000160509.e	ENSGT00390000014810.a.b	ENSGT01030000235127.b	ENSGT00390000014810.a.a.a	ENSGT00940000156343.lb.a.f	ENSGT00940000157384.b.a	ENSGT00940000165683.b	ENSGT00940000159223.c.a	ENSGT00950000182903.a.a.c.c	ENSGT00940000160400.e	ENSGT00940000160400.f	ENSGT00940000155470.b.a	ENSGT00390000006758.a.a.a	ENSGT00950000182976.a.b.d.c
Common carp reference	MODERN SPECIES	9	ets1 (ENSCCRG00000037742)	smtla (ENSCCRG00000067121)	KIRREL3 (ENSCCRG00000044482)	ENSCCRG00000065375	ENSCCRG00000059349	rbm7 (ENSCCRG00000042084)	ENSCCRG00000071253	ENSCCRG00000071918	ENSCCRG00000074265	ENSCCRG00000076838	dner (ENSCCRG00000014506)	pid1 (ENSCCRG00000061146)	sphkap (ENSCCRG00000054266)	ENSCCRG00000034155	slc19a3b (ENSCCRG00000034158)	irf2bp1 (ENSCCRG00000034159) #22	foxa3 (ENSCCRG00000081408)	ENSCCRG00000028419	kcnk6 (ENSCCRG00000034180)	sertad3 (ENSCCRG00000077593)	blvrb (ENSCCRG00000034183)	ENSCCRG00000056362	ENSCCRG00000012619	pcyt1ab (ENSCCRG00000065713)	mmp23bb (ENSCCRG00000078976)	ap2m1b (ENSCCRG00000079718)	ENSCCRG00000003021	rnpepl1 (ENSCCRG00000015841)	abcc5 (ENSCCRG00000009261)	ENSCCRG00000071202	depdc7a (ENSCCRG00000036181)
Golden-line barbel	MODERN SPECIES	318						ENSSGRG00000042153	rbm7 (ENSSGRG00000042154)	ENSSGRG00000042155	GRAMD1B (ENSSGRG00000042170)	ENSSGRG00000042940	dner (ENSSGRG00000042941)	pid1 (ENSSGRG00000042945)	sphkap (ENSSGRG00000042948)	ENSSGRG00000042950	slc19a3b (ENSSGRG00000042953)	irf2bp1 (ENSSGRG00000042954) #22	foxa3 (ENSSGRG00000042955)	kcnk6 (ENSSGRG00000042961)	blvrb (ENSSGRG00000042963)	SPTBN4 (ENSSGRG00000042994)	pcyt1ab (ENSSGRG00000044404)	mmp23bb (ENSSGRG00000044514)	ap2m1b (ENSSGRG00000044516)	DVL3 (ENSSGRG00000044538)	rnpepl1 (ENSSGRG00000044584)	abcc5 (ENSSGRG00000044629)	cstf3 (ENSSGRG00000045290)	depdc7a (ENSSGRG00000045296)	QSER1 (ENSSGRG00000045297)	prrg4 (ENSSGRG00000045299)	eif3m (ENSSGRG00000045315)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	37	large2 (ENSCARG00000067584)	ENSCARG00000067528	KIRREL3 (ENSCARG00000067082)	BARX2 (ENSCARG00000067025)	rbm7 (ENSCARG00000067012)	ENSCARG00000067001	GRAMD1B (ENSCARG00000066690)	ENSCARG00000066671	ENSCARG00000066666	ENSCARG00000066661	dner (ENSCARG00000066463)	pid1 (ENSCARG00000066427)	ENSCARG00000066416	sphkap (ENSCARG00000066368)	ENSCARG00000066235	irf2bp1 (ENSCARG00000066224) #22	foxa3 (ENSCARG00000066211)	PLD3 (ENSCARG00000066182)	ENSCARG00000066166	kcnk6 (ENSCARG00000066153)	sertad3 (ENSCARG00000066149)	blvrb (ENSCARG00000066139)	ENSCARG00000066127	SPTBN4 (ENSCARG00000065933)	pcyt1ab (ENSCARG00000065863)	mmp23bb (ENSCARG00000065840)	ap2m1b (ENSCARG00000065829)	DVL3 (ENSCARG00000065565)	rnpepl1 (ENSCARG00000065448)	abcc5 (ENSCARG00000065054)	rpl35a (ENSCARG00000065008)
Goldfish	MODERN SPECIES	9	ENSCARG00000039042	BARX2 (ENSCARG00000039047)	rbm7 (ENSCARG00000039057)	ENSCARG00000039083	GRAMD1B (ENSCARG00000039340)	ENSCARG00000043283	ENSCARG00000043302	ENSCARG00000043318	ENSCARG00000043334	ENSCARG00000043354	dner (ENSCARG00000043426)	pid1 (ENSCARG00000043758)	ENSCARG00000043773	ENSCARG00000043805	slc19a3b (ENSCARG00000043986)	irf2bp1 (ENSCARG00000044015) #22	foxa3 (ENSCARG00000044023)	PLD3 (ENSCARG00000044050)	ENSCARG00000044210	kcnk6 (ENSCARG00000044216)	sertad3 (ENSCARG00000044230)	blvrb (ENSCARG00000044236)	ENSCARG00000044392	mmp23bb (ENSCARG00000045711)	ap2m1b (ENSCARG00000045760)	DVL3 (ENSCARG00000046684)	rnpepl1 (ENSCARG00000047458)	ABCC5a (ENSCARG00000047885)	rpl35a (ENSCARG00000051257)	cstf3 (ENSCARG00000051363)	depdc7a (ENSCARG00000052650)
Zebrafish	MODERN SPECIES	9	ets1 (ENSDARG00000024431)	smtla (ENSDARG00000038191)	KIRREL3 (ENSDARG00000115903)	ENSDARG00000113833	BARX2 (ENSDARG00000041098)	rbm7 (ENSDARG00000020841)	ENSDARG00000116487	GRAMD1B (ENSDARG00000074258)	ENSDARG00000040319	ENSDARG00000105882	dner (ENSDARG00000061031)	pid1 (ENSDARG00000098984)	sphkap (ENSDARG00000017429)	daw1 (ENSDARG00000021462)	slc19a3b (ENSDARG00000061103)	irf2bp1 (ENSDARG00000005468) #22	foxa3 (ENSDARG00000012788)	PLD3 (ENSDARG00000068199)	ENSDARG00000097368	ENSDARG00000017246	ENSDARG00000094522	kcnk6 (ENSDARG00000007383)	sertad3 (ENSDARG00000097473)	blvrb (ENSDARG00000096829)	SPTBN4 (ENSDARG00000092624)	ENSDARG00000111942	pcyt1ab (ENSDARG00000004492)	mmp23bb (ENSDARG00000009825)	ap2m1b (ENSDARG00000033899)	DVL3 (ENSDARG00000103462)	rnpepl1 (ENSDARG00000007813)
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES	626															ENSGT00940000161740 #19	ENSGT00940000162120.e #22
Protacanthopterygii	ANCESTRAL SPECIES	7	ENSGT00940000155478.ib.b	ENSGT00940000156844.a	ENSGT00670000099420	ENSGT00940000154656.pb	ENSGT01000000214804	ENSGT00940000159557	ENSGT00940000162064.m.b.a	ENSGT00940000155736.D	ENSGT00940000162064.m.b.b	ENSGT00940000157969	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000161740 #19	ENSGT00940000162120.e #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00980000199080	ENSGT00940000164056	ENSGT00390000009423.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	222	ENSGT00940000155478.ib.a	ENSGT00950000182843.a.a.a.b.a.b.d.b	ENSGT00940000155478.ib.b.b	ENSGT00940000156844.a	ENSGT00670000099420.d	ENSGT00940000154656.pb	ENSGT01000000214804	ENSGT00940000159557.c	ENSGT00940000162064.m.b.b.b	ENSGT00940000157969.xb	ENSGT00940000153887.B.c #34	ENSGT01100000263537.b.b.c.a.a.a.a #35	ENSGT00450000040362.f	ENSGT01100000263537.b.b.c.a.a.b #35	ENSGT00940000161740 #19	ENSGT00940000162120.e.a #22	ENSGT00940000166203.e	ENSGT00950000183059.b.b.f	ENSGT00940000161512.d	ENSGT00940000160509.h	ENSGT01030000235127.c	ENSGT00390000014810.a.d	ENSGT00940000156343.lb.a.s	ENSGT00940000153881.b.f	ENSGT00940000167036.h	ENSGT00940000158234.w	ENSGT00980000199080	ENSGT00940000164056.g.a	ENSGT00390000009423.b.g	ENSGT00530000064359.c.a	ENSGT00940000155076.b.a.a.b.f
Salmoninae_a	ANCESTRAL SPECIES	3	ENSGT00950000182843.a.a.a.b.a.b.d.b	ENSGT00940000155478.ib.b.b	ENSGT00940000156844.a	ENSGT00670000099420.d	ENSGT00940000154656.pb	ENSGT01000000214804	ENSGT00940000159557.c	ENSGT00940000162064.m.b.b.b	ENSGT00940000157969.xb	ENSGT00940000153887.B.c #34	ENSGT01100000263537.b.b.c.a.a.a.a #35	ENSGT01100000263537.b.b.c.a.a.b #35	ENSGT00940000155573.g.a.b	ENSGT00450000040362.f	ENSGT00940000161740 #19	ENSGT00940000162120.e.a #22	ENSGT00940000166203.e	ENSGT00950000183059.b.b.f	ENSGT00940000161512.d	ENSGT00940000160366.g.a	ENSGT00940000165073.a.a.j	ENSGT00940000160509.h	ENSGT01030000235127.c	ENSGT00390000014810.a.d	ENSGT00940000156343.lb.a.s	ENSGT00940000153881.b.f	ENSGT00940000167036.h	ENSGT00940000158234.w	ENSGT00940000164056.g.a	ENSGT00390000009423.b.g	ENSGT00530000064359.c.a
Salmo	ANCESTRAL SPECIES	22	ENSGT00940000167295.l	ENSGT00450000040324.a.a.b.a	ENSGT00950000182843.a.a.a.b.a.b.d.b	ENSGT00940000155478.ib.b.b	ENSGT00940000156844.a	ENSGT00670000099420.d	ENSGT00940000154656.pb	ENSGT01000000214804	ENSGT00940000159557.c	ENSGT00940000162064.m.b.b.b	ENSGT00940000157969.xb	ENSGT00940000153887.B.c #34	ENSGT01100000263537.b.b.c.a.a.a.a #35	ENSGT00940000155573.g.a.b	ENSGT00450000040362.f	ENSGT00940000162120.e.a #22	ENSGT00940000166203.e	ENSGT00950000183059.b.b.f	ENSGT00940000161512.d	ENSGT00940000160366.g.b	ENSGT00940000160509.h	ENSGT01030000235127.c	ENSGT00390000014810.a.d	ENSGT00940000156343.lb.a.s	ENSGT00940000153881.b.f	ENSGT00940000167036.h	ENSGT00940000158234.w	ENSGT00940000164056.g.a	ENSGT00390000009423.b.g	ENSGT00530000064359.c.a	ENSGT00940000155076.b.a.a.b.f
River trout	MODERN SPECIES	4	zgc:101731 (ENSSTUG00000004854)	ENSSTUG00000004587	zgc:162698 (ENSSTUG00000004426)	ENSSTUG00000004406	ENSSTUG00000004394	dharma (ENSSTUG00000004387)	CLIP3 (ENSSTUG00000004218)	ENSSTUG00000004150	ENSSTUG00000004062	eml2 (ENSSTUG00000003440) #34	GPR4 (ENSSTUG00000003342) #35	ENSSTUG00000003323	ENSSTUG00000003308	ENSSTUG00000003222	polr1g (ENSSTUG00000003204)	irf2bp1 (ENSSTUG00000003198) #22	foxa3 (ENSSTUG00000003189)	PLD3 (ENSSTUG00000003128)	ENSSTUG00000003111	kcnk6 (ENSSTUG00000003070)	sertad3 (ENSSTUG00000003053)	blvrb (ENSSTUG00000003049)	SPTBN4 (ENSSTUG00000002920)	SHKBP1 (ENSSTUG00000002858)	ENSSTUG00000002820	ENSSTUG00000002804	LTBP4 (ENSSTUG00000002462)	ENSSTUG00000002407	yif1b (ENSSTUG00000002379)	ENSSTUG00000002356	ENSSTUG00000002346
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000047863	ENSSSAG00000047853	ENSSSAG00000047829	ENSSSAG00000047448	zgc:162698 (ENSSSAG00000047416)	ENSSSAG00000047411	ENSSSAG00000069745	dharma (ENSSSAG00000110260)	ENSSSAG00000047276	ENSSSAG00000069652	ENSSSAG00000047181	eml2 (ENSSSAG00000043969) #34	ENSSSAG00000106246 #35	ENSSSAG00000043758	ENSSSAG00000043727	irf2bp1 (ENSSSAG00000088713) #22	foxa3 (ENSSSAG00000095059)	ENSSSAG00000043653	HIPK4 (ENSSSAG00000043691)	kcnk6 (ENSSSAG00000043625)	sertad3 (ENSSSAG00000110295)	blvrb (ENSSSAG00000043543)	ENSSSAG00000050910	SHKBP1 (ENSSSAG00000005855)	ENSSSAG00000045801	ENSSSAG00000005690	ENSSSAG00000005660	yif1b (ENSSSAG00000106917)	ENSSSAG00000005647	ENSSSAG00000005642	ENSSSAG00000005638
Oncorhynchus	ANCESTRAL SPECIES	14	ENSGT00940000167295.k.b	ENSGT00450000040324.a.a.b.a	ENSGT00950000182843.a.a.a.b.a.b.c	ENSGT00940000155478.ib.b.b	ENSGT00940000156844.a	ENSGT00670000099420.d	ENSGT01000000214804	ENSGT00940000159557.c	ENSGT00940000162064.m.b.b.b	ENSGT00940000157969.xb	ENSGT00940000153887.B.c #34	ENSGT01100000263537.b.b.c.a.a.b #35	ENSGT00940000155573.g.a.b	ENSGT00450000040362.f	ENSGT00940000161740 #19	ENSGT00940000162120.e.a #22	ENSGT00940000166203.e	ENSGT00950000183059.b.b.f	ENSGT00940000161512.d	ENSGT00940000160366.g.b.a	ENSGT00940000165073.a.a.j	ENSGT00940000160509.h	ENSGT01030000235127.c	ENSGT00390000014810.a.d	ENSGT00940000156343.lb.a.s	ENSGT00940000153881.b.f	ENSGT00940000167036.h	ENSGT00940000158234.w	ENSGT00980000199080	ENSGT00940000164056.g.a	ENSGT00390000009423.b.g
Oncorhynchus_a	ANCESTRAL SPECIES	41	ENSGT00940000167295.k.b	ENSGT00450000040324.a.a.b.a	ENSGT00950000182843.a.a.a.b.a.b.c	ENSGT00940000155478.ib.b.b	ENSGT00940000156844.a	ENSGT00670000099420.d	ENSGT01000000214804	ENSGT00940000159557.c	ENSGT00940000162064.m.b.b.b	ENSGT00940000157969.xb	ENSGT00940000153887.B.c #34	ENSGT01100000263537.b.b.c.a.a.b #35	ENSGT00940000155573.g.a.b	ENSGT00450000040362.f	ENSGT00940000161740 #19	ENSGT00940000162120.e.a #22	ENSGT00940000166203.e	ENSGT00950000183059.b.b.f	ENSGT00940000160366.g.b.a	ENSGT00940000165073.a.a.j	ENSGT00940000160509.h	ENSGT01030000235127.c	ENSGT00390000014810.a.d	ENSGT00940000156343.lb.a.s	ENSGT00940000153881.b.f	ENSGT00940000167036.h	ENSGT00940000158234.w	ENSGT00940000164056.g.a	ENSGT00390000009423.b.g	ENSGT00530000064359.c.a	ENSGT00940000155076.b.a.a.b.f
Chinook salmon	MODERN SPECIES	5	timm50 (ENSOTSG00005018808)	zgc:171927 (ENSOTSG00005018800)	zgc:113149 (ENSOTSG00005018792)	zgc:101731 (ENSOTSG00005018784)	ENSOTSG00005018781	CAPNS1 (ENSOTSG00005018733)	zgc:162698 (ENSOTSG00005018726)	ENSOTSG00005018723	dharma (ENSOTSG00005018721)	CLIP3 (ENSOTSG00005018481)	ENSOTSG00005018421	GCGR (ENSOTSG00005018415)	eml2 (ENSOTSG00005002547) #34	GPR4 (ENSOTSG00005002422) #35	ENSOTSG00005002417 #19	irf2bp1 (ENSOTSG00005002412) #22	polr1g (ENSOTSG00005002409)	foxa3 (ENSOTSG00005002404)	PLD3 (ENSOTSG00005002400)	ENSOTSG00005002276	ENSOTSG00005002173	kcnk6 (ENSOTSG00005001936)	sertad3 (ENSOTSG00005036068)	blvrb (ENSOTSG00005036067)	SPTBN4 (ENSOTSG00005036060)	SHKBP1 (ENSOTSG00005036057)	ENSOTSG00005036051	ENSOTSG00005036045	ENSOTSG00005036044	yif1b (ENSOTSG00005036043)	ENSOTSG00005036040
Coho salmon	MODERN SPECIES	9	zgc:113149 (ENSOKIG00005038498)	zgc:101731 (ENSOKIG00005038516)	CAPNS1 (ENSOKIG00005038549)	zgc:162698 (ENSOKIG00005038595)	ENSOKIG00005038652	dharma (ENSOKIG00005038657)	CLIP3 (ENSOKIG00005038667)	ENSOKIG00005038754	GCGR (ENSOKIG00005038777)	eml2 (ENSOKIG00005039422) #34	ENSOKIG00005046936	ENSOKIG00005046937	GPR4 (ENSOKIG00005046941) #35	ENSOKIG00005046948	ENSOKIG00005046955	irf2bp1 (ENSOKIG00005046961) #22	foxa3 (ENSOKIG00005046966)	PLD3 (ENSOKIG00005046978)	ENSOKIG00005046998	kcnk6 (ENSOKIG00005047006)	sertad3 (ENSOKIG00005047012)	blvrb (ENSOKIG00005047020)	SPTBN4 (ENSOKIG00005047055)	SHKBP1 (ENSOKIG00005047185)	ENSOKIG00005047192	LTBP4 (ENSOKIG00005047243)	ENSOKIG00005047356	yif1b (ENSOKIG00005047367)	ENSOKIG00005047388	si:cabz01090165.1 (ENSOKIG00005047393)	ENSOKIG00005047397
Rainbow trout	MODERN SPECIES	16	dlc (ENSOMYG00000025761)	timm50 (ENSOMYG00000025705)	zgc:113149 (ENSOMYG00000025675)	zgc:101731 (ENSOMYG00000025656)	ENSOMYG00000025577	zgc:162698 (ENSOMYG00000025538)	ENSOMYG00000025530	dharma (ENSOMYG00000025519)	ENSOMYG00000025430	ENSOMYG00000025240	ENSOMYG00000025191	eml2 (ENSOMYG00000023486) #34	ENSOMYG00000022974 #35	ENSOMYG00000022958	ENSOMYG00000022935	irf2bp1 (ENSOMYG00000022928) #22	ENSOMYG00000052866	foxa3 (ENSOMYG00000022920)	ENSOMYG00000022916	ENSOMYG00000022868	ENSOMYG00000022815	ENSOMYG00000066308	kcnk6 (ENSOMYG00000022775)	sertad3 (ENSOMYG00000022764)	blvrb (ENSOMYG00000022749)	ENSOMYG00000022595	SHKBP1 (ENSOMYG00000022490)	ENSOMYG00000022397	ENSOMYG00000022022	ENSOMYG00000021771	ENSOMYG00000021752
Huchen	MODERN SPECIES	2340												eml2 (ENSHHUG00000049183) #34	GPR4 (ENSHHUG00000050380) #35	ENSHHUG00000050381 #19	polr1g (ENSHHUG00000050382)	irf2bp1 (ENSHHUG00000050383) #22	foxa3 (ENSHHUG00000050384)
Salmoninae	ANCESTRAL SPECIES	109	ENSGT00450000040324.a.a.b.b	ENSGT00950000182843.a.a.a.b.a.b.d.a	ENSGT00940000155478.ib.b.a.a	ENSGT00670000099420.c	ENSGT00940000174800	ENSGT00940000159557.d	ENSGT00940000162064.m.b.a	ENSGT00940000155736.D	ENSGT00940000162064.m.b.b.a	ENSGT00940000157969.wb	ENSGT00940000153887.B.d #34	ENSGT01100000263537.b.b.c.a.a.a.b #35	ENSGT00950000183136.a.a.f	ENSGT00940000155573.g.a	ENSGT00450000040362.e	ENSGT00940000162120.e.b #22	ENSGT00940000166203.f	ENSGT00950000183059.b.b.e	ENSGT00940000161512.c	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000165073.a.a.j	ENSGT00940000160509.g	ENSGT01030000235127.d	ENSGT00390000014810.a.c	ENSGT00940000156343.lb.a.t	ENSGT00940000153881.b.e	ENSGT00940000167036.g	ENSGT00940000158234.x
Huchen	MODERN SPECIES	1149														ENSHHUG00000032676	polr1g (ENSHHUG00000032679)	irf2bp1 (ENSHHUG00000032681) #22	foxa3 (ENSHHUG00000032682)	PLD3 (ENSHHUG00000032687)	HIPK4 (ENSHHUG00000032712)	ENSHHUG00000032726	ENSHHUG00000032735	kcnk6 (ENSHHUG00000032769)	sertad3 (ENSHHUG00000032773)	blvrb (ENSHHUG00000032775)	ENSHHUG00000032811	ENSHHUG00000032812	SPTBN4 (ENSHHUG00000032814)	SHKBP1 (ENSHHUG00000032831)	ENSHHUG00000032888	LTBP4 (ENSHHUG00000032892)
Salmoninae_a	ANCESTRAL SPECIES	19	ENSGT00950000182843.a.a.a.b.a.b.d.a	ENSGT00940000155478.ib.b.a.b	ENSGT00940000155478.ib.b.a.a	ENSGT00670000099420.c	ENSGT00940000174800	ENSGT00940000159557.d	ENSGT00940000162064.m.b.a	ENSGT00940000155736.D	ENSGT00940000162064.m.b.b.a	ENSGT00940000157969.wb	ENSGT00940000153887.B.d #34	ENSGT01100000263537.b.b.c.a.a.a.b #35	ENSGT00950000183136.a.a.f	ENSGT00940000155573.g.a.a	ENSGT00450000040362.e	ENSGT00940000162120.e.b #22	ENSGT00940000166203.f	ENSGT00950000183059.b.b.e	ENSGT00940000161512.c	ENSGT00940000160366.g.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509.g	ENSGT01030000235127.d	ENSGT00390000014810.a.c	ENSGT00940000156343.lb.a.t	ENSGT00940000153881.b.e	ENSGT00940000167036.g	ENSGT00940000158234.x	ENSGT00980000199080	ENSGT00940000164056.g.b	ENSGT00390000009423.b.h
Salmo	ANCESTRAL SPECIES	7	ENSGT01040000240503.C.d	ENSGT00940000167295.k.a	ENSGT00450000040324.a.a.b.b	ENSGT00950000182843.a.a.a.b.a.b.d.a	ENSGT00940000155478.ib.b.a.b	ENSGT00940000155478.ib.b.a.a	ENSGT00670000099420.c	ENSGT00940000159557.d	ENSGT00940000162064.m.b.a	ENSGT00940000162064.m.b.b.a	ENSGT00940000157969.wb	ENSGT00940000153887.B.d #34	ENSGT01100000263537.b.b.c.a.a.a.b #35	ENSGT00940000155573.g.a.a	ENSGT00450000040362.e	ENSGT00940000162120.e.b #22	ENSGT00940000166203.f	ENSGT00950000183059.b.b.e	ENSGT00940000161512.c	ENSGT00940000160366.g.a	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509.g	ENSGT01030000235127.d	ENSGT00390000014810.a.c	ENSGT00940000156343.lb.a.t	ENSGT00940000153881.b.e	ENSGT00940000167036.g	ENSGT00940000158234.x	ENSGT00980000199080	ENSGT00940000164056.g.b	ENSGT00390000009423.b.h
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000069882	ENSSSAG00000069865	CPNS1 (ENSSSAG00000069776)	ENSSSAG00000098204	ENSSSAG00000069754	ENSSSAG00000069750	ENSSSAG00000069683	ENSSSAG00000101590	ENSSSAG00000069708	ENSSSAG00000047257	ENSSSAG00000069634	ENSSSAG00000118636	eml2 (ENSSSAG00000069203) #34	ENSSSAG00000083541 #35	ENSSSAG00000069162	irf2bp1 (ENSSSAG00000069154) #22	foxa3 (ENSSSAG00000107229)	pld3 (ENSSSAG00000069133)	hipk4 (ENSSSAG00000069125)	kcnk6 (ENSSSAG00000069105)	ENSSSAG00000103685	sertad3 (ENSSSAG00000087461)	BLVRB (ENSSSAG00000069097)	ENSSSAG00000093495	ENSSSAG00000007479	SHKBP1 (ENSSSAG00000046030)	ENSSSAG00000005796	ENSSSAG00000114751	ENSSSAG00000045674	ENSSSAG00000045639	yif1b (ENSSSAG00000045599)
River trout	MODERN SPECIES	18	ENSSTUG00000013442	ENSSTUG00000013439	CLIP3 (ENSSTUG00000013288)	ENSSTUG00000013272	ENSSTUG00000013134	ENSSTUG00000013114	ENSSTUG00000013105	ENSSTUG00000013092	ENSSTUG00000012925	ENSSTUG00000012806	GCGR (ENSSTUG00000012653)	eml2 (ENSSTUG00000006909) #34	GPR4 (ENSSTUG00000006713) #35	ENSSTUG00000006658	polr1g (ENSSTUG00000006650)	irf2bp1 (ENSSTUG00000006645) #22	foxa3 (ENSSTUG00000006643)	PLD3 (ENSSTUG00000006561)	HIPK4 (ENSSTUG00000006551)	ENSSTUG00000006540	ENSSTUG00000006536	kcnk6 (ENSSTUG00000006524)	sertad3 (ENSSTUG00000006519)	blvrb (ENSSTUG00000006507)	SPTBN4 (ENSSTUG00000005997)	SHKBP1 (ENSSTUG00000003943)	ENSSTUG00000013075	LTBP4 (ENSSTUG00000012716)	ENSSTUG00000012666	ENSSTUG00000012644	yif1b (ENSSTUG00000012620)
Oncorhynchus	ANCESTRAL SPECIES	24	ENSGT00940000167295.k.a	ENSGT00450000040324.a.a.b.b	ENSGT00950000182843.a.a.a.b.a.b.d.a	ENSGT00940000155478.ib.b.a.b	ENSGT00940000155478.ib.b.a.a	ENSGT00670000099420.c	ENSGT00940000174800	ENSGT00940000159557.d	ENSGT00940000162064.m.b.a	ENSGT00940000155736.D	ENSGT00940000157969.wb	ENSGT00940000153887.B.d #34	ENSGT00950000183136.a.a.f	ENSGT00940000155573.g.a.a	ENSGT00450000040362.e	ENSGT00940000162120.e.b #22	ENSGT00940000166203.f	ENSGT00950000183059.b.b.e	ENSGT00940000161512.c	ENSGT00940000160366.g.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509.g	ENSGT01030000235127.d	ENSGT00390000014810.a.c	ENSGT00940000156343.lb.a.t	ENSGT00940000153881.b.e	ENSGT00940000167036.g	ENSGT00940000158234.x	ENSGT00940000164056.g.b	ENSGT00390000009423.b.h	ENSGT00940000155076.b.a.a.b.e
Oncorhynchus_a	ANCESTRAL SPECIES	25	ENSGT01040000240503.C.d	ENSGT00940000167295.k.a	ENSGT00450000040324.a.a.b.b	ENSGT00950000182843.a.a.a.b.a.b.d.a	ENSGT00940000155478.ib.b.a.a	ENSGT00670000099420.c	ENSGT00940000174800	ENSGT00940000159557.d	ENSGT00940000162064.m.b.a	ENSGT00940000155736.D	ENSGT00940000157969.wb	ENSGT00940000153887.B.d #34	ENSGT00950000183136.a.a.f	ENSGT00940000155573.g.a.a	ENSGT00450000040362.e	ENSGT00940000162120.e.b #22	ENSGT00940000166203.f	ENSGT00950000183059.b.b.e	ENSGT00940000161512.c	ENSGT00940000160366.g.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509.g	ENSGT01030000235127.d	ENSGT00390000014810.a.c	ENSGT00940000156343.lb.a.t	ENSGT00940000153881.b.e	ENSGT00940000167036.g	ENSGT00940000158234.x	ENSGT00980000199080	ENSGT00940000164056.g.b	ENSGT00390000009423.b.h
Chinook salmon	MODERN SPECIES	4	ENSOTSG00005016198	ENSOTSG00005016196	ENSOTSG00005016194	ENSOTSG00005016192	ENSOTSG00005016190	ENSOTSG00005016186	CLIP3 (ENSOTSG00005016182)	ENSOTSG00005016180	ENSOTSG00005016179	ENSOTSG00005016176	ENSOTSG00005016172	eml2 (ENSOTSG00005004082) #34	ENSOTSG00005004009	ENSOTSG00005004008	polr1g (ENSOTSG00005004007)	irf2bp1 (ENSOTSG00005004006) #22	foxa3 (ENSOTSG00005004005)	PLD3 (ENSOTSG00005004000)	HIPK4 (ENSOTSG00005003994)	ENSOTSG00005003989	kcnk6 (ENSOTSG00005003985)	sertad3 (ENSOTSG00005003964)	blvrb (ENSOTSG00005003960)	SPTBN4 (ENSOTSG00005003889)	SHKBP1 (ENSOTSG00005003851)	ENSOTSG00005003846	LTBP4 (ENSOTSG00005003843)	ENSOTSG00005003835	yif1b (ENSOTSG00005003832)	ENSOTSG00005003831	si:cabz01090165.1 (ENSOTSG00005003830)
Coho salmon	MODERN SPECIES	6	timm50 (ENSOKIG00005031854)	zgc:171927 (ENSOKIG00005031802)	ENSOKIG00005031797	zgc:101731 (ENSOKIG00005031786)	ENSOKIG00005031584	ENSOKIG00005031556	ENSOKIG00005031545	ENSOKIG00005031538	CLIP3 (ENSOKIG00005031474)	ENSOKIG00005031269	ENSOKIG00005031229	GCGR (ENSOKIG00005031183)	eml2 (ENSOKIG00005030241) #34	ENSOKIG00005030142	ENSOKIG00005030071	irf2bp1 (ENSOKIG00005030054) #22	polr1g (ENSOKIG00005030043)	foxa3 (ENSOKIG00005012481)	PLD3 (ENSOKIG00005012415)	HIPK4 (ENSOKIG00005012407)	ENSOKIG00005012400	ENSOKIG00005012395	kcnk6 (ENSOKIG00005012385)	blvrb (ENSOKIG00005012369)	SPTBN4 (ENSOKIG00005012102)	SHKBP1 (ENSOKIG00005012055)	ENSOKIG00005012039	LTBP4 (ENSOKIG00005011885)	ENSOKIG00005011864	ENSOKIG00005011858	ENSOKIG00005011835
Rainbow trout	MODERN SPECIES	19	ENSOMYG00000044227	ENSOMYG00000052649	capn4 (ENSOMYG00000060525)	ENSOMYG00000044127	ENSOMYG00000044120	ENSOMYG00000044116	ENSOMYG00000044049	ENSOMYG00000073083	ENSOMYG00000043975	ENSOMYG00000043915	ENSOMYG00000074875	eml2 (ENSOMYG00000038022) #34	ENSOMYG00000048019	ENSOMYG00000036956	ENSOMYG00000036915	irf2bp1 (ENSOMYG00000036885) #22	ENSOMYG00000036869	foxa3 (ENSOMYG00000036877)	ENSOMYG00000024381	ENSOMYG00000024339	ENSOMYG00000055475	kcnk6 (ENSOMYG00000024280)	sertad3 (ENSOMYG00000024274)	blvrb (ENSOMYG00000024259)	ENSOMYG00000024092	SHKBP1 (ENSOMYG00000023899)	ENSOMYG00000023816	ENSOMYG00000023611	ENSOMYG00000023426	yif1b (ENSOMYG00000023412)	ENSOMYG00000058621
Northern pike	MODERN SPECIES		zgc:113149 (ENSELUG00000011689)	zgc:101731 (ENSELUG00000011700)	ENSELUG00000011740	CAPNS1 (ENSELUG00000011777)	zgc:162698 (ENSELUG00000011827)	ENSELUG00000011843	ENSELUG00000011869	CLIP3 (ENSELUG00000011920)	ENSELUG00000001294	ENSELUG00000012125	GCGR (ENSELUG00000012172)	eml2 (ENSELUG00000012289) #34	GPR4 (ENSELUG00000012330) #35	ENSELUG00000012346	polr1g (ENSELUG00000012387)	irf2bp1 (ENSELUG00000000460) #22	foxa3 (ENSELUG00000012404)	PLD3 (ENSELUG00000012426)	HIPK4 (ENSELUG00000012440)	ENSELUG00000031017	ENSELUG00000028672	kcnk6 (ENSELUG00000012465)	blvrb (ENSELUG00000012480)	SPTBN4 (ENSELUG00000000465)	SHKBP1 (ENSELUG00000012764)	ENSELUG00000012787	LTBP4 (ENSELUG00000012935)	ENSELUG00000012973	ENSELUG00000012990	yif1b (ENSELUG00000013019)	ENSELUG00000013045
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES	139	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT01070000253869	ENSGT00940000153582.a.m.a.a.b.b.b.b.b	ENSGT00940000154411	ENSGT00940000162179.e.a.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b	ENSGT00940000167306	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT00910000144115.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00980000198690	ENSGT00950000182970.C	ENSGT00940000165053	ENSGT00940000160011	ENSGT00550000075007	ENSGT01020000230625	ENSGT00530000063950.a.b	ENSGT00900000142611	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000166085	ENSGT00390000007686.a #26	ENSGT00940000160308	ENSGT00390000009409
Protacanthopterygii	ANCESTRAL SPECIES	81	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00510000048626	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000166947	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b.c	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT00910000144115.b.dc.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00950000182942.b.e	ENSGT00940000157165.e.b	ENSGT00940000158592.f	ENSGT00390000005544	ENSGT00940000153635.A	ENSGT00940000157686	ENSGT00940000164443.b.a	ENSGT01020000230360.c.b.b	ENSGT00390000005306	ENSGT00950000183206.a.a	ENSGT00940000159804	ENSGT00390000002823	ENSGT00940000165707	ENSGT01050000244814.a.a.b.b.b.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	348	ENSGT00940000155350.h.d	ENSGT00940000156251.b.a	ENSGT00530000064411.b.f	ENSGT00390000008610.a.b.b.b	ENSGT00940000155573.g.b.a	ENSGT00510000048626	ENSGT00940000155478.hb.b.a	ENSGT00940000164418.a.b.f	ENSGT00950000182985.a.b.a.a	ENSGT01030000234613.b.b.h.b	ENSGT00940000159555.v.b.d.a.b	ENSGT00950000182772.A.a.a.a.a.b.a.b	ENSGT00950000182772.A.a.a.a.a.a	ENSGT00940000173128.b	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000162120.f.a.a #22	ENSGT00950000183079.A.b.c.b.c
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00510000046732.A.c.r	ENSGT00390000005140.a.o.b	ENSGT00390000013989.b.e	ENSGT00940000155573.g.b.a	ENSGT00510000048626	ENSGT00940000155478.hb.b.a	ENSGT00940000164418.a.b.f	ENSGT00950000182985.a.b.a.a	ENSGT01030000234613.b.b.h.b	ENSGT00940000159555.v.b.d.a.b	ENSGT00950000182772.A.a.a.a.a.b.a.b	ENSGT00950000182772.A.a.a.a.a.a	ENSGT00940000173128.b	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000162120.f.a.a #22	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000157165.e.b.b	ENSGT00940000158592.f.a	ENSGT00390000005544	ENSGT00940000153635.A.f	ENSGT00940000157686.h	ENSGT01020000230360.c.b.b	ENSGT00390000005306.h	ENSGT00950000183206.a.a.c	ENSGT00940000159804.i	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000165190.B	ENSGT00940000165707.a	ENSGT01050000244814.a.a.b.b.b.b.b.c	ENSGT00940000166369.f
Salmo	ANCESTRAL SPECIES	44	ENSGT00510000046732.A.c.r	ENSGT00390000005140.a.o.b	ENSGT00390000013989.b.e	ENSGT00940000164977.a.b	ENSGT00390000002548.i	ENSGT00940000155573.g.b.a	ENSGT00510000048626	ENSGT00940000155478.hb.b.a	ENSGT00940000164418.a.b.f	ENSGT00950000182985.a.b.a.a	ENSGT01030000234613.b.b.h.b	ENSGT00940000159555.v.b.d.a.b	ENSGT00950000182772.A.a.a.a.a.a	ENSGT00910000144115.b.dc.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000162120.f.a.a #22	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000157165.e.b.b	ENSGT00940000158592.f.a	ENSGT00390000005544	ENSGT00940000153635.A.f	ENSGT00940000157686.h	ENSGT01020000230360.c.b.b	ENSGT00390000005306.h	ENSGT00950000183206.a.a.c	ENSGT00940000159804.i	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000165190.B	ENSGT00940000165707.a	ENSGT01050000244814.a.a.b.b.b.b.b.c	ENSGT00940000166369.f
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000102383	ENSSSAG00000122286	nova1 (ENSSSAG00000011478)	alkbh6 (ENSSSAG00000011720)	capns1a (ENSSSAG00000011852)	dlb (ENSSSAG00000075986)	ppp1r14aa (ENSSSAG00000089852)	ENSSSAG00000012320	ENSSSAG00000093155	ENSSSAG00000087356	ENSSSAG00000013065	ENSSSAG00000096877	ckm3 (ENSSSAG00000015360)	SFRS7 (ENSSSAG00000015467)	ENSSSAG00000015815	ENSSSAG00000031369 #22	ENSSSAG00000073142	ENSSSAG00000015502	ENSSSAG00000031513	ift46 (ENSSSAG00000032149)	ENSSSAG00000039166	hyou1 (ENSSSAG00000041165)	ENSSSAG00000107338	zpr1 (ENSSSAG00000048701)	ENSSSAG00000048739	ENSSSAG00000114214	ENSSSAG00000049121	hspa8 (ENSSSAG00000049191)	ENSSSAG00000096345	S6A13 (ENSSSAG00000050998)	bsx (ENSSSAG00000051122)
River trout	MODERN SPECIES	6	fam168a (ENSSTUG00000011347)	plekhb1 (ENSSTUG00000011405)	ENSSTUG00000011409	crx (ENSSTUG00000011422)	ENSSTUG00000011430	nova1 (ENSSTUG00000011443)	alkbh6 (ENSSTUG00000011492)	ENSSTUG00000011497	dlb (ENSSTUG00000011524)	ppp1r14aa (ENSSTUG00000011543)	EXOC3L2 (ENSSTUG00000011550)	MARK4 (ENSSTUG00000011588)	ckma (ENSSTUG00000011828)	ENSSTUG00000011838	hnrnpl (ENSSTUG00000011908)	IRF2BP1 (ENSSTUG00000012172) #22	micu2 (ENSSTUG00000012176)	B3GAT1 (ENSSTUG00000012188)	BBX (ENSSTUG00000012233)	ift46 (ENSSTUG00000012267)	vps11 (ENSSTUG00000014949)	hyou1 (ENSSTUG00000015801)	h2ax1 (ENSSTUG00000016438)	zpr1 (ENSSTUG00000016443)	ENSSTUG00000016498	ENSSTUG00000016530	hspa8 (ENSSTUG00000016553)	ENSSTUG00000016607	bsx (ENSSTUG00000016756)	lim2.1 (ENSSTUG00000016761)	ntm (ENSSTUG00000016769)
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00390000013989.b.e	ENSGT01100000263504.a.b.a.a	ENSGT00940000164977.a.b	ENSGT00390000002548.i	ENSGT00940000155573.g.b.a	ENSGT00510000048626	ENSGT00940000155478.hb.b.a	ENSGT00940000164418.a.b.f	ENSGT00950000182985.a.b.a.a	ENSGT01030000234613.b.b.h.b	ENSGT00940000159555.v.b.d.a.b	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a	ENSGT00950000182772.A.a.a.a.a.a	ENSGT00940000173128.b	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000162120.f.a.a #22	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000157165.e.b.b	ENSGT00940000158592.f.a	ENSGT00390000005544	ENSGT00940000153635.A.f	ENSGT00940000157686.h	ENSGT01020000230360.c.b.b	ENSGT00390000005306.h.a.a	ENSGT00950000183206.a.a.c	ENSGT00940000159804.i	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000165190.B	ENSGT00940000165707.a	ENSGT01050000244814.a.a.b.b.b.b.b.c	ENSGT00940000166369.f
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00390000013989.b.e	ENSGT01100000263504.a.b.a.a	ENSGT00940000164977.a.b	ENSGT00390000002548.i	ENSGT00940000155573.g.b.a	ENSGT00510000048626	ENSGT00940000155478.hb.b.a	ENSGT00940000164418.a.b.f	ENSGT00950000182985.a.b.a.a	ENSGT01030000234613.b.b.h.b	ENSGT00940000159555.v.b.d.a.b	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a	ENSGT00950000182772.A.a.a.a.a.a	ENSGT00940000173784	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000162120.f.a.a #22	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000157165.e.b.b	ENSGT00940000158592.f.a	ENSGT00390000005544	ENSGT00940000153635.A.f	ENSGT00940000157686.h	ENSGT01020000230360.c.b.b	ENSGT00390000005306.h.a.a	ENSGT00950000183206.a.a.c	ENSGT00940000159804.i	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000165190.B	ENSGT00940000165707.a	ENSGT01050000244814.a.a.b.b.b.b.b.c	ENSGT00940000166369.f
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	33	fam168a (ENSOTSG00005044888)	plekhb1 (ENSOTSG00005044887)	ENSOTSG00005044886	crx (ENSOTSG00005044885)	ENSOTSG00005044884	nova1 (ENSOTSG00005044883)	alkbh6 (ENSOTSG00005044882)	ENSOTSG00005044881	dlb (ENSOTSG00005044880)	ppp1r14aa (ENSOTSG00005044879)	EXOC3L2 (ENSOTSG00005044878)	MARK4 (ENSOTSG00005044877)	ckma (ENSOTSG00005044876)	ENSOTSG00005044875	hnrnpl (ENSOTSG00005044743)	IRF2BP1 (ENSOTSG00005044741) #22	micu2 (ENSOTSG00005044738)	B3GAT1 (ENSOTSG00005044736)	BBX (ENSOTSG00005044735)	ift46 (ENSOTSG00005044543)	vps11 (ENSOTSG00005044419)	hyou1 (ENSOTSG00005038472)	h2ax1 (ENSOTSG00005038442)	zpr1 (ENSOTSG00005038245)	ENSOTSG00005037932	ENSOTSG00005037924	hspa8 (ENSOTSG00005036034)	ENSOTSG00005036020	bsx (ENSOTSG00005036014)	lim2.1 (ENSOTSG00005036012)	ntm (ENSOTSG00005036009)
Chinook salmon	MODERN SPECIES	33	plekhb1 (ENSOTSG00005001508)	fam168a (ENSOTSG00005001507)	ENSOTSG00005001505	crx (ENSOTSG00005001504)	ENSOTSG00005001503	NOVA2 (ENSOTSG00005001501) #19	alkbh6 (ENSOTSG00005001500)	ENSOTSG00005001499	dlb (ENSOTSG00005001497)	ppp1r14aa (ENSOTSG00005001495)	EXOC3L2 (ENSOTSG00005001493)	MARK4 (ENSOTSG00005001434)	ckma (ENSOTSG00005025137)	ENSOTSG00005025133	hnrnpl (ENSOTSG00005025038)	IRF2BP1 (ENSOTSG00005025036) #22	micu2 (ENSOTSG00005025034)	B3GAT1 (ENSOTSG00005025024)	BBX (ENSOTSG00005025022)	ift46 (ENSOTSG00005024951)	vps11 (ENSOTSG00005023954)	hyou1 (ENSOTSG00005022487)	h2ax1 (ENSOTSG00005022474)	zpr1 (ENSOTSG00005022289)	ENSOTSG00005022118	ENSOTSG00005022110	hspa8 (ENSOTSG00005020062)	ENSOTSG00005020026	bsx (ENSOTSG00005020024)	lim2.1 (ENSOTSG00005020023)	ntm (ENSOTSG00005020022)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005005660	ENSOKIG00005005649	ENSOKIG00005005642	ENSOKIG00005005637	nova1 (ENSOKIG00005005620)	alkbh6 (ENSOKIG00005005610)	ENSOKIG00005005601	dlb (ENSOKIG00005005580)	ppp1r14aa (ENSOKIG00005005564)	ENSOKIG00005005534	MARK4 (ENSOKIG00005005256)	ckma (ENSOKIG00005005219)	ckma (ENSOKIG00005005200)	ENSOKIG00005005166	HNRNPL (ENSOKIG00005004397)	IRF2BP1 (ENSOKIG00005004184) #22	micu2 (ENSOKIG00005004172)	B3GAT1 (ENSOKIG00005004153)	BBX (ENSOKIG00005004121)	ift46 (ENSOKIG00005004079)	vps11 (ENSOKIG00005003979)	hyou1 (ENSOKIG00005001730)	h2ax1 (ENSOKIG00005001462)	zpr1 (ENSOKIG00005001443)	ENSOKIG00005001385	ENSOKIG00005001368	hspa8 (ENSOKIG00005001342)	ENSOKIG00005001296	ENSOKIG00005001270	bsx (ENSOKIG00005001267)	lim2.1 (ENSOKIG00005001259)
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000003312	nova1 (ENSOMYG00000003195)	alkbh6 (ENSOMYG00000003168)	ENSOMYG00000069295	ENSOMYG00000065368	ENSOMYG00000045205	dlb (ENSOMYG00000064695)	ppp1r14aa (ENSOMYG00000077245)	ENSOMYG00000045193	ENSOMYG00000045153	ENSOMYG00000045135	ckma (ENSOMYG00000045128)	ENSOMYG00000045108	ENSOMYG00000049659	ENSOMYG00000044987	ENSOMYG00000044949 #22	ENSOMYG00000044945	ENSOMYG00000044930	ENSOMYG00000044913	ift46 (ENSOMYG00000044897)	vps11 (ENSOMYG00000044861)	hyou1 (ENSOMYG00000042674)	H2A (ENSOMYG00000057469)	zpr1 (ENSOMYG00000042375)	ENSOMYG00000042221	ENSOMYG00000042143	hspa8 (ENSOMYG00000041769)	ENSOMYG00000042088	bsx (ENSOMYG00000066402)	lim2.1 (ENSOMYG00000042069)	ntm (ENSOMYG00000041720)
Huchen	MODERN SPECIES	264			dlb (ENSHHUG00000050527)	ppp1r14aa (ENSHHUG00000050529)	EXOC3L2 (ENSHHUG00000050530)	ENSHHUG00000050531	ENSHHUG00000050532	ENSHHUG00000050533	ENSHHUG00000050534	ENSHHUG00000050535	ckma (ENSHHUG00000050536)	ENSHHUG00000050650	ENSHHUG00000050652	actb1 (ENSHHUG00000050662)	hnrnpl (ENSHHUG00000050668)	IRF2BP1 (ENSHHUG00000050711) #22	micu2 (ENSHHUG00000050712)	ENSHHUG00000050724	B3GAT1 (ENSHHUG00000050725)	BBX (ENSHHUG00000050727)	ift46 (ENSHHUG00000050741)	vps11 (ENSHHUG00000050754)	hyou1 (ENSHHUG00000050786)	h2ax1 (ENSHHUG00000050985)	zpr1 (ENSHHUG00000051004)	HSPA8 (ENSHHUG00000051052)	ENSHHUG00000051054	ENSHHUG00000051060	hspa8 (ENSHHUG00000051072)	ENSHHUG00000051561	bsx (ENSHHUG00000051568)
Salmoninae	ANCESTRAL SPECIES	35	ENSGT00940000164977.a.a	ENSGT00390000002548	ENSGT00940000155573.g.b.b	ENSGT00940000155478.hb.b.b	ENSGT00450000040324.a.a.a	ENSGT00940000166947	ENSGT00940000164418.a.b.e	ENSGT00950000182985.a.b.a.b	ENSGT01030000234613.b.b.h.a	ENSGT00940000159555.v.b.d.b	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT00910000144115.b.dc.a	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00390000014139	ENSGT00940000162120.f.a.b #22	ENSGT00950000183079.A.b.c.b.d	ENSGT00950000182942.b.e	ENSGT00940000157165.e.b.a	ENSGT00940000158592.f.b	ENSGT00940000153635.A.e	ENSGT00940000157686.g	ENSGT00940000164443.b.a	ENSGT01100000263506.a.d	ENSGT00940000157165.e.b.b	ENSGT00940000158592.f.a	ENSGT00390000005544	ENSGT00940000153635.A.f	ENSGT00940000157686.h	ENSGT01020000230360.c.b.b	ENSGT00390000005306.h
Salmoninae_a	ANCESTRAL SPECIES	44	ENSGT00390000002548.j	ENSGT00940000155573.g.b.b	ENSGT00940000155478.hb.b.b	ENSGT00450000040324.a.a.a	ENSGT00940000166947	ENSGT00940000164418.a.b.e	ENSGT00950000182985.a.b.a.b	ENSGT01030000234613.b.b.h.a	ENSGT00940000159555.v.b.d.a.a	ENSGT00950000182772.A.a.a.a.a.b.a.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT00910000144115.b.dc.a	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00390000014139	ENSGT00940000162120.f.a.b #22	ENSGT00950000183079.A.b.c.b.d	ENSGT00950000182942.b.e	ENSGT00940000157165.e.b.a	ENSGT00940000158592.f.b	ENSGT00940000153635.A.e	ENSGT00940000157686.g	ENSGT00940000164443.b.a	ENSGT00390000005306.g	ENSGT00950000183206.a.a.d	ENSGT00940000159804.j	ENSGT00920000150426	ENSGT00390000002823	ENSGT00940000165707.b	ENSGT00940000177959	ENSGT01000000220604
Salmo	ANCESTRAL SPECIES	17	ENSGT00990000213120	ENSGT00940000155478.hb.b.b	ENSGT00450000040324.a.a.a	ENSGT00940000166947	ENSGT00940000164418.a.b.e	ENSGT00950000182985.a.b.a.b	ENSGT01030000234613.b.b.h.a	ENSGT00940000159555.v.b.d.a.a	ENSGT00950000182772.A.a.a.a.a.b.a.a	ENSGT00950000182772.A.a.a.a.a.b.a.b	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT00940000173128.a	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00390000014139	ENSGT00940000162120.f.a.b #22	ENSGT00950000183079.A.b.c.b.d	ENSGT00950000182942.b.e	ENSGT00940000157165.e.b.a	ENSGT00940000158592.f.b	ENSGT00940000153635.A.e	ENSGT00940000157686.g	ENSGT00940000164443.b.a	ENSGT00390000005306.g	ENSGT00950000183206.a.a.d	ENSGT00940000159804.j	ENSGT00390000002823	ENSGT00940000165707.b	ENSGT00940000177959	ENSGT01000000220604	ENSGT00940000166369.e
River trout	MODERN SPECIES	10	CAPNS1 (ENSSTUG00000046718)	zgc:153990 (ENSSTUG00000046722)	ENSSTUG00000046727	ENSSTUG00000046731	dlb (ENSSTUG00000046740)	ppp1r14aa (ENSSTUG00000046753)	EXOC3L2 (ENSSTUG00000046759)	MARK4 (ENSSTUG00000046778)	ckma (ENSSTUG00000046897)	ckma (ENSSTUG00000046932)	nccrp1 (ENSSTUG00000002140)	slc8a2a (ENSSTUG00000002168)	ENSSTUG00000002265	hnrnpl (ENSSTUG00000002311)	ENSSTUG00000002718	IRF2BP1 (ENSSTUG00000002841) #22	micu2 (ENSSTUG00000002846)	ENSSTUG00000002887	B3GAT1 (ENSSTUG00000003010)	BBX (ENSSTUG00000003061)	vps11 (ENSSTUG00000003095)	hyou1 (ENSSTUG00000003329)	ENSSTUG00000005978	ENSSTUG00000005989	zpr1 (ENSSTUG00000006026)	ENSSTUG00000006308	ENSSTUG00000006717	jhy (ENSSTUG00000006761)	bsx (ENSSTUG00000006768)	lim2.1 (ENSSTUG00000006779)	ENSSTUG00000006795
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000075999	nova1 (ENSSSAG00000076005)	ENSSSAG00000075994	zgc:153990 (ENSSSAG00000108819)	ENSSSAG00000075989	dlb (ENSSSAG00000063795)	ppp1r14aa (ENSSSAG00000086720)	ENSSSAG00000075971	ENSSSAG00000075935	ckm2 (ENSSSAG00000075922)	ckma (ENSSSAG00000075928)	nccrp1 (ENSSSAG00000075920)	slc8a2a (ENSSSAG00000073560)	hnrnpl (ENSSSAG00000099862)	ENSSSAG00000073158	i2bp1 (ENSSSAG00000073147) #22	ENSSSAG00000121731	ENSSSAG00000073134	ENSSSAG00000100012	ENSSSAG00000073126	ENSSSAG00000073124	vps11 (ENSSSAG00000073092)	hyou1 (ENSSSAG00000070523)	ENSSSAG00000099399	ENSSSAG00000087660	h2ax1 (ENSSSAG00000114519)	ZPR1 (ENSSSAG00000070334)	crtam (ENSSSAG00000068877)	ENSSSAG00000068931	ENSSSAG00000068873	bsx (ENSSSAG00000068871)
Oncorhynchus	ANCESTRAL SPECIES	41	ENSGT00940000155573.g.b.b	ENSGT00940000155478.hb.b.b	ENSGT00450000040324.a.a.a	ENSGT00940000166947	ENSGT00940000164418.a.b.e	ENSGT00950000182985.a.b.a.b	ENSGT01030000234613.b.b.h.a	ENSGT00940000159555.v.b.d.b	ENSGT00940000159555.v.b.d.a.a	ENSGT00950000182772.A.a.a.a.a.b.a.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT00910000144115.b.dc.a	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00390000014139	ENSGT00940000162120.f.a.b #22	ENSGT00950000183079.A.b.c.b.d	ENSGT00950000182942.b.e	ENSGT00940000157165.e.b.a	ENSGT00940000158592.f.b	ENSGT00940000153635.A.e.a	ENSGT00940000157686.g	ENSGT00940000164443.b.a	ENSGT00390000005306.g	ENSGT00950000183206.a.a.d	ENSGT00940000159804.j	ENSGT00920000150426	ENSGT00390000002823	ENSGT00940000165707.b	ENSGT01050000244814.a.a.b.b.b.b.b.d	ENSGT01000000220604
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000006889	zgc:153990 (ENSOMYG00000006899)	ENSOMYG00000006924	dlb (ENSOMYG00000006961)	CKM (ENSOMYG00000007272)	ENSOMYG00000006984	ppp1r14aa (ENSOMYG00000061359)	ENSOMYG00000007158	ENSOMYG00000007181	ckma (ENSOMYG00000066323)	ENSOMYG00000052806	nccrp1 (ENSOMYG00000007311)	slc8a2a (ENSOMYG00000008190)	ENSOMYG00000008873	hnrnpl (ENSOMYG00000009052)	ENSOMYG00000009258 #22	ENSOMYG00000009310	ENSOMYG00000009397	ENSOMYG00000009473	ENSOMYG00000009522	ENSOMYG00000014549	vps11 (ENSOMYG00000009555)	ENSOMYG00000075603	vps11 (ENSOMYG00000009570)	hyou1 (ENSOMYG00000010478)	ENSOMYG00000013906	ENSOMYG00000014515	ENSOMYG00000031478	zpr1 (ENSOMYG00000014009)	ENSOMYG00000014562	crtam (ENSOMYG00000015507)
Oncorhynchus_a	ANCESTRAL SPECIES	43	ENSGT00390000002548.j	ENSGT00940000155573.g.b.b	ENSGT00940000155478.hb.b.b	ENSGT00450000040324.a.a.a	ENSGT00940000166947	ENSGT00940000164418.a.b.e	ENSGT00950000182985.a.b.a.b	ENSGT01030000234613.b.b.h.a	ENSGT00940000159555.v.b.d.a.a	ENSGT00950000182772.A.a.a.a.a.b.a.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT00910000144115.b.dc.a	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00390000014139	ENSGT00940000162120.f.a.b #22	ENSGT00950000183079.A.b.c.b.d	ENSGT00950000182942.b.e	ENSGT00940000157165.e.b.a	ENSGT00940000158592.f.b	ENSGT00940000153635.A.e.a	ENSGT00940000157686.g	ENSGT00940000164443.b.a	ENSGT00390000005306.g	ENSGT00950000183206.a.a.d	ENSGT00940000159804.j	ENSGT00920000150426	ENSGT00390000002823	ENSGT00940000165707.b	ENSGT01050000244814.a.a.b.b.b.b.b.d	ENSGT01000000220604
Chinook salmon	MODERN SPECIES	23	zgc:153990 (ENSOTSG00005038641)	ENSOTSG00005038643	dlb (ENSOTSG00005038647)	ppp1r14aa (ENSOTSG00005038653)	EXOC3L2 (ENSOTSG00005038655)	ENSOTSG00005038657	MARK4 (ENSOTSG00005038659)	ENSOTSG00005038660	ckma (ENSOTSG00005038662)	ckma (ENSOTSG00005038663)	nccrp1 (ENSOTSG00005038665)	slc8a2a (ENSOTSG00005038675)	ENSOTSG00005039044	hnrnpl (ENSOTSG00005039066)	ENSOTSG00005040325	IRF2BP1 (ENSOTSG00005040337) #22	micu2 (ENSOTSG00005040339)	ENSOTSG00005040345	B3GAT1 (ENSOTSG00005040363)	BBX (ENSOTSG00005040373)	vps11 (ENSOTSG00005040376)	vps11 (ENSOTSG00005040377)	hyou1 (ENSOTSG00005040396)	ENSOTSG00005040780	ENSOTSG00005040781	zpr1 (ENSOTSG00005040782)	ENSOTSG00005040844	ENSOTSG00005040847	ENSOTSG00005040852	bsx (ENSOTSG00005040855)	lim2.1 (ENSOTSG00005040857)
Coho salmon	MODERN SPECIES	20	ENSOKIG00005047032	zgc:153990 (ENSOKIG00005047028)	ENSOKIG00005047019	ENSOKIG00005047015	dlb (ENSOKIG00005047008)	ppp1r14aa (ENSOKIG00005046985)	ENSOKIG00005046979	EXOC3L2 (ENSOKIG00005046973)	ENSOKIG00005046943	ckma (ENSOKIG00005046933)	nccrp1 (ENSOKIG00005046918)	slc8a2a (ENSOKIG00005046872)	ENSOKIG00005046863	hnrnpl (ENSOKIG00005046194)	ENSOKIG00005046095	IRF2BP1 (ENSOKIG00005046088) #22	MICU2 (ENSOKIG00005046081)	ENSOKIG00005046029	B3GAT1 (ENSOKIG00005045964)	BBX (ENSOKIG00005045957)	vps11 (ENSOKIG00005045947)	hyou1 (ENSOKIG00005041683)	ENSOKIG00005041254	zpr1 (ENSOKIG00005040900)	ENSOKIG00005040492	ENSOKIG00005040422	ENSOKIG00005040356	ENSOKIG00005040344	bsx (ENSOKIG00005040320)	lim2.1 (ENSOKIG00005040299)	ENSOKIG00005040295
Huchen	MODERN SPECIES	144					ENSHHUG00000031080	ENSHHUG00000031075	tnfa (ENSHHUG00000031062)	atat1 (ENSHHUG00000031051)	ckma (ENSHHUG00000030958)	ENSHHUG00000030956	nccrp1 (ENSHHUG00000030948)	slc8a2a (ENSHHUG00000030442)	ENSHHUG00000030415	hnrnpl (ENSHHUG00000030362)	ENSHHUG00000030331	IRF2BP1 (ENSHHUG00000030328) #22	micu2 (ENSHHUG00000030316)	ENSHHUG00000030291	B3GAT1 (ENSHHUG00000030271)	ENSHHUG00000030258	BBX (ENSHHUG00000030256)	vps11 (ENSHHUG00000030067)	hyou1 (ENSHHUG00000029692)	ENSHHUG00000029666	H2BC8 (ENSHHUG00000029489)	ENSHHUG00000029463	zpr1 (ENSHHUG00000029282)	ENSHHUG00000024867	ENSHHUG00000024770	ENSHHUG00000024756	ENSHHUG00000024744
Northern pike	MODERN SPECIES	6	nova1 (ENSELUG00000017375)	alkbh6 (ENSELUG00000017352)	capns1a (ENSELUG00000017326)	zgc:153990 (ENSELUG00000017267)	ENSELUG00000017247	ENSELUG00000033905	dlb (ENSELUG00000017222)	ppp1r14aa (ENSELUG00000017185)	EXOC3L2 (ENSELUG00000017170)	MARK4 (ENSELUG00000017104)	ENSELUG00000031972	ckma (ENSELUG00000017033)	slc8a2a (ENSELUG00000017003)	srsf7a (ENSELUG00000016922)	hnrnpl (ENSELUG00000016863)	IRF2BP1 (ENSELUG00000016642) #22	micu2 (ENSELUG00000016716)	GLB1L2 (ENSELUG00000016624)	B3GAT1 (ENSELUG00000016581)	BBX (ENSELUG00000016555)	ift46 (ENSELUG00000016513)	vps11 (ENSELUG00000016477)	hyou1 (ENSELUG00000016398)	h2ax1 (ENSELUG00000008621)	zpr1 (ENSELUG00000016289)	ENSELUG00000016261	ENSELUG00000016236	hspa8 (ENSELUG00000016207)	ENSELUG00000016124	jhy (ENSELUG00000025257)	bsx (ENSELUG00000016096)
Acanthomorphata	ANCESTRAL SPECIES	14	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00940000162179.e.a.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Euacanthomorphacea	ANCESTRAL SPECIES	19	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Aplocheiloidei	ANCESTRAL SPECIES	275													ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b
Mangrove rivulus	MODERN SPECIES	546															hnrnpl (ENSKMAG00000018374)	irf2bp1 (ENSKMAG00000018349) #22	micu2 (ENSKMAG00000018328)	ENSKMAG00000018299
Turquoise killifish	MODERN SPECIES	1620	acer3 (ENSNFUG00015008642)	POLI (ENSNFUG00015008647)	RAB27B (ENSNFUG00015008650)	ENSNFUG00015008655	ENSNFUG00015008657	ENSNFUG00015008658	GDPD5 (ENSNFUG00015008663)	WSCD1 (ENSNFUG00015008667)	ENSNFUG00015008671	usp25 (ENSNFUG00015008710)	ENSNFUG00015009276	ENSNFUG00015009281	NCCRP1 (ENSNFUG00015009292)	slc8a2a (ENSNFUG00015009315)	Nfu_g_1_017124 (ENSNFUG00015009426)	Nfu_g_1_017135 (ENSNFUG00015009563) #22	EFHA1 (ENSNFUG00015009569)	ENSNFUG00015009584	bhlha9 (ENSNFUG00015009595)	zgc:153990 (ENSNFUG00015009613)	ckma (ENSNFUG00015009641)	MARK4 (ENSNFUG00015010697)	PPP1R14AA (ENSNFUG00015010762)	dlb (ENSNFUG00015010772)	CAPNS1A (ENSNFUG00015010782)	nova1 (ENSNFUG00015010809)	kptn (ENSNFUG00015010864)	crx (ENSNFUG00015010903)	ENSNFUG00015010917	ARHGAP32 (ENSNFUG00015011007)	ENSNFUG00015012220
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Poeciliinae	ANCESTRAL SPECIES	17				ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Poecilia	ANCESTRAL SPECIES	7	ENSGT00950000183064.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00940000164977.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
NAME_6	ANCESTRAL SPECIES	101	ENSGT00950000183064.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00940000164977.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999
Amazon molly	MODERN SPECIES	330	ARHGAP32 (ENSPFOG00000018284)	ENSPFOG00000018274	crx (ENSPFOG00000018273)	slc8a2a (ENSPFOG00000018239)	nccrp1 (ENSPFOG00000018217)	ckma (ENSPFOG00000018207)	MARK4 (ENSPFOG00000018109)	ENSPFOG00000018071	ppp1r14aa (ENSPFOG00000018063)	dlb (ENSPFOG00000018044)	zgc:153990 (ENSPFOG00000018038)	capns1b (ENSPFOG00000018021)	nova1 (ENSPFOG00000018009)	kptn (ENSPFOG00000017987)	hnrnpl (ENSPFOG00000017949)	irf2bp1 (ENSPFOG00000020807) #22	micu2 (ENSPFOG00000017927)	ENSPFOG00000017901	bhlha9 (ENSPFOG00000017896)	WSCD1 (ENSPFOG00000017879)	usp25 (ENSPFOG00000017727)	ENSPFOG00000017715
Sailfin molly	MODERN SPECIES	277	ARHGAP32 (ENSPLAG00000015060)	ENSPLAG00000015073	crx (ENSPLAG00000015131)	slc8a2a (ENSPLAG00000015157)	nccrp1 (ENSPLAG00000015175)	ckma (ENSPLAG00000015197)	MARK4 (ENSPLAG00000015238)	ENSPLAG00000015256	ppp1r14aa (ENSPLAG00000015261)	dlb (ENSPLAG00000015280)	zgc:153990 (ENSPLAG00000015288)	capns1b (ENSPLAG00000015296)	nova1 (ENSPLAG00000015391)	kptn (ENSPLAG00000015407)	hnrnpl (ENSPLAG00000015433)	irf2bp1 (ENSPLAG00000015439) #22	micu2 (ENSPLAG00000015446)	ENSPLAG00000015460	bhlha9 (ENSPLAG00000015472)
Guppy	MODERN SPECIES	444	ARHGAP32 (ENSPREG00000010772)	ENSPREG00000010865	crx (ENSPREG00000010876)	slc8a2a (ENSPREG00000010899)	nccrp1 (ENSPREG00000010962)	ckma (ENSPREG00000011025)	MARK4 (ENSPREG00000011134)	ENSPREG00000011202	ppp1r14aa (ENSPREG00000011215)	dlb (ENSPREG00000011227)	zgc:153990 (ENSPREG00000011254)	capns1b (ENSPREG00000011293)	nova1 (ENSPREG00000011614)	kptn (ENSPREG00000011640)	hnrnpl (ENSPREG00000011662)	irf2bp1 (ENSPREG00000011689) #22	micu2 (ENSPREG00000011698)	ENSPREG00000011736	bhlha9 (ENSPREG00000011763)	ENSPREG00000011772	slc8a4a (ENSPREG00000011792)	ENSPREG00000011835	gng3 (ENSPREG00000011851)	banf1 (ENSPREG00000011871)	prdx5 (ENSPREG00000011912)	esrra (ENSPREG00000011942)	KCNK4 (ENSPREG00000011969)	ENSPREG00000011995	adssl (ENSPREG00000012013)	mthfs (ENSPREG00000012059)	jam3b (ENSPREG00000012116)
Platyfish	MODERN SPECIES	2	ENSXMAG00000017861	stoml3b (ENSXMAG00000017867)	ENSXMAG00000023201	kptn (ENSXMAG00000017878)	nova1 (ENSXMAG00000017880)	capns1b (ENSXMAG00000017885)	zgc:153990 (ENSXMAG00000023349)	dlb (ENSXMAG00000017891)	ppp1r14aa (ENSXMAG00000017904)	ENSXMAG00000017905	MARK4 (ENSXMAG00000017913)	ckma (ENSXMAG00000017927)	nccrp1 (ENSXMAG00000017936)	slc8a2a (ENSXMAG00000017941)	hnrnpl (ENSXMAG00000019070)	irf2bp1 (ENSXMAG00000019430) #22	micu2 (ENSXMAG00000018701)	ENSXMAG00000024550	ENSXMAG00000018695	bhlha9 (ENSXMAG00000026692)	WSCD1 (ENSXMAG00000014061)	usp25 (ENSXMAG00000014035)	ENSXMAG00000028626	ENSXMAG00000029062	GDPD5 (ENSXMAG00000014022)	serpinh1a (ENSXMAG00000014013)	acer3 (ENSXMAG00000014002)	ENSXMAG00000028713	MMP1 (ENSXMAG00000021837)	ENSXMAG00000027284	MMP1 (ENSXMAG00000027356)
NAME_4	ANCESTRAL SPECIES	148	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b.f	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b
Sheepshead minnow	MODERN SPECIES	446	slc8a4a (ENSCVAG00000018286)	CNIH2 (ENSCVAG00000018322)	tm7sf2 (ENSCVAG00000018398)	vps51 (ENSCVAG00000018497)	frmd8 (ENSCVAG00000018512)	rom1a (ENSCVAG00000018523)	zfpl1 (ENSCVAG00000000486)	FLRT1 (ENSCVAG00000018532)	ENSCVAG00000018543	rps6ka4 (ENSCVAG00000018631)	stip1 (ENSCVAG00000018640)	ENSCVAG00000018672	AKAP10 (ENSCVAG00000018686)	slc8a2a (ENSCVAG00000018724)	hnrnpl (ENSCVAG00000018770)	irf2bp1 (ENSCVAG00000018779) #22	micu2 (ENSCVAG00000018792)	ENSCVAG00000018808	bhlha9 (ENSCVAG00000018820)	tmprss2 (ENSCVAG00000000492)	acat1 (ENSCVAG00000018831)	mmp13a (ENSCVAG00000018842)	ENSCVAG00000018850	acer3 (ENSCVAG00000018861)
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	2248	ENSFHEG00000004538	crx (ENSFHEG00000004555)	kptn (ENSFHEG00000004605)	nova1 (ENSFHEG00000004626)	capns1b (ENSFHEG00000004645)	zgc:153990 (ENSFHEG00000004655)	dlb (ENSFHEG00000004692)	ENSFHEG00000000723	ENSFHEG00000004721	ENSFHEG00000004760	ckma (ENSFHEG00000004795)	nccrp1 (ENSFHEG00000004820)	slc8a2a (ENSFHEG00000004856)	hnrnpl (ENSFHEG00000004874)	irf2bp1 (ENSFHEG00000004879) #22	irf2bp1 (ENSFHEG00000004882) #22	micu2 (ENSFHEG00000004892)	ENSFHEG00000004918	bhlha9 (ENSFHEG00000004931)	ENSFHEG00000004935	ENSFHEG00000004945	usp25 (ENSFHEG00000005107)	ENSFHEG00000005132	samsn1b (ENSFHEG00000005210)	GDPD5 (ENSFHEG00000005231)
Mummichog	MODERN SPECIES	2248	ARHGAP32 (ENSFHEG00000000117)	ENSFHEG00000004538	crx (ENSFHEG00000004555)	kptn (ENSFHEG00000004605)	nova1 (ENSFHEG00000004626)	capns1b (ENSFHEG00000004645)	zgc:153990 (ENSFHEG00000004655)	dlb (ENSFHEG00000004692)	ENSFHEG00000000723	ENSFHEG00000004721	ENSFHEG00000004760	ckma (ENSFHEG00000004795)	nccrp1 (ENSFHEG00000004820)	slc8a2a (ENSFHEG00000004856)	hnrnpl (ENSFHEG00000004874)	irf2bp1 (ENSFHEG00000004879) #22	irf2bp1 (ENSFHEG00000004882) #22	micu2 (ENSFHEG00000004892)	ENSFHEG00000004918	bhlha9 (ENSFHEG00000004931)	ENSFHEG00000004935	ENSFHEG00000004945	usp25 (ENSFHEG00000005107)	ENSFHEG00000005132	samsn1b (ENSFHEG00000005210)	GDPD5 (ENSFHEG00000005231)
Oryzias	ANCESTRAL SPECIES	31		ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000159690.b	ENSGT00940000154678.a.b	ENSGT00950000183089.c.a.k.b.b.i	ENSGT01100000263514.A.f.x.b.a.b	ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.a.b	ENSGT00940000156944.a.a	ENSGT00940000170476	ENSGT00550000074939	ENSGT00940000156835.k
Oryzias_b	ANCESTRAL SPECIES	62	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000159690.b	ENSGT00940000154678.a.b	ENSGT00950000183089.c.a.k.b.b.i	ENSGT01100000263514.A.f.x.b.a.b	ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263569.a.b.a.b.a.a.b	ENSGT01020000230360.c.b.b	ENSGT00940000156944.a.a	ENSGT00940000170476
Javanese ricefish	MODERN SPECIES	5	crx (ENSOJAG00000010856)	kptn (ENSOJAG00000010789)	nova1 (ENSOJAG00000010732)	capns1b (ENSOJAG00000010708)	zgc:153990 (ENSOJAG00000010696)	dlb (ENSOJAG00000010685)	ppp1r14aa (ENSOJAG00000010676)	ENSOJAG00000010571	MARK4 (ENSOJAG00000010267)	ENSOJAG00000010224	ckma (ENSOJAG00000010121)	ENSOJAG00000010110	nccrp1 (ENSOJAG00000010104)	slc8a2a (ENSOJAG00000010019)	hnrnpl (ENSOJAG00000009629)	irf2bp1 (ENSOJAG00000009571) #22	micu2 (ENSOJAG00000009563)	ENSOJAG00000009547	bhlha9 (ENSOJAG00000009523)	ENSOJAG00000009484	GALNT10 (ENSOJAG00000009039)	ENSOJAG00000008972	ENSOJAG00000008952	ENSOJAG00000008915	ins (ENSOJAG00000008767)	ENSOJAG00000008711	ENSOJAG00000008689	acer3 (ENSOJAG00000008644)	mmp13a (ENSOJAG00000008370)	acat1 (ENSOJAG00000007702)	ENSOJAG00000007663
Indian medaka	MODERN SPECIES	39		ENSOMEG00000015430	kptn (ENSOMEG00000015452)	nova1 (ENSOMEG00000015479)	capns1b (ENSOMEG00000015522)	zgc:153990 (ENSOMEG00000015554)	dlb (ENSOMEG00000015582)	ppp1r14aa (ENSOMEG00000015592)	ENSOMEG00000015621	MARK4 (ENSOMEG00000015709)	ENSOMEG00000015743	ckma (ENSOMEG00000015762)	nccrp1 (ENSOMEG00000015782)	slc8a2a (ENSOMEG00000015888)	hnrnpl (ENSOMEG00000015965)	irf2bp1 (ENSOMEG00000015992) #22	micu2 (ENSOMEG00000016017)	ENSOMEG00000016078	bhlha9 (ENSOMEG00000016093)	WSCD1 (ENSOMEG00000016108)	usp25 (ENSOMEG00000016235)	ENSOMEG00000016284	ENSOMEG00000000408	dscama (ENSOMEG00000016538)	ENSOMEG00000016588	ENSOMEG00000016594	ENSOMEG00000016656	ENSOMEG00000016698	ENSOMEG00000016737	ENSOMEG00000016750	ADRA1B (ENSOMEG00000016769)
Oryzias_a	ANCESTRAL SPECIES	70	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.a.ib	ENSGT00940000164977.b.a.b	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000159690.b	ENSGT00940000154678.a.b	ENSGT00950000183089.c.a.k.b.b.i	ENSGT01020000230360.c.b.a.a.a.a.a.d	ENSGT01060000248528.b	ENSGT00990000203553.c.a.a.a.b.o
Chinese medaka	MODERN SPECIES	83															hnrnpl (ENSOSIG00000000649)	irf2bp1 (ENSOSIG00000000740) #22	micu2 (ENSOSIG00000000745)	ENSOSIG00000000751	bhlha9 (ENSOSIG00000000757)	WSCD1 (ENSOSIG00000000761)	usp25 (ENSOSIG00000000897)	NRIP1 (ENSOSIG00000005990)	GDPD5 (ENSOSIG00000006002)	dscama (ENSOSIG00000006020)
Japanese Medaka HdrR	MODERN SPECIES	5	ENSORLG00000000324	kptn (ENSORLG00000000337)	nova1 (ENSORLG00000000350)	capns1b (ENSORLG00000000369)	zgc:153990 (ENSORLG00000023232)	dlb (ENSORLG00000000378)	ENSORLG00000000382	ppp1r14aa (ENSORLG00000000395)	ENSORLG00000023651	ENSORLG00000025181	MARK4 (ENSORLG00000000445)	ckma (ENSORLG00000000449)	nccrp1 (ENSORLG00000000459)	slc8a2a (ENSORLG00000000474)	hnrnpl (ENSORLG00000000486)	irf2bp1 (ENSORLG00000030526) #22	micu2 (ENSORLG00000028459)	ENSORLG00000000510	bhlha9 (ENSORLG00000022043)	WSCD1 (ENSORLG00000000526)	ENSORLG00000025694	usp25 (ENSORLG00000000577)	ENSORLG00000000586	ENSORLG00000000623	dscama (ENSORLG00000000669)	ENSORLG00000000680	ENSORLG00000000693	H2BC18 (ENSORLG00000027566)	ENSORLG00000011790	ENSORLG00000027574	ENSORLG00000000704
Ovalentaria_B	ANCESTRAL SPECIES	26	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Pomacentridae	ANCESTRAL SPECIES	42	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a.y.a	ENSGT00940000154907.a.a.y.b	ENSGT00940000167100.a	ENSGT01030000234626.E
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a.y.a	ENSGT00940000154907.a.a.y.b	ENSGT00940000167100.a	ENSGT01030000234626.E
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a.y.a	ENSGT00940000154907.a.a.y.b	ENSGT00940000167100.a	ENSGT01030000234626.E
Clown anemonefish	MODERN SPECIES	1540																irf2bp1 (ENSAOCG00000004903) #22	micu2 (ENSAOCG00000004913)	ENSAOCG00000004924	bhlha9 (ENSAOCG00000004931)	WSCD1 (ENSAOCG00000004944)	usp25 (ENSAOCG00000005013)	ENSAOCG00000005025	samsn1b (ENSAOCG00000005077)	GDPD5 (ENSAOCG00000005095)
Orange clownfish	MODERN SPECIES	6	ARHGAP32 (ENSAPEG00000012706)	ENSAPEG00000012567	crx (ENSAPEG00000012552)	kptn (ENSAPEG00000012526)	nova1 (ENSAPEG00000012502)	capns1b (ENSAPEG00000012476)	zgc:153990 (ENSAPEG00000012465)	dlb (ENSAPEG00000012433)	ppp1r14aa (ENSAPEG00000012424)	ENSAPEG00000012388	MARK4 (ENSAPEG00000012325)	ckma (ENSAPEG00000012285)	nccrp1 (ENSAPEG00000012256)	slc8a2a (ENSAPEG00000012198)	hnrnpl (ENSAPEG00000012139)	irf2bp1 (ENSAPEG00000012133) #22	micu2 (ENSAPEG00000012118)	ENSAPEG00000012046	bhlha9 (ENSAPEG00000012026)	WSCD1 (ENSAPEG00000012009)	usp25 (ENSAPEG00000011877)	ENSAPEG00000011870	samsn1b (ENSAPEG00000011851)	GDPD5 (ENSAPEG00000011819)	serpinh1a (ENSAPEG00000011784)	acer3 (ENSAPEG00000011767)	ENSAPEG00000011554	ENSAPEG00000011222	MMP1 (ENSAPEG00000010890)	mmp30 (ENSAPEG00000010871)	acat1 (ENSAPEG00000010860)
Spiny chromis	MODERN SPECIES	587	ARHGAP32 (ENSAPOG00000002093)	ENSAPOG00000002114	crx (ENSAPOG00000002128)	kptn (ENSAPOG00000000044)	nova1 (ENSAPOG00000002171)	capns1b (ENSAPOG00000002188)	zgc:153990 (ENSAPOG00000002204)	dlb (ENSAPOG00000002230)	ppp1r14aa (ENSAPOG00000002244)	ENSAPOG00000002258	MARK4 (ENSAPOG00000002316)	ckma (ENSAPOG00000002355)	nccrp1 (ENSAPOG00000002373)	slc8a2a (ENSAPOG00000002401)	hnrnpl (ENSAPOG00000002415)	irf2bp1 (ENSAPOG00000002422) #22
Bicolor damselfish	MODERN SPECIES	1438				nova1 (ENSSPAG00000001033)	capns1b (ENSSPAG00000001073)	zgc:153990 (ENSSPAG00000001083)	dlb (ENSSPAG00000001095)	ppp1r14aa (ENSSPAG00000001123)	ENSSPAG00000001138	MARK4 (ENSSPAG00000001146)	ckma (ENSSPAG00000001188)	ENSSPAG00000001221	nccrp1 (ENSSPAG00000001235)	slc8a2a (ENSSPAG00000001261)	hnrnpl (ENSSPAG00000001307)	irf2bp1 (ENSSPAG00000001318) #22	micu2 (ENSSPAG00000001335)
Cichlidae	ANCESTRAL SPECIES	4	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a	ENSGT00940000154678.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	29	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a.x.a	ENSGT00940000154907.a.a.w	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	39	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a.x.a	ENSGT00940000154907.a.a.w	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Haplochromini	ANCESTRAL SPECIES	36	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a.x.a.a	ENSGT00940000154907.a.a.x.a.b	ENSGT00940000154907.a.a.w	ENSGT01030000234626.E
Burton s mouthbrooder	MODERN SPECIES	464					capns1b (ENSHBUG00000005884)	zgc:153990 (ENSHBUG00000005892)	dlb (ENSHBUG00000005938)	ppp1r14aa (ENSHBUG00000005946)	ENSHBUG00000005970	MARK4 (ENSHBUG00000006094)	ENSHBUG00000006120	ckma (ENSHBUG00000006144)	nccrp1 (ENSHBUG00000006154)	slc8a2a (ENSHBUG00000006215)	hnrnpl (ENSHBUG00000006269)	irf2bp1 (ENSHBUG00000006281) #22	micu2 (ENSHBUG00000006336)	ENSHBUG00000006350	bhlha9 (ENSHBUG00000006360)	WSCD1 (ENSHBUG00000006371)	usp25 (ENSHBUG00000006607)	ENSHBUG00000006631	samsn1b (ENSHBUG00000006652)	GDPD5 (ENSHBUG00000006664)	serpinh1a (ENSHBUG00000006698)	acer3 (ENSHBUG00000006751)	ENSHBUG00000007463	ENSHBUG00000007499	ENSHBUG00000007537	acat1 (ENSHBUG00000007546)	tmprss2 (ENSHBUG00000007569)
Haplochromini_A	ANCESTRAL SPECIES	41	ENSGT01100000263504.a.b.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00980000198690.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a.x.a.a	ENSGT00940000154907.a.a.x.a.b	ENSGT00940000154907.a.a.w
Haplochromini_B	ANCESTRAL SPECIES	46	ENSGT01100000263504.a.b.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00980000198690.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a.x.a.a	ENSGT00940000154907.a.a.x.a.b	ENSGT00940000154907.a.a.w
Zebra mbuna	MODERN SPECIES	1092	ENSMZEG00005023353	crx (ENSMZEG00005023354)	kptn (ENSMZEG00005023357)	nova1 (ENSMZEG00005023362)	capns1b (ENSMZEG00005023364)	zgc:153990 (ENSMZEG00005023367)	dlb (ENSMZEG00005023369)	ppp1r14aa (ENSMZEG00005023370)	ENSMZEG00005023372	MARK4 (ENSMZEG00005023376)	ckma (ENSMZEG00005023380)	ENSMZEG00005023381	nccrp1 (ENSMZEG00005023383)	slc8a2a (ENSMZEG00005023386)	hnrnpl (ENSMZEG00005023388)	irf2bp1 (ENSMZEG00005023394) #22	micu2 (ENSMZEG00005023395)	ENSMZEG00005023396	bhlha9 (ENSMZEG00005023399)	WSCD1 (ENSMZEG00005023401)	usp25 (ENSMZEG00005023407)	ENSMZEG00005023421	samsn1b (ENSMZEG00005023423)	GDPD5 (ENSMZEG00005023426)	serpinh1a (ENSMZEG00005023428)	acer3 (ENSMZEG00005023430)	ENSMZEG00005023432	ENSMZEG00005023444	ENSMZEG00005023446	ENSMZEG00005023448	acat1 (ENSMZEG00005023449)
Eastern happy	MODERN SPECIES	1	crx (ENSACLG00000002886)	ENSACLG00000002904	kptn (ENSACLG00000002914)	nova1 (ENSACLG00000003002)	capns1b (ENSACLG00000003030)	zgc:153990 (ENSACLG00000003052)	dlb (ENSACLG00000003314)	ppp1r14aa (ENSACLG00000003348)	ENSACLG00000003357	MARK4 (ENSACLG00000003377)	ckma (ENSACLG00000003506)	ENSACLG00000003530	nccrp1 (ENSACLG00000003541)	slc8a2a (ENSACLG00000003573)	hnrnpl (ENSACLG00000003627)	irf2bp1 (ENSACLG00000003704) #22	micu2 (ENSACLG00000003711)	ENSACLG00000003723	ENSACLG00000003757	ENSACLG00000003773	ENSACLG00000004185	bsx (ENSACLG00000004204)	HSPA8 (ENSACLG00000004224)	ENSACLG00000004293	ENSACLG00000004304	h2ax1 (ENSACLG00000004315)	hyou1 (ENSACLG00000004327)	vps11 (ENSACLG00000004406)	ENSACLG00000004459	ENSACLG00000004523	ENSACLG00000004539 #37
P. nyererei	MODERN SPECIES	392	ENSPNYG00000015474	crx (ENSPNYG00000015489)	kptn (ENSPNYG00000015503)	nova1 (ENSPNYG00000015521)	capns1b (ENSPNYG00000015538)	zgc:153990 (ENSPNYG00000015565)	dlb (ENSPNYG00000015585)	ppp1r14aa (ENSPNYG00000015601)	ENSPNYG00000015613	MARK4 (ENSPNYG00000015630)	ckma (ENSPNYG00000015663)	ENSPNYG00000015687	nccrp1 (ENSPNYG00000015694)	slc8a2a (ENSPNYG00000015720)	hnrnpl (ENSPNYG00000015767)	irf2bp1 (ENSPNYG00000015815) #22	micu2 (ENSPNYG00000015822)	ENSPNYG00000015839	bhlha9 (ENSPNYG00000015882)	WSCD1 (ENSPNYG00000015892)	usp25 (ENSPNYG00000015949)	ENSPNYG00000016061	samsn1b (ENSPNYG00000016067)	GDPD5 (ENSPNYG00000016092)	serpinh1a (ENSPNYG00000016156)	acer3 (ENSPNYG00000016176)	ENSPNYG00000016240
Lyretail cichlid	MODERN SPECIES	474												nccrp1 (ENSNBRG00000001461)	slc8a2a (ENSNBRG00000001499)	ENSNBRG00000001539	hnrnpl (ENSNBRG00000001563)	irf2bp1 (ENSNBRG00000001585) #22	micu2 (ENSNBRG00000001593)	ENSNBRG00000001644	bhlha9 (ENSNBRG00000001696)	WSCD1 (ENSNBRG00000001721)	usp25 (ENSNBRG00000001768)	ENSNBRG00000001842	samsn1b (ENSNBRG00000001850)	GDPD5 (ENSNBRG00000001878)	serpinh1a (ENSNBRG00000001959)	acer3 (ENSNBRG00000001968)	ENSNBRG00000001994	mmp13a (ENSNBRG00000002102)	acat1 (ENSNBRG00000002298)	dscama (ENSNBRG00000002366)	ENSNBRG00000002556
Nile tilapia	MODERN SPECIES	1	crx (ENSONIG00000015806)	kptn (ENSONIG00000015807)	nova1 (ENSONIG00000015810)	ENSONIG00000029570	capns1b (ENSONIG00000027340)	zgc:153990 (ENSONIG00000015818)	dlb (ENSONIG00000015819)	ppp1r14aa (ENSONIG00000015821)	ENSONIG00000015824	ENSONIG00000029399	MARK4 (ENSONIG00000015826)	ckma (ENSONIG00000015836)	nccrp1 (ENSONIG00000039616)	slc8a2a (ENSONIG00000015841)	hnrnpl (ENSONIG00000015848)	irf2bp1 (ENSONIG00000020656) #22	micu2 (ENSONIG00000015851)	ENSONIG00000029441	bhlha9 (ENSONIG00000032821)	ENSONIG00000038513	WSCD1 (ENSONIG00000015855)	usp25 (ENSONIG00000015857)	ENSONIG00000040889	ENSONIG00000015874	GDPD5 (ENSONIG00000015867)	serpinh1a (ENSONIG00000015878)	acer3 (ENSONIG00000037831)	ENSONIG00000037417	ENSONIG00000015881	acat1 (ENSONIG00000015894)	tmprss2 (ENSONIG00000015898)
Midas cichlid	MODERN SPECIES	590														ENSACIG00000000508	hnrnpl (ENSACIG00000000531)	irf2bp1 (ENSACIG00000000551) #22	micu2 (ENSACIG00000000561)
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Tetraodontidae	ANCESTRAL SPECIES	201																ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000167170	ENSGT00940000165615.a
Fugu	MODERN SPECIES	6			dscama (ENSTRUG00000030223)	acat1 (ENSTRUG00000002608)	mmpf1 (ENSTRUG00000003445)	ENSTRUG00000027942	acer3 (ENSTRUG00000022027)	ENSTRUG00000027304	ENSTRUG00000031529	ENSTRUG00000028851	GDPD5 (ENSTRUG00000003607)	ENSTRUG00000027101	usp25 (ENSTRUG00000000019)	slc8a2a (ENSTRUG00000000015)	ENSTRUG00000030190	irf2bp1 (ENSTRUG00000000014) #22	micu2 (ENSTRUG00000000009)	ENSTRUG00000032510	ENSTRUG00000001066	ENSTRUG00000021532	ckma (ENSTRUG00000001749)	ENSTRUG00000001995	ENSTRUG00000002338	GLB1L2 (ENSTRUG00000002407)	ei24 (ENSTRUG00000004404)	stt3a (ENSTRUG00000004771)	ENSTRUG00000022614	thap12a (ENSTRUG00000005307)	ENSTRUG00000005439	ENSTRUG00000029300	ENSTRUG00000008094
Tetraodon	MODERN SPECIES	26	ENSTNIG00000006115	ENSTNIG00000006114	pcgf5a (ENSTNIG00000006113)	ANKRD1 (ENSTNIG00000006112)	ENSTNIG00000006111	PTPRO (ENSTNIG00000006110)	cradd (ENSTNIG00000006109)	socs2 (ENSTNIG00000006108)	ncaph2 (ENSTNIG00000006107)	sco2 (ENSTNIG00000006106)	ENSTNIG00000001120	ENSTNIG00000006817	SLITRK2 (ENSTNIG00000006071)	usp25 (ENSTNIG00000006070)	slc8a2a (ENSTNIG00000006069)	irf2bp1 (ENSTNIG00000001701) #22	micu2 (ENSTNIG00000006068)	ENSTNIG00000006067	DOK7 (ENSTNIG00000006060)	HGFAC (ENSTNIG00000006059)	ENSTNIG00000006058	dtx4a (ENSTNIG00000006057)	coro1b (ENSTNIG00000006056)	osbp (ENSTNIG00000006055)	ACY3 (ENSTNIG00000006054)	cldnd1a (ENSTNIG00000006053)	PIK3C2B (ENSTNIG00000006021)	ENSTNIG00000006020	ENSTNIG00000006019	ENSTNIG00000006018	ENSTNIG00000006017
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
European seabass	MODERN SPECIES	4	ENSDLAG00005005990	ENSDLAG00005029980	ENSDLAG00005006029	nova1 (ENSDLAG00005006248)	zgc:153990 (ENSDLAG00005006619)	dlb (ENSDLAG00005006620)	ppp1r14aa (ENSDLAG00005006624)	ENSDLAG00005006657	ENSDLAG00005027249	ENSDLAG00005006717	ckma (ENSDLAG00005006316)	nccrp1 (ENSDLAG00005027414)	slc8a2a (ENSDLAG00005006825)	hnrnpl (ENSDLAG00005007069)	ENSDLAG00005033665	ENSDLAG00005007277 #22	ENSDLAG00005007297	bhlha9 (ENSDLAG00005007435)	ENSDLAG00005007446	usp25 (ENSDLAG00005007491)	ENSDLAG00005007934	samsn1b (ENSDLAG00005007939)	ENSDLAG00005007979	serpinh1a (ENSDLAG00005008100)	ENSDLAG00005008108	mmp13a (ENSDLAG00005008130)	mmp30 (ENSDLAG00005008394)	acat1 (ENSDLAG00005008426)	tmprss2 (ENSDLAG00005008648)	dscama (ENSDLAG00005008685)	ENSDLAG00005008863
Large yellow croaker	MODERN SPECIES	493	ARHGAP32 (ENSLCRG00005022640)	ENSLCRG00005022676	crx (ENSLCRG00005022677)	kptn (ENSLCRG00005022678)	nova1 (ENSLCRG00005022694)	capns1b (ENSLCRG00005022696)	zgc:153990 (ENSLCRG00005022698)	dlb (ENSLCRG00005022699)	ppp1r14aa (ENSLCRG00005001397)	ENSLCRG00005001403	ENSLCRG00005001422	ckma (ENSLCRG00005003148)	nccrp1 (ENSLCRG00005003153)	slc8a2a (ENSLCRG00005003165)	hnrnpl (ENSLCRG00005003189)	irf2bp1 (ENSLCRG00005003304) #22	micu2 (ENSLCRG00005003306)	ENSLCRG00005003312	bhlha9 (ENSLCRG00005003319)	WSCD1 (ENSLCRG00005003321)	usp25 (ENSLCRG00005003391)	ENSLCRG00005006262	samsn1b (ENSLCRG00005006263)	GDPD5 (ENSLCRG00005006267)	serpinh1a (ENSLCRG00005006275)	acer3 (ENSLCRG00005006276)	ENSLCRG00005006278	ENSLCRG00005006280	ENSLCRG00005006392	ENSLCRG00005006287	ENSLCRG00005006395
Gilthead seabream	MODERN SPECIES	4	ARHGAP32 (ENSSAUG00010001872)	ENSSAUG00010001743	kptn (ENSSAUG00010001463)	nova1 (ENSSAUG00010017389)	capns1b (ENSSAUG00010017388)	zgc:153990 (ENSSAUG00010017387)	dlb (ENSSAUG00010017385)	ppp1r14aa (ENSSAUG00010017384)	ENSSAUG00010017382	MARK4 (ENSSAUG00010017309)	ckma (ENSSAUG00010017305)	crx (ENSSAUG00010017303)	nccrp1 (ENSSAUG00010017301)	slc8a2a (ENSSAUG00010017299)	hnrnpl (ENSSAUG00010017179)	irf2bp1 (ENSSAUG00010017164) #22	micu2 (ENSSAUG00010017159)	ENSSAUG00010017151	bhlha9 (ENSSAUG00010017148)	WSCD1 (ENSSAUG00010017144)	usp25 (ENSSAUG00010014776)	ENSSAUG00010014715	ENSSAUG00010014712	GDPD5 (ENSSAUG00010014706)	serpinh1a (ENSSAUG00010014702)	acer3 (ENSSAUG00010014699)	ENSSAUG00010014696	mmp13a (ENSSAUG00010014101)	mmp30 (ENSSAUG00010014084)	acat1 (ENSSAUG00010014060)	tmprss2 (ENSSAUG00010014030)
Perciformes	ANCESTRAL SPECIES	25	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000006659	ENSGT00390000009588	ENSGT00390000015123	ENSGT00390000002960.d	ENSGT00940000159985	ENSGT00390000000083.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00940000154313.c.a	ENSGT01100000263504.a.a.eb	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000006659	ENSGT00390000009588	ENSGT01030000235478	ENSGT00390000002960.d	ENSGT00940000159985	ENSGT00390000000083.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b
Lumpfish	MODERN SPECIES	5	ENSCLMG00005003854	crx (ENSCLMG00005003857)	kptn (ENSCLMG00005003862)	nova1 (ENSCLMG00005003905)	capns1b (ENSCLMG00005003909)	zgc:153990 (ENSCLMG00005003910)	dlb (ENSCLMG00005003913)	ppp1r14aa (ENSCLMG00005003935)	ENSCLMG00005003937	MX1 (ENSCLMG00005003939)	MARK4 (ENSCLMG00005003941)	ckma (ENSCLMG00005003944)	nccrp1 (ENSCLMG00005003964)	slc8a2a (ENSCLMG00005003969)	hnrnpl (ENSCLMG00005004128)	irf2bp1 (ENSCLMG00005004511) #22	micu2 (ENSCLMG00005004524)	ENSCLMG00005004552	tiprl (ENSCLMG00005004618)	ska2 (ENSCLMG00005004637)	ENSCLMG00005004653	ENSCLMG00005004661	ENSCLMG00005004684	ENSCLMG00005004755	ENSCLMG00005004784	AMOT (ENSCLMG00005004840)	smfn (ENSCLMG00005004846)	CBLB (ENSCLMG00005004854)	alcama (ENSCLMG00005004911)	ZPLD1 (ENSCLMG00005005151)	picalma (ENSCLMG00005005157)
Stickleback	MODERN SPECIES	7	ENSGACG00000020179	crx (ENSGACG00000020178)	ENSGACG00000020177	kptn (ENSGACG00000020176)	nova1 (ENSGACG00000020175)	capns1a (ENSGACG00000020174)	zgc:153990 (ENSGACG00000020173)	dlb (ENSGACG00000020172)	ppp1r14aa (ENSGACG00000020171)	ENSGACG00000020170	MARK4 (ENSGACG00000020169)	ckma (ENSGACG00000020168)	nccrp1 (ENSGACG00000020167)	slc8a2a (ENSGACG00000020166)	hnrnpl (ENSGACG00000020165)	irf2bp1 (ENSGACG00000020164) #22	micu2 (ENSGACG00000020163)	ENSGACG00000020162	tiprl (ENSGACG00000020161)	ska2 (ENSGACG00000020160)	HLCS (ENSGACG00000020159)	ENSGACG00000020158	WSCD1 (ENSGACG00000020156)	usp25 (ENSGACG00000020155)	NRIP1 (ENSGACG00000020154)	GDPD5 (ENSGACG00000020153)	serpinh1a (ENSGACG00000020152)	acer3 (ENSGACG00000020151)	ENSGACG00000020145	ENSGACG00000020141	cfap58 (ENSGACG00000020139)
Perciformes_a	ANCESTRAL SPECIES	26	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000006659	ENSGT00390000009588	ENSGT01030000235478	ENSGT00390000002960.d	ENSGT00940000159985	ENSGT00390000000083.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b
Channel bull blenny	MODERN SPECIES	5	ARHGAP32 (ENSCGOG00000023196)	h3f3c (ENSCGOG00000023506)	crx (ENSCGOG00000023527)	kptn (ENSCGOG00000023528)	nova1 (ENSCGOG00000023557)	capns1b (ENSCGOG00000023564)	zgc:153990 (ENSCGOG00000023587)	dlb (ENSCGOG00000023588)	ppp1r14aa (ENSCGOG00000023589)	ENSCGOG00000023592	MARK4 (ENSCGOG00000023623)	ckma (ENSCGOG00000023727)	nccrp1 (ENSCGOG00000023753)	slc8a2a (ENSCGOG00000023761)	hnrnpl (ENSCGOG00000023768)	irf2bp1 (ENSCGOG00000023781) #22	micu2 (ENSCGOG00000023783)	ENSCGOG00000023790	tiprl (ENSCGOG00000023800)	ska2 (ENSCGOG00000023803)	ENSCGOG00000023805	HLCS (ENSCGOG00000023812)	ENSCGOG00000023815	riox2 (ENSCGOG00000023818)	bhlha9 (ENSCGOG00000023823)	WSCD1 (ENSCGOG00000023825)	usp25 (ENSCGOG00000023861)	ENSCGOG00000024000	samsn1b (ENSCGOG00000024001)	GDPD5 (ENSCGOG00000024002)	serpinh1a (ENSCGOG00000024028)
Pike perch	MODERN SPECIES	25	ENSSLUG00000010540	crx (ENSSLUG00000010543)	kptn (ENSSLUG00000010558)	nova1 (ENSSLUG00000010622)	capns1b (ENSSLUG00000010645)	zgc:153990 (ENSSLUG00000010699)	dlb (ENSSLUG00000010711)	ppp1r14aa (ENSSLUG00000010783)	ENSSLUG00000010790	MARK4 (ENSSLUG00000010828)	ckma (ENSSLUG00000011167)	ENSSLUG00000011192	nccrp1 (ENSSLUG00000011197)	slc8a2a (ENSSLUG00000011208)	hnrnpl (ENSSLUG00000011278)	irf2bp1 (ENSSLUG00000011361) #22	micu2 (ENSSLUG00000011366)	ENSSLUG00000011373	tiprl (ENSSLUG00000011384)	ska2 (ENSSLUG00000011389)	ENSSLUG00000011394	HLCS (ENSSLUG00000011406)	ENSSLUG00000011414	riox2 (ENSSLUG00000011429)	bhlha9 (ENSSLUG00000011439)	WSCD1 (ENSSLUG00000011446)	usp25 (ENSSLUG00000011536)	NRIP1 (ENSSLUG00000012909)	samsn1b (ENSSLUG00000012915)	GDPD5 (ENSSLUG00000012949)	serpinh1a (ENSSLUG00000012978)
Ballan wrasse	MODERN SPECIES	39															hnrnpl (ENSLBEG00000010859)	irf2bp1 (ENSLBEG00000010908) #22	micu2 (ENSLBEG00000010921)	ENSLBEG00000010951	bhlha9 (ENSLBEG00000010970)	WSCD1 (ENSLBEG00000010992)	usp25 (ENSLBEG00000011088)	ENSLBEG00000011254	ENSLBEG00000011271	samsn1b (ENSLBEG00000011282)	GDPD5 (ENSLBEG00000011324)	serpinh1a (ENSLBEG00000011371)	serpinh1a (ENSLBEG00000011389)	acer3 (ENSLBEG00000011413)	ENSLBEG00000011660	mmp13a (ENSLBEG00000012136)	ENSLBEG00000012194
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Carangaria	ANCESTRAL SPECIES	16	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00950000183064.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Seriola	ANCESTRAL SPECIES	2	ENSGT00950000183064.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Yellowtail amberjack	MODERN SPECIES	2969	ARHGAP32 (ENSSLDG00000006831)	ENSSLDG00000006786	crx (ENSSLDG00000006771)	kptn (ENSSLDG00000006751)	nova1 (ENSSLDG00000006713)	capns1b (ENSSLDG00000006668)	zgc:153990 (ENSSLDG00000006655)	dlb (ENSSLDG00000006620)	ppp1r14aa (ENSSLDG00000006603)	ENSSLDG00000006576	MARK4 (ENSSLDG00000006466)	ckma (ENSSLDG00000006400)	nccrp1 (ENSSLDG00000006363)	slc8a2a (ENSSLDG00000006321)	hnrnpl (ENSSLDG00000006243)	irf2bp1 (ENSSLDG00000006215) #22	micu2 (ENSSLDG00000006198)	ENSSLDG00000006178	bhlha9 (ENSSLDG00000006158)	WSCD1 (ENSSLDG00000006142)	usp25 (ENSSLDG00000006019)	ENSSLDG00000005984	samsn1b (ENSSLDG00000005945)	GDPD5 (ENSSLDG00000005887)	serpinh1a (ENSSLDG00000005778)	acer3 (ENSSLDG00000005752)	ENSSLDG00000005729	mmp13a (ENSSLDG00000005699)	ENSSLDG00000005673	mmp30 (ENSSLDG00000005652)	acat1 (ENSSLDG00000005613)
Greater amberjack	MODERN SPECIES	39	ENSSDUG00000020749	crx (ENSSDUG00000020738)	kptn (ENSSDUG00000020717)	nova1 (ENSSDUG00000020704)	capns1b (ENSSDUG00000020449)	zgc:153990 (ENSSDUG00000020418)	dlb (ENSSDUG00000020393)	ppp1r14aa (ENSSDUG00000020380)	ENSSDUG00000020373	MARK4 (ENSSDUG00000020304)	ckma (ENSSDUG00000020286)	nccrp1 (ENSSDUG00000020262)	ENSSDUG00000020256	slc8a2a (ENSSDUG00000020230)	hnrnpl (ENSSDUG00000020195)	irf2bp1 (ENSSDUG00000020191) #22	micu2 (ENSSDUG00000020164)	ENSSDUG00000020134	bhlha9 (ENSSDUG00000020126)	WSCD1 (ENSSDUG00000020105)	usp25 (ENSSDUG00000020007)	ENSSDUG00000019994	samsn1b (ENSSDUG00000019956)	GDPD5 (ENSSDUG00000019937)	serpinh1a (ENSSDUG00000019915)	acer3 (ENSSDUG00000019880)	ENSSDUG00000019870	ENSSDUG00000019852	ENSSDUG00000019834	mmp30 (ENSSDUG00000019662)	acat1 (ENSSDUG00000019613)
Barramundi perch	MODERN SPECIES	94	ARHGAP32 (ENSLCAG00010013780)	crx (ENSLCAG00010013942)	kptn (ENSLCAG00010013946)	nova1 (ENSLCAG00010013957)	capns1b (ENSLCAG00010013962)	zgc:153990 (ENSLCAG00010013964)	dlb (ENSLCAG00010013965)	ppp1r14aa (ENSLCAG00010013967)	ENSLCAG00010013970	MARK4 (ENSLCAG00010013981)	ENSLCAG00010014025	ckma (ENSLCAG00010014042)	nccrp1 (ENSLCAG00010014107)	slc8a2a (ENSLCAG00010014117)	hnrnpl (ENSLCAG00010014138)	irf2bp1 (ENSLCAG00010014175) #22	micu2 (ENSLCAG00010014180)	ENSLCAG00010014193	bhlha9 (ENSLCAG00010014204)	WSCD1 (ENSLCAG00010014206)	usp25 (ENSLCAG00010014316)	ENSLCAG00010014946	samsn1b (ENSLCAG00010014951)	GDPD5 (ENSLCAG00010014965)	serpinh1a (ENSLCAG00010014979)	acer3 (ENSLCAG00010014987)	ENSLCAG00010014996	ENSLCAG00010015015	MMP1 (ENSLCAG00010015037)	mmp30 (ENSLCAG00010015069)	acat1 (ENSLCAG00010015075)
Pleuronectoidei	ANCESTRAL SPECIES	27	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT00950000182772.A.a.a.b.r.a	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.b	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a
Turbot	MODERN SPECIES	16	alcama (ENSSMAG00000003376)	CBLB (ENSSMAG00000003290)	ENSSMAG00000003275	ENSSMAG00000003217	ENSSMAG00000003204	ENSSMAG00000036053	ENSSMAG00000003161	ENSSMAG00000003115	ENSSMAG00000003099	ENSSMAG00000003076	ENSSMAG00000003046	ENSSMAG00000003028	nccrp1 (ENSSMAG00000003018)	ENSSMAG00000002966	hnrnpl (ENSSMAG00000002794)	ENSSMAG00000002776 #22	ENSSMAG00000002732	ENSSMAG00000002709	bhlha9 (ENSSMAG00000002689)	ENSSMAG00000002684	usp25 (ENSSMAG00000002366)	ENSSMAG00000002339	samsn1b (ENSSMAG00000002314)	ENSSMAG00000002264	serpinh1a (ENSSMAG00000002230)	acer3 (ENSSMAG00000027620)	mmp13a (ENSSMAG00000002191)	mmp30 (ENSSMAG00000025841)	mmp30 (ENSSMAG00000002125)	acat1 (ENSSMAG00000002085)	tmprss2 (ENSSMAG00000002066)
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.a	ENSGT00940000167100.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a	ENSGT00940000154678.a.b
Zig-zag eel	MODERN SPECIES	5	ENSMAMG00000012684	ENSMAMG00000021282	ENSMAMG00000021274	nova1 (ENSMAMG00000021272)	capns1a (ENSMAMG00000026815)	zgc:153990 (ENSMAMG00000021269)	dlb (ENSMAMG00000021264)	ppp1r14aa (ENSMAMG00000021263)	ENSMAMG00000021259	ENSMAMG00000021253	ENSMAMG00000021246	ckma (ENSMAMG00000028699)	nccrp1 (ENSMAMG00000021240)	slc8a2a (ENSMAMG00000021235)	hnrnpl (ENSMAMG00000021232)	ENSMAMG00000021231 #22	ENSMAMG00000021224	ENSMAMG00000021219	ENSMAMG00000021216	ENSMAMG00000021211	ENSMAMG00000021209	ENSMAMG00000021204	ENSMAMG00000027997	ENSMAMG00000021199	ENSMAMG00000021196	ENSMAMG00000026214	ENSMAMG00000021181	ENSMAMG00000026552
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000155573.g.b	ENSGT00940000155478.hb.b	ENSGT00450000040324.a.a.a	ENSGT00940000164418.a.b	ENSGT00950000182985.a.b.a	ENSGT01030000234613.b.b.h	ENSGT00940000159555.v.b	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.a	ENSGT01100000264924	ENSGT00940000161313	ENSGT00940000158344.a.b	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a #22	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962	ENSGT00390000007999	ENSGT00940000157806.f	ENSGT00940000159690.b	ENSGT00940000156163.i.b	ENSGT00730000110920.a	ENSGT00940000154907.a.a	ENSGT01030000234626.E	ENSGT00940000155207.a.b.i.a	ENSGT00940000154678.a.b	ENSGT00960000186681
Climbing perch	MODERN SPECIES	5	ENSATEG00000017457	ENSATEG00000017467	ENSATEG00000017505	nova1 (ENSATEG00000025682)	capns1a (ENSATEG00000017593)	zgc:153990 (ENSATEG00000017609)	dlb (ENSATEG00000017617)	ppp1r14aa (ENSATEG00000025902)	ENSATEG00000017678	ENSATEG00000017713	ckma (ENSATEG00000017761)	ENSATEG00000017784	nccrp1 (ENSATEG00000017793)	slc8a2a (ENSATEG00000000055)	hnrnpl (ENSATEG00000000129)	ENSATEG00000029648 #22	ENSATEG00000000150	ENSATEG00000000200	bhlha9 (ENSATEG00000026340)	ENSATEG00000000444	usp25 (ENSATEG00000000570)	ENSATEG00000000676	samsn1b (ENSATEG00000000688)	ENSATEG00000000697	serpinh1a (ENSATEG00000000702)	acer3 (ENSATEG00000000727)	ENSATEG00000002315	ENSATEG00000001700	ENSATEG00000025293	ENSATEG00000027265	ENSATEG00000001227
Siamese fighting fish	MODERN SPECIES	5	ENSBSLG00000019725	crx (ENSBSLG00000019718)	kptn (ENSBSLG00000019606)	nova1 (ENSBSLG00000019582)	capns1b (ENSBSLG00000019569)	zgc:153990 (ENSBSLG00000019557)	dlb (ENSBSLG00000019539)	ppp1r14aa (ENSBSLG00000019532)	EXOC3L2 (ENSBSLG00000019503)	MARK4 (ENSBSLG00000018869)	ENSBSLG00000018729	ckma (ENSBSLG00000018709)	nccrp1 (ENSBSLG00000018701)	slc8a2a (ENSBSLG00000018694)	hnrnpl (ENSBSLG00000018681)	irf2bp1 (ENSBSLG00000018678) #22	micu2 (ENSBSLG00000018675)	ENSBSLG00000018637	bhlha9 (ENSBSLG00000018632)	ENSBSLG00000018630	usp25 (ENSBSLG00000016375)	NRIP1 (ENSBSLG00000016341)	samsn1b (ENSBSLG00000016338)	GDPD5 (ENSBSLG00000016320)	serpinh1a (ENSBSLG00000016314)	acer3 (ENSBSLG00000016310)	ENSBSLG00000016308	ENSBSLG00000016306	ENSBSLG00000016273	MMP1 (ENSBSLG00000016267)	acat1 (ENSBSLG00000016128)
Tiger tail seahorse	MODERN SPECIES	497	ARHGAP32 (ENSHCOG00000008304)	ENSHCOG00000008323	crx (ENSHCOG00000008330)	kptn (ENSHCOG00000008352)	nova1 (ENSHCOG00000008366)	capns1b (ENSHCOG00000008383)	zgc:153990 (ENSHCOG00000008391)	dlb (ENSHCOG00000008406)	ppp1r14aa (ENSHCOG00000008414)	ENSHCOG00000008420	MARK4 (ENSHCOG00000008450)	ckma (ENSHCOG00000008473)	nccrp1 (ENSHCOG00000008491)	slc8a2a (ENSHCOG00000008560)	hnrnpl (ENSHCOG00000008575)	irf2bp1 (ENSHCOG00000008582) #22	micu2 (ENSHCOG00000008610)	ENSHCOG00000008634	WSCD1 (ENSHCOG00000008680)	usp25 (ENSHCOG00000008781)	ENSHCOG00000008798	samsn1b (ENSHCOG00000008824)	ENSHCOG00000008839
Pinecone sodierfish	MODERN SPECIES	5	zgc:100829 (ENSMMDG00005014974)	ENSMMDG00005014976	CXXC5 (ENSMMDG00005014978)	ppp3ca (ENSMMDG00005014985)	dnajc18 (ENSMMDG00005015234)	ENSMMDG00005015240	ENSMMDG00005015246	gng8 (ENSMMDG00005015248)	tmem45b (ENSMMDG00005015253)	nfrkb (ENSMMDG00005015261)	RYR1 (ENSMMDG00005015292)	sms (ENSMMDG00005015336)	ENSMMDG00005015341	gabrr3a (ENSMMDG00005005457)	hnrnpl (ENSMMDG00005005465)	irf2bp1 (ENSMMDG00005005912) #22	micu2 (ENSMMDG00005005915)	ENSMMDG00005005925	bhlha9 (ENSMMDG00005005931)	WSCD1 (ENSMMDG00005005936)	usp25 (ENSMMDG00005005985)	ENSMMDG00005007180	NRIP1 (ENSMMDG00005007181)	samsn1b (ENSMMDG00005007183)	GDPD5 (ENSMMDG00005007190)	serpinh1a (ENSMMDG00005007219)	ENSMMDG00005007220	ENSMMDG00005007232	mmp13a (ENSMMDG00005007389)	mmp30 (ENSMMDG00005007533)	acat1 (ENSMMDG00005007855)
Cod	MODERN SPECIES	20	ENSGMOG00000011282	ENSGMOG00000032800	ENSGMOG00000011273	ENSGMOG00000011261	nova1 (ENSGMOG00000011253)	capns1a (ENSGMOG00000011247)	zgc:153990 (ENSGMOG00000011238)	dlb (ENSGMOG00000011226)	ppp1r14aa (ENSGMOG00000011234)	ENSGMOG00000008814	ENSGMOG00000008788	ckma (ENSGMOG00000008778)	nccrp1 (ENSGMOG00000008715)	slc8a2a (ENSGMOG00000008693)	hnrnpl (ENSGMOG00000008678)	ENSGMOG00000019843 #22	ENSGMOG00000008664	ENSGMOG00000008639	bhlha9 (ENSGMOG00000008634)	ENSGMOG00000008623	usp25 (ENSGMOG00000008601)	samsn1b (ENSGMOG00000008566)	ENSGMOG00000008552	serpinh1a (ENSGMOG00000007382)	acer3 (ENSGMOG00000007373)	ENSGMOG00000032175	ENSGMOG00000034055	ENSGMOG00000029921	ENSGMOG00000025911	acat1 (ENSGMOG00000014560)	ENSGMOG00000027598
Euteleosteomorpha	ANCESTRAL SPECIES	55	ENSGT00450000040324.a.a.b	ENSGT00950000182843.a.a.a.b.a.b	ENSGT00940000155478.ib	ENSGT00940000156844.a	ENSGT00670000099420	ENSGT00940000154656.pb	ENSGT01000000214804	ENSGT00940000159557	ENSGT00940000162064	ENSGT00940000155736.D	ENSGT00940000157969	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT01030000235127	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000153881.b	ENSGT00940000167036	ENSGT00940000158234	ENSGT00980000199080	ENSGT00940000164056	ENSGT00390000009423.b
Acanthomorphata	ANCESTRAL SPECIES	119											ENSGT00390000010744.m	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT01100000266284	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053	ENSGT00940000160011
Euacanthomorphacea	ANCESTRAL SPECIES	33											ENSGT00390000010744.m	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000161512	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000163513	ENSGT00940000162179.e.a.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869
Percomorphaceae	ANCESTRAL SPECIES	44											ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000163513	ENSGT00940000162179.e.a.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869
Tiger tail seahorse	MODERN SPECIES	517	tada2a (ENSHCOG00000018758)	dusp14 (ENSHCOG00000018781)	SYNRG (ENSHCOG00000018811)	hnf1ba (ENSHCOG00000018878)	ENSHCOG00000018898	dynll2a (ENSHCOG00000018908)	srsf1a (ENSHCOG00000018918)	aldoca (ENSHCOG00000018942)	ccdc9 (ENSHCOG00000018956)	ENSHCOG00000018997	ENSHCOG00000019015	eml2 (ENSHCOG00000019047) #34	ENSHCOG00000019094	ENSHCOG00000019136	ENSHCOG00000019142	irf2bp1 (ENSHCOG00000019150) #22	foxa3 (ENSHCOG00000019157)	PLD3 (ENSHCOG00000000506)	ENSHCOG00000019201	ENSHCOG00000019213	kcnk6 (ENSHCOG00000019218)	PANX1 (ENSHCOG00000019223)	fgf12b (ENSHCOG00000019239)	ENSHCOG00000019268	PARL (ENSHCOG00000019280)	cldn15lb (ENSHCOG00000019290)	ENSHCOG00000019312	ENSHCOG00000000511	ENSHCOG00000019342	clns1a (ENSHCOG00000019360)	pak1 (ENSHCOG00000019459)
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT00940000164025.a.b.a	ENSGT00940000165704.a.a	ENSGT00940000165067	ENSGT00940000164025.b.a	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000163513	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162179.e.a.a	ENSGT00940000164427.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00940000165704.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162179.e.a.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00940000165704.a.b	ENSGT00940000164025.a.a.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067.g.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162179.e.a.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00940000164025.a.b.a	ENSGT00940000165704.b	ENSGT00940000164025.a.a.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067.g.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000161095	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053	ENSGT00940000160011	ENSGT00550000075007	ENSGT00990000203908
Zig-zag eel	MODERN SPECIES	4	ENSMAMG00000025595	ENSMAMG00000027763	ENSMAMG00000024535	ENSMAMG00000028390	ENSMAMG00000024288	ENSMAMG00000016082	ENSMAMG00000025441	tyw1 (ENSMAMG00000016089)	ENSMAMG00000016140	GALNT17 (ENSMAMG00000016161)	ENSMAMG00000016193	ENSMAMG00000016222 #34	ENSMAMG00000016268 #35	ENSMAMG00000016281	ENSMAMG00000016319	irf2bp1 (ENSMAMG00000016322) #22	foxa3 (ENSMAMG00000016328)	ENSMAMG00000016343	ENSMAMG00000016366	kcnk6 (ENSMAMG00000016396)	ENSMAMG00000016404	blvrb (ENSMAMG00000016407)	ENSMAMG00000016420	ENSMAMG00000025363	ENSMAMG00000026704	ENSMAMG00000016567	ENSMAMG00000016584	CKM (ENSMAMG00000016645)	klc3 (ENSMAMG00000016669)	ercc2 (ENSMAMG00000016724)	zgc:154093 (ENSMAMG00000026176)
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00940000164025.a.b.a	ENSGT00940000165704.b	ENSGT00940000164025.b.a	ENSGT00940000165067.g.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000161740 #19	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000161095	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053	ENSGT00940000160011	ENSGT00550000075007	ENSGT00990000203908
Climbing perch	MODERN SPECIES	4	ENSATEG00000006958	ENSATEG00000027065	ENSATEG00000027784	ENSATEG00000025356	ENSATEG00000006889	ENSATEG00000027366	tyw1 (ENSATEG00000006856)	ENSATEG00000006804	GALNT17 (ENSATEG00000006748)	ENSATEG00000027671	ENSATEG00000006703	ENSATEG00000006581 #34	ENSATEG00000006537	ENSATEG00000006500	ENSATEG00000006485	irf2bp1 (ENSATEG00000006477) #22	foxa3 (ENSATEG00000006467)	PLD3 (ENSATEG00000006458)	kcnk6 (ENSATEG00000006295)	ENSATEG00000006290	blvrb (ENSATEG00000006287)	SPTBN4 (ENSATEG00000006069)	ENSATEG00000027802	ENSATEG00000005421	CKM (ENSATEG00000005383)	klc3 (ENSATEG00000005340)	ercc2 (ENSATEG00000005268)	zgc:154093 (ENSATEG00000005248)	ENSATEG00000026714	ENSATEG00000029528	sae1 (ENSATEG00000005142)
Siamese fighting fish	MODERN SPECIES	4	ENSBSLG00000026692	ENSBSLG00000026693	ENSBSLG00000026694	ENSBSLG00000026696	ENSBSLG00000026697	ENSBSLG00000026698	sbds (ENSBSLG00000026699)	tyw1 (ENSBSLG00000026700)	CALN1 (ENSBSLG00000026701)	GALNT17 (ENSBSLG00000026702)	rhbdd1 (ENSBSLG00000026703)	eml2 (ENSBSLG00000026704) #34	GPR4 (ENSBSLG00000026705) #35	ENSBSLG00000026708 #19	ENSBSLG00000026709	irf2bp1 (ENSBSLG00000026710) #22	foxa3 (ENSBSLG00000026711)	PLD3 (ENSBSLG00000026713)	kcnk6 (ENSBSLG00000026718)	ENSBSLG00000026719	blvrb (ENSBSLG00000026720)	ENSBSLG00000026721	ENSBSLG00000026722	ENSBSLG00000026723	ENSBSLG00000026724	MARK4 (ENSBSLG00000026725)	CKM (ENSBSLG00000026726)	klc3 (ENSBSLG00000026727)	ercc2 (ENSBSLG00000026728)	zgc:154093 (ENSBSLG00000002255)	ZC3H4 (ENSBSLG00000002283)
Carangaria	ANCESTRAL SPECIES	8	ENSGT00940000165704.a.b	ENSGT00940000164025.a.a.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067.g.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162179.e.a.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a
Pleuronectoidei	ANCESTRAL SPECIES	35	ENSGT00940000165704.a.b	ENSGT00940000164025.a.a.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067.g.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000162179.e.a.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306
Tongue sole	MODERN SPECIES	14	ENSCSEG00000005687	ENSCSEG00000005788	sbds (ENSCSEG00000005798)	ENSCSEG00000005805	tyw1 (ENSCSEG00000005810)	CALN1 (ENSCSEG00000005832)	GALNT17 (ENSCSEG00000005839)	rhbdd1 (ENSCSEG00000005846)	ENSCSEG00000005861	eml2 (ENSCSEG00000005866) #34	ENSCSEG00000005880	NOVA1 (ENSCSEG00000005887)	GAL3ST3 (ENSCSEG00000005903)	ENSCSEG00000005910	polr1g (ENSCSEG00000005914)	irf2bp1 (ENSCSEG00000005917) #22	foxa3 (ENSCSEG00000005919)	PLD3 (ENSCSEG00000005923)	ENSCSEG00000005933	ENSCSEG00000005936	kcnk6 (ENSCSEG00000005940)	ENSCSEG00000005944	blvrb (ENSCSEG00000005949)	SPTBN4 (ENSCSEG00000005954)	ENSCSEG00000005974	ENSCSEG00000005983	ENSCSEG00000005994	MARK4 (ENSCSEG00000005996)	CKM (ENSCSEG00000006027)	klc3 (ENSCSEG00000006036)	ercc2 (ENSCSEG00000006041)
Turbot	MODERN SPECIES	15	ENSSMAG00000020362	ENSSMAG00000020359	ENSSMAG00000020356	ENSSMAG00000020354	ryr1b (ENSSMAG00000020308)	rasgrp4 (ENSSMAG00000020287)	ENSSMAG00000020270	opa3 (ENSSMAG00000034179) #36	ppp1r13l (ENSSMAG00000020248)	ENSSMAG00000020246	exosc5 (ENSSMAG00000020240)	ENSSMAG00000020214 #34	ENSSMAG00000020203 #35	ENSSMAG00000020189	ENSSMAG00000027207	irf2bp1 (ENSSMAG00000020176) #22	foxa3 (ENSSMAG00000022453)	ENSSMAG00000020165	ENSSMAG00000029001	ENSSMAG00000034755	kcnk6 (ENSSMAG00000020148)	ENSSMAG00000020147	blvrb (ENSSMAG00000030546)	ENSSMAG00000019985	ENSSMAG00000033788	ENSSMAG00000027612	ENSSMAG00000019949	ENSSMAG00000019945	ENSSMAG00000019840	ENSSMAG00000024362	CKM (ENSSMAG00000019804)
Carangaria_A	ANCESTRAL SPECIES	10	ENSGT00940000165704.a.b	ENSGT00940000164025.a.a.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067.g.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869
Seriola	ANCESTRAL SPECIES	38	ENSGT00940000165067.h	ENSGT00940000165704.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067.g.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869	ENSGT00940000167306
Yellowtail amberjack	MODERN SPECIES	2952	cldnf (ENSSLDG00000003805)	ENSSLDG00000003759	cldne (ENSSLDG00000003733)	cldnj (ENSSLDG00000003716)	ENSSLDG00000003691	sbds (ENSSLDG00000003659)	tyw1 (ENSSLDG00000003554)	CALN1 (ENSSLDG00000003515)	GALNT17 (ENSSLDG00000003476)	rhbdd1 (ENSSLDG00000003427)	ENSSLDG00000003400	eml2 (ENSSLDG00000003298) #34	GPR4 (ENSSLDG00000003214) #35	ENSSLDG00000003193	polr1g (ENSSLDG00000003180)	irf2bp1 (ENSSLDG00000003172) #22	foxa3 (ENSSLDG00000003162)	PLD3 (ENSSLDG00000003145)	ENSSLDG00000003104	kcnk6 (ENSSLDG00000003090)	ENSSLDG00000003083	blvrb (ENSSLDG00000003037)	SPTBN4 (ENSSLDG00000002814)	ENSSLDG00000002790	ENSSLDG00000002776	ENSSLDG00000002739	ENSSLDG00000002709	MARK4 (ENSSLDG00000002620)	ENSSLDG00000002609	ENSSLDG00000002552
Greater amberjack	MODERN SPECIES	14	ENSSDUG00000001332	ENSSDUG00000001482	ENSSDUG00000001493	ENSSDUG00000001505	ENSSDUG00000001518	sbds (ENSSDUG00000001528)	tyw1 (ENSSDUG00000001552)	CALN1 (ENSSDUG00000001602)	GALNT17 (ENSSDUG00000001631)	rhbdd1 (ENSSDUG00000001663)	eml2 (ENSSDUG00000001693) #34	GPR4 (ENSSDUG00000001773) #35	ENSSDUG00000001795	ENSSDUG00000001854	polr1g (ENSSDUG00000001874)	ENSSDUG00000001888 #22	foxa3 (ENSSDUG00000001899)	PLD3 (ENSSDUG00000001932)	ENSSDUG00000001979	ENSSDUG00000002001	kcnk6 (ENSSDUG00000002020)	ENSSDUG00000002034	blvrb (ENSSDUG00000002045)	SPTBN4 (ENSSDUG00000002069)	ENSSDUG00000002167	ENSSDUG00000002174	ENSSDUG00000002195	ENSSDUG00000002229	MARK4 (ENSSDUG00000002245)	CKM (ENSSDUG00000002308)	ENSSDUG00000002337
Barramundi perch	MODERN SPECIES	109	ENSLCAG00010007876	cldnf (ENSLCAG00010007881)	ENSLCAG00010007883	ENSLCAG00010007885	cldnj (ENSLCAG00010007886)	ENSLCAG00010007887	sbds (ENSLCAG00010007897)	tyw1 (ENSLCAG00010007973)	CALN1 (ENSLCAG00010008088)	GALNT17 (ENSLCAG00010008110)	rhbdd1 (ENSLCAG00010008165)	eml2 (ENSLCAG00010008222) #34	ENSLCAG00010008344	ENSLCAG00010008353	polr1g (ENSLCAG00010008363)	irf2bp1 (ENSLCAG00010008366) #22	foxa3 (ENSLCAG00010008370)	PLD3 (ENSLCAG00010008373)	ENSLCAG00010008380	ENSLCAG00010008387	kcnk6 (ENSLCAG00010008395)	ENSLCAG00010008398	blvrb (ENSLCAG00010008406)	ENSLCAG00010008513	ENSLCAG00010008937	ENSLCAG00010008941	ENSLCAG00010008953	MARK4 (ENSLCAG00010009000)	CKM (ENSLCAG00010009057)	ENSLCAG00010009199	klc3 (ENSLCAG00010009229)
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00940000165704.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000164025.a.a.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000163513	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869	ENSGT00940000167306
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00940000165704.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000164025.a.a.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000163513	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869	ENSGT00940000167306
Ballan wrasse	MODERN SPECIES	200															polr1g (ENSLBEG00000008226)	irf2bp1 (ENSLBEG00000008233) #22	foxa3 (ENSLBEG00000008249)	PLD3 (ENSLBEG00000008280)	ENSLBEG00000008324	ENSLBEG00000008335	ENSLBEG00000008374	kcnk6 (ENSLBEG00000008414)	ENSLBEG00000008424	blvrb (ENSLBEG00000008444)	SPTBN4 (ENSLBEG00000008512)	ENSLBEG00000008658	ENSLBEG00000008689	ENSLBEG00000008763	CAPN5 (ENSLBEG00000008778)	ompa (ENSLBEG00000008803)	dcun1d5 (ENSLBEG00000008824)
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00940000164025.a.a.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00950000183136.a.a	ENSGT00390000002237	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000163513	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869	ENSGT00940000167306
Perciformes	ANCESTRAL SPECIES	10	ENSGT00940000165704.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00950000183136.a.a	ENSGT00390000002237	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000162953	ENSGT00940000161095	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869	ENSGT00940000167306
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00940000163648.a.a.a.b	ENSGT00940000162095	ENSGT00940000154762.a.a	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000179739	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053
Pike perch	MODERN SPECIES	112	ENSSLUG00000023771	ENSSLUG00000023768	ENSSLUG00000023765	ENSSLUG00000023761	cldnj (ENSSLUG00000023757)	ENSSLUG00000023752	sbds (ENSSLUG00000023742)	tyw1 (ENSSLUG00000023662)	CALN1 (ENSSLUG00000023641)	GALNT17 (ENSSLUG00000023630)	rhbdd1 (ENSSLUG00000023620)	eml2 (ENSSLUG00000023413) #34	ENSSLUG00000023355	ENSSLUG00000023353	polr1g (ENSSLUG00000023349)	irf2bp1 (ENSSLUG00000023346) #22	foxa3 (ENSSLUG00000023343)	PLD3 (ENSSLUG00000023277)
Channel bull blenny	MODERN SPECIES	4	ENSCGOG00000016866	ENSCGOG00000016873	cldnj (ENSCGOG00000016882)	sbds (ENSCGOG00000016885)	ENSCGOG00000016910	tyw1 (ENSCGOG00000016921)	ENSCGOG00000017197	CALN1 (ENSCGOG00000017198)	ENSCGOG00000017201	GALNT17 (ENSCGOG00000017206)	rhbdd1 (ENSCGOG00000017364)	eml2 (ENSCGOG00000017431) #34	GPR4 (ENSCGOG00000020562) #35	ENSCGOG00000020563	polr1g (ENSCGOG00000020573)	irf2bp1 (ENSCGOG00000020575) #22	foxa3 (ENSCGOG00000020577)	PLD3 (ENSCGOG00000020586)	ENSCGOG00000020729	kcnk6 (ENSCGOG00000020751)	ENSCGOG00000020753	blvrb (ENSCGOG00000020754)	SPTBN4 (ENSCGOG00000020762)	ENSCGOG00000020779	ENSCGOG00000020783	ENSCGOG00000020785	ENSCGOG00000020791	ENSCGOG00000020795	ENSCGOG00000020799	MARK4 (ENSCGOG00000020827)	CKM (ENSCGOG00000020913)
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00940000163648.a.a.a.b	ENSGT00940000162095	ENSGT00940000154762.a.a	ENSGT00940000154762.a.b.a.a.a.a	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00940000162953	ENSGT00940000161095	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000157623
Lumpfish	MODERN SPECIES	4	ENSCLMG00005011849	cldnf (ENSCLMG00005011850)	CLDN4 (ENSCLMG00005011851)	ENSCLMG00005011852	cldnj (ENSCLMG00005011853)	ENSCLMG00005011854	sbds (ENSCLMG00005011855)	tyw1 (ENSCLMG00005011857)	CALN1 (ENSCLMG00005011901)	GALNT17 (ENSCLMG00005011903)	rhbdd1 (ENSCLMG00005011904)	eml2 (ENSCLMG00005011919) #34	ENSCLMG00005014024	ENSCLMG00005014026	polr1g (ENSCLMG00005014029)	irf2bp1 (ENSCLMG00005014031) #22	foxa3 (ENSCLMG00005014034)	PLD3 (ENSCLMG00005014037)	ENSCLMG00005014045	kcnk6 (ENSCLMG00005014046)	ENSCLMG00005014047	blvrb (ENSCLMG00005014048)	sphkap (ENSCLMG00005014051)	daw1 (ENSCLMG00005014054)	slc19a3b (ENSCLMG00005014073)	SLC19A3 (ENSCLMG00005014076)	agfg1a (ENSCLMG00005014087)	mrpl44 (ENSCLMG00005014122)	ENSCLMG00005014123	mffa (ENSCLMG00005014124)	megf6 (ENSCLMG00005014125)
Stickleback	MODERN SPECIES		ENSGACG00000012723	ENSGACG00000012721	cldna (ENSGACG00000012720)	cldnj (ENSGACG00000012717)	ENSGACG00000012714	sbds (ENSGACG00000012697)	tyw1 (ENSGACG00000012692)	CALN1 (ENSGACG00000012689)	ENSGACG00000012687	rhbdd1 (ENSGACG00000012684)	eml2 (ENSGACG00000012646) #34	ENSGACG00000012634	ENSGACG00000012628	ENSGACG00000012627	polr1g (ENSGACG00000012623)	irf2bp1 (ENSGACG00000012622) #22	foxa3 (ENSGACG00000012621)	PLD3 (ENSGACG00000012605)	ENSGACG00000012604	ENSGACG00000012592	ENSGACG00000012590	ENSGACG00000012586	kcnk6 (ENSGACG00000012571)	ENSGACG00000012569	blvrb (ENSGACG00000012552)	SPTBN4 (ENSGACG00000012524)	ENSGACG00000012523	ENSGACG00000012517	ENSGACG00000012515	MARK4 (ENSGACG00000012485)	CKM (ENSGACG00000012427)
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00940000163648.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000164025.a.a.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000165073.a.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000163513	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b
Gilthead seabream	MODERN SPECIES	11	cldnj (ENSSAUG00010016022)	ENSSAUG00010016021	sbds (ENSSAUG00010016019)	ENSSAUG00010016018	ENSSAUG00010016017	ENSSAUG00010016016	tyw1 (ENSSAUG00010015966)	CALN1 (ENSSAUG00010015961)	GALNT17 (ENSSAUG00010015949)	rhbdd1 (ENSSAUG00010015942)	rhbdd1 (ENSSAUG00010015899)	eml2 (ENSSAUG00010010165) #34	ENSSAUG00010010118	ENSSAUG00010010111	polr1g (ENSSAUG00010010109)	irf2bp1 (ENSSAUG00010010107) #22	foxa3 (ENSSAUG00010010105)	PLD3 (ENSSAUG00010010079)	ENSSAUG00010010077	ENSSAUG00010010075	ENSSAUG00010010074	ENSSAUG00010010071	ENSSAUG00010010069	kcnk6 (ENSSAUG00010010068)	ENSSAUG00010010067	blvrb (ENSSAUG00010010065)	ENSSAUG00010005509	ENSSAUG00010005404	ENSSAUG00010005401	ENSSAUG00010005397	ENSSAUG00010005394
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00940000154762.a.a	ENSGT00940000163648.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000165073.a.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000163513	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869
European seabass	MODERN SPECIES	3	ENSDLAG00005010475	cldnf (ENSDLAG00005026658)	ENSDLAG00005035087	ENSDLAG00005026580	ENSDLAG00005010496	ENSDLAG00005033601	ENSDLAG00005029214	tyw1 (ENSDLAG00005010551)	ENSDLAG00005010741	GALNT17 (ENSDLAG00005027816)	GALNT17 (ENSDLAG00005033910)	ENSDLAG00005010844 #34	ENSDLAG00005012529 #35	ENSDLAG00005012534	ENSDLAG00005012570	irf2bp1 (ENSDLAG00005012579) #22	foxa3 (ENSDLAG00005012583)	ENSDLAG00005012595	ENSDLAG00005033731	ENSDLAG00005034851	kcnk6 (ENSDLAG00005027448)	ENSDLAG00005033501	ENSDLAG00005012820	ENSDLAG00005014309	ENSDLAG00005014317	ENSDLAG00005014335	ENSDLAG00005014354	CKM (ENSDLAG00005014209)	ENSDLAG00005014932	klc3 (ENSDLAG00005014953)	ercc2 (ENSDLAG00005015277)
Large yellow croaker	MODERN SPECIES	479	ENSLCRG00005008244	cldna (ENSLCRG00005008245)	ENSLCRG00005008248	ENSLCRG00005008250	cldnj (ENSLCRG00005008252)	ENSLCRG00005008255	sbds (ENSLCRG00005008258)	tyw1 (ENSLCRG00005008286)	CALN1 (ENSLCRG00005009241)	GALNT17 (ENSLCRG00005009243)	rhbdd1 (ENSLCRG00005009249)	eml2 (ENSLCRG00005009327) #34	ENSLCRG00005016577	ENSLCRG00005016579	polr1g (ENSLCRG00005016582)	irf2bp1 (ENSLCRG00005016583) #22	foxa3 (ENSLCRG00005016584)	PLD3 (ENSLCRG00005016585)	ENSLCRG00005016594	ENSLCRG00005016595	kcnk6 (ENSLCRG00005016597)	ENSLCRG00005016598	blvrb (ENSLCRG00005016601)	SPTBN4 (ENSLCRG00005016603)	ENSLCRG00005016643	ENSLCRG00005016646	ENSLCRG00005016647	ENSLCRG00005016649	CKM (ENSLCRG00005016657)	ENSLCRG00005016659	ENSLCRG00005016661
Tetraodontidae	ANCESTRAL SPECIES	10	ENSGT00940000154762.a.b.a.a.a.a	ENSGT00940000163648.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000165704.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053
Fugu	MODERN SPECIES	2	ENSTRUG00000016074	cldn27b (ENSTRUG00000032608)	cldn28a (ENSTRUG00000023505)	ENSTRUG00000016090	cldn6 (ENSTRUG00000029514)	ENSTRUG00000016096	sbds (ENSTRUG00000021443)	tyw1 (ENSTRUG00000016107)	CALN1 (ENSTRUG00000016130)	GALNT17 (ENSTRUG00000016145)	rhbdd1 (ENSTRUG00000016174)	eml2 (ENSTRUG00000016192) #34	ENSTRUG00000031296	ENSTRUG00000016275	ENSTRUG00000021943	irf2bp1 (ENSTRUG00000022195) #22	foxa3 (ENSTRUG00000025013)	PLD3 (ENSTRUG00000016296)	ENSTRUG00000026358	kcnk6 (ENSTRUG00000003814)	ENSTRUG00000025168	blvrb (ENSTRUG00000004082)	SPTBN4 (ENSTRUG00000004257)	ENSTRUG00000005321	MARK4 (ENSTRUG00000006414)	ckma (ENSTRUG00000006969)	ENSTRUG00000029021	klc3 (ENSTRUG00000007207)	ercc2 (ENSTRUG00000007303)	zgc:154093 (ENSTRUG00000007807)	ZC3H4 (ENSTRUG00000007843)
Tetraodon	MODERN SPECIES	8	cldna (ENSTNIG00000019005)	ENSTNIG00000019004	cldnf (ENSTNIG00000019003)	ENSTNIG00000019002	ENSTNIG00000001574	cldnj (ENSTNIG00000019001)	sbds (ENSTNIG00000019000)	tyw1 (ENSTNIG00000018999)	CALN1 (ENSTNIG00000018998)	GALNT17 (ENSTNIG00000018997)	ENSTNIG00000000460	rhbdd1 (ENSTNIG00000018996)	eml2 (ENSTNIG00000018995) #34	ENSTNIG00000018994	NOVA1 (ENSTNIG00000018993)	irf2bp1 (ENSTNIG00000018992) #22	foxa3 (ENSTNIG00000018991)	PLD3 (ENSTNIG00000018990)	ENSTNIG00000018989	ENSTNIG00000018988	kcnk6 (ENSTNIG00000018987)	blvrb (ENSTNIG00000018986)	ENSTNIG00000018985	ENSTNIG00000018984	MARK4 (ENSTNIG00000018983)	ckma (ENSTNIG00000018982)	klc3 (ENSTNIG00000018981)	ercc2 (ENSTNIG00000018980)	zgc:154093 (ENSTNIG00000000493)	ZC3H4 (ENSTNIG00000013432)	sae1 (ENSTNIG00000013431)
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00940000158785 #10	ENSGT00940000163335	ENSGT00940000157969	ENSGT00940000163648.a.a.a.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT00940000160457.b	ENSGT00940000158785 #10	ENSGT00940000163335	ENSGT00940000163648.a.a.a.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT00940000165704.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306
Aplocheiloidei	ANCESTRAL SPECIES	84														ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C
Turquoise killifish	MODERN SPECIES	1615	ENSNFUG00015010936	cldna (ENSNFUG00015010931)	cldnj (ENSNFUG00015010925)	ENSNFUG00015010918	SBDS (ENSNFUG00015010901)	ENSNFUG00015010897	tyw1 (ENSNFUG00015010462)	CALN1 (ENSNFUG00015010423)	GALNT17 (ENSNFUG00015010372)	rhbdd1 (ENSNFUG00015010320)	ENSNFUG00015010304	tnni1d (ENSNFUG00015010293)	st8sia1 (ENSNFUG00015010277)	NOVA2 (ENSNFUG00015010245)	ENSNFUG00015010233	IRF2BP1 (ENSNFUG00015010227) #22	foxa3 (ENSNFUG00015010221)	PLD3 (ENSNFUG00015010180)	ENSNFUG00015010160	ENSNFUG00015010142	ENSNFUG00015010085	kcnk6 (ENSNFUG00015010076)	ENSNFUG00015010060	blvrb (ENSNFUG00015010041)	ENSNFUG00015009837	ENSNFUG00015009801	ENSNFUG00015009785	CKM (ENSNFUG00015009734)	klc3 (ENSNFUG00015008637)	ercc2 (ENSNFUG00015008585)	sae1 (ENSNFUG00015008566)
Mangrove rivulus	MODERN SPECIES	770														ENSKMAG00000015047	polr1g (ENSKMAG00000015084)	irf2bp1 (ENSKMAG00000015095) #22	foxa3 (ENSKMAG00000015107)
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT00940000163648.a.a.b	ENSGT00940000164025.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000163513	ENSGT01100000263520.a.a.a.a.b.a.c.a	ENSGT00940000162179.e.a.a.f	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00940000163648.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C
Poecilia	ANCESTRAL SPECIES	2	ENSGT00940000163648.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306
Guppy	MODERN SPECIES	443	ENSPREG00000018395	ENSPREG00000018434	ENSPREG00000018603	ENSPREG00000018633	ENSPREG00000018668	ENSPREG00000018750	sbds (ENSPREG00000018758)	tyw1 (ENSPREG00000018773)	CALN1 (ENSPREG00000018801)	GALNT17 (ENSPREG00000018832)	rhbdd1 (ENSPREG00000018851)	eml2 (ENSPREG00000018891) #34	GPR4 (ENSPREG00000018924) #35	ENSPREG00000018946	ENSPREG00000018959	irf2bp1 (ENSPREG00000018972) #22	foxa3 (ENSPREG00000018993)	PLD3 (ENSPREG00000019004)	ENSPREG00000019036	kcnk6 (ENSPREG00000019057)	ENSPREG00000019068	blvrb (ENSPREG00000019074)	SPTBN4 (ENSPREG00000019109)	ENSPREG00000019161	ENSPREG00000019192	MARK4 (ENSPREG00000019203)	CKM (ENSPREG00000019235)	klc3 (ENSPREG00000019255)	ercc2 (ENSPREG00000019280)	zgc:154093 (ENSPREG00000019316)	ZC3H4 (ENSPREG00000019393)
NAME_6	ANCESTRAL SPECIES	14	ENSGT00940000163648.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000163513	ENSGT00940000164427.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b
Sailfin molly	MODERN SPECIES	15	ENSPLAG00000003853	ENSPLAG00000003810	ENSPLAG00000003799	ENSPLAG00000003703	cldnj (ENSPLAG00000003687)	ENSPLAG00000003648	sbds (ENSPLAG00000003641)	tyw1 (ENSPLAG00000000838)	CALN1 (ENSPLAG00000003587)	GALNT17 (ENSPLAG00000003582)	rhbdd1 (ENSPLAG00000003563)	eml2 (ENSPLAG00000003549) #34	GPR4 (ENSPLAG00000003509) #35	ENSPLAG00000003504	polr1g (ENSPLAG00000023890)	irf2bp1 (ENSPLAG00000023882) #22	foxa3 (ENSPLAG00000023867)	PLD3 (ENSPLAG00000023827)	ENSPLAG00000023816	ENSPLAG00000023804	kcnk6 (ENSPLAG00000023769)	ENSPLAG00000023756	blvrb (ENSPLAG00000023734)	ENSPLAG00000023684	ENSPLAG00000023509	ENSPLAG00000023502	ENSPLAG00000023496	ENSPLAG00000023488	MARK4 (ENSPLAG00000023464)	ENSPLAG00000023366	klc3 (ENSPLAG00000023319)
Amazon molly	MODERN SPECIES	300	ENSPFOG00000020478	cldnf (ENSPFOG00000020479)	CLDN4 (ENSPFOG00000020480)	ENSPFOG00000020481	cldnj (ENSPFOG00000020482)	sbds (ENSPFOG00000015837)	ENSPFOG00000020086	tyw1 (ENSPFOG00000015855)	CALN1 (ENSPFOG00000015955)	GALNT17 (ENSPFOG00000015999)	rhbdd1 (ENSPFOG00000016127)	eml2 (ENSPFOG00000016154) #34	GPR4 (ENSPFOG00000016380) #35	ENSPFOG00000016392	polr1g (ENSPFOG00000016410)	irf2bp1 (ENSPFOG00000016412) #22	foxa3 (ENSPFOG00000016416)	PLD3 (ENSPFOG00000016430)	ENSPFOG00000016465	ENSPFOG00000016469	kcnk6 (ENSPFOG00000016473)	ENSPFOG00000016476	blvrb (ENSPFOG00000016480)	SPTBN4 (ENSPFOG00000016533)	ENSPFOG00000020087	ENSPFOG00000016866	ENSPFOG00000020089	ENSPFOG00000016884	CKM (ENSPFOG00000016916)	klc3 (ENSPFOG00000016941)	ENSPFOG00000016988
Platyfish	MODERN SPECIES	9	ENSXMAG00000019840	tyw1 (ENSXMAG00000013125)	CALN1 (ENSXMAG00000014354)	ENSXMAG00000027814	ENSXMAG00000028386	ENSXMAG00000026578	ENSXMAG00000024290	ENSXMAG00000024619	ENSXMAG00000023292	GALNT17 (ENSXMAG00000013214)	rhbdd1 (ENSXMAG00000013189)	eml2 (ENSXMAG00000013142) #34	ENSXMAG00000026967	ENSXMAG00000013130	polr1g (ENSXMAG00000013127)	irf2bp1 (ENSXMAG00000013117) #22	foxa3 (ENSXMAG00000028583)	PLD3 (ENSXMAG00000013059)	ENSXMAG00000028475	ENSXMAG00000029542	kcnk6 (ENSXMAG00000029960)	ENSXMAG00000012999	ENSXMAG00000025143	ENSXMAG00000028898	blvrb (ENSXMAG00000006057)	SPTBN4 (ENSXMAG00000005963)	ENSXMAG00000024393	ENSXMAG00000026531	ENSXMAG00000024942	ENSXMAG00000024251	MARK4 (ENSXMAG00000005903)
NAME_4	ANCESTRAL SPECIES	85	ENSGT00940000154762.a.a	ENSGT00940000164025.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000164025.b.a	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053	ENSGT00940000160011
Sheepshead minnow	MODERN SPECIES	621														ENSCVAG00000014025	polr1g (ENSCVAG00000000356)	irf2bp1 (ENSCVAG00000014034) #22	foxa3 (ENSCVAG00000014045)	ENSCVAG00000014061	ENSCVAG00000014073	ENSCVAG00000014079	ENSCVAG00000014108	kcnk6 (ENSCVAG00000014123)	ENSCVAG00000014130	blvrb (ENSCVAG00000014148)	ENSCVAG00000014211	ENSCVAG00000014226	ENSCVAG00000014269	ENSCVAG00000014296	MARK4 (ENSCVAG00000014469)	CKM (ENSCVAG00000014525)
Mummichog	MODERN SPECIES	2301	ENSFHEG00000021176	ENSFHEG00000021019	cldnf (ENSFHEG00000020992)	ENSFHEG00000020910	ENSFHEG00000020885	sbds (ENSFHEG00000000708)	tyw1 (ENSFHEG00000020824)	CALN1 (ENSFHEG00000020696)	GALNT17 (ENSFHEG00000020673)	rhbdd1 (ENSFHEG00000020616)	eml2 (ENSFHEG00000020590) #34	GPR4 (ENSFHEG00000020482) #35	ENSFHEG00000020473	ENSFHEG00000020456	ENSFHEG00000020394	irf2bp1 (ENSFHEG00000020388) #22	foxa3 (ENSFHEG00000020383)	ENSFHEG00000020372	ENSFHEG00000020359	ENSFHEG00000020342	kcnk6 (ENSFHEG00000020169)	ENSFHEG00000020157	blvrb (ENSFHEG00000020139)	ENSFHEG00000020079	ENSFHEG00000019938	ENSFHEG00000019931	ENSFHEG00000019915	ENSFHEG00000019905
Oryzias	ANCESTRAL SPECIES	8	ENSGT00950000183052.b.c.b.a.c.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053	ENSGT00940000160011	ENSGT00550000075007	ENSGT00530000063950.a.b	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b
Oryzias_b	ANCESTRAL SPECIES	32	ENSGT00950000183052.b.c.b.a.c.a.b	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053	ENSGT00940000160011	ENSGT00550000075007	ENSGT00530000063950.a.b	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00390000010744.m.c	ENSGT00940000156014.g	ENSGT00940000159212.a	ENSGT00510000047059	ENSGT00390000008135	ENSGT00390000007499	ENSGT00940000165067	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000165704.a.b	ENSGT00940000162095.i.b	ENSGT00940000154762.a.b.a.a.a.a	ENSGT00940000154762.a.a	ENSGT00940000163648.a.a.a.b
Indian medaka	MODERN SPECIES	12	MARK4 (ENSOMEG00000023266)	CKM (ENSOMEG00000023209)	klc3 (ENSOMEG00000023186)	ercc2 (ENSOMEG00000023166)	zgc:154093 (ENSOMEG00000023141)	ZC3H4 (ENSOMEG00000023128)	sae1 (ENSOMEG00000023105)	ENSOMEG00000023085	pak4 (ENSOMEG00000023071)	zgc:152863 (ENSOMEG00000023052)	eml2 (ENSOMEG00000023021) #34	GPR4 (ENSOMEG00000022961) #35	ENSOMEG00000022949	ENSOMEG00000022934	polr1g (ENSOMEG00000022922)	irf2bp1 (ENSOMEG00000022903) #22	foxa3 (ENSOMEG00000000616)	PLD3 (ENSOMEG00000022889)	ENSOMEG00000022850	rhbdd1 (ENSOMEG00000000609)	GALNT17 (ENSOMEG00000022790)	CALN1 (ENSOMEG00000022768)	ENSOMEG00000022756	sbds (ENSOMEG00000022747)	ENSOMEG00000022738	cldnj (ENSOMEG00000022730)	ENSOMEG00000022727	cldnf (ENSOMEG00000022682)	cldne (ENSOMEG00000022669)	cldna (ENSOMEG00000022640)	ENSOMEG00000022635
Javanese ricefish	MODERN SPECIES	4	ENSOJAG00000008213	ENSOJAG00000008189	sbds (ENSOJAG00000008156)	tyw1 (ENSOJAG00000006793)	CALN1 (ENSOJAG00000006682)	GALNT17 (ENSOJAG00000006465)	rhbdd1 (ENSOJAG00000006437)	PLD3 (ENSOJAG00000005957)	ENSOJAG00000020071	ENSOJAG00000020063	ENSOJAG00000020044	eml2 (ENSOJAG00000017141) #34	ENSOJAG00000017065	ENSOJAG00000017038	ENSOJAG00000017029	irf2bp1 (ENSOJAG00000017006) #22	foxa3 (ENSOJAG00000016992)	PLD3 (ENSOJAG00000016828)	ENSOJAG00000016810	ENSOJAG00000016800	ENSOJAG00000016785	ENSOJAG00000016760	ENSOJAG00000016748	zgc:152863 (ENSOJAG00000016739)	pak4 (ENSOJAG00000016724)	ccdc9 (ENSOJAG00000016705)	sae1 (ENSOJAG00000016671)	ZC3H4 (ENSOJAG00000016628)	zgc:154093 (ENSOJAG00000016621)	ercc2 (ENSOJAG00000015767)	CKM (ENSOJAG00000014807)
Oryzias_a	ANCESTRAL SPECIES	8	ENSGT00950000183052.b.c.b.a.c.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053	ENSGT00940000160011	ENSGT00550000075007	ENSGT00530000063950.a.b	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000153887.B #34	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000165067	ENSGT00940000165704.b	ENSGT00940000163648.a.a.b	ENSGT00940000154762.a.a	ENSGT00940000163648.a.a.a.a	ENSGT00940000163648.a.a.a.b	ENSGT00940000158785 #10
Chinese medaka	MODERN SPECIES	538	ENSOSIG00000015396	MARK4 (ENSOSIG00000015171)	ENSOSIG00000015170	CKM (ENSOSIG00000015130)	klc3 (ENSOSIG00000013862)	ercc2 (ENSOSIG00000013851)	zgc:154093 (ENSOSIG00000013850)	sae1 (ENSOSIG00000013848)	ccdc9 (ENSOSIG00000013846)	pak4 (ENSOSIG00000013841)	zgc:152863 (ENSOSIG00000013838)	eml2 (ENSOSIG00000013652) #34	ENSOSIG00000013637	ENSOSIG00000013632	ENSOSIG00000013630	irf2bp1 (ENSOSIG00000013626) #22	foxa3 (ENSOSIG00000013623)	ENSOSIG00000013619	sbds (ENSOSIG00000013618)	tyw1 (ENSOSIG00000012772)	ENSOSIG00000012755	GALNT17 (ENSOSIG00000012752)	cldnj (ENSOSIG00000012749)	ENSOSIG00000012747	ENSOSIG00000012744	tgfb1a (ENSOSIG00000012742)	ENSOSIG00000012740	ENSOSIG00000012737	AXL (ENSOSIG00000012736)	ENSOSIG00000012735	ppp5c (ENSOSIG00000012706) #10
Japanese Medaka HdrR	MODERN SPECIES	4	ENSORLG00000001611	CKM (ENSORLG00000030295)	klc3 (ENSORLG00000001581)	ercc2 (ENSORLG00000001570)	zgc:154093 (ENSORLG00000001542)	ZC3H4 (ENSORLG00000029286)	sae1 (ENSORLG00000001538)	ccdc9 (ENSORLG00000001516)	pak4 (ENSORLG00000001503)	zgc:152863 (ENSORLG00000024927)	eml2 (ENSORLG00000001463) #34	ENSORLG00000025858	ENSORLG00000021860	ENSORLG00000027761	ENSORLG00000001427	irf2bp1 (ENSORLG00000024529) #22	foxa3 (ENSORLG00000022237)	PLD3 (ENSORLG00000001418)	ENSORLG00000001408	sbds (ENSORLG00000023489)	tyw1 (ENSORLG00000001393)	CALN1 (ENSORLG00000022802)	GALNT17 (ENSORLG00000001357)	rhbdd1 (ENSORLG00000001341)	ENSORLG00000001327	ENSORLG00000027059	ENSORLG00000001331	ENSORLG00000001323	ENSORLG00000001319	ENSORLG00000001315	ENSORLG00000001306
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00940000165704.a.a	ENSGT00940000165704.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b
Pomacentridae	ANCESTRAL SPECIES	27	ENSGT00940000163648.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000162179.e.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306
Pomacentridae_A	ANCESTRAL SPECIES	32	ENSGT00940000154762.a.b.a.a.a.a	ENSGT00940000163648.a.a.b	ENSGT00940000165704.a.b	ENSGT00940000164025.b.a	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000162179.e.a.a	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306
Amphiprion	ANCESTRAL SPECIES	30	ENSGT00940000162095	ENSGT00940000154762.a.a	ENSGT00940000163648.a.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000162179.e.a.a	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT01070000253869	ENSGT00940000167306
Clown anemonefish	MODERN SPECIES	2317															polr1g (ENSAOCG00000007088)	irf2bp1 (ENSAOCG00000007082) #22	foxa3 (ENSAOCG00000007074)	PLD3 (ENSAOCG00000007070)	ENSAOCG00000007057	ENSAOCG00000007029	eri1 (ENSAOCG00000007015)
Orange clownfish	MODERN SPECIES	23	ENSAPEG00000015528	ENSAPEG00000015596	ENSAPEG00000015744	ENSAPEG00000015851	ENSAPEG00000015868	ENSAPEG00000015884	sbds (ENSAPEG00000015897)	tyw1 (ENSAPEG00000015939)	CALN1 (ENSAPEG00000016013)	GALNT17 (ENSAPEG00000016038)	rhbdd1 (ENSAPEG00000016079)	eml2 (ENSAPEG00000016094) #34	GPR4 (ENSAPEG00000016125) #35	ENSAPEG00000016133	polr1g (ENSAPEG00000016153)	irf2bp1 (ENSAPEG00000016156) #22	foxa3 (ENSAPEG00000016188)	PLD3 (ENSAPEG00000016198)	ENSAPEG00000016222	ENSAPEG00000016237	kcnk6 (ENSAPEG00000016275)	ENSAPEG00000016281	blvrb (ENSAPEG00000016288)	ENSAPEG00000016312	ENSAPEG00000016445	ENSAPEG00000016462	ENSAPEG00000016473	ENSAPEG00000016483	MARK4 (ENSAPEG00000016512)	CKM (ENSAPEG00000016617)	ENSAPEG00000016649
Spiny chromis	MODERN SPECIES	183								ENSAPOG00000005950	SPATA20 (ENSAPOG00000006013)	ENSAPOG00000006026	rhbdd1 (ENSAPOG00000006055)	eml2 (ENSAPOG00000006140) #34	ENSAPOG00000006159	ENSAPOG00000006189	ENSAPOG00000001121	irf2bp1 (ENSAPOG00000006212) #22	foxa3 (ENSAPOG00000006218)	PLD3 (ENSAPOG00000006252)	ENSAPOG00000006295	ENSAPOG00000006427	kcnk6 (ENSAPOG00000006461)	ENSAPOG00000006470
Bicolor damselfish	MODERN SPECIES	951															ENSSPAG00000014760	irf2bp1 (ENSSPAG00000014779) #22	foxa3 (ENSSPAG00000014785)	PLD3 (ENSSPAG00000014796)	ENSSPAG00000014824	kcnk6 (ENSSPAG00000014842)	ENSSPAG00000014850	blvrb (ENSSPAG00000014865)	ENSSPAG00000014910	ENSSPAG00000015016	ENSSPAG00000015056	ENSSPAG00000015074	ENSSPAG00000015078	ENSSPAG00000015092
Cichlidae	ANCESTRAL SPECIES	21	ENSGT00940000154762.a.b.a.a.a.a	ENSGT00940000163648.a.a.b	ENSGT00940000165704.b.b	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C
Pseudocrenilabrinae	ANCESTRAL SPECIES	19	ENSGT00940000165704.b.a.a.a.b.d.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	15	ENSGT00940000164025.a.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000159555.v.a	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C
Haplochromini	ANCESTRAL SPECIES	15	ENSGT00940000164025.a.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a.h	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053
Burton s mouthbrooder	MODERN SPECIES	416	cldna (ENSHBUG00000000051)	ENSHBUG00000002715	ENSHBUG00000002665	sbds (ENSHBUG00000002660)	ENSHBUG00000002648	tyw1 (ENSHBUG00000002640)	CALN1 (ENSHBUG00000002607)	ENSHBUG00000002597	rhbdd1 (ENSHBUG00000002590)	ENSHBUG00000002575	ENSHBUG00000002569	eml2 (ENSHBUG00000002552) #34	GPR4 (ENSHBUG00000002495) #35	NOVA1 (ENSHBUG00000002485)	polr1g (ENSHBUG00000001063)	irf2bp1 (ENSHBUG00000002463) #22	foxa3 (ENSHBUG00000002454)	PLD3 (ENSHBUG00000002445)	ENSHBUG00000002424	kcnk6 (ENSHBUG00000002403)	ENSHBUG00000002392	blvrb (ENSHBUG00000002376)	ENSHBUG00000002354	ENSHBUG00000002320	ENSHBUG00000002307	MARK4 (ENSHBUG00000002284)	CKM (ENSHBUG00000002240)	klc3 (ENSHBUG00000002224)	ercc2 (ENSHBUG00000002187)	zgc:154093 (ENSHBUG00000002138)	ZC3H4 (ENSHBUG00000002125)
Haplochromini_A	ANCESTRAL SPECIES	23	ENSGT00940000164025.a.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a.h	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053
Haplochromini_B	ANCESTRAL SPECIES	27	ENSGT00940000164025.a.a.b	ENSGT00940000154762.a.b.a.b.b	ENSGT00940000165067	ENSGT00390000007499	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a.h	ENSGT00940000156014.g	ENSGT00390000010744.m.c	ENSGT00950000182825.A.a.b.a.b.a.a.a.b.h.c	ENSGT00940000177245	ENSGT00940000153887.B #34	ENSGT01100000263537.b.b.c.a.a #35	ENSGT00940000155573.g.a	ENSGT00450000040362	ENSGT00940000162120.f.b #22	ENSGT00940000166203	ENSGT00950000183059.b.b	ENSGT00940000165073.a.b.b.a	ENSGT00940000160509	ENSGT00940000168703	ENSGT00390000014810.a	ENSGT00940000156343.lb.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000162921	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000159555.v.a	ENSGT00950000182772.A.a.a.b.r.b	ENSGT00940000167306	ENSGT00950000182970.C	ENSGT00940000165053
Eastern happy	MODERN SPECIES	5	cldna (ENSACLG00000018893)	ENSACLG00000018885	ENSACLG00000018806	cldnj (ENSACLG00000018793)	ENSACLG00000018780	sbds (ENSACLG00000018750)	tyw1 (ENSACLG00000018688)	ENSACLG00000018655	GALNT17 (ENSACLG00000018583)	rhbdd1 (ENSACLG00000018526)	ENSACLG00000018474	eml2 (ENSACLG00000018375) #34	GPR4 (ENSACLG00000018352) #35	ENSACLG00000018329	polr1g (ENSACLG00000018258)	irf2bp1 (ENSACLG00000018248) #22	foxa3 (ENSACLG00000018238)	PLD3 (ENSACLG00000018212)	ENSACLG00000018188	ENSACLG00000018176	kcnk6 (ENSACLG00000018159)	ENSACLG00000018139	blvrb (ENSACLG00000018120)	SPTBN4 (ENSACLG00000017958)	ENSACLG00000017941	ENSACLG00000017925	ENSACLG00000017849	MARK4 (ENSACLG00000017756)	CKM (ENSACLG00000017693)	klc3 (ENSACLG00000017645)	ercc2 (ENSACLG00000017573)
Zebra mbuna	MODERN SPECIES	1096	ENSMZEG00005024333	cldnj (ENSMZEG00005024383)	ENSMZEG00005024384	sbds (ENSMZEG00005024385)	tyw1 (ENSMZEG00005024386)	CALN1 (ENSMZEG00005024389)	GALNT17 (ENSMZEG00005024392)	rhbdd1 (ENSMZEG00005024395)	ENSMZEG00005024397	ENSMZEG00005024399	ENSMZEG00005024400	eml2 (ENSMZEG00005024403) #34	GPR4 (ENSMZEG00005024405) #35	ENSMZEG00005024407	polr1g (ENSMZEG00005024408)	irf2bp1 (ENSMZEG00005024410) #22	foxa3 (ENSMZEG00005024411)	PLD3 (ENSMZEG00005024412)	ENSMZEG00005024414	kcnk6 (ENSMZEG00005024417)	ENSMZEG00005024419	blvrb (ENSMZEG00005024420)	SPTBN4 (ENSMZEG00005024422)	ENSMZEG00005024423	ENSMZEG00005024424	ENSMZEG00005024426	MARK4 (ENSMZEG00005024430)	CKM (ENSMZEG00005024436)	klc3 (ENSMZEG00005024438)	ercc2 (ENSMZEG00005024441)	zgc:154093 (ENSMZEG00005024445)
P. nyererei	MODERN SPECIES	447	cldnj (ENSPNYG00000022422)	ENSPNYG00000022416	sbds (ENSPNYG00000022403)	tyw1 (ENSPNYG00000022381)	CALN1 (ENSPNYG00000022372)	GALNT17 (ENSPNYG00000022360)	rhbdd1 (ENSPNYG00000022350)	ENSPNYG00000022341	ENSPNYG00000022338	ENSPNYG00000022333	eml2 (ENSPNYG00000022324) #34	ENSPNYG00000022298	GPR4 (ENSPNYG00000022294) #35	ENSPNYG00000022283	polr1g (ENSPNYG00000022270)	irf2bp1 (ENSPNYG00000022257) #22	foxa3 (ENSPNYG00000022252)	PLD3 (ENSPNYG00000022240)	ENSPNYG00000022215	kcnk6 (ENSPNYG00000022202)	ENSPNYG00000022189	blvrb (ENSPNYG00000022174)	ENSPNYG00000022129	ENSPNYG00000022104	MARK4 (ENSPNYG00000022081)	CKM (ENSPNYG00000022064)	klc3 (ENSPNYG00000022051)	ercc2 (ENSPNYG00000022007)	zgc:154093 (ENSPNYG00000021986)	ZC3H4 (ENSPNYG00000021966)	sae1 (ENSPNYG00000021940)
Lyretail cichlid	MODERN SPECIES	426	ENSNBRG00000017075	ENSNBRG00000017048	ENSNBRG00000017036	sbds (ENSNBRG00000017027)	tyw1 (ENSNBRG00000016996)	CALN1 (ENSNBRG00000016973)	GALNT17 (ENSNBRG00000016955)	rhbdd1 (ENSNBRG00000016932)	tuba1c (ENSNBRG00000016916)	ENSNBRG00000016898	eml2 (ENSNBRG00000016871) #34	GPR4 (ENSNBRG00000016835) #35	ENSNBRG00000016812	ENSNBRG00000016780	polr1g (ENSNBRG00000016766)	irf2bp1 (ENSNBRG00000016755) #22	foxa3 (ENSNBRG00000016745)	ENSNBRG00000016735	ENSNBRG00000016719	kcnk6 (ENSNBRG00000016706)	ENSNBRG00000016688	blvrb (ENSNBRG00000016659)	ENSNBRG00000016630	ENSNBRG00000016577	ENSNBRG00000016550	ENSNBRG00000016537	MARK4 (ENSNBRG00000016515)	ENSNBRG00000016500	ENSNBRG00000016494	ENSNBRG00000016461	ercc2 (ENSNBRG00000016385)
Nile tilapia	MODERN SPECIES	5	cldnj (ENSONIG00000020461)	ENSONIG00000033089	sbds (ENSONIG00000005874)	tyw1 (ENSONIG00000005872)	CALN1 (ENSONIG00000005871)	GALNT17 (ENSONIG00000005864)	rhbdd1 (ENSONIG00000005862)	ENSONIG00000041588	rhbdd1 (ENSONIG00000042661)	ENSONIG00000028350	eml2 (ENSONIG00000007658) #34	gpr4 (ENSONIG00000030728) #35	ENSONIG00000039818	NOVA1 (ENSONIG00000007665)	polr1g (ENSONIG00000035771)	irf2bp1 (ENSONIG00000007666) #22	foxa3 (ENSONIG00000032875)	PLD3 (ENSONIG00000007668)	ENSONIG00000032673	ENSONIG00000028819	kcnk6 (ENSONIG00000007677)	ENSONIG00000032315	blvrb (ENSONIG00000007679)	ENSONIG00000041911	SPTBN4 (ENSONIG00000007681)	ENSONIG00000037847	MARK4 (ENSONIG00000007711)	CKM (ENSONIG00000007718)	ENSONIG00000029316	klc3 (ENSONIG00000007722)	ercc2 (ENSONIG00000007730)
Pinecone sodierfish	MODERN SPECIES	4	ENSMMDG00005019141	CKM (ENSMMDG00005019131)	klc3 (ENSMMDG00005019124)	ercc2 (ENSMMDG00005019115)	ZC3H4 (ENSMMDG00005019110)	ENSMMDG00005019107	ENSMMDG00005019103	panx1a (ENSMMDG00005019101)	rhbdd1 (ENSMMDG00005019094)	rhbdd1 (ENSMMDG00005019092)	rhbdd1 (ENSMMDG00005019090)	eml2 (ENSMMDG00005017194) #34	ENSMMDG00005017118	ENSMMDG00005017111	polr1g (ENSMMDG00005017108)	irf2bp1 (ENSMMDG00005017105) #22	foxa3 (ENSMMDG00005017101)	PLD3 (ENSMMDG00005017094)	HIPK4 (ENSMMDG00005017080)	ENSMMDG00005017074	kcnk6 (ENSMMDG00005017070)	ENSMMDG00005017068	blvrb (ENSMMDG00005017067)	SPTBN4 (ENSMMDG00005001948)	ENSMMDG00005001203	ENSMMDG00005001178	clns1a (ENSMMDG00005001164)	aqp11 (ENSMMDG00005010472)	ENSMMDG00005010469	pak1 (ENSMMDG00005009696)	myo7aa (ENSMMDG00005009670)
Cod	MODERN SPECIES	7	pak1 (ENSGMOG00000012273)	ENSGMOG00000014303	myo7aa (ENSGMOG00000014332)	ompa (ENSGMOG00000020395)	ENSGMOG00000014423	dcun1d5 (ENSGMOG00000014465)	ENSGMOG00000014480	ENSGMOG00000014520	ENSGMOG00000014534	ENSGMOG00000002474 #34	ENSGMOG00000036044	ENSGMOG00000037111	ENSGMOG00000030287 #35	ENSGMOG00000027146	ENSGMOG00000032237	irf2bp1 (ENSGMOG00000019134) #22	foxa3 (ENSGMOG00000023160)	ENSGMOG00000030646	PLD3 (ENSGMOG00000019115)	ENSGMOG00000030523	ENSGMOG00000030129	kcnk6 (ENSGMOG00000019070)	ENSGMOG00000032660	blvrb (ENSGMOG00000019058)	SPTBN4 (ENSGMOG00000019018)	ENSGMOG00000000494	ENSGMOG00000025093	ENSGMOG00000009613	CKM (ENSGMOG00000009605)	klc3 (ENSGMOG00000007334)	ercc2 (ENSGMOG00000004258)
Reedfish	MODERN SPECIES	9	ENSECRG00000017993	rnaset2l (ENSECRG00000017970)	ENSECRG00000017941	zgc:113149 (ENSECRG00000017927)	zgc:101731 (ENSECRG00000022788)	capns1b (ENSECRG00000022783)	zgc:162698 (ENSECRG00000022778)	alkbh6 (ENSECRG00000022769)	CLIP3 (ENSECRG00000022745)	ENSECRG00000022717	ENSECRG00000022693	eml2 (ENSECRG00000022671) #34	GPR4 (ENSECRG00000022667) #35	ENSECRG00000022663	nova2 (ENSECRG00000022658)	irf2bp1 (ENSECRG00000022654) #22	ENSECRG00000022651	foxa3 (ENSECRG00000022647)	PLD3 (ENSECRG00000022637)	ENSECRG00000022626	napab (ENSECRG00000022618)	ENSECRG00000022611	B3GNT8 (ENSECRG00000022609)	bckdha (ENSECRG00000022598)	exosc5 (ENSECRG00000022583)	TMEM91 (ENSECRG00000022576)	MAP4K1 (ENSECRG00000022548)	eif3k (ENSECRG00000022537)	ENSECRG00000022527	actn4 (ENSECRG00000022497)	slc8a2a (ENSECRG00000022465)