Glires ANCESTRAL SPECIES 2 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT01030000234553.b.b.d.c.b.b ##14 ENSGT01030000234553.b.b.d.c.b.a.a.a #14 ENSGT01030000234553.b.b.d.c.b.a.a.b ##14 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000160900 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Rodentia ANCESTRAL SPECIES 2 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT01030000234553.b.b.d.c.b.b ##14 ENSGT01030000234553.b.b.d.c.b.a.a.a #14 ENSGT01030000234553.b.b.d.c.b.a.a.b.b ##14 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000160900 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Rodentia_B ANCESTRAL SPECIES 26 ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT01030000234553.b.b.d.c.b.a.a.a #14 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000160900 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Myomorpha ANCESTRAL SPECIES 36 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT01030000234553.b.b.d.c.b.a.a.a.b #14 ENSGT00390000004778 ENSGT01030000234553.b.b.d.c.b.a.a.a.a ##14 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000160900 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Muroidea ANCESTRAL SPECIES 37 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT01030000234553.b.b.d.c.b.a.a.a.b #14 ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a ##14 ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b ##14 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000160900 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Muroidea_A ANCESTRAL SPECIES 4 ENSGT00940000153110.A ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000153629.a.a #29 ENSGT00940000156409 #30 ENSGT00940000155820 #31 ENSGT00550000074950 #32 ENSGT00940000158502 #33 ENSGT00940000158653 #34 ENSGT00390000010170.a.a #36 ENSGT00940000162607 #37 ENSGT00440000035348.l Cricetidae DUPLICATION Cricetidae ANCESTRAL SPECIES 3 ENSGT00940000153110.A ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958.a #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000153629.a.a #29 ENSGT00940000156409 #30 ENSGT00940000155820 #31 ENSGT00550000074950 #32 ENSGT00940000158502 #33 ENSGT00940000158653 #34 ENSGT00390000010170.a.a #36 ENSGT00940000162607 #37 ENSGT00440000035348.l Cricetinae ANCESTRAL SPECIES 8 ENSGT00940000153110.A ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958.a #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000153629.a.a #29 ENSGT00940000156409 #30 ENSGT00940000155820 #31 ENSGT00550000074950 #32 ENSGT00940000158502 #33 ENSGT00940000158653 #34 ENSGT00390000010170.a.a #36 ENSGT00940000162607 #37 ENSGT00940000159882 Chinese hamster chok1gshd MODERN SPECIES 144 Slc41a3 (ENSCGRG00001010264) #7 Iqsec1 (ENSCGRG00001001080) #8 ENSCGRG00001020283 #9 Nup210 (ENSCGRG00001004330) #10 Hdac11 (ENSCGRG00001018847) #11 Fbln2 (ENSCGRG00001005743) #12 Wnt7a (ENSCGRG00001010427) #13 ENSCGRG00001011855 #14 ENSCGRG00001016456 #15 ENSCGRG00001017374 #16 Tmem43 (ENSCGRG00001001263) #17 Xpc (ENSCGRG00001014190) #18 Lsm3 (ENSCGRG00001017598) #19 Slc6a6 (ENSCGRG00001019005) #20 Grip2 (ENSCGRG00001021106) #21 Ccdc174 (ENSCGRG00001021754) #22 4930590J08Rik (ENSCGRG00001017889) #23 Fgd5 (ENSCGRG00001013433) #24 Nr2c2 (ENSCGRG00001009601) #25 Mrps25 (ENSCGRG00001016556) #26 Rbsn (ENSCGRG00001018030) #27 Trh (ENSCGRG00001019768) #28 Prickle2 (ENSCGRG00001005583) #29 Adamts9 (ENSCGRG00001014518) #30 Magi1 (ENSCGRG00001004939) #31 Slc25a26 (ENSCGRG00001000286) #32 Lrig1 (ENSCGRG00001020436) #33 Kbtbd8 (ENSCGRG00001004948) #34 ENSCGRG00001004433 #35 Suclg2 (ENSCGRG00001011522) #36 Tafa1 (ENSCGRG00001014933) #37 Golden Hamster MODERN SPECIES 643 Uroc1 (ENSMAUG00000003968) Zxdc (ENSMAUG00000019913) Cfap100 (ENSMAUG00000018814) Klf15 (ENSMAUG00000005299) ENSMAUG00000014077 Slc41a3 (ENSMAUG00000015587) #7 Iqsec1 (ENSMAUG00000005597) #8 Nup210 (ENSMAUG00000012897) #10 Hdac11 (ENSMAUG00000005003) #11 Fbln2 (ENSMAUG00000021684) #12 Wnt7a (ENSMAUG00000016536) #13 Chchd4 (ENSMAUG00000021415) #16 Tmem43 (ENSMAUG00000021795) #17 Xpc (ENSMAUG00000019920) #18 Grip2 (ENSMAUG00000013630) #21 Ccdc174 (ENSMAUG00000010944) #22 4930590J08Rik (ENSMAUG00000015114) #23 Fgd5 (ENSMAUG00000015411) #24 Nr2c2 (ENSMAUG00000016840) #25 Rbsn (ENSMAUG00000010240) #27 Trh (ENSMAUG00000016316) #28 Prickle2 (ENSMAUG00000013569) #29 Adamts9 (ENSMAUG00000021440) #30 ENSMAUG00000010107 Magi1 (ENSMAUG00000021226) #31 ENSMAUG00000004998 Slc25a26 (ENSMAUG00000021604) #32 Lrig1 (ENSMAUG00000007470) #33 Kbtbd8 (ENSMAUG00000017081) #34 ENSMAUG00000009672 Suclg2 (ENSMAUG00000021321) #36 Cricetidae_B ANCESTRAL SPECIES 14 ENSGT00940000153110.A ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958.a #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000153629.a.a #29 ENSGT00940000156409 #30 ENSGT00940000155820 #31 ENSGT00550000074950 #32 ENSGT00940000158502 #33 ENSGT00940000158653 #34 ENSGT00390000010170.a.a #36 ENSGT00940000162607 #37 ENSGT00440000035348.l Prairie vole MODERN SPECIES 84 Cfap100 (ENSMOCG00000021845) Klf15 (ENSMOCG00000022079) Aldh1l1 (ENSMOCG00000003909) Slc41a3 (ENSMOCG00000017752) #7 Iqsec1 (ENSMOCG00000000442) #8 Nup210 (ENSMOCG00000009601) #10 Hdac11 (ENSMOCG00000000173) #11 Fbln2 (ENSMOCG00000009900) #12 Wnt7a (ENSMOCG00000007580) #13 Chchd4 (ENSMOCG00000019774) #16 Tmem43 (ENSMOCG00000000687) #17 Xpc (ENSMOCG00000002947) #18 Lsm3 (ENSMOCG00000014269) #19 Slc6a6 (ENSMOCG00000016250) #20 Grip2 (ENSMOCG00000015042) #21 ENSMOCG00000019764 #22 ENSMOCG00000020723 ##22 4930590J08Rik (ENSMOCG00000001932) #23 Fgd5 (ENSMOCG00000018507) #24 Nr2c2 (ENSMOCG00000006010) #25 Mrps25 (ENSMOCG00000000775) #26 ENSMOCG00000020109 Trh (ENSMOCG00000020778) #28 Prickle2 (ENSMOCG00000009205) #29 Adamts9 (ENSMOCG00000020918) #30 Magi1 (ENSMOCG00000021420) #31 Slc25a26 (ENSMOCG00000012219) #32 Lrig1 (ENSMOCG00000016641) #33 Kbtbd8 (ENSMOCG00000014034) #34 ENSMOCG00000017135 Suclg2 (ENSMOCG00000019822) #36 Northern American deer mouse MODERN SPECIES 16 Slc41a3 (ENSPEMG00000011388) #7 Iqsec1 (ENSPEMG00000014627) #8 Nup210 (ENSPEMG00000018996) #10 Hdac11 (ENSPEMG00000012425) #11 Fbln2 (ENSPEMG00000000066) #12 Wnt7a (ENSPEMG00000029574) #13 Vmn1r54 (ENSPEMG00000028564) #14 ENSPEMG00000031025 ##14 ENSPEMG00000025082 Chchd4 (ENSPEMG00000012767) #16 Tmem43 (ENSPEMG00000013314) #17 Xpc (ENSPEMG00000015475) #18 ENSPEMG00000015797 #19 Slc6a6 (ENSPEMG00000016693) #20 Grip2 (ENSPEMG00000009285) #21 Ccdc174 (ENSPEMG00000011995) #22 4930590J08Rik (ENSPEMG00000016805) #23 Fgd5 (ENSPEMG00000005651) #24 Mrps25 (ENSPEMG00000015595) #26 Rbsn (ENSPEMG00000026045) #27 Trh (ENSPEMG00000027938) #28 Prickle2 (ENSPEMG00000008467) #29 Adamts9 (ENSPEMG00000001414) #30 Magi1 (ENSPEMG00000018842) #31 ENSPEMG00000029600 Slc25a26 (ENSPEMG00000016974) #32 Lrig1 (ENSPEMG00000013717) #33 ENSPEMG00000007390 ENSPEMG00000030152 #34 Suclg2 (ENSPEMG00000017086) #36 Tafa1 (ENSPEMG00000004313) #37 Cricetidae ANCESTRAL SPECIES ENSGT00440000033958.b ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00440000033958.b ##22 Prairie vole MODERN SPECIES 84 Klf15 (ENSMOCG00000022079) Aldh1l1 (ENSMOCG00000003909) Slc41a3 (ENSMOCG00000017752) #7 Iqsec1 (ENSMOCG00000000442) #8 Nup210 (ENSMOCG00000009601) #10 Hdac11 (ENSMOCG00000000173) #11 Fbln2 (ENSMOCG00000009900) #12 Wnt7a (ENSMOCG00000007580) #13 Chchd4 (ENSMOCG00000019774) #16 Tmem43 (ENSMOCG00000000687) #17 Xpc (ENSMOCG00000002947) #18 Lsm3 (ENSMOCG00000014269) #19 Slc6a6 (ENSMOCG00000016250) #20 Grip2 (ENSMOCG00000015042) #21 ENSMOCG00000019764 #22 ENSMOCG00000020723 ##22 4930590J08Rik (ENSMOCG00000001932) #23 Fgd5 (ENSMOCG00000018507) #24 Nr2c2 (ENSMOCG00000006010) #25 Mrps25 (ENSMOCG00000000775) #26 ENSMOCG00000020109 Trh (ENSMOCG00000020778) #28 Prickle2 (ENSMOCG00000009205) #29 Adamts9 (ENSMOCG00000020918) #30 Magi1 (ENSMOCG00000021420) #31 Slc25a26 (ENSMOCG00000012219) #32 Lrig1 (ENSMOCG00000016641) #33 Kbtbd8 (ENSMOCG00000014034) #34 ENSMOCG00000017135 Suclg2 (ENSMOCG00000019822) #36 Tafa1 (ENSMOCG00000005890) #37 Murinae ANCESTRAL SPECIES 4 ENSGT00940000153110.A ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000153629.a.a #29 ENSGT00940000156409 #30 ENSGT00940000155820 #31 ENSGT00550000074950 #32 ENSGT00940000158502 #33 ENSGT00940000158653 #34 ENSGT00390000010170.a.a #36 ENSGT00940000162607 #37 ENSGT00440000035348.l Mus ANCESTRAL SPECIES 12 ENSGT00940000153110.A ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000153629.a.a #29 ENSGT00940000156409 #30 ENSGT00940000155820 #31 ENSGT00550000074950 #32 ENSGT00940000158502 #33 ENSGT00940000158653 #34 ENSGT00390000010170.a.a #36 ENSGT00940000162607 #37 ENSGT00440000035348.l Mus_A DUPLICATION Mus_A DUPLICATION Mus_A ANCESTRAL SPECIES 7 ENSGT00940000153110.A ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958.c.a #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000153629.a.a #29 ENSGT00940000156409 #30 ENSGT00940000155820 #31 ENSGT00550000074950 #32 ENSGT00940000158502 #33 ENSGT00940000158653 #34 ENSGT00390000010170.a.a #36 ENSGT00940000162607 #37 ENSGT00440000035348.l Mus_B ANCESTRAL SPECIES 15 ENSGT00940000153110.A ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958.c.a #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000153629.a.a #29 ENSGT00940000156409 #30 ENSGT00940000155820 #31 ENSGT00550000074950 #32 ENSGT00940000158502 #33 ENSGT00940000158653 #34 ENSGT00390000010170.a.a #36 ENSGT00940000162607 #37 ENSGT00440000035348.l Mouse MODERN SPECIES 15 Cfap100 (ENSMUSG00000048794) Klf15 (ENSMUSG00000030087) Aldh1l1 (ENSMUSG00000030088) Slc41a3 (ENSMUSG00000030089) #7 Iqsec1 (ENSMUSG00000034312) #8 Nup210 (ENSMUSG00000030091) #10 Hdac11 (ENSMUSG00000034245) #11 Fbln2 (ENSMUSG00000064080) #12 Wnt7a (ENSMUSG00000030093) #13 Chchd4 (ENSMUSG00000034203) #16 Tmem43 (ENSMUSG00000030095) #17 Xpc (ENSMUSG00000030094) #18 Lsm3 (ENSMUSG00000034192) #19 Slc6a6 (ENSMUSG00000030096) #20 Grip2 (ENSMUSG00000030098) #21 Ccdc174 (ENSMUSG00000034083) #22 4930590J08Rik (ENSMUSG00000034063) #23 Fgd5 (ENSMUSG00000034037) #24 Nr2c2 (ENSMUSG00000005893) #25 Mrps25 (ENSMUSG00000014551) #26 Rbsn (ENSMUSG00000014550) #27 Trh (ENSMUSG00000005892) #28 Prickle2 (ENSMUSG00000030020) #29 Adamts9 (ENSMUSG00000030022) #30 Magi1 (ENSMUSG00000045095) #31 Slc25a26 (ENSMUSG00000045100) #32 Lrig1 (ENSMUSG00000030029) #33 Kbtbd8 (ENSMUSG00000030031) #34 Suclg2 (ENSMUSG00000061838) #36 Tafa1 (ENSMUSG00000059187) #37 Nup50l (ENSMUSG00000072878) Mus_C ANCESTRAL SPECIES 18 ENSGT00940000153110.A ENSGT00940000156977 ENSGT00940000160913 ENSGT00950000183042.b #7 ENSGT00940000156915 #8 ENSGT00390000009491.d #10 ENSGT00940000156308 #11 ENSGT00940000156047 #12 ENSGT00940000158523 #13 ENSGT00390000013132.i #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958.c.a #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000153629.a.a #29 ENSGT00940000156409 #30 ENSGT00860000136292 ENSGT00860000136051 ENSGT00940000155820 #31 ENSGT00550000074950 #32 ENSGT00940000158502 #33 ENSGT00940000158653 #34 ENSGT00390000010170.a.a #36 Steppe mouse MODERN SPECIES 3230 Cfap100 (ENSMSIG00000008087) Klf15 (ENSMSIG00000008149) Aldh1l1 (ENSMSIG00000008168) Slc41a3 (ENSMSIG00000008250) #7 Iqsec1 (ENSMSIG00000008326) #8 Nup210 (ENSMSIG00000008561) #10 ENSMSIG00000008823 #11 Fbln2 (ENSMSIG00000008879) #12 Wnt7a (ENSMSIG00000008956) #13 Chchd4 (ENSMSIG00000008979) #16 Tmem43 (ENSMSIG00000009012) #17 Xpc (ENSMSIG00000009045) #18 Lsm3 (ENSMSIG00000009153) #19 Slc6a6 (ENSMSIG00000009201) #20 Grip2 (ENSMSIG00000009391) #21 Ccdc174 (ENSMSIG00000009644) #22 4930590J08Rik (ENSMSIG00000009662) #23 Fgd5 (ENSMSIG00000009754) #24 Nr2c2 (ENSMSIG00000009847) #25 Mrps25 (ENSMSIG00000009916) #26 Rbsn (ENSMSIG00000009926) #27 Trh (ENSMSIG00000009965) #28 ENSMSIG00000009984 Prickle2 (ENSMSIG00000009992) #29 ENSMSIG00000010030 Adamts9 (ENSMSIG00000010039) #30 ENSMSIG00000010285 Mus_A ANCESTRAL SPECIES ENSGT00440000033958.c.b #22 Ryukyu mouse MODERN SPECIES 15 BC048671 (MGP_CAROLIEiJ_G0028641) MGP_CAROLIEiJ_G0028642 Uroc1 (MGP_CAROLIEiJ_G0028643) Zxdc (MGP_CAROLIEiJ_G0028644) Cfap100 (MGP_CAROLIEiJ_G0028645) Klf15 (MGP_CAROLIEiJ_G0028646) MGP_CAROLIEiJ_G0028647 Iqsec1 (MGP_CAROLIEiJ_G0028648) #8 Nup210 (MGP_CAROLIEiJ_G0028649) #10 Hdac11 (MGP_CAROLIEiJ_G0028650) #11 Fbln2 (MGP_CAROLIEiJ_G0028651) #12 Wnt7a (MGP_CAROLIEiJ_G0028652) #13 MGP_CAROLIEiJ_G0028655 #18 Slc6a6 (MGP_CAROLIEiJ_G0028656) #20 MGP_CAROLIEiJ_G0028657 #21 MGP_CAROLIEiJ_G0028658 #22 4930590J08Rik (MGP_CAROLIEiJ_G0028659) #23 Fgd5 (MGP_CAROLIEiJ_G0028660) #24 Nr2c2 (MGP_CAROLIEiJ_G0028661) #25 Mrps25 (MGP_CAROLIEiJ_G0028662) #26 Rbsn (MGP_CAROLIEiJ_G0028663) #27 Trh (MGP_CAROLIEiJ_G0028664) #28 Prickle2 (MGP_CAROLIEiJ_G0028665) #29 Adamts9 (MGP_CAROLIEiJ_G0028666) #30 MGP_CAROLIEiJ_G0028667 Magi1 (MGP_CAROLIEiJ_G0028668) #31 Slc25a26 (MGP_CAROLIEiJ_G0028669) #32 Lrig1 (MGP_CAROLIEiJ_G0028670) #33 Kbtbd8 (MGP_CAROLIEiJ_G0028671) #34 Suclg2 (MGP_CAROLIEiJ_G0028672) #36 MGP_CAROLIEiJ_G0028673 #37 Mus_B ANCESTRAL SPECIES ENSGT00440000033958.c.b #22 Mus_C ANCESTRAL SPECIES ENSGT00440000033958.c.b #22 Steppe mouse MODERN SPECIES 2994 Lama4 (ENSMSIG00000001276) Fam229b (ENSMSIG00000001215) Tube1 (ENSMSIG00000001171) Ccn6 (ENSMSIG00000001159) ENSMSIG00000001142 ENSMSIG00000001131 Fyn (ENSMSIG00000001064) Traf3ip2 (ENSMSIG00000001008) ENSMSIG00000000979 #22 Rev3l (ENSMSIG00000000767) ENSMSIG00000000716 ENSMSIG00000000705 ENSMSIG00000000678 ENSMSIG00000000663 Mfsd4b5 (ENSMSIG00000000610) Mfsd4b1 (ENSMSIG00000000578) Slc16a10 (ENSMSIG00000000537) ENSMSIG00000000467 ENSMSIG00000000433 ENSMSIG00000000270 ENSMSIG00000000163 Mus_A ANCESTRAL SPECIES ENSGT00440000033958.d #22 Mus_B ANCESTRAL SPECIES ENSGT00440000033958.d #22 Mus_C ANCESTRAL SPECIES ENSGT00440000033958.d #22 spretus MODERN SPECIES 15 Cfap100 (MGP_SPRETEiJ_G0029669) Klf15 (MGP_SPRETEiJ_G0029670) Aldh1l1 (MGP_SPRETEiJ_G0029671) Slc41a3 (MGP_SPRETEiJ_G0029672) #7 Iqsec1 (MGP_SPRETEiJ_G0029673) #8 Nup210 (MGP_SPRETEiJ_G0029674) #10 Hdac11 (MGP_SPRETEiJ_G0029675) #11 Fbln2 (MGP_SPRETEiJ_G0029676) #12 Wnt7a (MGP_SPRETEiJ_G0029677) #13 Chchd4 (MGP_SPRETEiJ_G0029678) #16 Tmem43 (MGP_SPRETEiJ_G0029679) #17 Xpc (MGP_SPRETEiJ_G0029680) #18 Lsm3 (MGP_SPRETEiJ_G0029681) #19 MGP_SPRETEiJ_G0029682 #20 Grip2 (MGP_SPRETEiJ_G0029683) #21 Ccdc174 (MGP_SPRETEiJ_G0029684) #22 4930590J08Rik (MGP_SPRETEiJ_G0029685) #23 Fgd5 (MGP_SPRETEiJ_G0029686) #24 Nr2c2 (MGP_SPRETEiJ_G0029687) #25 Mrps25 (MGP_SPRETEiJ_G0029688) #26 Rbsn (MGP_SPRETEiJ_G0029689) #27 Trh (MGP_SPRETEiJ_G0029690) #28 Prickle2 (MGP_SPRETEiJ_G0029691) #29 Adamts9 (MGP_SPRETEiJ_G0029692) #30 MGP_SPRETEiJ_G0029693 MGP_SPRETEiJ_G0029694 Magi1 (MGP_SPRETEiJ_G0029695) #31 Slc25a26 (MGP_SPRETEiJ_G0029696) #32 Lrig1 (MGP_SPRETEiJ_G0029697) #33 Kbtbd8 (MGP_SPRETEiJ_G0029698) #34 Suclg2 (MGP_SPRETEiJ_G0029699) #36 Shrew mouse MODERN SPECIES 11 Cfap100 (MGP_PahariEiJ_G0022390) Klf15 (MGP_PahariEiJ_G0022391) Aldh1l1 (MGP_PahariEiJ_G0022392) Slc41a3 (MGP_PahariEiJ_G0022393) #7 Iqsec1 (MGP_PahariEiJ_G0022394) #8 Nup210 (MGP_PahariEiJ_G0022395) #10 Hdac11 (MGP_PahariEiJ_G0022396) #11 Fbln2 (MGP_PahariEiJ_G0022397) #12 Wnt7a (MGP_PahariEiJ_G0022398) #13 Chchd4 (MGP_PahariEiJ_G0022399) #16 Tmem43 (MGP_PahariEiJ_G0022400) #17 Xpc (MGP_PahariEiJ_G0022401) #18 Lsm3 (MGP_PahariEiJ_G0022402) #19 Slc6a6 (MGP_PahariEiJ_G0022403) #20 Grip2 (MGP_PahariEiJ_G0022404) #21 Ccdc174 (MGP_PahariEiJ_G0022405) #22 4930590J08Rik (MGP_PahariEiJ_G0022406) #23 Fgd5 (MGP_PahariEiJ_G0022407) #24 Nr2c2 (MGP_PahariEiJ_G0022408) #25 Mrps25 (MGP_PahariEiJ_G0022409) #26 Rbsn (MGP_PahariEiJ_G0022410) #27 Trh (MGP_PahariEiJ_G0022411) #28 Prickle2 (MGP_PahariEiJ_G0022412) #29 Adamts9 (MGP_PahariEiJ_G0022413) #30 MGP_PahariEiJ_G0022414 MGP_PahariEiJ_G0022415 MGP_PahariEiJ_G0022416 MGP_PahariEiJ_G0022417 Magi1 (MGP_PahariEiJ_G0022418) #31 Slc25a26 (MGP_PahariEiJ_G0022419) #32 Lrig1 (MGP_PahariEiJ_G0022420) #33 Rat MODERN SPECIES 14 Cfap100 (ENSRNOG00000017959) Klf15 (ENSRNOG00000017808) Aldh1l1 (ENSRNOG00000047023) Slc41a3 (ENSRNOG00000045821) #7 Iqsec1 (ENSRNOG00000060350) #8 Nup210 (ENSRNOG00000005390) #10 Hdac11 (ENSRNOG00000006824) #11 Fbln2 (ENSRNOG00000007338) #12 Wnt7a (ENSRNOG00000048782) #13 Chchd4-ps1 (ENSRNOG00000022466) #16 Tmem43 (ENSRNOG00000007519) #17 Xpc (ENSRNOG00000008274) #18 Lsm3 (ENSRNOG00000008733) #19 Slc6a6 (ENSRNOG00000009019) #20 Grip2 (ENSRNOG00000009726) #21 Ccdc174 (ENSRNOG00000010090) #22 C4h3orf20 (ENSRNOG00000022155) #23 Fgd5 (ENSRNOG00000010213) #24 Nr2c2 (ENSRNOG00000010536) #25 Mrps25 (ENSRNOG00000010912) #26 Rbsn (ENSRNOG00000011391) #27 Trh (ENSRNOG00000011824) #28 Prickle2 (ENSRNOG00000012364) #29 Adamts9 (ENSRNOG00000023257) #30 Gm15737 (ENSRNOG00000064375) ENSRNOG00000064824 Magi1 (ENSRNOG00000022060) #31 LOC100361920 (ENSRNOG00000052174) ENSRNOG00000071067 Slc25a26 (ENSRNOG00000012831) #32 Lrig1 (ENSRNOG00000012952) #33 Upper Galilee mountains blind mole rat MODERN SPECIES 1707 ENSNGAG00000010769 ##14 ENSNGAG00000008249 ##14 Chchd4 (ENSNGAG00000010995) #16 Tmem43 (ENSNGAG00000000844) #17 Xpc (ENSNGAG00000022710) #18 ENSNGAG00000022450 #19 Slc6a6 (ENSNGAG00000022156) #20 Grip2 (ENSNGAG00000011926) #21 Ccdc174 (ENSNGAG00000011049) #22 Fgd5 (ENSNGAG00000024178) #24 Nr2c2 (ENSNGAG00000022501) #25 Mrps25 (ENSNGAG00000021861) #26 Rbsn (ENSNGAG00000022967) #27 Trh (ENSNGAG00000022332) #28 Tmcc1 (ENSNGAG00000010573) Plxnd1 (ENSNGAG00000020476) H1f8 (ENSNGAG00000023630) Rho (ENSNGAG00000020656) Ift122 (ENSNGAG00000022462) ENSNGAG00000017381 Efcab12 (ENSNGAG00000008314) ENSNGAG00000024001 Cand2 (ENSNGAG00000024002) Tmem40 (ENSNGAG00000021850) Lesser Egyptian jerboa MODERN SPECIES 45 Commd10 (ENSJJAG00000019310) Arl14epl (ENSJJAG00000014960) Lvrn (ENSJJAG00000022104) ENSJJAG00000009764 ENSJJAG00000013169 Cdo1 (ENSJJAG00000010804) ENSJJAG00000011849 ENSJJAG00000014321 ENSJJAG00000012573 Fem1c (ENSJJAG00000017855) ENSJJAG00000013957 Ccdc112 (ENSJJAG00000018302) Pggt1b (ENSJJAG00000022637) Trim36 (ENSJJAG00000016437) Kcnn2 (ENSJJAG00000014162) Ccdc174 (ENSJJAG00000014232) #22 4930590J08Rik (ENSJJAG00000010892) #23 Fgd5 (ENSJJAG00000001082) #24 Nr2c2 (ENSJJAG00000016580) #25 Mrps25 (ENSJJAG00000013413) #26 Rbsn (ENSJJAG00000024360) #27 ENSJJAG00000023012 #28 Tmcc1 (ENSJJAG00000019999) ENSJJAG00000020659 Plxnd1 (ENSJJAG00000014069) ENSJJAG00000014828 Rho (ENSJJAG00000022285) Ift122 (ENSJJAG00000020288) ENSJJAG00000016695 ENSJJAG00000021233 Cand2 (ENSJJAG00000018247) Kangaroo rat MODERN SPECIES 331 Klf15 (ENSDORG00000024290) ENSDORG00000014835 Slc41a3 (ENSDORG00000014834) #7 Iqsec1 (ENSDORG00000014831) #8 Nup210 (ENSDORG00000013458) #10 Hdac11 (ENSDORG00000009690) #11 Fbln2 (ENSDORG00000009692) #12 Wnt7a (ENSDORG00000028810) #13 ENSDORG00000028796 #14 ENSDORG00000025656 #16 Tmem43 (ENSDORG00000002103) #17 Xpc (ENSDORG00000002105) #18 ENSDORG00000006894 #19 Slc6a6 (ENSDORG00000011320) #20 Grip2 (ENSDORG00000014464) #21 Ccdc174 (ENSDORG00000007328) #22 4930590J08Rik (ENSDORG00000007329) #23 Fgd5 (ENSDORG00000016297) #24 Nr2c2 (ENSDORG00000007038) #25 Mrps25 (ENSDORG00000026838) #26 Rbsn (ENSDORG00000009815) #27 Tmcc1 (ENSDORG00000026595) Plxnd1 (ENSDORG00000000912) ENSDORG00000026967 Rho (ENSDORG00000000911) Ift122 (ENSDORG00000000906) ENSDORG00000000902 Rpl32 (ENSDORG00000008426) Cand2 (ENSDORG00000008424) ENSDORG00000023579 Raf1 (ENSDORG00000015622) Rodentia_A ANCESTRAL SPECIES 27 ENSGT00940000156977 ENSGT00940000153110.A ENSGT00940000162216 ENSGT00390000015136 ENSGT00940000161154 ENSGT00390000004778 ENSGT01030000234553.b.b.d.c.b.a.a.a #14 ENSGT01030000234553.b.b.d.c.b.b ##14 ENSGT01030000234553.b.b.d.c.b.a.a.b.b ##14 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000160900 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Sciuridae ANCESTRAL SPECIES 41 ENSGT00940000156977 ENSGT00940000153110.A ENSGT00940000162216 ENSGT00390000015136 ENSGT00940000161154 ENSGT00390000004778 ENSGT01030000234553.b.b.d.c.b.a.a.a.f #14 ENSGT01030000234553.b.b.d.c.b.a.a.a.e.b #14 ENSGT01030000234553.b.b.d.c.b.a.a.b.b ##14 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000160900 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Marmotini ANCESTRAL SPECIES 49 ENSGT00940000160913 ENSGT00940000156977 ENSGT00940000153110.A ENSGT00940000162216 ENSGT00390000015136 ENSGT00940000161154 ENSGT00390000004778 ENSGT01030000234553.b.b.d.c.b.a.a.a.f #14 ENSGT01030000234553.b.b.d.c.b.a.a.b.b ##14 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000160900 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Alpin marmot MODERN SPECIES 40 ENSMMMG00000011998 ENSMMMG00000011933 ZXDC (ENSMMMG00000011920) UROC1 (ENSMMMG00000011851) ENSMMMG00000011845 ENSMMMG00000011834 #14 ENSMMMG00000011832 #14 ENSMMMG00000011805 ##14 ENSMMMG00000011798 ##14 ENSMMMG00000011790 #16 TMEM43 (ENSMMMG00000011785) #17 XPC (ENSMMMG00000011669) #18 LSM3 (ENSMMMG00000011665) #19 SLC6A6 (ENSMMMG00000011651) #20 GRIP2 (ENSMMMG00000011620) #21 CCDC174 (ENSMMMG00000011603) #22 C3orf20 (ENSMMMG00000011543) #23 FGD5 (ENSMMMG00000011473) #24 NR2C2 (ENSMMMG00000011464) #25 MRPS25 (ENSMMMG00000011452) #26 RBSN (ENSMMMG00000011435) #27 TRH (ENSMMMG00000011424) #28 TMCC1 (ENSMMMG00000011365) ENSMMMG00000011319 ENSMMMG00000011299 RHO (ENSMMMG00000011272) IFT122 (ENSMMMG00000011068) MBD4 (ENSMMMG00000011043) EFCAB12 (ENSMMMG00000011023) ENSMMMG00000010997 ENSMMMG00000010993 Marmotini_b ANCESTRAL SPECIES 62 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000160900 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Arctic ground squirrel MODERN SPECIES 23 ENSUPAG00010000974 CHCHD4 (ENSUPAG00010000962) #16 TMEM43 (ENSUPAG00010000942) #17 XPC (ENSUPAG00010000908) #18 LSM3 (ENSUPAG00010000896) #19 SLC6A6 (ENSUPAG00010000886) #20 GRIP2 (ENSUPAG00010000760) #21 CCDC174 (ENSUPAG00010000716) #22 C3orf20 (ENSUPAG00010000647) #23 FGD5 (ENSUPAG00010000616) #24 NR2C2 (ENSUPAG00010000576) #25 MRPS25 (ENSUPAG00010000567) #26 RBSN (ENSUPAG00010000555) #27 TRH (ENSUPAG00010000545) #28 TMCC1 (ENSUPAG00010000491) PLXND1 (ENSUPAG00010000023) H1-8 (ENSUPAG00010023069) RHO (ENSUPAG00010023066) IFT122 (ENSUPAG00010023058) ENSUPAG00010023053 ENSUPAG00010023052 EFCAB12 (ENSUPAG00010023049) ENSUPAG00010023046 Squirrel MODERN SPECIES 202 CHCHD4 (ENSSTOG00000006836) #16 TMEM43 (ENSSTOG00000029232) #17 XPC (ENSSTOG00000033914) #18 LSM3 (ENSSTOG00000006842) #19 ENSSTOG00000023459 #20 GRIP2 (ENSSTOG00000000954) #21 CCDC174 (ENSSTOG00000027414) #22 C3orf20 (ENSSTOG00000002907) #23 FGD5 (ENSSTOG00000005202) #24 NR2C2 (ENSSTOG00000005250) #25 MRPS25 (ENSSTOG00000030962) #26 RBSN (ENSSTOG00000022986) #27 TRH (ENSSTOG00000026247) #28 TMCC1 (ENSSTOG00000019869) PLXND1 (ENSSTOG00000024621) RHO (ENSSTOG00000028352) IFT122 (ENSSTOG00000004353) MBD4 (ENSSTOG00000020663) ENSSTOG00000026505 CAND2 (ENSSTOG00000023136) RAF1 (ENSSTOG00000025146) MKRN2 (ENSSTOG00000010520) Eurasian red squirrel MODERN SPECIES 10 ENSSVLG00005019581 ENSSVLG00005019649 ##14 ENSSVLG00005019723 ENSSVLG00005019757 ##14 ENSSVLG00005019823 ##14 ENSSVLG00005019882 ##14 ENSSVLG00005019920 ##14 ENSSVLG00005019961 ENSSVLG00005020003 ##14 CHCHD4 (ENSSVLG00005020063) #16 TMEM43 (ENSSVLG00005020105) #17 XPC (ENSSVLG00005020171) #18 LSM3 (ENSSVLG00005020441) #19 SLC6A6 (ENSSVLG00005020466) #20 GRIP2 (ENSSVLG00005020528) #21 CCDC174 (ENSSVLG00005020744) #22 C3orf20 (ENSSVLG00005020807) #23 FGD5 (ENSSVLG00005017167) #24 NR2C2 (ENSSVLG00005017625) #25 MRPS25 (ENSSVLG00005017966) #26 RBSN (ENSSVLG00005018031) #27 TRH (ENSSVLG00005018181) #28 ENSSVLG00005018231 TMCC1 (ENSSVLG00005018250) PLXND1 (ENSSVLG00005018384) ENSSVLG00005018771 RHO (ENSSVLG00005018827) IFT122 (ENSSVLG00005018941) MBD4 (ENSSVLG00005019308) EFCAB12 (ENSSVLG00005019404) ENSSVLG00005019450 Hystricomorpha ANCESTRAL SPECIES 48 ENSGT00940000156836 ENSGT00390000011364 ENSGT00390000017131 ENSGT00730000111323 ENSGT01050000244824.F ENSGT00390000016807 ENSGT01050000244850.A.b ENSGT00390000000903.b ENSGT00940000159178 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00940000155189 ENSGT00940000160900 ENSGT00390000016951 #28 ENSGT01020000230394.e.b.a ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b Hystricomorpha_a ANCESTRAL SPECIES 6 ENSGT00940000156836 ENSGT00390000011364 ENSGT00390000017131 ENSGT00730000111323 ENSGT01050000244824.F ENSGT00390000016807 ENSGT01050000244850.A.b ENSGT00390000000903.b ENSGT00940000159178 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b ENSGT00390000017530 ENSGT00940000156084 ENSGT00950000183077.a.b Hystricomorpha_b ANCESTRAL SPECIES 2 ENSGT00940000156836 ENSGT00390000011364 ENSGT00390000017131 ENSGT00730000111323 ENSGT01050000244824.F ENSGT00390000016807 ENSGT01050000244850.A.b ENSGT00390000000903.b ENSGT00940000159178 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00940000153973.c.a.a ENSGT00390000017740.a.b ENSGT00390000017530 ENSGT00940000156084 ENSGT00950000183077.a.b Long-tailed chinchilla MODERN SPECIES 136 KBTBD12 (ENSCLAG00000006214) MGLL (ENSCLAG00000010527) ABTB1 (ENSCLAG00000010398) PODXL2 (ENSCLAG00000011183) MCM2 (ENSCLAG00000013539) TPRA1 (ENSCLAG00000015612) PLXNA1 (ENSCLAG00000007472) CHCHD6 (ENSCLAG00000011198) TXNRD3 (ENSCLAG00000010439) CHCHD4 (ENSCLAG00000015153) #16 TMEM43 (ENSCLAG00000014810) #17 XPC (ENSCLAG00000013400) #18 LSM3 (ENSCLAG00000015997) #19 SLC6A6 (ENSCLAG00000010187) #20 GRIP2 (ENSCLAG00000013538) #21 CCDC174 (ENSCLAG00000011014) #22 C3orf20 (ENSCLAG00000013841) #23 FGD5 (ENSCLAG00000011953) #24 NR2C2 (ENSCLAG00000011082) #25 MRPS25 (ENSCLAG00000008381) #26 RBSN (ENSCLAG00000011613) #27 TMCC1 (ENSCLAG00000014727) PLXND1 (ENSCLAG00000012627) RHO (ENSCLAG00000006233) IFT122 (ENSCLAG00000006170) MBD4 (ENSCLAG00000008974) ENSCLAG00000007426 CAND2 (ENSCLAG00000007541) TMEM40 (ENSCLAG00000009668) RAF1 (ENSCLAG00000010316) MKRN2 (ENSCLAG00000008755) Guinea pig MODERN SPECIES 109 ENSCPOG00000036087 PLXNA1 (ENSCPOG00000014801) CHCHD6 (ENSCPOG00000035116) TXNRD3 (ENSCPOG00000007296) CHCHD4 (ENSCPOG00000034611) #16 TMEM43 (ENSCPOG00000024656) #17 XPC (ENSCPOG00000006655) #18 LSM3 (ENSCPOG00000034071) #19 SLC6A6 (ENSCPOG00000014967) #20 GRIP2 (ENSCPOG00000021047) #21 CCDC174 (ENSCPOG00000039402) #22 C3orf20 (ENSCPOG00000006783) #23 FGD5 (ENSCPOG00000013157) #24 NR2C2 (ENSCPOG00000001512) #25 MRPS25 (ENSCPOG00000020398) #26 RBSN (ENSCPOG00000003200) #27 TMCC1 (ENSCPOG00000009299) PLXND1 (ENSCPOG00000004989) RHO (ENSCPOG00000004984) IFT122 (ENSCPOG00000004975) ENSCPOG00000004970 RPL32 (ENSCPOG00000019967) CAND2 (ENSCPOG00000023286) TMEM40 (ENSCPOG00000025632) RAF1 (ENSCPOG00000001210) MKRN2 (ENSCPOG00000001208) Lagomorpha ANCESTRAL SPECIES 105 ENSGT01030000234553.b.b.d.d ##14 ENSGT00390000013132 #16 ENSGT00390000009671 #17 ENSGT00390000005194 #18 ENSGT00390000013951 #19 ENSGT00940000154583 #20 ENSGT00940000155615 #21 ENSGT00440000033958 #22 ENSGT00940000153655.B #23 ENSGT00940000157922 #24 ENSGT00940000158393 #25 ENSGT00640000091558 #26 ENSGT00390000007159 #27 ENSGT00390000016951 #28 ENSGT00940000155189 ENSGT01020000230394.e.b.a ENSGT00940000175447 ENSGT01030000234549.a.a.a.a.a.b.b ENSGT00390000001016.b ENSGT00530000063687.a ENSGT00390000014874 ENSGT00940000153973.c.a.b.b ENSGT00390000017740.a.b Rabbit MODERN SPECIES 20 ORYCUNV1R1532 (ENSOCUG00000031321) #14 ORYCUNV1R1621 (ENSOCUG00000028079) ##14 ORYCUNV1R1511 (ENSOCUG00000032956) #14 ORYCUNV1R1540 (ENSOCUG00000032812) #14 XPC (ENSOCUG00000011079) #18 ORYCUNV1R1507 (ENSOCUG00000031825) #14 ORYCUNV1R1638 (ENSOCUG00000035671) ##14 ORYCUNV1R1541 (ENSOCUG00000031125) ##14 ORYCUNV1R1632 (ENSOCUG00000033938) ##14 ORYCUNV1R1524 (ENSOCUG00000027158) ##14 CHCHD4 (ENSOCUG00000023806) #16 TMEM43 (ENSOCUG00000011074) #17 ENSOCUG00000011088 #19 SLC6A6 (ENSOCUG00000001144) #20 GRIP2 (ENSOCUG00000001145) #21 CCDC174 (ENSOCUG00000008451) #22 ENSOCUG00000039627 #23 ENSOCUG00000015577 #23 ENSOCUG00000025023 FGD5 (ENSOCUG00000006961) #24 NR2C2 (ENSOCUG00000006975) #25 MRPS25 (ENSOCUG00000006984) #26 RBSN (ENSOCUG00000006988) #27 TRH (ENSOCUG00000006337) #28 TMCC1 (ENSOCUG00000013071) PLXND1 (ENSOCUG00000013049) ENSOCUG00000029379 RHO (ENSOCUG00000013036) IFT122 (ENSOCUG00000013015) MBD4 (ENSOCUG00000013006) ENSOCUG00000012999 Pika MODERN SPECIES 1101 SLC6A6 (ENSOPRG00000005084) #20 GRIP2 (ENSOPRG00000005104) #21 CCDC174 (ENSOPRG00000005155) #22