Theria	ANCESTRAL SPECIES	28	ENSGT00940000161154	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00990000205522	ENSGT00940000153110.A	ENSGT00940000164258	ENSGT00390000015136	ENSGT00940000165132	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973	ENSGT00390000017740.a.b #7
Eutheria	ANCESTRAL SPECIES	14	ENSGT00950000183014.f.b.a.b	ENSGT00390000007219	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b	ENSGT00940000153973.c.a.a
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874
Primates	ANCESTRAL SPECIES	1	ENSGT00390000007219	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874
Haplorrhini	ANCESTRAL SPECIES	52					ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00390000017740.a.b #7	ENSGT00940000158890.q #8	ENSGT00940000153973.c.a.b.a.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.p #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00730000111536	ENSGT00390000018439
Cebidae	ANCESTRAL SPECIES	14	ENSGT00390000017740.a.b #7	ENSGT00940000158890.q #8	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.p #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00730000111536	ENSGT00390000018439
Marmoset	MODERN SPECIES	6	CAND2 (ENSCJAG00000016770) #7	ENSCJAG00000061647 #8	IQSEC1 (ENSCJAG00000016781) #9	NUP210 (ENSCJAG00000016795) #10	HDAC11 (ENSCJAG00000016844) #11	FBLN2 (ENSCJAG00000016873) #12	WNT7A (ENSCJAG00000040771) #13	TMEM43 (ENSCJAG00000016924) #14	ENSCJAG00000072125 #15	ENSCJAG00000087072 #16	XPC (ENSCJAG00000016952) #17	ENSCJAG00000042664 #18	ENSCJAG00000079599 #19	SLC6A6 (ENSCJAG00000016992) #20	GRIP2 (ENSCJAG00000017014) #21	CCDC174 (ENSCJAG00000017045) #22	C3orf20 (ENSCJAG00000017083) #23	FGD5 (ENSCJAG00000017099) #24	NR2C2 (ENSCJAG00000017131) #25	ENSCJAG00000058001 #26	MRPS25 (ENSCJAG00000017160) #27	RBSN (ENSCJAG00000017163) #28	TRH (ENSCJAG00000047087) #29	ENSCJAG00000021040 #30	TMCC1 (ENSCJAG00000017178) #31	PLXND1 (ENSCJAG00000005429) #32	ENSCJAG00000017209 #33	RHO (ENSCJAG00000017195) #34	ENSCJAG00000076224 #35	ENSCJAG00000087235 #36	IFT122 (ENSCJAG00000017213) #37
Cebidae_a	ANCESTRAL SPECIES	47	ENSGT00390000017530	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.p #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00730000111536	ENSGT00390000018439
Capuchin	MODERN SPECIES	332					NUP210 (ENSCCAG00000023331) #10	HDAC11 (ENSCCAG00000036510) #11	FBLN2 (ENSCCAG00000020396) #12	WNT7A (ENSCCAG00000031285) #13	CHCHD4 (ENSCCAG00000018934) #16	TMEM43 (ENSCCAG00000021194) #14	XPC (ENSCCAG00000021946) #17	ENSCCAG00000036499 #18	SLC6A6 (ENSCCAG00000024571) #20	GRIP2 (ENSCCAG00000023870) #21	ENSCCAG00000021896	CCDC174 (ENSCCAG00000030530) #22	C3orf20 (ENSCCAG00000025317) #23	FGD5 (ENSCCAG00000034009) #24	NR2C2 (ENSCCAG00000028267) #25	MRPS25 (ENSCCAG00000029293) #27	RBSN (ENSCCAG00000015545) #28	TRH (ENSCCAG00000025977) #29	TMCC1 (ENSCCAG00000034223) #31	PLXND1 (ENSCCAG00000026590) #32	H1-8 (ENSCCAG00000028548) #36	RHO (ENSCCAG00000003711) #34	IFT122 (ENSCCAG00000034647) #37	MBD4 (ENSCCAG00000029796)	EFCAB12 (ENSCCAG00000037525)
Bolivian squirrel monkey	MODERN SPECIES	59	CAND2 (ENSSBOG00000030427) #7	ENSSBOG00000020027	IQSEC1 (ENSSBOG00000033593) #9	NUP210 (ENSSBOG00000030291) #10	HDAC11 (ENSSBOG00000030160) #11	FBLN2 (ENSSBOG00000033203) #12	WNT7A (ENSSBOG00000023765) #13	CHCHD4 (ENSSBOG00000023461) #16	TMEM43 (ENSSBOG00000022802) #14	XPC (ENSSBOG00000022446) #17	ENSSBOG00000024310 #18	SLC6A6 (ENSSBOG00000029944) #20	GRIP2 (ENSSBOG00000004102) #21	ENSSBOG00000029285	ENSSBOG00000024640	CCDC174 (ENSSBOG00000020532) #22	C3orf20 (ENSSBOG00000031678) #23	FGD5 (ENSSBOG00000035174) #24	NR2C2 (ENSSBOG00000024072) #25	ENSSBOG00000035105 #27	RBSN (ENSSBOG00000029767) #28	TRH (ENSSBOG00000032057) #29	TMCC1 (ENSSBOG00000032556) #31	PLXND1 (ENSSBOG00000025455) #32	H1-8 (ENSSBOG00000020996) #36	RHO (ENSSBOG00000020736) #34	IFT122 (ENSSBOG00000035867) #37	MBD4 (ENSSBOG00000016810)	EFCAB12 (ENSSBOG00000024520)	H1-10 (ENSSBOG00000019873)	HMCES (ENSSBOG00000023491)
Mas night monkey	MODERN SPECIES	321	RAF1 (ENSANAG00000031934)	TMEM40 (ENSANAG00000036821)	CAND2 (ENSANAG00000020366) #7	ENSANAG00000020589	IQSEC1 (ENSANAG00000028368) #9	NUP210 (ENSANAG00000036448) #10	HDAC11 (ENSANAG00000035737) #11	FBLN2 (ENSANAG00000027135) #12	WNT7A (ENSANAG00000033071) #13	CHCHD4 (ENSANAG00000034814) #16	TMEM43 (ENSANAG00000036418) #14	XPC (ENSANAG00000021069) #17	LSM3 (ENSANAG00000034627) #18	SLC6A6 (ENSANAG00000025733) #20	GRIP2 (ENSANAG00000037475) #21	CCDC174 (ENSANAG00000036650) #22	C3orf20 (ENSANAG00000020657) #23	FGD5 (ENSANAG00000021931) #24	ENSANAG00000019989	NR2C2 (ENSANAG00000037853) #25	MRPS25 (ENSANAG00000036121) #27	RBSN (ENSANAG00000022849) #28	ENSANAG00000022989	TRH (ENSANAG00000024416) #29	TMCC1 (ENSANAG00000024697) #31	PLXND1 (ENSANAG00000037480) #32	ENSANAG00000026706 #36	RHO (ENSANAG00000032928) #34	IFT122 (ENSANAG00000033342) #37	MBD4 (ENSANAG00000005085)	EFCAB12 (ENSANAG00000028408)
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00910000147988	ENSGT00940000158523 #13	ENSGT00390000013132.q.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.a	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00910000147988	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.d #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583.i #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00730000111536
Hominidae	ANCESTRAL SPECIES	2	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.a	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00910000147988	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.d #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583.i #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00730000111536
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00910000147988	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.d #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583.i #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00940000155892	ENSGT00390000018500.b	ENSGT00950000182802.B.a.a.a.a.h.a.a.a.a	ENSGT00940000156679	ENSGT00390000017724.a.a	ENSGT00940000157248	ENSGT00940000156802	ENSGT00390000013823.a	ENSGT00950000182908.C
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000153309.c.a.e.b	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.d #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583.i #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00940000155892	ENSGT00390000018500.b	ENSGT00940000156679	ENSGT00390000017724.a.a	ENSGT00940000157248	ENSGT00940000156802	ENSGT00390000013823.a	ENSGT00950000182908.C	ENSGT00940000160808
Pan	ANCESTRAL SPECIES	2	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.d #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583.i #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00940000155892	ENSGT00390000018500.b	ENSGT00940000156679	ENSGT00390000017724.a.a	ENSGT00940000157248	ENSGT00940000156802	ENSGT00390000013823.a	ENSGT00950000182908.C	ENSGT00940000160808
Chimpanzee	MODERN SPECIES	16	CAND2 (ENSPTRG00000014637) #7	ENSPTRG00000050657	IQSEC1 (ENSPTRG00000014639) #9	ENSPTRG00000046540	NUP210 (ENSPTRG00000014640) #10	HDAC11 (ENSPTRG00000014641) #11	FBLN2 (ENSPTRG00000014642) #12	WNT7A (ENSPTRG00000046824) #13	CHCHD4 (ENSPTRG00000014647) #16	TMEM43 (ENSPTRG00000014648) #14	XPC (ENSPTRG00000014649) #17	LSM3 (ENSPTRG00000014650) #18	SLC6A6 (ENSPTRG00000014651) #20	GRIP2 (ENSPTRG00000047094) #21	ENSPTRG00000048798	CCDC174 (ENSPTRG00000014654) #22	C3H3orf20 (ENSPTRG00000014655) #23	FGD5 (ENSPTRG00000014656) #24	NR2C2 (ENSPTRG00000014657) #25	MRPS25 (ENSPTRG00000014658) #27	RBSN (ENSPTRG00000014659) #28	CAPN7 (ENSPTRG00000014661)	SH3BP5 (ENSPTRG00000014662)	ENSPTRG00000051176	METTL6 (ENSPTRG00000030297)	EAF1 (ENSPTRG00000014665)	COLQ (ENSPTRG00000030295)	HACL1 (ENSPTRG00000014667)	BTD (ENSPTRG00000014668)	ANKRD28 (ENSPTRG00000030292)	GALNT15 (ENSPTRG00000014670)
Bonobo	MODERN SPECIES	16	RPL32 (ENSPPAG00000008188)	IQSEC1 (ENSPPAG00000036448) #9	ENSPPAG00000028546	NUP210 (ENSPPAG00000037715) #10	HDAC11 (ENSPPAG00000037567) #11	FBLN2 (ENSPPAG00000015671) #12	WNT7A (ENSPPAG00000030187) #13	CHCHD4 (ENSPPAG00000032925) #16	TMEM43 (ENSPPAG00000000804) #14	XPC (ENSPPAG00000043453) #17	LSM3 (ENSPPAG00000034074) #18	ENSPPAG00000036305	SLC6A6 (ENSPPAG00000042007) #20	GRIP2 (ENSPPAG00000041847) #21	ENSPPAG00000033481	CCDC174 (ENSPPAG00000038422) #22	C3orf20 (ENSPPAG00000041311) #23	FGD5 (ENSPPAG00000025764) #24	ENSPPAG00000042214	NR2C2 (ENSPPAG00000023138) #25	MRPS25 (ENSPPAG00000039324) #27	RBSN (ENSPPAG00000038220) #28	CAPN7 (ENSPPAG00000032807)	SH3BP5 (ENSPPAG00000038360)	METTL6 (ENSPPAG00000039377)	EAF1 (ENSPPAG00000039271)	COLQ (ENSPPAG00000031635)	HACL1 (ENSPPAG00000042783)	BTD (ENSPPAG00000035833)	ANKRD28 (ENSPPAG00000041736)	GALNT15 (ENSPPAG00000039833)
Human	MODERN SPECIES	15	TMEM40 (ENSG00000088726)	CAND2 (ENSG00000144712) #7	ENSG00000289809	RPL32 (ENSG00000144713)	IQSEC1 (ENSG00000144711) #9	NUP210 (ENSG00000132182) #10	HDAC11 (ENSG00000163517) #11	FBLN2 (ENSG00000163520) #12	WNT7A (ENSG00000154764) #13	CHCHD4 (ENSG00000163528) #16	TMEM43 (ENSG00000170876) #14	XPC (ENSG00000154767) #17	LSM3 (ENSG00000170860) #18	SLC6A6 (ENSG00000131389) #20	GRIP2 (ENSG00000144596) #21	CCDC174 (ENSG00000154781) #22	C3orf20 (ENSG00000131379) #23	FGD5 (ENSG00000154783) #24	NR2C2 (ENSG00000177463) #25	MRPS25 (ENSG00000131368) #27	RBSN (ENSG00000131381) #28	CAPN7 (ENSG00000131375)	SH3BP5 (ENSG00000131370)	METTL6 (ENSG00000206562)	EAF1 (ENSG00000144597)	COLQ (ENSG00000206561)	HACL1 (ENSG00000131373)	BTD (ENSG00000169814)	ANKRD28 (ENSG00000206560)	GALNT15 (ENSG00000131386)	DPH3 (ENSG00000154813)
Gorilla	MODERN SPECIES	16	CAND2 (ENSGGOG00000001004) #7	RPL32 (ENSGGOG00000043568)	IQSEC1 (ENSGGOG00000001008) #9	NUP210 (ENSGGOG00000015096) #10	HDAC11 (ENSGGOG00000007735) #11	FBLN2 (ENSGGOG00000011561) #12	ENSGGOG00000042871	WNT7A (ENSGGOG00000012654) #13	CHCHD4 (ENSGGOG00000024077) #16	TMEM43 (ENSGGOG00000016577) #14	XPC (ENSGGOG00000009997) #17	LSM3 (ENSGGOG00000010006) #18	SLC6A6 (ENSGGOG00000013384) #20	GRIP2 (ENSGGOG00000002279) #21	ENSGGOG00000038061	CCDC174 (ENSGGOG00000001359) #22	C3orf20 (ENSGGOG00000001361) #23	FGD5 (ENSGGOG00000001365) #24	ENSGGOG00000044014 #25	MRPS25 (ENSGGOG00000011005) #27	RBSN (ENSGGOG00000012784) #28	CAPN7 (ENSGGOG00000025671)	SH3BP5 (ENSGGOG00000001667)	ENSGGOG00000023889	METTL6 (ENSGGOG00000024436)	EAF1 (ENSGGOG00000004453)	COLQ (ENSGGOG00000004457)	HACL1 (ENSGGOG00000010802)	BTD (ENSGGOG00000013932)	ANKRD28 (ENSGGOG00000009548)	GALNT15 (ENSGGOG00000009285)
Orangutan	MODERN SPECIES	16	RAF1 (ENSPPYG00000013388)	TMEM40 (ENSPPYG00000013389)	CAND2 (ENSPPYG00000013390) #7	ENSPPYG00000037343	IQSEC1 (ENSPPYG00000013393) #9	NUP210 (ENSPPYG00000013394) #10	HDAC11 (ENSPPYG00000013395) #11	FBLN2 (ENSPPYG00000013396) #12	WNT7A (ENSPPYG00000013397) #13	CHCHD4 (ENSPPYG00000025890) #16	TMEM43 (ENSPPYG00000013400) #14	XPC (ENSPPYG00000013401) #17	LSM3 (ENSPPYG00000013402) #18	SLC6A6 (ENSPPYG00000013403) #20	GRIP2 (ENSPPYG00000013404) #21	CCDC174 (ENSPPYG00000013405) #22	C3orf20 (ENSPPYG00000013406) #23	FGD5 (ENSPPYG00000013407) #24	NR2C2 (ENSPPYG00000013408) #25	MRPS25 (ENSPPYG00000032891) #27	RBSN (ENSPPYG00000013410) #28	TRH (ENSPPYG00000013411) #29	TMCC1 (ENSPPYG00000013412) #31	PLXND1 (ENSPPYG00000013413) #32	ENSPPYG00000013414	RHO (ENSPPYG00000013415) #34	IFT122 (ENSPPYG00000013416) #37	MBD4 (ENSPPYG00000013417)	EFCAB12 (ENSPPYG00000013418)	H1-10 (ENSPPYG00000013420)	HMCES (ENSPPYG00000013421)
Gibbon	MODERN SPECIES	13	TMEM40 (ENSNLEG00000004755)	CAND2 (ENSNLEG00000004774) #7	ENSNLEG00000035616	ENSNLEG00000004798	IQSEC1 (ENSNLEG00000004793) #9	NUP210 (ENSNLEG00000004799) #10	HDAC11 (ENSNLEG00000004853) #11	FBLN2 (ENSNLEG00000004881) #12	ENSNLEG00000004941 #13	CHCHD4 (ENSNLEG00000029809) #16	TMEM43 (ENSNLEG00000004956) #14	XPC (ENSNLEG00000005000) #17	LSM3 (ENSNLEG00000005079) #18	SLC6A6 (ENSNLEG00000005084) #20	GRIP2 (ENSNLEG00000005114) #21	CCDC174 (ENSNLEG00000005142) #22	C3orf20 (ENSNLEG00000005161) #23	FGD5 (ENSNLEG00000005177) #24	NR2C2 (ENSNLEG00000005193) #25	MRPS25 (ENSNLEG00000031537) #27	RBSN (ENSNLEG00000005222) #28	TRH (ENSNLEG00000005245) #29	TMCC1 (ENSNLEG00000005249) #31	PLXND1 (ENSNLEG00000005261) #32	H1-8 (ENSNLEG00000005285) #36	RHO (ENSNLEG00000005288) #34	IFT122 (ENSNLEG00000005298) #37	MBD4 (ENSNLEG00000005337)	EFCAB12 (ENSNLEG00000005355)	H1-10 (ENSNLEG00000019298)	HMCES (ENSNLEG00000014523)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.a	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00910000147988	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00910000147988	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a
Vervet Monkey	MODERN SPECIES	14	MKRN2 (ENSCSAG00000009754)	RAF1 (ENSCSAG00000009721)	TMEM40 (ENSCSAG00000009604)	CAND2 (ENSCSAG00000009557) #7	RPL32 (ENSCSAG00000009485)	IQSEC1 (ENSCSAG00000009482) #9	NUP210 (ENSCSAG00000009474) #10	HDAC11 (ENSCSAG00000009462) #11	FBLN2 (ENSCSAG00000009449) #12	WNT7A (ENSCSAG00000009439) #13	CHCHD4 (ENSCSAG00000009431) #16	TMEM43 (ENSCSAG00000009426) #14	XPC (ENSCSAG00000009411) #17	SLC6A6 (ENSCSAG00000009391) #20	GRIP2 (ENSCSAG00000009353) #21	CCDC174 (ENSCSAG00000009294) #22	C3orf20 (ENSCSAG00000009277) #23	FGD5 (ENSCSAG00000009224) #24	NR2C2 (ENSCSAG00000009209) #25	MRPS25 (ENSCSAG00000009193) #27	RBSN (ENSCSAG00000009184) #28	TRH (ENSCSAG00000009163) #29	TMCC1 (ENSCSAG00000009154) #31	PLXND1 (ENSCSAG00000009144) #32	H1-8 (ENSCSAG00000009112) #36	RHO (ENSCSAG00000009088) #34	IFT122 (ENSCSAG00000009059) #37	MBD4 (ENSCSAG00000009037)	EFCAB12 (ENSCSAG00000009011)	H1-10 (ENSCSAG00000018811)	HMCES (ENSCSAG00000008979)
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000153973.c.a.a.e.b	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00910000147988	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a
Macaca	ANCESTRAL SPECIES	5	ENSGT00390000017530	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.b.a.a	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00910000148131	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00390000017530	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.a.e.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.r #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874
Crab-eating macaque	MODERN SPECIES	11	TMEM40 (ENSMFAG00000039365)	CAND2 (ENSMFAG00000044298) #7	ENSMFAG00000045190	IQSEC1 (ENSMFAG00000043873) #9	NUP210 (ENSMFAG00000044461) #10	ENSMFAG00000058794	HDAC11 (ENSMFAG00000036363) #11	FBLN2 (ENSMFAG00000003835) #12	WNT7A (ENSMFAG00000044809) #13	ENSMFAG00000044351 #16	TMEM43 (ENSMFAG00000047872) #14	XPC (ENSMFAG00000031847) #17	LSM3 (ENSMFAG00000063615) #18	SLC6A6 (ENSMFAG00000038570) #20	GRIP2 (ENSMFAG00000035973) #21	CCDC174 (ENSMFAG00000042348) #22	C3orf20 (ENSMFAG00000029993) #23	FGD5 (ENSMFAG00000045664) #24	ENSMFAG00000051869	NR2C2 (ENSMFAG00000045119) #25	MRPS25 (ENSMFAG00000035383) #27	RBSN (ENSMFAG00000052478) #28	TRH (ENSMFAG00000042203) #29	TMCC1 (ENSMFAG00000045092) #31	PLXND1 (ENSMFAG00000000589) #32	ENSMFAG00000056765	ENSMFAG00000017755	RHO (ENSMFAG00000004044) #34	IFT122 (ENSMFAG00000030257) #37	ENSMFAG00000040136	HMCES (ENSMFAG00000032291)
Rhesus	MODERN SPECIES	11	RAF1 (ENSMMUG00000007450)	TMEM40 (ENSMMUG00000010276)	CAND2 (ENSMMUG00000001339) #7	RPL32 (ENSMMUG00000001340)	IQSEC1 (ENSMMUG00000001342) #9	NUP210 (ENSMMUG00000015979) #10	ENSMMUG00000056487	HDAC11 (ENSMMUG00000001369) #11	FBLN2 (ENSMMUG00000017659) #12	WNT7A (ENSMMUG00000018445) #13	XPC (ENSMMUG00000023125) #17	TMEM43 (ENSMMUG00000023124) #14	SLC6A6 (ENSMMUG00000006340) #20	GRIP2 (ENSMMUG00000006342) #21	ENSMMUG00000062011	CCDC174 (ENSMMUG00000044822) #22	C2H3orf20 (ENSMMUG00000014780) #23	FGD5 (ENSMMUG00000018446) #24	NR2C2 (ENSMMUG00000005156) #25	MRPS25 (ENSMMUG00000064556) #27	RBSN (ENSMMUG00000005158) #28	TRH (ENSMMUG00000046670) #29	TMCC1 (ENSMMUG00000016793) #31	PLXND1 (ENSMMUG00000012737) #32	H1-8 (ENSMMUG00000012736) #36	RHO (ENSMMUG00000055315) #34	IFT122 (ENSMMUG00000012727) #37	ENSMMUG00000062379	MBD4 (ENSMMUG00000012723)	EFCAB12 (ENSMMUG00000012721)	ENSMMUG00000063541
Pig-tailed macaque	MODERN SPECIES	546	CAND2 (ENSMNEG00000044168) #7	RPL32 (ENSMNEG00000030893)	IQSEC1 (ENSMNEG00000042270) #9	ENSMNEG00000029455	NUP210 (ENSMNEG00000041495) #10	HDAC11 (ENSMNEG00000040546) #11	FBLN2 (ENSMNEG00000035537) #12	WNT7A (ENSMNEG00000037464) #13	ENSMNEG00000040402 #16	TMEM43 (ENSMNEG00000032802) #14	XPC (ENSMNEG00000038400) #17	ENSMNEG00000043632 #18	SLC6A6 (ENSMNEG00000040859) #20	GRIP2 (ENSMNEG00000044173) #21	ENSMNEG00000008483	CCDC174 (ENSMNEG00000042119) #22	C3orf20 (ENSMNEG00000041322) #23	FGD5 (ENSMNEG00000029420) #24	ENSMNEG00000006121	NR2C2 (ENSMNEG00000030133) #25	MRPS25 (ENSMNEG00000034531) #27	RBSN (ENSMNEG00000044914) #28	TRH (ENSMNEG00000030919) #29	TMCC1 (ENSMNEG00000040170) #31	PLXND1 (ENSMNEG00000036132) #32	H1-8 (ENSMNEG00000045142) #36	RHO (ENSMNEG00000038092) #34	IFT122 (ENSMNEG00000041458) #37	MBD4 (ENSMNEG00000029752)	EFCAB12 (ENSMNEG00000030732)	H1-10 (ENSMNEG00000025518)
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000153973.c.a.a.d	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00910000147988	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00730000111536	ENSGT00390000018439
Olive baboon	MODERN SPECIES	11	TMEM40 (ENSPANG00000014208)	CAND2 (ENSPANG00000018464) #7	ENSPANG00000007693	IQSEC1 (ENSPANG00000006877) #9	NUP210 (ENSPANG00000006878) #10	HDAC11 (ENSPANG00000024163) #11	ENSPANG00000047403 #12	ENSPANG00000007694 #12	WNT7A (ENSPANG00000046909) #13	CHCHD4 (ENSPANG00000025946) #16	TMEM43 (ENSPANG00000012906) #14	XPC (ENSPANG00000004175) #17	LSM3 (ENSPANG00000009378) #18	SLC6A6 (ENSPANG00000009556) #20	GRIP2 (ENSPANG00000010990) #21	CCDC174 (ENSPANG00000021119) #22	C3orf20 (ENSPANG00000018820) #23	FGD5 (ENSPANG00000012066) #24	NR2C2 (ENSPANG00000005929) #25	MRPS25 (ENSPANG00000029339) #27	RBSN (ENSPANG00000016555) #28	TRH (ENSPANG00000009555) #29	TMCC1 (ENSPANG00000022860) #31	PLXND1 (ENSPANG00000005560) #32	H1-8 (ENSPANG00000017383) #36	RHO (ENSPANG00000008230) #34	IFT122 (ENSPANG00000006164) #37	MBD4 (ENSPANG00000015047)	H1-10 (ENSPANG00000018283)	HMCES (ENSPANG00000012065)	COPG1 (ENSPANG00000018819)
Cercopithecinae_d	ANCESTRAL SPECIES	12	ENSGT00390000017740.a.b #7	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00910000147988	ENSGT00940000158523 #13	ENSGT00390000013132.q.a.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00730000111536	ENSGT00390000018439
Sooty mangabey	MODERN SPECIES	650	TMEM40 (ENSCATG00000027847)	CAND2 (ENSCATG00000038720) #7	RPL32 (ENSCATG00000038198)	IQSEC1 (ENSCATG00000037864) #9	NUP210 (ENSCATG00000035260) #10	HDAC11 (ENSCATG00000026123) #11	FBLN2 (ENSCATG00000038061) #12	ENSCATG00000033105	WNT7A (ENSCATG00000033711) #13	TMEM43 (ENSCATG00000038308) #14	XPC (ENSCATG00000036725) #17	ENSCATG00000039421 #18	SLC6A6 (ENSCATG00000027535) #20	GRIP2 (ENSCATG00000030249) #21	ENSCATG00000022779	CCDC174 (ENSCATG00000029674) #22	C3orf20 (ENSCATG00000037971) #23	FGD5 (ENSCATG00000034854) #24	NR2C2 (ENSCATG00000040182) #25	MRPS25 (ENSCATG00000042651) #27	RBSN (ENSCATG00000029332) #28	TRH (ENSCATG00000030883) #29	TMCC1 (ENSCATG00000017209) #31	PLXND1 (ENSCATG00000041419) #32	H1-8 (ENSCATG00000040635) #36	RHO (ENSCATG00000038589) #34	IFT122 (ENSCATG00000017582) #37	MBD4 (ENSCATG00000035211)	EFCAB12 (ENSCATG00000038259)	H1-10 (ENSCATG00000002340)	HMCES (ENSCATG00000040383)
Drill	MODERN SPECIES	874	TMEM40 (ENSMLEG00000039986)	CAND2 (ENSMLEG00000034596) #7	RPL32 (ENSMLEG00000033655)	IQSEC1 (ENSMLEG00000035708) #9	NUP210 (ENSMLEG00000038717) #10	HDAC11 (ENSMLEG00000038310) #11	FBLN2 (ENSMLEG00000040866) #12	WNT7A (ENSMLEG00000042427) #13	ENSMLEG00000031201 #16	TMEM43 (ENSMLEG00000035818) #14	XPC (ENSMLEG00000041682) #17	LSM3 (ENSMLEG00000036162) #18	SLC6A6 (ENSMLEG00000040687) #20	GRIP2 (ENSMLEG00000029206) #21	ENSMLEG00000026453	CCDC174 (ENSMLEG00000029107) #22	C3orf20 (ENSMLEG00000028837) #23	FGD5 (ENSMLEG00000035795) #24	NR2C2 (ENSMLEG00000044042) #25	MRPS25 (ENSMLEG00000031574) #27	RBSN (ENSMLEG00000041788) #28	TRH (ENSMLEG00000022774) #29	ENSMLEG00000036386 #31
Rhinopithecus	ANCESTRAL SPECIES	35	ENSGT00390000012433.a.a.b	ENSGT00390000012433.a.b	ENSGT00940000160852	ENSGT00940000159121	ENSGT00940000162133	ENSGT00940000159901	ENSGT00390000002849.r	ENSGT00510000047486	ENSGT00940000159923	ENSGT00390000018302	ENSGT00940000158362	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00910000146921	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00730000111536	ENSGT00390000018439
Golden snub-nosed monkey	MODERN SPECIES	2280															ENSRROG00000042275	CCDC174 (ENSRROG00000031345) #22	C3orf20 (ENSRROG00000044103) #23	FGD5 (ENSRROG00000031500) #24	NR2C2 (ENSRROG00000041550) #25	MRPS25 (ENSRROG00000034718) #27	RBSN (ENSRROG00000015856) #28	TRH (ENSRROG00000030136) #29	ENSRROG00000044977	TMCC1 (ENSRROG00000027034) #31	PLXND1 (ENSRROG00000002091) #32	H1-8 (ENSRROG00000037123) #36	RHO (ENSRROG00000033776) #34	IFT122 (ENSRROG00000044243) #37	MBD4 (ENSRROG00000029136)	EFCAB12 (ENSRROG00000039253)
Black snub-nosed monkey	MODERN SPECIES	1271						HDAC11 (ENSRBIG00000030119) #11	FBLN2 (ENSRBIG00000037929) #12	WNT7A (ENSRBIG00000043591) #13	ENSRBIG00000029034 #16	TMEM43 (ENSRBIG00000032236) #14	XPC (ENSRBIG00000027884) #17	ENSRBIG00000034399 #18	SLC6A6 (ENSRBIG00000029514) #20	GRIP2 (ENSRBIG00000040208) #21	ENSRBIG00000037898	CCDC174 (ENSRBIG00000036299) #22	LRRC4 (ENSRBIG00000001277)	ENSRBIG00000028651	LEP (ENSRBIG00000043909)	RBM28 (ENSRBIG00000033990)	PRRT4 (ENSRBIG00000043786)	IMPDH1 (ENSRBIG00000030944)	HILPDA (ENSRBIG00000027583)	GARIN1A (ENSRBIG00000039139)	GARIN1B (ENSRBIG00000030558)	CALU (ENSRBIG00000032938)	OPN1SW (ENSRBIG00000037951) ##34	CCDC136 (ENSRBIG00000044440)	FLNC (ENSRBIG00000026980)	ATP6V1F (ENSRBIG00000042625)	ATP6V1FNB (ENSRBIG00000008769)
Tarsier	MODERN SPECIES	5178															GRIP2 (ENSTSYG00000007847) #21	CCDC174 (ENSTSYG00000008623) #22	C3orf20 (ENSTSYG00000012522) #23
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Bushbaby	MODERN SPECIES	216	ACAD9 (ENSOGAG00000013506)	IQSEC1 (ENSOGAG00000013504) #9	NUP210 (ENSOGAG00000001970) #10	HDAC11 (ENSOGAG00000007254) #11	FBLN2 (ENSOGAG00000007260) #12	ENSOGAG00000024558	WNT7A (ENSOGAG00000031005) #13	ENSOGAG00000029241	ENSOGAG00000031349	ENSOGAG00000002784 #16	TMEM43 (ENSOGAG00000007653) #14	XPC (ENSOGAG00000024108) #17	ENSOGAG00000007659 #18	SLC6A6 (ENSOGAG00000002891) #20	GRIP2 (ENSOGAG00000002892) #21	CCDC174 (ENSOGAG00000013264) #22	C3orf20 (ENSOGAG00000013270) #23	FGD5 (ENSOGAG00000013279) #24	NR2C2 (ENSOGAG00000014038) #25	MRPS25 (ENSOGAG00000014041) #27	RBSN (ENSOGAG00000014042) #28	TRH (ENSOGAG00000017199) #29	ENSOGAG00000031381	TMCC1 (ENSOGAG00000010283) #31	ENSOGAG00000032612	PLXND1 (ENSOGAG00000010266) #32	RHO (ENSOGAG00000010259) #34	IFT122 (ENSOGAG00000010245) #37	MBD4 (ENSOGAG00000010236)	ENSOGAG00000010234	RPL32 (ENSOGAG00000028498)
Lemuriformes	ANCESTRAL SPECIES	113													ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23
Lemuriformes_a	ANCESTRAL SPECIES	275													ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23
Greater bamboo lemur	MODERN SPECIES	258																CCDC174 (ENSPSMG00000018031) #22
Coquerels sifaka	MODERN SPECIES	748														SLC6A6 (ENSPCOG00000014886) #20	GRIP2 (ENSPCOG00000015711) #21	CCDC174 (ENSPCOG00000014779) #22	C3orf20 (ENSPCOG00000016668) #23
Euarchontoglires_A	ANCESTRAL SPECIES	2				ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Tree shrew	MODERN SPECIES	4227																ENSTBEG00000014177 #22	ENSTBEG00000014372 #23
Glires	ANCESTRAL SPECIES	2	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.b	ENSGT01030000234553.b.b.d.c.b.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Lagomorpha	ANCESTRAL SPECIES	105									ENSGT01030000234553.b.b.d.d	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b	ENSGT00390000017740.a.b #7
Rabbit	MODERN SPECIES	20	ORYCUNV1R1532 (ENSOCUG00000031321)	ORYCUNV1R1621 (ENSOCUG00000028079)	ORYCUNV1R1511 (ENSOCUG00000032956)	ORYCUNV1R1540 (ENSOCUG00000032812)	XPC (ENSOCUG00000011079) #17	ORYCUNV1R1507 (ENSOCUG00000031825)	ORYCUNV1R1638 (ENSOCUG00000035671)	ORYCUNV1R1541 (ENSOCUG00000031125)	ORYCUNV1R1632 (ENSOCUG00000033938)	ORYCUNV1R1524 (ENSOCUG00000027158)	CHCHD4 (ENSOCUG00000023806) #16	TMEM43 (ENSOCUG00000011074) #14	ENSOCUG00000011088 #18	SLC6A6 (ENSOCUG00000001144) #20	GRIP2 (ENSOCUG00000001145) #21	CCDC174 (ENSOCUG00000008451) #22	ENSOCUG00000039627 #23	ENSOCUG00000015577 #23	ENSOCUG00000025023 #30	FGD5 (ENSOCUG00000006961) #24	NR2C2 (ENSOCUG00000006975) #25	MRPS25 (ENSOCUG00000006984) #27	RBSN (ENSOCUG00000006988) #28	TRH (ENSOCUG00000006337) #29	TMCC1 (ENSOCUG00000013071) #31	PLXND1 (ENSOCUG00000013049) #32	ENSOCUG00000029379	RHO (ENSOCUG00000013036) #34	IFT122 (ENSOCUG00000013015) #37	MBD4 (ENSOCUG00000013006)	ENSOCUG00000012999
Pika	MODERN SPECIES	1101														SLC6A6 (ENSOPRG00000005084) #20	GRIP2 (ENSOPRG00000005104) #21	CCDC174 (ENSOPRG00000005155) #22
Rodentia	ANCESTRAL SPECIES	2	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.b	ENSGT01030000234553.b.b.d.c.b.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.b.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.a.a.a	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.a.a.a.b	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.a	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Muroidea	ANCESTRAL SPECIES	37	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.a.a.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00440000035348.l
Cricetidae	DUPLICATION
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958.a #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00440000035348.l
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958.a #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00940000159882
Chinese hamster chok1gshd	MODERN SPECIES	144	Slc41a3 (ENSCGRG00001010264)	Iqsec1 (ENSCGRG00001001080) #9	ENSCGRG00001020283	Nup210 (ENSCGRG00001004330) #10	Hdac11 (ENSCGRG00001018847) #11	Fbln2 (ENSCGRG00001005743) #12	Wnt7a (ENSCGRG00001010427) #13	ENSCGRG00001011855	ENSCGRG00001016456	ENSCGRG00001017374 #16	Tmem43 (ENSCGRG00001001263) #14	Xpc (ENSCGRG00001014190) #17	Lsm3 (ENSCGRG00001017598) #18	Slc6a6 (ENSCGRG00001019005) #20	Grip2 (ENSCGRG00001021106) #21	Ccdc174 (ENSCGRG00001021754) #22	4930590J08Rik (ENSCGRG00001017889) #23	Fgd5 (ENSCGRG00001013433) #24	Nr2c2 (ENSCGRG00001009601) #25	Mrps25 (ENSCGRG00001016556) #27	Rbsn (ENSCGRG00001018030) #28	Trh (ENSCGRG00001019768) #29	Prickle2 (ENSCGRG00001005583)	Adamts9 (ENSCGRG00001014518)	Magi1 (ENSCGRG00001004939)	Slc25a26 (ENSCGRG00001000286)	Lrig1 (ENSCGRG00001020436)	Kbtbd8 (ENSCGRG00001004948)	ENSCGRG00001004433	Suclg2 (ENSCGRG00001011522)	Tafa1 (ENSCGRG00001014933)
Golden Hamster	MODERN SPECIES	643	Uroc1 (ENSMAUG00000003968)	Zxdc (ENSMAUG00000019913)	Cfap100 (ENSMAUG00000018814)	Klf15 (ENSMAUG00000005299)	ENSMAUG00000014077	Slc41a3 (ENSMAUG00000015587)	Iqsec1 (ENSMAUG00000005597) #9	Nup210 (ENSMAUG00000012897) #10	Hdac11 (ENSMAUG00000005003) #11	Fbln2 (ENSMAUG00000021684) #12	Wnt7a (ENSMAUG00000016536) #13	Chchd4 (ENSMAUG00000021415) #16	Tmem43 (ENSMAUG00000021795) #14	Xpc (ENSMAUG00000019920) #17	Grip2 (ENSMAUG00000013630) #21	Ccdc174 (ENSMAUG00000010944) #22	4930590J08Rik (ENSMAUG00000015114) #23	Fgd5 (ENSMAUG00000015411) #24	Nr2c2 (ENSMAUG00000016840) #25	Rbsn (ENSMAUG00000010240) #28	Trh (ENSMAUG00000016316) #29	Prickle2 (ENSMAUG00000013569)	Adamts9 (ENSMAUG00000021440)	ENSMAUG00000010107	Magi1 (ENSMAUG00000021226)	ENSMAUG00000004998	Slc25a26 (ENSMAUG00000021604)	Lrig1 (ENSMAUG00000007470)	Kbtbd8 (ENSMAUG00000017081)	ENSMAUG00000009672	Suclg2 (ENSMAUG00000021321)
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958.a #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00440000035348.l
Prairie vole	MODERN SPECIES	84	Cfap100 (ENSMOCG00000021845)	Klf15 (ENSMOCG00000022079)	Aldh1l1 (ENSMOCG00000003909)	Slc41a3 (ENSMOCG00000017752)	Iqsec1 (ENSMOCG00000000442) #9	Nup210 (ENSMOCG00000009601) #10	Hdac11 (ENSMOCG00000000173) #11	Fbln2 (ENSMOCG00000009900) #12	Wnt7a (ENSMOCG00000007580) #13	Chchd4 (ENSMOCG00000019774) #16	Tmem43 (ENSMOCG00000000687) #14	Xpc (ENSMOCG00000002947) #17	Lsm3 (ENSMOCG00000014269) #18	Slc6a6 (ENSMOCG00000016250) #20	Grip2 (ENSMOCG00000015042) #21	ENSMOCG00000019764 #22	ENSMOCG00000020723 #22	4930590J08Rik (ENSMOCG00000001932) #23	Fgd5 (ENSMOCG00000018507) #24	Nr2c2 (ENSMOCG00000006010) #25	Mrps25 (ENSMOCG00000000775) #27	ENSMOCG00000020109	Trh (ENSMOCG00000020778) #29	Prickle2 (ENSMOCG00000009205)	Adamts9 (ENSMOCG00000020918)	Magi1 (ENSMOCG00000021420)	Slc25a26 (ENSMOCG00000012219)	Lrig1 (ENSMOCG00000016641)	Kbtbd8 (ENSMOCG00000014034)	ENSMOCG00000017135	Suclg2 (ENSMOCG00000019822)
Northern American deer mouse	MODERN SPECIES	16	Slc41a3 (ENSPEMG00000011388)	Iqsec1 (ENSPEMG00000014627) #9	Nup210 (ENSPEMG00000018996) #10	Hdac11 (ENSPEMG00000012425) #11	Fbln2 (ENSPEMG00000000066) #12	Wnt7a (ENSPEMG00000029574) #13	Vmn1r54 (ENSPEMG00000028564)	ENSPEMG00000031025	ENSPEMG00000025082	Chchd4 (ENSPEMG00000012767) #16	Tmem43 (ENSPEMG00000013314) #14	Xpc (ENSPEMG00000015475) #17	ENSPEMG00000015797 #18	Slc6a6 (ENSPEMG00000016693) #20	Grip2 (ENSPEMG00000009285) #21	Ccdc174 (ENSPEMG00000011995) #22	4930590J08Rik (ENSPEMG00000016805) #23	Fgd5 (ENSPEMG00000005651) #24	Mrps25 (ENSPEMG00000015595) #27	Rbsn (ENSPEMG00000026045) #28	Trh (ENSPEMG00000027938) #29	Prickle2 (ENSPEMG00000008467)	Adamts9 (ENSPEMG00000001414)	Magi1 (ENSPEMG00000018842)	ENSPEMG00000029600	Slc25a26 (ENSPEMG00000016974)	Lrig1 (ENSPEMG00000013717)	ENSPEMG00000007390	ENSPEMG00000030152	Suclg2 (ENSPEMG00000017086)	Tafa1 (ENSPEMG00000004313)
Cricetidae	ANCESTRAL SPECIES																	ENSGT00440000033958.b #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00440000033958.b #22
Prairie vole	MODERN SPECIES	84	Klf15 (ENSMOCG00000022079)	Aldh1l1 (ENSMOCG00000003909)	Slc41a3 (ENSMOCG00000017752)	Iqsec1 (ENSMOCG00000000442) #9	Nup210 (ENSMOCG00000009601) #10	Hdac11 (ENSMOCG00000000173) #11	Fbln2 (ENSMOCG00000009900) #12	Wnt7a (ENSMOCG00000007580) #13	Chchd4 (ENSMOCG00000019774) #16	Tmem43 (ENSMOCG00000000687) #14	Xpc (ENSMOCG00000002947) #17	Lsm3 (ENSMOCG00000014269) #18	Slc6a6 (ENSMOCG00000016250) #20	Grip2 (ENSMOCG00000015042) #21	ENSMOCG00000019764 #22	ENSMOCG00000020723 #22	4930590J08Rik (ENSMOCG00000001932) #23	Fgd5 (ENSMOCG00000018507) #24	Nr2c2 (ENSMOCG00000006010) #25	Mrps25 (ENSMOCG00000000775) #27	ENSMOCG00000020109	Trh (ENSMOCG00000020778) #29	Prickle2 (ENSMOCG00000009205)	Adamts9 (ENSMOCG00000020918)	Magi1 (ENSMOCG00000021420)	Slc25a26 (ENSMOCG00000012219)	Lrig1 (ENSMOCG00000016641)	Kbtbd8 (ENSMOCG00000014034)	ENSMOCG00000017135	Suclg2 (ENSMOCG00000019822)	Tafa1 (ENSMOCG00000005890)
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00440000035348.l
Mus	ANCESTRAL SPECIES	12	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00440000035348.l
Mus_A	DUPLICATION
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958.c.a #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00440000035348.l
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958.c.a #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00440000035348.l
Mouse	MODERN SPECIES	15	Cfap100 (ENSMUSG00000048794)	Klf15 (ENSMUSG00000030087)	Aldh1l1 (ENSMUSG00000030088)	Slc41a3 (ENSMUSG00000030089)	Iqsec1 (ENSMUSG00000034312) #9	Nup210 (ENSMUSG00000030091) #10	Hdac11 (ENSMUSG00000034245) #11	Fbln2 (ENSMUSG00000064080) #12	Wnt7a (ENSMUSG00000030093) #13	Chchd4 (ENSMUSG00000034203) #16	Tmem43 (ENSMUSG00000030095) #14	Xpc (ENSMUSG00000030094) #17	Lsm3 (ENSMUSG00000034192) #18	Slc6a6 (ENSMUSG00000030096) #20	Grip2 (ENSMUSG00000030098) #21	Ccdc174 (ENSMUSG00000034083) #22	4930590J08Rik (ENSMUSG00000034063) #23	Fgd5 (ENSMUSG00000034037) #24	Nr2c2 (ENSMUSG00000005893) #25	Mrps25 (ENSMUSG00000014551) #27	Rbsn (ENSMUSG00000014550) #28	Trh (ENSMUSG00000005892) #29	Prickle2 (ENSMUSG00000030020)	Adamts9 (ENSMUSG00000030022)	Magi1 (ENSMUSG00000045095)	Slc25a26 (ENSMUSG00000045100)	Lrig1 (ENSMUSG00000030029)	Kbtbd8 (ENSMUSG00000030031)	Suclg2 (ENSMUSG00000061838)	Tafa1 (ENSMUSG00000059187)	Nup50l (ENSMUSG00000072878)
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.i #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958.c.a #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00860000136292	ENSGT00860000136051	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a
Steppe mouse	MODERN SPECIES	3230	Cfap100 (ENSMSIG00000008087)	Klf15 (ENSMSIG00000008149)	Aldh1l1 (ENSMSIG00000008168)	Slc41a3 (ENSMSIG00000008250)	Iqsec1 (ENSMSIG00000008326) #9	Nup210 (ENSMSIG00000008561) #10	ENSMSIG00000008823 #11	Fbln2 (ENSMSIG00000008879) #12	Wnt7a (ENSMSIG00000008956) #13	Chchd4 (ENSMSIG00000008979) #16	Tmem43 (ENSMSIG00000009012) #14	Xpc (ENSMSIG00000009045) #17	Lsm3 (ENSMSIG00000009153) #18	Slc6a6 (ENSMSIG00000009201) #20	Grip2 (ENSMSIG00000009391) #21	Ccdc174 (ENSMSIG00000009644) #22	4930590J08Rik (ENSMSIG00000009662) #23	Fgd5 (ENSMSIG00000009754) #24	Nr2c2 (ENSMSIG00000009847) #25	Mrps25 (ENSMSIG00000009916) #27	Rbsn (ENSMSIG00000009926) #28	Trh (ENSMSIG00000009965) #29	ENSMSIG00000009984	Prickle2 (ENSMSIG00000009992)	ENSMSIG00000010030	Adamts9 (ENSMSIG00000010039)	ENSMSIG00000010285
Mus_A	ANCESTRAL SPECIES																	ENSGT00440000033958.c.b #22
Ryukyu mouse	MODERN SPECIES	15	BC048671 (MGP_CAROLIEiJ_G0028641)	MGP_CAROLIEiJ_G0028642	Uroc1 (MGP_CAROLIEiJ_G0028643)	Zxdc (MGP_CAROLIEiJ_G0028644)	Cfap100 (MGP_CAROLIEiJ_G0028645)	Klf15 (MGP_CAROLIEiJ_G0028646)	MGP_CAROLIEiJ_G0028647	Iqsec1 (MGP_CAROLIEiJ_G0028648) #9	Nup210 (MGP_CAROLIEiJ_G0028649) #10	Hdac11 (MGP_CAROLIEiJ_G0028650) #11	Fbln2 (MGP_CAROLIEiJ_G0028651) #12	Wnt7a (MGP_CAROLIEiJ_G0028652) #13	MGP_CAROLIEiJ_G0028655 #17	Slc6a6 (MGP_CAROLIEiJ_G0028656) #20	MGP_CAROLIEiJ_G0028657 #21	MGP_CAROLIEiJ_G0028658 #22	4930590J08Rik (MGP_CAROLIEiJ_G0028659) #23	Fgd5 (MGP_CAROLIEiJ_G0028660) #24	Nr2c2 (MGP_CAROLIEiJ_G0028661) #25	Mrps25 (MGP_CAROLIEiJ_G0028662) #27	Rbsn (MGP_CAROLIEiJ_G0028663) #28	Trh (MGP_CAROLIEiJ_G0028664) #29	Prickle2 (MGP_CAROLIEiJ_G0028665)	Adamts9 (MGP_CAROLIEiJ_G0028666)	MGP_CAROLIEiJ_G0028667	Magi1 (MGP_CAROLIEiJ_G0028668)	Slc25a26 (MGP_CAROLIEiJ_G0028669)	Lrig1 (MGP_CAROLIEiJ_G0028670)	Kbtbd8 (MGP_CAROLIEiJ_G0028671)	Suclg2 (MGP_CAROLIEiJ_G0028672)	MGP_CAROLIEiJ_G0028673
Mus_B	ANCESTRAL SPECIES																	ENSGT00440000033958.c.b #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00440000033958.c.b #22
Steppe mouse	MODERN SPECIES	2994								Lama4 (ENSMSIG00000001276)	Fam229b (ENSMSIG00000001215)	Tube1 (ENSMSIG00000001171)	Ccn6 (ENSMSIG00000001159)	ENSMSIG00000001142	ENSMSIG00000001131	Fyn (ENSMSIG00000001064)	Traf3ip2 (ENSMSIG00000001008)	ENSMSIG00000000979 #22	Rev3l (ENSMSIG00000000767)	ENSMSIG00000000716	ENSMSIG00000000705	ENSMSIG00000000678	ENSMSIG00000000663	Mfsd4b5 (ENSMSIG00000000610)	Mfsd4b1 (ENSMSIG00000000578)	Slc16a10 (ENSMSIG00000000537)	ENSMSIG00000000467	ENSMSIG00000000433	ENSMSIG00000000270	ENSMSIG00000000163
Mus_A	ANCESTRAL SPECIES																	ENSGT00440000033958.d #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00440000033958.d #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00440000033958.d #22
spretus	MODERN SPECIES	15	Cfap100 (MGP_SPRETEiJ_G0029669)	Klf15 (MGP_SPRETEiJ_G0029670)	Aldh1l1 (MGP_SPRETEiJ_G0029671)	Slc41a3 (MGP_SPRETEiJ_G0029672)	Iqsec1 (MGP_SPRETEiJ_G0029673) #9	Nup210 (MGP_SPRETEiJ_G0029674) #10	Hdac11 (MGP_SPRETEiJ_G0029675) #11	Fbln2 (MGP_SPRETEiJ_G0029676) #12	Wnt7a (MGP_SPRETEiJ_G0029677) #13	Chchd4 (MGP_SPRETEiJ_G0029678) #16	Tmem43 (MGP_SPRETEiJ_G0029679) #14	Xpc (MGP_SPRETEiJ_G0029680) #17	Lsm3 (MGP_SPRETEiJ_G0029681) #18	MGP_SPRETEiJ_G0029682 #20	Grip2 (MGP_SPRETEiJ_G0029683) #21	Ccdc174 (MGP_SPRETEiJ_G0029684) #22	4930590J08Rik (MGP_SPRETEiJ_G0029685) #23	Fgd5 (MGP_SPRETEiJ_G0029686) #24	Nr2c2 (MGP_SPRETEiJ_G0029687) #25	Mrps25 (MGP_SPRETEiJ_G0029688) #27	Rbsn (MGP_SPRETEiJ_G0029689) #28	Trh (MGP_SPRETEiJ_G0029690) #29	Prickle2 (MGP_SPRETEiJ_G0029691)	Adamts9 (MGP_SPRETEiJ_G0029692)	MGP_SPRETEiJ_G0029693	MGP_SPRETEiJ_G0029694	Magi1 (MGP_SPRETEiJ_G0029695)	Slc25a26 (MGP_SPRETEiJ_G0029696)	Lrig1 (MGP_SPRETEiJ_G0029697)	Kbtbd8 (MGP_SPRETEiJ_G0029698)	Suclg2 (MGP_SPRETEiJ_G0029699)
Shrew mouse	MODERN SPECIES	11	Cfap100 (MGP_PahariEiJ_G0022390)	Klf15 (MGP_PahariEiJ_G0022391)	Aldh1l1 (MGP_PahariEiJ_G0022392)	Slc41a3 (MGP_PahariEiJ_G0022393)	Iqsec1 (MGP_PahariEiJ_G0022394) #9	Nup210 (MGP_PahariEiJ_G0022395) #10	Hdac11 (MGP_PahariEiJ_G0022396) #11	Fbln2 (MGP_PahariEiJ_G0022397) #12	Wnt7a (MGP_PahariEiJ_G0022398) #13	Chchd4 (MGP_PahariEiJ_G0022399) #16	Tmem43 (MGP_PahariEiJ_G0022400) #14	Xpc (MGP_PahariEiJ_G0022401) #17	Lsm3 (MGP_PahariEiJ_G0022402) #18	Slc6a6 (MGP_PahariEiJ_G0022403) #20	Grip2 (MGP_PahariEiJ_G0022404) #21	Ccdc174 (MGP_PahariEiJ_G0022405) #22	4930590J08Rik (MGP_PahariEiJ_G0022406) #23	Fgd5 (MGP_PahariEiJ_G0022407) #24	Nr2c2 (MGP_PahariEiJ_G0022408) #25	Mrps25 (MGP_PahariEiJ_G0022409) #27	Rbsn (MGP_PahariEiJ_G0022410) #28	Trh (MGP_PahariEiJ_G0022411) #29	Prickle2 (MGP_PahariEiJ_G0022412)	Adamts9 (MGP_PahariEiJ_G0022413)	MGP_PahariEiJ_G0022414	MGP_PahariEiJ_G0022415	MGP_PahariEiJ_G0022416	MGP_PahariEiJ_G0022417	Magi1 (MGP_PahariEiJ_G0022418)	Slc25a26 (MGP_PahariEiJ_G0022419)	Lrig1 (MGP_PahariEiJ_G0022420)
Rat	MODERN SPECIES	14	Cfap100 (ENSRNOG00000017959)	Klf15 (ENSRNOG00000017808)	Aldh1l1 (ENSRNOG00000047023)	Slc41a3 (ENSRNOG00000045821)	Iqsec1 (ENSRNOG00000060350) #9	Nup210 (ENSRNOG00000005390) #10	Hdac11 (ENSRNOG00000006824) #11	Fbln2 (ENSRNOG00000007338) #12	Wnt7a (ENSRNOG00000048782) #13	Chchd4-ps1 (ENSRNOG00000022466) #16	Tmem43 (ENSRNOG00000007519) #14	Xpc (ENSRNOG00000008274) #17	Lsm3 (ENSRNOG00000008733) #18	Slc6a6 (ENSRNOG00000009019) #20	Grip2 (ENSRNOG00000009726) #21	Ccdc174 (ENSRNOG00000010090) #22	C4h3orf20 (ENSRNOG00000022155) #23	Fgd5 (ENSRNOG00000010213) #24	Nr2c2 (ENSRNOG00000010536) #25	Mrps25 (ENSRNOG00000010912) #27	Rbsn (ENSRNOG00000011391) #28	Trh (ENSRNOG00000011824) #29	Prickle2 (ENSRNOG00000012364)	Adamts9 (ENSRNOG00000023257)	Gm15737 (ENSRNOG00000064375)	ENSRNOG00000064824	Magi1 (ENSRNOG00000022060)	LOC100361920 (ENSRNOG00000052174)	ENSRNOG00000071067	Slc25a26 (ENSRNOG00000012831)	Lrig1 (ENSRNOG00000012952)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1707								ENSNGAG00000010769	ENSNGAG00000008249	Chchd4 (ENSNGAG00000010995) #16	Tmem43 (ENSNGAG00000000844) #14	Xpc (ENSNGAG00000022710) #17	ENSNGAG00000022450 #18	Slc6a6 (ENSNGAG00000022156) #20	Grip2 (ENSNGAG00000011926) #21	Ccdc174 (ENSNGAG00000011049) #22	Fgd5 (ENSNGAG00000024178) #24	Nr2c2 (ENSNGAG00000022501) #25	Mrps25 (ENSNGAG00000021861) #27	Rbsn (ENSNGAG00000022967) #28	Trh (ENSNGAG00000022332) #29	Tmcc1 (ENSNGAG00000010573) #31	Plxnd1 (ENSNGAG00000020476) #32	H1f8 (ENSNGAG00000023630) #36	Rho (ENSNGAG00000020656) #34	Ift122 (ENSNGAG00000022462) #37	ENSNGAG00000017381	Efcab12 (ENSNGAG00000008314)	ENSNGAG00000024001	Cand2 (ENSNGAG00000024002) #7	Tmem40 (ENSNGAG00000021850)
Lesser Egyptian jerboa	MODERN SPECIES	45	Commd10 (ENSJJAG00000019310)	Arl14epl (ENSJJAG00000014960)	Lvrn (ENSJJAG00000022104)	ENSJJAG00000009764	ENSJJAG00000013169	Cdo1 (ENSJJAG00000010804)	ENSJJAG00000011849	ENSJJAG00000014321	ENSJJAG00000012573	Fem1c (ENSJJAG00000017855)	ENSJJAG00000013957	Ccdc112 (ENSJJAG00000018302)	Pggt1b (ENSJJAG00000022637)	Trim36 (ENSJJAG00000016437)	Kcnn2 (ENSJJAG00000014162)	Ccdc174 (ENSJJAG00000014232) #22	4930590J08Rik (ENSJJAG00000010892) #23	Fgd5 (ENSJJAG00000001082) #24	Nr2c2 (ENSJJAG00000016580) #25	Mrps25 (ENSJJAG00000013413) #27	Rbsn (ENSJJAG00000024360) #28	ENSJJAG00000023012 #29	Tmcc1 (ENSJJAG00000019999) #31	ENSJJAG00000020659	Plxnd1 (ENSJJAG00000014069) #32	ENSJJAG00000014828 #36	Rho (ENSJJAG00000022285) #34	Ift122 (ENSJJAG00000020288) #37	ENSJJAG00000016695	ENSJJAG00000021233	Cand2 (ENSJJAG00000018247) #7
Kangaroo rat	MODERN SPECIES	331	Klf15 (ENSDORG00000024290)	ENSDORG00000014835	Slc41a3 (ENSDORG00000014834)	Iqsec1 (ENSDORG00000014831) #9	Nup210 (ENSDORG00000013458) #10	Hdac11 (ENSDORG00000009690) #11	Fbln2 (ENSDORG00000009692) #12	Wnt7a (ENSDORG00000028810) #13	ENSDORG00000028796	ENSDORG00000025656 #16	Tmem43 (ENSDORG00000002103) #14	Xpc (ENSDORG00000002105) #17	ENSDORG00000006894 #18	Slc6a6 (ENSDORG00000011320) #20	Grip2 (ENSDORG00000014464) #21	Ccdc174 (ENSDORG00000007328) #22	4930590J08Rik (ENSDORG00000007329) #23	Fgd5 (ENSDORG00000016297) #24	Nr2c2 (ENSDORG00000007038) #25	Mrps25 (ENSDORG00000026838) #27	Rbsn (ENSDORG00000009815) #28	Tmcc1 (ENSDORG00000026595) #31	Plxnd1 (ENSDORG00000000912) #32	ENSDORG00000026967 #36	Rho (ENSDORG00000000911) #34	Ift122 (ENSDORG00000000906) #37	ENSDORG00000000902	Rpl32 (ENSDORG00000008426)	Cand2 (ENSDORG00000008424) #7	ENSDORG00000023579	Raf1 (ENSDORG00000015622)
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a	ENSGT01030000234553.b.b.d.c.b.b	ENSGT01030000234553.b.b.d.c.b.a.a.b.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.f	ENSGT01030000234553.b.b.d.c.b.a.a.a.e.b	ENSGT01030000234553.b.b.d.c.b.a.a.b.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Marmotini	ANCESTRAL SPECIES	49	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.f	ENSGT01030000234553.b.b.d.c.b.a.a.b.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Alpin marmot	MODERN SPECIES	40	ENSMMMG00000011998	ENSMMMG00000011933	ZXDC (ENSMMMG00000011920)	UROC1 (ENSMMMG00000011851)	ENSMMMG00000011845	ENSMMMG00000011834	ENSMMMG00000011832	ENSMMMG00000011805	ENSMMMG00000011798	ENSMMMG00000011790 #16	TMEM43 (ENSMMMG00000011785) #14	XPC (ENSMMMG00000011669) #17	LSM3 (ENSMMMG00000011665) #18	SLC6A6 (ENSMMMG00000011651) #20	GRIP2 (ENSMMMG00000011620) #21	CCDC174 (ENSMMMG00000011603) #22	C3orf20 (ENSMMMG00000011543) #23	FGD5 (ENSMMMG00000011473) #24	NR2C2 (ENSMMMG00000011464) #25	MRPS25 (ENSMMMG00000011452) #27	RBSN (ENSMMMG00000011435) #28	TRH (ENSMMMG00000011424) #29	TMCC1 (ENSMMMG00000011365) #31	ENSMMMG00000011319 #32	ENSMMMG00000011299 #36	RHO (ENSMMMG00000011272) #34	IFT122 (ENSMMMG00000011068) #37	MBD4 (ENSMMMG00000011043)	EFCAB12 (ENSMMMG00000011023)	ENSMMMG00000010997	ENSMMMG00000010993 #7
Marmotini_b	ANCESTRAL SPECIES	62										ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Arctic ground squirrel	MODERN SPECIES	23									ENSUPAG00010000974	CHCHD4 (ENSUPAG00010000962) #16	TMEM43 (ENSUPAG00010000942) #14	XPC (ENSUPAG00010000908) #17	LSM3 (ENSUPAG00010000896) #18	SLC6A6 (ENSUPAG00010000886) #20	GRIP2 (ENSUPAG00010000760) #21	CCDC174 (ENSUPAG00010000716) #22	C3orf20 (ENSUPAG00010000647) #23	FGD5 (ENSUPAG00010000616) #24	NR2C2 (ENSUPAG00010000576) #25	MRPS25 (ENSUPAG00010000567) #27	RBSN (ENSUPAG00010000555) #28	TRH (ENSUPAG00010000545) #29	TMCC1 (ENSUPAG00010000491) #31	PLXND1 (ENSUPAG00010000023) #32	H1-8 (ENSUPAG00010023069) #36	RHO (ENSUPAG00010023066) #34	IFT122 (ENSUPAG00010023058) #37	ENSUPAG00010023053	ENSUPAG00010023052	EFCAB12 (ENSUPAG00010023049)	ENSUPAG00010023046
Squirrel	MODERN SPECIES	202										CHCHD4 (ENSSTOG00000006836) #16	TMEM43 (ENSSTOG00000029232) #14	XPC (ENSSTOG00000033914) #17	LSM3 (ENSSTOG00000006842) #18	ENSSTOG00000023459 #20	GRIP2 (ENSSTOG00000000954) #21	CCDC174 (ENSSTOG00000027414) #22	C3orf20 (ENSSTOG00000002907) #23	FGD5 (ENSSTOG00000005202) #24	NR2C2 (ENSSTOG00000005250) #25	MRPS25 (ENSSTOG00000030962) #27	RBSN (ENSSTOG00000022986) #28	TRH (ENSSTOG00000026247) #29	TMCC1 (ENSSTOG00000019869) #31	PLXND1 (ENSSTOG00000024621) #32	RHO (ENSSTOG00000028352) #34	IFT122 (ENSSTOG00000004353) #37	MBD4 (ENSSTOG00000020663)	ENSSTOG00000026505	CAND2 (ENSSTOG00000023136) #7	RAF1 (ENSSTOG00000025146)	MKRN2 (ENSSTOG00000010520)
Eurasian red squirrel	MODERN SPECIES	10	ENSSVLG00005019581	ENSSVLG00005019649	ENSSVLG00005019723	ENSSVLG00005019757	ENSSVLG00005019823	ENSSVLG00005019882	ENSSVLG00005019920	ENSSVLG00005019961	ENSSVLG00005020003	CHCHD4 (ENSSVLG00005020063) #16	TMEM43 (ENSSVLG00005020105) #14	XPC (ENSSVLG00005020171) #17	LSM3 (ENSSVLG00005020441) #18	SLC6A6 (ENSSVLG00005020466) #20	GRIP2 (ENSSVLG00005020528) #21	CCDC174 (ENSSVLG00005020744) #22	C3orf20 (ENSSVLG00005020807) #23	FGD5 (ENSSVLG00005017167) #24	NR2C2 (ENSSVLG00005017625) #25	MRPS25 (ENSSVLG00005017966) #27	RBSN (ENSSVLG00005018031) #28	TRH (ENSSVLG00005018181) #29	ENSSVLG00005018231	TMCC1 (ENSSVLG00005018250) #31	PLXND1 (ENSSVLG00005018384) #32	ENSSVLG00005018771 #36	RHO (ENSSVLG00005018827) #34	IFT122 (ENSSVLG00005018941) #37	MBD4 (ENSSVLG00005019308)	EFCAB12 (ENSSVLG00005019404)	ENSSVLG00005019450
Hystricomorpha	ANCESTRAL SPECIES	48	ENSGT00940000156836	ENSGT00390000011364	ENSGT00390000017131	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00390000016807	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00940000159178	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00940000155189 #31	ENSGT00940000160900 #36	ENSGT00390000016951 #29	ENSGT01020000230394.e.b.a #32	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000156836	ENSGT00390000011364	ENSGT00390000017131	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00390000016807	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00940000159178	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7	ENSGT00390000017530	ENSGT00940000156084	ENSGT00950000183077.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000156836	ENSGT00390000011364	ENSGT00390000017131	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00390000016807	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00940000159178	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7	ENSGT00390000017530	ENSGT00940000156084	ENSGT00950000183077.a.b
Long-tailed chinchilla	MODERN SPECIES	136	KBTBD12 (ENSCLAG00000006214)	MGLL (ENSCLAG00000010527)	ABTB1 (ENSCLAG00000010398)	PODXL2 (ENSCLAG00000011183)	MCM2 (ENSCLAG00000013539)	TPRA1 (ENSCLAG00000015612)	PLXNA1 (ENSCLAG00000007472)	CHCHD6 (ENSCLAG00000011198)	TXNRD3 (ENSCLAG00000010439)	CHCHD4 (ENSCLAG00000015153) #16	TMEM43 (ENSCLAG00000014810) #14	XPC (ENSCLAG00000013400) #17	LSM3 (ENSCLAG00000015997) #18	SLC6A6 (ENSCLAG00000010187) #20	GRIP2 (ENSCLAG00000013538) #21	CCDC174 (ENSCLAG00000011014) #22	C3orf20 (ENSCLAG00000013841) #23	FGD5 (ENSCLAG00000011953) #24	NR2C2 (ENSCLAG00000011082) #25	MRPS25 (ENSCLAG00000008381) #27	RBSN (ENSCLAG00000011613) #28	TMCC1 (ENSCLAG00000014727) #31	PLXND1 (ENSCLAG00000012627) #32	RHO (ENSCLAG00000006233) #34	IFT122 (ENSCLAG00000006170) #37	MBD4 (ENSCLAG00000008974)	ENSCLAG00000007426	CAND2 (ENSCLAG00000007541) #7	TMEM40 (ENSCLAG00000009668)	RAF1 (ENSCLAG00000010316)	MKRN2 (ENSCLAG00000008755)
Guinea pig	MODERN SPECIES	109						ENSCPOG00000036087	PLXNA1 (ENSCPOG00000014801)	CHCHD6 (ENSCPOG00000035116)	TXNRD3 (ENSCPOG00000007296)	CHCHD4 (ENSCPOG00000034611) #16	TMEM43 (ENSCPOG00000024656) #14	XPC (ENSCPOG00000006655) #17	LSM3 (ENSCPOG00000034071) #18	SLC6A6 (ENSCPOG00000014967) #20	GRIP2 (ENSCPOG00000021047) #21	CCDC174 (ENSCPOG00000039402) #22	C3orf20 (ENSCPOG00000006783) #23	FGD5 (ENSCPOG00000013157) #24	NR2C2 (ENSCPOG00000001512) #25	MRPS25 (ENSCPOG00000020398) #27	RBSN (ENSCPOG00000003200) #28	TMCC1 (ENSCPOG00000009299) #31	PLXND1 (ENSCPOG00000004989) #32	RHO (ENSCPOG00000004984) #34	IFT122 (ENSCPOG00000004975) #37	ENSCPOG00000004970	RPL32 (ENSCPOG00000019967)	CAND2 (ENSCPOG00000023286) #7	TMEM40 (ENSCPOG00000025632)	RAF1 (ENSCPOG00000001210)	MKRN2 (ENSCPOG00000001208)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00930000152979	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT01010000229800	ENSGT00530000063687.a	ENSGT00390000014874
Suina	ANCESTRAL SPECIES	1	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT01010000229800	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b
Chacoan peccary	MODERN SPECIES	950						ENSCWAG00000019826 #12	WNT7A (ENSCWAG00000019810) #13	ENSCWAG00000019798	ENSCWAG00000019729	CHCHD4 (ENSCWAG00000019712) #16	TMEM43 (ENSCWAG00000019695) #14	XPC (ENSCWAG00000019670) #17	LSM3 (ENSCWAG00000019659) #18	SLC6A6 (ENSCWAG00000019647) #20	GRIP2 (ENSCWAG00000019448) #21	CCDC174 (ENSCWAG00000019402) #22	C3orf20 (ENSCWAG00000019265) #23	FGD5 (ENSCWAG00000019086) #24	NR2C2 (ENSCWAG00000018980) #25	MRPS25 (ENSCWAG00000018966) #27	RBSN (ENSCWAG00000018943) #28	TRH (ENSCWAG00000018918) #29	TMCC1 (ENSCWAG00000018870) #31	PLXND1 (ENSCWAG00000018660) #32	H1-8 (ENSCWAG00000018609) #36	RHO (ENSCWAG00000018568) #34	IFT122 (ENSCWAG00000018289) #37	ENSCWAG00000018255	ENSCWAG00000018236	ENSCWAG00000018222	EFCAB12 (ENSCWAG00000018153)
Pig	MODERN SPECIES	4	ENSSSCG00000024000	CFAP92 (ENSSSCG00000024552)	ACAD9 (ENSSSCG00000023354)	IQSEC1 (ENSSSCG00000027812) #9	NUP210 (ENSSSCG00000011610) #10	HDAC11 (ENSSSCG00000028031) #11	FBLN2 (ENSSSCG00000011609) #12	WNT7A (ENSSSCG00000039010) #13	ENSSSCG00000048835	CHCHD4 (ENSSSCG00000011604) #16	TMEM43 (ENSSSCG00000011603) #14	XPC (ENSSSCG00000011602) #17	LSM3 (ENSSSCG00000011601) #18	SLC6A6 (ENSSSCG00000011600) #20	GRIP2 (ENSSSCG00000011599) #21	CCDC174 (ENSSSCG00000040702) #22	FGD5 (ENSSSCG00000011598) #24	NR2C2 (ENSSSCG00000011594) #25	MRPS25 (ENSSSCG00000034318) #27	RBSN (ENSSSCG00000036643) #28	TRH (ENSSSCG00000055507) #29	ENSSSCG00000044894	ENSSSCG00000040441	TMCC1 (ENSSSCG00000011593) #31	PLXND1 (ENSSSCG00000011592) #32	H1-8 (ENSSSCG00000011591) #36	RHO (ENSSSCG00000011590) #34	IFT122 (ENSSSCG00000011589) #37	MBD4 (ENSSSCG00000033303)	EFCAB12 (ENSSSCG00000011587)	RPL32 (ENSSSCG00000035811)
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00930000152979	ENSGT00940000175447	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT01010000229800	ENSGT00530000063687.a
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT01010000229800	ENSGT00530000063687.a
Cetacea	ANCESTRAL SPECIES	7	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132.u #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00930000152979	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT01010000229800	ENSGT00530000063687.a	ENSGT00390000014874
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.u #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558.n #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00930000152979	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.u.b #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558.n #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b	ENSGT00390000017740.a.b #7
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.u.b #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558.n #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b	ENSGT00390000017740.a.b #7
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.u.b #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558.n #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b	ENSGT00390000017740.a.b #7
Narwhal	MODERN SPECIES	310	EFCC1 (ENSMMNG00015013211)	CFAP92 (ENSMMNG00015013200)	ACAD9 (ENSMMNG00015013136)	IQSEC1 (ENSMMNG00015013071) #9	NUP210 (ENSMMNG00015013010) #10	HDAC11 (ENSMMNG00015012961) #11	FBLN2 (ENSMMNG00015012901) #12	WNT7A (ENSMMNG00015012882) #13	CHCHD4 (ENSMMNG00015012871) #16	TMEM43 (ENSMMNG00015012854) #14	XPC (ENSMMNG00015012813) #17	LSM3 (ENSMMNG00015012798) #18	SLC6A6 (ENSMMNG00015012780) #20	ENSMMNG00015012756 #21	ENSMMNG00015012733 #21	CCDC174 (ENSMMNG00015012708) #22	ENSMMNG00015012683 #23	FGD5 (ENSMMNG00015012622) #24	NR2C2 (ENSMMNG00015012595) #25	ENSMMNG00015012540 #27	RBSN (ENSMMNG00015012525) #28	TRH (ENSMMNG00015012517) #29	TMCC1 (ENSMMNG00015012483) #31	PLXND1 (ENSMMNG00015012370) #32	H1-8 (ENSMMNG00015012313) #36	RHO (ENSMMNG00015012293) #34	IFT122 (ENSMMNG00015012203) #37	MBD4 (ENSMMNG00015012156)	EFCAB12 (ENSMMNG00015012144)	RPL32 (ENSMMNG00015012118)	CAND2 (ENSMMNG00015012039) #7
Beluga whale	MODERN SPECIES	66	GP9 (ENSDLEG00000010224)	ENSDLEG00000010210	CFAP92 (ENSDLEG00000010066)	ACAD9 (ENSDLEG00000009919)	IQSEC1 (ENSDLEG00000009845) #9	ENSDLEG00000009821 #10	HDAC11 (ENSDLEG00000009783) #11	FBLN2 (ENSDLEG00000009714) #12	WNT7A (ENSDLEG00000009696) #13	ENSDLEG00000009673 #16	TMEM43 (ENSDLEG00000009650) #14	XPC (ENSDLEG00000009595) #17	ENSDLEG00000009566 #18	SLC6A6 (ENSDLEG00000009533) #20	GRIP2 (ENSDLEG00000009241) #21	CCDC174 (ENSDLEG00000009174) #22	FGD5 (ENSDLEG00000009061) #24	NR2C2 (ENSDLEG00000008987) #25	ENSDLEG00000008967 #27	ENSDLEG00000008956 #27	RBSN (ENSDLEG00000008914) #28	TRH (ENSDLEG00000008893) #29	TMCC1 (ENSDLEG00000008842) #31	PLXND1 (ENSDLEG00000008614) #32	H1-8 (ENSDLEG00000008521) #36	RHO (ENSDLEG00000008470) #34	IFT122 (ENSDLEG00000008304) #37	MBD4 (ENSDLEG00000008239)	ENSDLEG00000008201	RPL32 (ENSDLEG00000008175)	CAND2 (ENSDLEG00000008059) #7
Vaquita	MODERN SPECIES	2	GP9 (ENSPSNG00000022691)	EFCC1 (ENSPSNG00000022692)	CFAP92 (ENSPSNG00000022693)	ACAD9 (ENSPSNG00000022694)	IQSEC1 (ENSPSNG00000022695) #9	NUP210 (ENSPSNG00000022696) #10	HDAC11 (ENSPSNG00000022697) #11	FBLN2 (ENSPSNG00000022698) #12	WNT7A (ENSPSNG00000022699) #13	ENSPSNG00000022700 #16	TMEM43 (ENSPSNG00000022701) #14	XPC (ENSPSNG00000022702) #17	ENSPSNG00000022703 #18	SLC6A6 (ENSPSNG00000022704) #20	GRIP2 (ENSPSNG00000022705) #21	CCDC174 (ENSPSNG00000022707) #22	FGD5 (ENSPSNG00000022708) #24	NR2C2 (ENSPSNG00000022710) #25	ENSPSNG00000022711 #27	RBSN (ENSPSNG00000022712) #28	TRH (ENSPSNG00000022713) #29	ENSPSNG00000022714 #31	ENSPSNG00000022717 #31	PLXND1 (ENSPSNG00000022718) #32	H1-8 (ENSPSNG00000022719) #36	RHO (ENSPSNG00000022720) #34	IFT122 (ENSPSNG00000022721) #37	MBD4 (ENSPSNG00000022722)	EFCAB12 (ENSPSNG00000022723)	RPL32 (ENSPSNG00000022724)	CAND2 (ENSPSNG00000009832) #7
Dolphin	MODERN SPECIES	1175																CCDC174 (ENSTTRG00000009852) #22	ENSTTRG00000009866 #23	FGD5 (ENSTTRG00000009869) #24	NR2C2 (ENSTTRG00000009876) #25	MRPS25 (ENSTTRG00000009881) #27	RBSN (ENSTTRG00000009883) #28	TRH (ENSTTRG00000009888) #29
Sperm whale	MODERN SPECIES	9	RAB7A (ENSPCTG00005021510)	CNBP (ENSPCTG00005021559)	RAB43 (ENSPCTG00005021593)	GP9 (ENSPCTG00005021605)	EFCC1 (ENSPCTG00005021614)	CFAP92 (ENSPCTG00005021671)	ACAD9 (ENSPCTG00005021782)	IQSEC1 (ENSPCTG00005021839) #9	FBLN2 (ENSPCTG00005021931) #12	WNT7A (ENSPCTG00005021969) #13	XPC (ENSPCTG00005021979) #17	TMEM43 (ENSPCTG00005021993) #14	CHCHD4 (ENSPCTG00005021998) #16	SLC6A6 (ENSPCTG00005022008) #20	ENSPCTG00005004303 #21	CCDC174 (ENSPCTG00005004364) #22	C3orf20 (ENSPCTG00005004416) #23	FGD5 (ENSPCTG00005004623) #24	ENSPCTG00005005367	NR2C2 (ENSPCTG00005005417) #25	MRPS25 (ENSPCTG00005005475) #27	RBSN (ENSPCTG00005005519) #28	TMCC1 (ENSPCTG00005005558) #31	ENSPCTG00005005601	TRH (ENSPCTG00005005621) #29	ENSPCTG00005005684 #32	ENSPCTG00005005647	H1-8 (ENSPCTG00005005747) #36	RHO (ENSPCTG00005005781) #34	IFT122 (ENSPCTG00005005825) #37	MBD4 (ENSPCTG00005005918)
Blue whale	MODERN SPECIES	2	EFCC1 (ENSBMSG00010012255)	CFAP92 (ENSBMSG00010012178)	ACAD9 (ENSBMSG00010012123)	IQSEC1 (ENSBMSG00010012039) #9	NUP210 (ENSBMSG00010011953) #10	HDAC11 (ENSBMSG00010011895) #11	FBLN2 (ENSBMSG00010011854) #12	WNT7A (ENSBMSG00010011831) #13	ENSBMSG00010011817	ENSBMSG00010011806 #16	TMEM43 (ENSBMSG00010011796) #14	XPC (ENSBMSG00010011503) #17	LSM3 (ENSBMSG00010011411) #18	SLC6A6 (ENSBMSG00010011361) #20	GRIP2 (ENSBMSG00010011207) #21	CCDC174 (ENSBMSG00010011163) #22	C3orf20 (ENSBMSG00010011129) #23	FGD5 (ENSBMSG00010011044) #24	NR2C2 (ENSBMSG00010010995) #25	MRPS25 (ENSBMSG00010010976) #27	RBSN (ENSBMSG00010010963) #28	TRH (ENSBMSG00010010946) #29	TMCC1 (ENSBMSG00010010919) #31	PLXND1 (ENSBMSG00010010833) #32	ENSBMSG00010010803	RHO (ENSBMSG00010010727) #34	IFT122 (ENSBMSG00010010593) #37	ENSBMSG00010010542	ENSBMSG00010010533	EFCAB12 (ENSBMSG00010010503)	RPL32 (ENSBMSG00010010483)
Pecora	ANCESTRAL SPECIES	17	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d	ENSGT00390000017740.a.b #7
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	16	CFAP92 (ENSCHYG00000020007)	ACAD9 (ENSCHYG00000020301)	IQSEC1 (ENSCHYG00000020598) #9	NUP210 (ENSCHYG00000021572) #10	HDAC11 (ENSCHYG00000022340) #11	FBLN2 (ENSCHYG00000022807) #12	WNT7A (ENSCHYG00000023307) #13	ENSCHYG00000023332	ENSCHYG00000023376	ENSCHYG00000023706 #16	TMEM43 (ENSCHYG00000023737) #14	XPC (ENSCHYG00000023838) #17	LSM3 (ENSCHYG00000023916) #18	SLC6A6 (ENSCHYG00000023942) #20	GRIP2 (ENSCHYG00000024067) #21	ENSCHYG00000024372 #22	C3orf20 (ENSCHYG00000024531) #23	FGD5 (ENSCHYG00000024639) #24	NR2C2 (ENSCHYG00000024864) #25	ENSCHYG00000025047 #27	RBSN (ENSCHYG00000025089) #28	ENSCHYG00000025128	TIMP4 (ENSCHYG00000025170)	PPARG (ENSCHYG00000025198)	TSEN2 (ENSCHYG00000025333)	MKRN2OS (ENSCHYG00000025406)	MKRN2 (ENSCHYG00000025428)	RAF1 (ENSCHYG00000025496)	ENSCHYG00000013805	TMEM40 (ENSCHYG00000013848)	CAND2 (ENSCHYG00000014141) #7
Yarkand deer	MODERN SPECIES	27	SNX20 (ENSCHYG00000004988)	NKD1 (ENSCHYG00000004944)	BRD7 (ENSCHYG00000004908)	ADCY7 (ENSCHYG00000004827)	TENT4B (ENSCHYG00000004780)	HEATR3 (ENSCHYG00000004729)	CNEP1R1 (ENSCHYG00000004697)	ZNF423 (ENSCHYG00000004665)	C16orf78 (ENSCHYG00000004643)	CBLN1 (ENSCHYG00000004635)	N4BP1 (ENSCHYG00000004618)	ENSCHYG00000004605	LONP2 (ENSCHYG00000004582)	ABCC11 (ENSCHYG00000004542)	ABCC12 (ENSCHYG00000004510)	ENSCHYG00000004492 #22	ENSCHYG00000002555	ITFG1 (ENSCHYG00000001906)	ENSCHYG00000001892	NETO2 (ENSCHYG00000001873)	DNAJA2 (ENSCHYG00000001848)	GPT2 (ENSCHYG00000001813)	ENSCHYG00000001787	MYLK3 (ENSCHYG00000001728)	ORC6 (ENSCHYG00000001691)	VPS35 (ENSCHYG00000001622)	SHCBP1 (ENSCHYG00000001586)	ENSCHYG00000001567	ENSCHYG00000001554	DBNDD1 (ENSCHYG00000001531)	ENSCHYG00000001480
Yarkand deer	MODERN SPECIES	2	ENSCHYG00000009840	FOXN2 (ENSCHYG00000009915)	PPP1R21 (ENSCHYG00000010072)	ENSCHYG00000010413	GTF2A1L (ENSCHYG00000010466)	LHCGR (ENSCHYG00000010738)	FSHR (ENSCHYG00000010939)	ENSCHYG00000011174	NRXN1 (ENSCHYG00000011322)	ENSCHYG00000014456	ASB3 (ENSCHYG00000014492)	CHAC2 (ENSCHYG00000014670)	ERLEC1 (ENSCHYG00000014797)	PSME4 (ENSCHYG00000015425)	ENSCHYG00000016000	ENSCHYG00000016207 #22	ENSCHYG00000016240	C2orf73 (ENSCHYG00000016294)	ENSCHYG00000016372	SPTBN1 (ENSCHYG00000016452)	EML6 (ENSCHYG00000017556)	RTN4 (ENSCHYG00000018275)	ENSCHYG00000018581	ENSCHYG00000018614	ENSCHYG00000018711	MTIF2 (ENSCHYG00000018835)	ENSCHYG00000019045	CCDC88A (ENSCHYG00000019389)	CFAP36 (ENSCHYG00000024204)	PPP4R3B (ENSCHYG00000024346)	PNPT1 (ENSCHYG00000024494)
Percora_a	ANCESTRAL SPECIES	19	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.d	ENSGT00390000017740.a.b #7
Bovidae	ANCESTRAL SPECIES	19	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000000616.l	ENSGT00940000159798	ENSGT00940000156062	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839	ENSGT00950000183077.a.b	ENSGT00940000156084	ENSGT00390000017530	ENSGT00390000017740.a.b #7
Bovinae	ANCESTRAL SPECIES	16	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000000616.l	ENSGT00940000159798	ENSGT00940000156062	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839	ENSGT00950000183077.a.b	ENSGT00940000156084	ENSGT00390000017530	ENSGT00390000017740.a.b #7
Bos	ANCESTRAL SPECIES	16	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000000616.l	ENSGT00940000159798	ENSGT00940000156062	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839	ENSGT00950000183077.a.b	ENSGT00940000156084	ENSGT00390000017530	ENSGT00390000017740.a.b #7
Bos_b	ANCESTRAL SPECIES	17	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000000616.l	ENSGT00940000159798	ENSGT00940000156062	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839	ENSGT00950000183077.a.b	ENSGT00940000156084	ENSGT00390000017530	ENSGT00390000017740.a.b #7
Cow	MODERN SPECIES	14	CFAP92 (ENSBTAG00000003244)	ACAD9 (ENSBTAG00000003242)	IQSEC1 (ENSBTAG00000003237) #9	NUP210 (ENSBTAG00000003665) #10	HDAC11 (ENSBTAG00000007208) #11	FBLN2 (ENSBTAG00000004014) #12	WNT7A (ENSBTAG00000001668) #13	ENSBTAG00000017173	ENSBTAG00000023918	CHCHD4 (ENSBTAG00000015529) #16	TMEM43 (ENSBTAG00000007360) #14	XPC (ENSBTAG00000007362) #17	LSM3 (ENSBTAG00000007363) #18	SLC6A6 (ENSBTAG00000011088) #20	GRIP2 (ENSBTAG00000011896) #21	CCDC174 (ENSBTAG00000038298) #22	C22H3orf20 (ENSBTAG00000040133) #23	FGD5 (ENSBTAG00000006789) #24	NR2C2 (ENSBTAG00000013716) #25	MRPS25 (ENSBTAG00000013723) #27	RBSN (ENSBTAG00000013725) #28	ENSBTAG00000031115	TIMP4 (ENSBTAG00000020263)	SYN2 (ENSBTAG00000020260)	PPARG (ENSBTAG00000001333)	TSEN2 (ENSBTAG00000037980)	MKRN2OS (ENSBTAG00000024991)	MKRN2 (ENSBTAG00000004512)	RAF1 (ENSBTAG00000045748)	TMEM40 (ENSBTAG00000000161)	CAND2 (ENSBTAG00000015273) #7
Hybrid Bos Indicus	MODERN SPECIES	14	IQSEC1 (ENSBIXG00005004938) #9	NUP210 (ENSBIXG00005028460) #10	ENSBIXG00005028341 #11	FBLN2 (ENSBIXG00005028202) #12	WNT7A (ENSBIXG00005004835) #13	XPC (ENSBIXG00005004824) #17	ENSBIXG00005028013	ENSBIXG00005027959	CHCHD4 (ENSBIXG00005027940) #16	TMEM43 (ENSBIXG00005027897) #14	LSM3 (ENSBIXG00005027836) #18	SLC6A6 (ENSBIXG00005027782) #20	GRIP2 (ENSBIXG00005027668) #21	ENSBIXG00005027488	ENSBIXG00005027475	CCDC174 (ENSBIXG00005027454) #22	C3orf20 (ENSBIXG00005027421) #23	FGD5 (ENSBIXG00005027347) #24	NR2C2 (ENSBIXG00005026766) #25	MRPS25 (ENSBIXG00005026733) #27	RBSN (ENSBIXG00005026693) #28	SYN2 (ENSBIXG00005026582)	TIMP4 (ENSBIXG00005026516)	ENSBIXG00005026465	MKRN2OS (ENSBIXG00005026155)	MKRN2 (ENSBIXG00005026143)	RAF1 (ENSBIXG00005004450)	TMEM40 (ENSBIXG00005026020)	CAND2 (ENSBIXG00005025955) #7	RPL32 (ENSBIXG00005025898)	MBD4 (ENSBIXG00005025831)
Bos_a	ANCESTRAL SPECIES	9	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00940000159798	ENSGT00940000156062	ENSGT00940000158273	ENSGT00390000003839	ENSGT00950000183077.a.b	ENSGT00940000156084	ENSGT00390000017530	ENSGT00390000017740.a.b #7	ENSGT00940000153973.d	ENSGT00390000014874
Domestic yak	MODERN SPECIES	14	ENSBGRG00000014318	ACAD9 (ENSBGRG00000014463)	IQSEC1 (ENSBGRG00000015000) #9	NUP210 (ENSBGRG00000016433) #10	ENSBGRG00000016882 #11	FBLN2 (ENSBGRG00000017885) #12	WNT7A (ENSBGRG00000018308) #13	ENSBGRG00000018348	ENSBGRG00000018493	CHCHD4 (ENSBGRG00000018588) #16	TMEM43 (ENSBGRG00000018668) #14	XPC (ENSBGRG00000018846) #17	ENSBGRG00000019432 #18	SLC6A6 (ENSBGRG00000019545) #20	GRIP2 (ENSBGRG00000020144) #21	CCDC174 (ENSBGRG00000021048) #22	C3orf20 (ENSBGRG00000021321) #23	FGD5 (ENSBGRG00000021386) #24	NR2C2 (ENSBGRG00000021614) #25	MRPS25 (ENSBGRG00000021676) #27	RBSN (ENSBGRG00000021762) #28	SYN2 (ENSBGRG00000021920)	TIMP4 (ENSBGRG00000022226)	ENSBGRG00000022315	MKRN2OS (ENSBGRG00000022696)	MKRN2 (ENSBGRG00000022735)	RAF1 (ENSBGRG00000022891)	TMEM40 (ENSBGRG00000023210)	CAND2 (ENSBGRG00000023333) #7	RPL32 (ENSBGRG00000023548)	EFCAB12 (ENSBGRG00000023675)
Wild yak	MODERN SPECIES	1036					NUP210 (ENSBMUG00000016331) #10	HDAC11 (ENSBMUG00000016382) #11	FBLN2 (ENSBMUG00000016869) #12	WNT7A (ENSBMUG00000017015) #13	ENSBMUG00000017074	CHCHD4 (ENSBMUG00000017090) #16	TMEM43 (ENSBMUG00000017104) #14	XPC (ENSBMUG00000017174) #17	LSM3 (ENSBMUG00000017198) #18	SLC6A6 (ENSBMUG00000017219) #20	GRIP2 (ENSBMUG00000017311) #21	CCDC174 (ENSBMUG00000017336) #22	C3orf20 (ENSBMUG00000017362) #23	FGD5 (ENSBMUG00000017500) #24	NR2C2 (ENSBMUG00000017570) #25	MRPS25 (ENSBMUG00000017623) #27	RBSN (ENSBMUG00000017669) #28
American bison	MODERN SPECIES	3340	ENSBBBG00000010529	ACAD9 (ENSBBBG00000001842)	IQSEC1 (ENSBBBG00000010622) #9	NUP210 (ENSBBBG00000001892) #10	HDAC11 (ENSBBBG00000001904) #11	FBLN2 (ENSBBBG00000006978) #12	WNT7A (ENSBBBG00000010868) #13	ENSBBBG00000010906	ENSBBBG00000001941	CHCHD4 (ENSBBBG00000010930) #16	TMEM43 (ENSBBBG00000010956) #14	XPC (ENSBBBG00000001954) #17	LSM3 (ENSBBBG00000007967) #18	SLC6A6 (ENSBBBG00000010987) #20	GRIP2 (ENSBBBG00000011088) #21	CCDC174 (ENSBBBG00000002003) #22	C3orf20 (ENSBBBG00000011153) #23	NR2C2 (ENSBBBG00000011226) #25	MRPS25 (ENSBBBG00000011234) #27	RBSN (ENSBBBG00000011250) #28	TIMP4 (ENSBBBG00000011264)	SYN2 (ENSBBBG00000011280)	PPARG (ENSBBBG00000011336)	TSEN2 (ENSBBBG00000002087)	MKRN2OS (ENSBBBG00000006934)	MKRN2 (ENSBBBG00000011440)	RAF1 (ENSBBBG00000011493)	TMEM40 (ENSBBBG00000011569)	CAND2 (ENSBBBG00000002144) #7	RPL32 (ENSBBBG00000002148)	EFCAB12 (ENSBBBG00000011681)
Caprinae	ANCESTRAL SPECIES	15	ENSGT00390000007219	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000000616.l	ENSGT00940000159798	ENSGT00940000156062	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839	ENSGT00950000183077.a.b	ENSGT00940000156084	ENSGT00390000017530	ENSGT00390000017740.a.b #7
Goat	MODERN SPECIES	14	ENSCHIG00000011214	ENSCHIG00000011159	ACAD9 (ENSCHIG00000020865)	IQSEC1 (ENSCHIG00000025033) #9	NUP210 (ENSCHIG00000018468) #10	HDAC11 (ENSCHIG00000010417) #11	ENSCHIG00000017980 #12	WNT7A (ENSCHIG00000022383) #13	ENSCHIG00000007622	CHCHD4 (ENSCHIG00000018477) #16	TMEM43 (ENSCHIG00000020802) #14	XPC (ENSCHIG00000017709) #17	LSM3 (ENSCHIG00000024650) #18	SLC6A6 (ENSCHIG00000024785) #20	GRIP2 (ENSCHIG00000016620) #21	CCDC174 (ENSCHIG00000008286) #22	C3orf20 (ENSCHIG00000009719) #23	FGD5 (ENSCHIG00000023792) #24	NR2C2 (ENSCHIG00000008676) #25	MRPS25 (ENSCHIG00000009931) #27	RBSN (ENSCHIG00000019361) #28	ENSCHIG00000027078	TIMP4 (ENSCHIG00000017995)	SYN2 (ENSCHIG00000024912)	PPARG (ENSCHIG00000015877)	TSEN2 (ENSCHIG00000013772)	MKRN2OS (ENSCHIG00000013445)	MKRN2 (ENSCHIG00000021098)	RAF1 (ENSCHIG00000006954)	CAND2 (ENSCHIG00000017799) #7	RPL32 (ENSCHIG00000011099)
Rambouillet Sheep	MODERN SPECIES	10	ISY1 (ENSOARG00020016029)	RAB43 (ENSOARG00020015993)	GP9 (ENSOARG00020015968)	EFCC1 (ENSOARG00020015940)	IQSEC1 (ENSOARG00020015244) #9	NUP210 (ENSOARG00020013605) #10	HDAC11 (ENSOARG00020011736) #11	WNT7A (ENSOARG00020025976) #13	ENSOARG00020025971	ENSOARG00020025966	CHCHD4 (ENSOARG00020025962) #16	TMEM43 (ENSOARG00020025957) #14	ENSOARG00020025950 #18	SLC6A6 (ENSOARG00020025943) #20	GRIP2 (ENSOARG00020025919) #21	CCDC174 (ENSOARG00020025904) #22	C3orf20 (ENSOARG00020025893) #23	NR2C2 (ENSOARG00020025878) #25	MRPS25 (ENSOARG00020025871) #27	RBSN (ENSOARG00020025862) #28	ENSOARG00020025856	SYN2 (ENSOARG00020025846)	PPARG (ENSOARG00020025834)	TSEN2 (ENSOARG00020025828)	MKRN2OS (ENSOARG00020025824)	MKRN2 (ENSOARG00020025818)	RAF1 (ENSOARG00020025810)	TMEM40 (ENSOARG00020025803)	CAND2 (ENSOARG00020025794) #7	RPL32 (ENSOARG00020025785)	EFCAB12 (ENSOARG00020025775)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1221	ACAD9 (ENSMMSG00000023625)	IQSEC1 (ENSMMSG00000023645) #9	ENSMMSG00000023671	NUP210 (ENSMMSG00000023684) #10	HDAC11 (ENSMMSG00000023715) #11	FBLN2 (ENSMMSG00000023788) #12	WNT7A (ENSMMSG00000023850) #13	ENSMMSG00000023855	ENSMMSG00000023860	CHCHD4 (ENSMMSG00000023866) #16	TMEM43 (ENSMMSG00000023872) #14	XPC (ENSMMSG00000023884) #17	LSM3 (ENSMMSG00000023892) #18	SLC6A6 (ENSMMSG00000023907) #20	GRIP2 (ENSMMSG00000023940) #21	ENSMMSG00000023958 #22	C3orf20 (ENSMMSG00000023974) #23	FGD5 (ENSMMSG00000023995) #24	NR2C2 (ENSMMSG00000024042) #25	MRPS25 (ENSMMSG00000024052) #27	RBSN (ENSMMSG00000024056) #28	TRH (ENSMMSG00000024061) #29	ENSMMSG00000024063	TMCC1 (ENSMMSG00000024064) #31	PLXND1 (ENSMMSG00000024073) #32	ENSMMSG00000024082 #36	RHO (ENSMMSG00000024086) #34	IFT122 (ENSMMSG00000024092) #37	MBD4 (ENSMMSG00000024114)	EFCAB12 (ENSMMSG00000024116)	RPL32 (ENSMMSG00000024124)
Siberian musk deer	MODERN SPECIES	57															MANEA (ENSMMSG00000013181)	ENSMMSG00000013154 #22	FUT9 (ENSMMSG00000013147)	UFL1 (ENSMMSG00000013113)	FHL5 (ENSMMSG00000013095)	GPR63 (ENSMMSG00000013085)	NDUFAF4 (ENSMMSG00000013073)	ENSMMSG00000013052	KLHL32 (ENSMMSG00000012591)	MMS22L (ENSMMSG00000012530)	ENSMMSG00000012510	POU3F2 (ENSMMSG00000012495)	FBXL4 (ENSMMSG00000012478)	FAXC (ENSMMSG00000012455)	COQ3 (ENSMMSG00000012403)	PNISR (ENSMMSG00000012362)	ENSMMSG00000012312
Camelidae	ANCESTRAL SPECIES	7	ENSGT00390000014109	ENSGT00940000161980	ENSGT00390000007219	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.b
Alpaca	MODERN SPECIES	1234																CCDC174 (ENSVPAG00000001179) #22
Arabian camel	MODERN SPECIES	8	RAB43 (ENSCDRG00005009894)	ENSCDRG00005009274	ACAD9 (ENSCDRG00005009090)	IQSEC1 (ENSCDRG00005007783) #9	NUP210 (ENSCDRG00005005049) #10	HDAC11 (ENSCDRG00005004608) #11	FBLN2 (ENSCDRG00005004504) #12	WNT7A (ENSCDRG00005004471) #13	CHCHD4 (ENSCDRG00005004452) #16	TMEM43 (ENSCDRG00005004382) #14	XPC (ENSCDRG00005004331) #17	LSM3 (ENSCDRG00005004298) #18	SLC6A6 (ENSCDRG00005004206) #20	GRIP2 (ENSCDRG00005004071) #21	ENSCDRG00005004055	CCDC174 (ENSCDRG00005003993) #22	C3orf20 (ENSCDRG00005003918) #23	FGD5 (ENSCDRG00005003759) #24	NR2C2 (ENSCDRG00005003539) #25	MRPS25 (ENSCDRG00005003419) #27	RBSN (ENSCDRG00005003390) #28	TRH (ENSCDRG00005003364) #29	TMCC1 (ENSCDRG00005018594) #31	PLXND1 (ENSCDRG00005018551) #32	ENSCDRG00005018533 #32	ENSCDRG00005018504	ENSCDRG00005018477	RHO (ENSCDRG00005018442) #34	IFT122 (ENSCDRG00005018267) #37	MBD4 (ENSCDRG00005018206)	EFCAB12 (ENSCDRG00005018119)
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132.z #16	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000017740.a.b #7
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000007219	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d	ENSGT00940000153973.c.a.b.a.b
Caniformia	ANCESTRAL SPECIES	4	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951.gb #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
American mink	DUPLICATION
American mink	MODERN SPECIES	287									CHCHD4 (ENSNVIG00000010189) #16	TMEM43 (ENSNVIG00000010171) #14	XPC (ENSNVIG00000010151) #17	LSM3 (ENSNVIG00000010143) #18	SLC6A6 (ENSNVIG00000010115) #20	GRIP2 (ENSNVIG00000010025) #21	ENSNVIG00000010012 #22	ENSNVIG00000009972 #22	C3orf20 (ENSNVIG00000009902) #23	FGD5 (ENSNVIG00000009850) #24	NR2C2 (ENSNVIG00000009821) #25	MRPS25 (ENSNVIG00000009805) #27	RBSN (ENSNVIG00000009795) #28	TRH (ENSNVIG00000009787) #29	TMCC1 (ENSNVIG00000009775) #31	PLXND1 (ENSNVIG00000009720) #32	H1-8 (ENSNVIG00000009706) #36	RHO (ENSNVIG00000009693) #34	IFT122 (ENSNVIG00000009217) #37	MBD4 (ENSNVIG00000009126)	EFCAB12 (ENSNVIG00000009088)	ENSNVIG00000009040	CAND2 (ENSNVIG00000008985) #7
American mink	MODERN SPECIES	287										CHCHD4 (ENSNVIG00000010189) #16	TMEM43 (ENSNVIG00000010171) #14	XPC (ENSNVIG00000010151) #17	LSM3 (ENSNVIG00000010143) #18	SLC6A6 (ENSNVIG00000010115) #20	GRIP2 (ENSNVIG00000010025) #21	ENSNVIG00000010012 #22	ENSNVIG00000009972 #22	C3orf20 (ENSNVIG00000009902) #23	FGD5 (ENSNVIG00000009850) #24	NR2C2 (ENSNVIG00000009821) #25	MRPS25 (ENSNVIG00000009805) #27	RBSN (ENSNVIG00000009795) #28	TRH (ENSNVIG00000009787) #29	TMCC1 (ENSNVIG00000009775) #31	PLXND1 (ENSNVIG00000009720) #32	H1-8 (ENSNVIG00000009706) #36	RHO (ENSNVIG00000009693) #34	IFT122 (ENSNVIG00000009217) #37	MBD4 (ENSNVIG00000009126)	EFCAB12 (ENSNVIG00000009088)	ENSNVIG00000009040
Ferret	MODERN SPECIES	163	CFAP92 (ENSMPUG00000017299)	ACAD9 (ENSMPUG00000017287)	IQSEC1 (ENSMPUG00000017284) #9	NUP210 (ENSMPUG00000017280) #10	ENSMPUG00000017279	HDAC11 (ENSMPUG00000017271) #11	FBLN2 (ENSMPUG00000017267) #12	ENSMPUG00000017265	WNT7A (ENSMPUG00000017264) #13	CHCHD4 (ENSMPUG00000017261) #16	TMEM43 (ENSMPUG00000017259) #14	ENSMPUG00000017257	ENSMPUG00000017256 #18	SLC6A6 (ENSMPUG00000017255) #20	GRIP2 (ENSMPUG00000017253) #21	CCDC174 (ENSMPUG00000017252) #22	C3orf20 (ENSMPUG00000017251) #23	FGD5 (ENSMPUG00000017250) #24	NR2C2 (ENSMPUG00000017249) #25	MRPS25 (ENSMPUG00000017248) #27	RBSN (ENSMPUG00000017247) #28	TRH (ENSMPUG00000017246) #29	TMCC1 (ENSMPUG00000017243) #31	ENSMPUG00000017241	PLXND1 (ENSMPUG00000017238) #32	ENSMPUG00000017237	RHO (ENSMPUG00000017225) #34	IFT122 (ENSMPUG00000017197) #37	MBD4 (ENSMPUG00000017195)	EFCAB12 (ENSMPUG00000017190)	ENSMPUG00000017189
Ursidae	ANCESTRAL SPECIES	11	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b.d #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000017740.a.b #7
Ursus	ANCESTRAL SPECIES	43	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b.d #34	ENSGT00390000001016.b #37	ENSGT00390000012138.a.a.j.s.b	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.c.a
Polar bear	MODERN SPECIES	210	ENSUMAG00000015120	ENSUMAG00000015128	CFAP92 (ENSUMAG00000015150)	ACAD9 (ENSUMAG00000015181)	IQSEC1 (ENSUMAG00000015296) #9	NUP210 (ENSUMAG00000015439) #10	HDAC11 (ENSUMAG00000015867) #11	FBLN2 (ENSUMAG00000015872) #12	WNT7A (ENSUMAG00000015882) #13	CHCHD4 (ENSUMAG00000015891) #16	TMEM43 (ENSUMAG00000015893) #14	XPC (ENSUMAG00000015898) #17	LSM3 (ENSUMAG00000015905) #18	SLC6A6 (ENSUMAG00000016085) #20	GRIP2 (ENSUMAG00000016889) #21	CCDC174 (ENSUMAG00000017022) #22	C3orf20 (ENSUMAG00000017032) #23	FGD5 (ENSUMAG00000017065) #24	NR2C2 (ENSUMAG00000017295) #25	MRPS25 (ENSUMAG00000017301) #27	RBSN (ENSUMAG00000017308) #28	TRH (ENSUMAG00000017316) #29	TMCC1 (ENSUMAG00000017322) #31	PLXND1 (ENSUMAG00000017372) #32	RHO (ENSUMAG00000017511) #34	IFT122 (ENSUMAG00000017522) #37	MBD4 (ENSUMAG00000017542)	ENSUMAG00000017544	EFCAB12 (ENSUMAG00000017549)	RPL32 (ENSUMAG00000017557)	CAND2 (ENSUMAG00000017566) #7
American black bear	MODERN SPECIES	5803																CCDC174 (ENSUAMG00000013124) #22
Giant Panda	MODERN SPECIES	14	GP9 (ENSAMEG00000015373)	ENSAMEG00000025541	ENSAMEG00000015377	ENSAMEG00000015386	ENSAMEG00000015435 #9	NUP210 (ENSAMEG00000009583) #10	HDAC11 (ENSAMEG00000009565) #11	FBLN2 (ENSAMEG00000009506) #12	WNT7A (ENSAMEG00000030362) #13	CHCHD4 (ENSAMEG00000009457) #16	TMEM43 (ENSAMEG00000009426) #14	XPC (ENSAMEG00000009407) #17	LSM3 (ENSAMEG00000009405) #18	SLC6A6 (ENSAMEG00000009329) #20	GRIP2 (ENSAMEG00000009300) #21	CCDC174 (ENSAMEG00000009271) #22	C3orf20 (ENSAMEG00000009263) #23	FGD5 (ENSAMEG00000009227) #24	NR2C2 (ENSAMEG00000004318) #25	MRPS25 (ENSAMEG00000027927) #27	ENSAMEG00000004361 #28	TRH (ENSAMEG00000025033) #29	TMCC1 (ENSAMEG00000004384) #31	PLXND1 (ENSAMEG00000004387) #32	H1-8 (ENSAMEG00000004448) #36	RHO (ENSAMEG00000004453) #34	IFT122 (ENSAMEG00000004471) #37	ENSAMEG00000030948	MBD4 (ENSAMEG00000004562)	ENSAMEG00000004574	RPL32 (ENSAMEG00000004583)
Canidae	ANCESTRAL SPECIES		ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000162932.o	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT00390000010054.a.e	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951.eb #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.a.b	ENSGT00390000017740.a.b #7
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000162932.o	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT00390000010054.a.e	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951.eb #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00950000183087.A.a.a.b.p.a.a	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.a.b
Dog	MODERN SPECIES	12	ENSCAFG00845021518	ENSCAFG00845021688 #9	ENSCAFG00845022488 #10	ENSCAFG00845022870 #11	FBLN2 (ENSCAFG00845023226) #12	BEX4 (ENSCAFG00845023625)	WNT7A (ENSCAFG00845023657) #13	ENSCAFG00845023700	ENSCAFG00845023722	XPC (ENSCAFG00845023793) #17	CHCHD4 (ENSCAFG00845023967) #16	TMEM43 (ENSCAFG00845024053) #14	LSM3 (ENSCAFG00845024243) #18	SLC6A6 (ENSCAFG00845024299) #20	GRIP2 (ENSCAFG00845024472) #21	CCDC174 (ENSCAFG00845025324) #22	C3orf20 (ENSCAFG00845025479) #23	FGD5 (ENSCAFG00845025740) #24	NR2C2 (ENSCAFG00845026116) #25	MRPS25 (ENSCAFG00845026361) #27	ENSCAFG00845026464 #28	TRH (ENSCAFG00845026628) #29	ENSCAFG00845026667	TMCC1 (ENSCAFG00845026698) #31	RPL26 (ENSCAFG00845026761)	PLXND1 (ENSCAFG00845026992) #32	H1-8 (ENSCAFG00845027541) #36	RHO (ENSCAFG00845027581) #34	IFT122 (ENSCAFG00845027707) #37	MBD4 (ENSCAFG00845028304)	ENSCAFG00845028379
Dingo	MODERN SPECIES	236	ACAD9 (ENSCAFG00020004917)	IQSEC1 (ENSCAFG00020004925) #9	NUP210 (ENSCAFG00020004962) #10	HDAC11 (ENSCAFG00020005611) #11	FBLN2 (ENSCAFG00020005625) #12	ENSCAFG00020005637	WNT7A (ENSCAFG00020005641) #13	ENSCAFG00020005651	ENSCAFG00020005677	CHCHD4 (ENSCAFG00020005681) #16	TMEM43 (ENSCAFG00020005686) #14	XPC (ENSCAFG00020005688) #17	ENSCAFG00020005692	SLC6A6 (ENSCAFG00020005700) #20	GRIP2 (ENSCAFG00020005863) #21	CCDC174 (ENSCAFG00020006016) #22	C3orf20 (ENSCAFG00020006113) #23	FGD5 (ENSCAFG00020006160) #24	NR2C2 (ENSCAFG00020006182) #25	MRPS25 (ENSCAFG00020006345) #27	RBSN (ENSCAFG00020006347) #28	TRH (ENSCAFG00020006350) #29	ENSCAFG00020006352	ENSCAFG00020006358	ENSCAFG00020006362 #31	ENSCAFG00020006372 #31	PLXND1 (ENSCAFG00020006389) #32	H1-8 (ENSCAFG00020006486) #36	RHO (ENSCAFG00020006492) #34	IFT122 (ENSCAFG00020006537) #37	MBD4 (ENSCAFG00020007082)
Red fox	MODERN SPECIES	130														SLC6A6 (ENSVVUG00000013760) #20	GRIP2 (ENSVVUG00000013780) #21	CCDC174 (ENSVVUG00000013811) #22	C3orf20 (ENSVVUG00000013813) #23	FGD5 (ENSVVUG00000013818) #24	NR2C2 (ENSVVUG00000013819) #25	ENSVVUG00000013842	MRPS25 (ENSVVUG00000013846) #27	RBSN (ENSVVUG00000013853) #28	TRH (ENSVVUG00000013865) #29	TMCC1 (ENSVVUG00000013886) #31	PLXND1 (ENSVVUG00000013916) #32	H1-8 (ENSVVUG00000014145) #36	RHO (ENSVVUG00000014149) #34	IFT122 (ENSVVUG00000014184) #37	MBD4 (ENSVVUG00000014222)	EFCAB12 (ENSVVUG00000014226)	RPL32 (ENSVVUG00000014231)
Felidae	ANCESTRAL SPECIES	17	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.y.a.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00500000045038.m.b	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000017740.a.b #7
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000007219	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.y.a.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00500000045038.m.b	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000017740.a.b #7
Tiger	MODERN SPECIES	421					ENSPTIG00000021360 #10	HDAC11 (ENSPTIG00000020186) #11	FBLN2 (ENSPTIG00000018231) #12	WNT7A (ENSPTIG00000017156) #13	ENSPTIG00000016568	CHCHD4 (ENSPTIG00000016341) #16	TMEM43 (ENSPTIG00000014059) #14	XPC (ENSPTIG00000013279) #17	LSM3 (ENSPTIG00000013072) #18	SLC6A6 (ENSPTIG00000012115) #20	GRIP2 (ENSPTIG00000011516) #21	CCDC174 (ENSPTIG00000010750) #22	C3orf20 (ENSPTIG00000008193) #23	FGD5 (ENSPTIG00000000044) #24	NR2C2 (ENSPTIG00000017630) #25	MRPS25 (ENSPTIG00000016698) #27	RBSN (ENSPTIG00000016511) #28	TRH (ENSPTIG00000016436) #29	ENSPTIG00000016325 #31
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000007219	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132.y.a.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00500000045038.m.b	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000017740.a.b #7
lion	MODERN SPECIES	2	GP9 (ENSPLOG00000003607)	EFCC1 (ENSPLOG00000003589)	CFAP92 (ENSPLOG00000003557)	ACAD9 (ENSPLOG00000003509)	ENSPLOG00000003482 #10	HDAC11 (ENSPLOG00000003423) #11	FBLN2 (ENSPLOG00000003304) #12	WNT7A (ENSPLOG00000003262) #13	ENSPLOG00000003237 #16	TMEM43 (ENSPLOG00000003216) #14	XPC (ENSPLOG00000003191) #17	LSM3 (ENSPLOG00000003173) #18	ENSPLOG00000003139	SLC6A6 (ENSPLOG00000003114) #20	GRIP2 (ENSPLOG00000003035) #21	CCDC174 (ENSPLOG00000002974) #22	C3orf20 (ENSPLOG00000002933) #23	FGD5 (ENSPLOG00000002817) #24	NR2C2 (ENSPLOG00000002757) #25	MRPS25 (ENSPLOG00000002725) #27	RBSN (ENSPLOG00000002563) #28	TRH (ENSPLOG00000002548) #29	TMCC1 (ENSPLOG00000002518) #31	PLXND1 (ENSPLOG00000002460) #32	H1-8 (ENSPLOG00000002423) #36	RHO (ENSPLOG00000002405) #34	IFT122 (ENSPLOG00000002159) #37	MBD4 (ENSPLOG00000002021)	EFCAB12 (ENSPLOG00000001903)	RPL32 (ENSPLOG00000001870)	CAND2 (ENSPLOG00000001847) #7
leopard	MODERN SPECIES	154				ENSPPRG00000010029 #10	HDAC11 (ENSPPRG00000010530) #11	FBLN2 (ENSPPRG00000012713) #12	WNT7A (ENSPPRG00000012734) #13	ENSPPRG00000012751	ENSPPRG00000012762 #16	TMEM43 (ENSPPRG00000012773) #14	XPC (ENSPPRG00000012784) #17	ENSPPRG00000012912 #18	ENSPPRG00000012913	SLC6A6 (ENSPPRG00000013003) #20	GRIP2 (ENSPPRG00000013151) #21	CCDC174 (ENSPPRG00000013291) #22	C3orf20 (ENSPPRG00000013356) #23	FGD5 (ENSPPRG00000013574) #24	NR2C2 (ENSPPRG00000013873) #25	MRPS25 (ENSPPRG00000013901) #27	RBSN (ENSPPRG00000013941) #28	TRH (ENSPPRG00000013952) #29	TMCC1 (ENSPPRG00000014113) #31	PLXND1 (ENSPPRG00000014283) #32	H1-8 (ENSPPRG00000014444) #36	RHO (ENSPPRG00000014471) #34	ENSPPRG00000014504	IFT122 (ENSPPRG00000015865) #37	MBD4 (ENSPPRG00000016480)	EFCAB12 (ENSPPRG00000016816)	RPL32 (ENSPPRG00000016964)
Cat	MODERN SPECIES	1	ENSFCAG00000046514	CFAP92 (ENSFCAG00000044668)	ACAD9 (ENSFCAG00000008660)	IQSEC1 (ENSFCAG00000013910) #9	NUP210 (ENSFCAG00000007505) #10	HDAC11 (ENSFCAG00000007506) #11	FBLN2 (ENSFCAG00000007507) #12	WNT7A (ENSFCAG00000044055) #13	ENSFCAG00000041881 #16	TMEM43 (ENSFCAG00000001863) #14	XPC (ENSFCAG00000001865) #17	ENSFCAG00000038453 #18	ENSFCAG00000036915	SLC6A6 (ENSFCAG00000007651) #20	GRIP2 (ENSFCAG00000007655) #21	CCDC174 (ENSFCAG00000027124) #22	CA2H3orf20 (ENSFCAG00000007658) #23	FGD5 (ENSFCAG00000026112) #24	NR2C2 (ENSFCAG00000003537) #25	MRPS25 (ENSFCAG00000027687) #27	RBSN (ENSFCAG00000025901) #28	TRH (ENSFCAG00000029423) #29	TMCC1 (ENSFCAG00000027586) #31	PLXND1 (ENSFCAG00000000095) #32	H1-8 (ENSFCAG00000000094) #36	RHO (ENSFCAG00000000092) #34	IFT122 (ENSFCAG00000000086) #37	MBD4 (ENSFCAG00000000083)	EFCAB12 (ENSFCAG00000000081)	RPL32 (ENSFCAG00000030450)	CAND2 (ENSFCAG00000008340) #7
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132.z #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d	ENSGT00940000153973.d
Equus	ANCESTRAL SPECIES	5	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b.f	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132.z #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583.l #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00940000153973.d	ENSGT00390000017740.a.b #7	ENSGT00390000017530
Donkey	MODERN SPECIES	13	ENSEASG00005023789	ENSEASG00005015789 #9	NUP210 (ENSEASG00005015493) #10	HDAC11 (ENSEASG00005015454) #11	FBLN2 (ENSEASG00005015453) #12	WNT7A (ENSEASG00005026827) #13	ENSEASG00005015785	ENSEASG00005024080	ENSEASG00005015447	CHCHD4 (ENSEASG00005015446) #16	TMEM43 (ENSEASG00005015445) #14	XPC (ENSEASG00005015444) #17	LSM3 (ENSEASG00005034598) #18	SLC6A6 (ENSEASG00005015439) #20	GRIP2 (ENSEASG00005015437) #21	CCDC174 (ENSEASG00005015436) #22	C3orf20 (ENSEASG00005015430) #23	FGD5 (ENSEASG00005015426) #24	ENSEASG00005015425	NR2C2 (ENSEASG00005015422) #25	ENSEASG00005015419 #27	ENSEASG00005015384 #28	ENSEASG00005015376 #29	TMCC1 (ENSEASG00005015373) #31	PLXND1 (ENSEASG00005015351) #32	H1-8 (ENSEASG00005025925) #36	RHO (ENSEASG00005015347) #34	IFT122 (ENSEASG00005014840) #37	MBD4 (ENSEASG00005014800)	ENSEASG00005014792	CAND2 (ENSEASG00005014788) #7
Horse	MODERN SPECIES	7	IQSEC1 (ENSECAG00000023717) #9	ENSECAG00000037764	NUP210 (ENSECAG00000009171) #10	HDAC11 (ENSECAG00000002905) #11	FBLN2 (ENSECAG00000008859) #12	WNT7A (ENSECAG00000009213) #13	ENSECAG00000058098	ENSECAG00000048396	ENSECAG00000014121	CHCHD4 (ENSECAG00000002378) #16	TMEM43 (ENSECAG00000005661) #14	XPC (ENSECAG00000015499) #17	LSM3 (ENSECAG00000007803) #18	SLC6A6 (ENSECAG00000012750) #20	GRIP2 (ENSECAG00000013613) #21	CCDC174 (ENSECAG00000000540) #22	ENSECAG00000049631	C16H3orf20 (ENSECAG00000013357) #23	FGD5 (ENSECAG00000016458) #24	NR2C2 (ENSECAG00000003791) #25	MRPS25 (ENSECAG00000020841) #27	RBSN (ENSECAG00000021486) #28	TRH (ENSECAG00000006178) #29	TMCC1 (ENSECAG00000006725) #31	PLXND1 (ENSECAG00000009159) #32	H1-8 (ENSECAG00000013614) #36	RHO (ENSECAG00000013709) #34	IFT122 (ENSECAG00000015360) #37	MBD4 (ENSECAG00000022106)	CAND2 (ENSECAG00000010515) #7	RPL32 (ENSECAG00000049946)
Chiroptera	ANCESTRAL SPECIES	54										ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000017740.a.b #7
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00940000154369.d	ENSGT01030000234629.C	ENSGT00390000016324	ENSGT00940000161449	ENSGT00940000158201	ENSGT00940000155481	ENSGT00940000160511	ENSGT01030000234579.A.b	ENSGT00940000157909	ENSGT00390000013132.y.a #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000017740.a.b #7
Microbat	MODERN SPECIES	945	SLC25A36 (ENSMLUG00000001464)	SPSB4 (ENSMLUG00000001564)	PXYLP1 (ENSMLUG00000012502)	ZBTB38 (ENSMLUG00000012512)	RASA2 (ENSMLUG00000007834)	TFDP2 (ENSMLUG00000014707)	ENSMLUG00000007878	GRK7 (ENSMLUG00000030484)	ATP1B3 (ENSMLUG00000011339)	ENSMLUG00000010633 #16	TMEM43 (ENSMLUG00000010638) #14	XPC (ENSMLUG00000010655) #17	LSM3 (ENSMLUG00000010677) #18	SLC6A6 (ENSMLUG00000003862) #20	GRIP2 (ENSMLUG00000003868) #21	CCDC174 (ENSMLUG00000010390) #22	C3orf20 (ENSMLUG00000010404) #23	FGD5 (ENSMLUG00000010008) #24	NR2C2 (ENSMLUG00000010062) #25	ENSMLUG00000017504 #27	RBSN (ENSMLUG00000010088) #28	TRH (ENSMLUG00000007249) #29	TMCC1 (ENSMLUG00000016755) #31	PLXND1 (ENSMLUG00000014790) #32	ENSMLUG00000025226 #36	RHO (ENSMLUG00000014786) #34	IFT122 (ENSMLUG00000014771) #37	MBD4 (ENSMLUG00000014766)	ENSMLUG00000014759	RPL32 (ENSMLUG00000022528)	CAND2 (ENSMLUG00000006333) #7
Greater horseshoe bat	MODERN SPECIES	8	SPSB4 (ENSRFEG00010014088)	PXYLP1 (ENSRFEG00010014126)	ZBTB38 (ENSRFEG00010014220)	RASA2 (ENSRFEG00010014242)	ENSRFEG00010014323	RNF7 (ENSRFEG00010014386)	ATP1B3 (ENSRFEG00010014478)	ENSRFEG00010014549	CHCHD4 (ENSRFEG00010015265) #16	TMEM43 (ENSRFEG00010015322) #14	XPC (ENSRFEG00010015501) #17	LSM3 (ENSRFEG00010015559) #18	SLC6A6 (ENSRFEG00010015647) #20	GRIP2 (ENSRFEG00010015722) #21	ENSRFEG00010016101	CCDC174 (ENSRFEG00010016163) #22	C3orf20 (ENSRFEG00010016242) #23	FGD5 (ENSRFEG00010016481) #24	NR2C2 (ENSRFEG00010017049) #25	ENSRFEG00010017258	MRPS25 (ENSRFEG00010017280) #27	RBSN (ENSRFEG00010017337) #28	TRH (ENSRFEG00010017403) #29	ENSRFEG00010017442	TMCC1 (ENSRFEG00010017473) #31	PLXND1 (ENSRFEG00010017592) #32	RHO (ENSRFEG00010017659) #34	IFT122 (ENSRFEG00010017745) #37	MBD4 (ENSRFEG00010018007)	EFCAB12 (ENSRFEG00010018070)	RPL32 (ENSRFEG00010018162)
Megabat	MODERN SPECIES	4174																CCDC174 (ENSPVAG00000011840) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00440000033958 #22
Common shrew	MODERN SPECIES	3818																ENSSARG00000004489 #22
Hedgehog	MODERN SPECIES	4949																ENSEEUG00000004005 #22
Atlantogenata	ANCESTRAL SPECIES	34	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT01030000234553.b.b.d.c.b	ENSGT01030000234553.b.b.d.d	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b	ENSGT00940000153973.c.a.a
Xenarthra	ANCESTRAL SPECIES	628														ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28
Sloth	MODERN SPECIES	4402																CCDC174 (ENSCHOG00000005203) #22	C3orf20 (ENSCHOG00000005218) #23
Armadillo	MODERN SPECIES	4754													SLC6A6 (ENSDNOG00000047566) #20	GRIP2 (ENSDNOG00000046149) #21	ENSDNOG00000048955	CCDC174 (ENSDNOG00000044545) #22	FGD5 (ENSDNOG00000037043) #24	NR2C2 (ENSDNOG00000006388) #25	ENSDNOG00000048066 #27
Afrotheria	ANCESTRAL SPECIES	32	ENSGT00950000183014.f.b.a.b	ENSGT00390000007219	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Afrotheria_a	ANCESTRAL SPECIES	32	ENSGT00950000183014.f.b.a.b	ENSGT00390000007219	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #9	ENSGT00390000009491.d #10	ENSGT00940000156308 #11	ENSGT00940000156047 #12	ENSGT00940000158523 #13	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a	ENSGT00390000014874	ENSGT00940000153973.c.a.a	ENSGT00390000017740.a.b #7
Elephant	MODERN SPECIES	49	ENSLAFG00000028660	ENSLAFG00000014529	ENSLAFG00000008454	ACAD9 (ENSLAFG00000008449)	IQSEC1 (ENSLAFG00000017531) #9	NUP210 (ENSLAFG00000000497) #10	HDAC11 (ENSLAFG00000000504) #11	FBLN2 (ENSLAFG00000013555) #12	WNT7A (ENSLAFG00000001335) #13	CHCHD4 (ENSLAFG00000018489) #16	TMEM43 (ENSLAFG00000006731) #14	XPC (ENSLAFG00000022512) #17	LSM3 (ENSLAFG00000023308) #18	SLC6A6 (ENSLAFG00000015145) #20	GRIP2 (ENSLAFG00000032264) #21	CCDC174 (ENSLAFG00000012663) #22	C3orf20 (ENSLAFG00000015670) #23	FGD5 (ENSLAFG00000010491) #24	NR2C2 (ENSLAFG00000010224) #25	MRPS25 (ENSLAFG00000022178) #27	RBSN (ENSLAFG00000004227) #28	TRH (ENSLAFG00000015165) #29	TMCC1 (ENSLAFG00000013730) #31	PLXND1 (ENSLAFG00000003012) #32	RHO (ENSLAFG00000001359) #34	IFT122 (ENSLAFG00000010612) #37	MBD4 (ENSLAFG00000010609)	EFCAB12 (ENSLAFG00000010605)	ENSLAFG00000032737	CAND2 (ENSLAFG00000017706) #7	TMEM40 (ENSLAFG00000010230)
Hyrax	MODERN SPECIES	8261																CCDC174 (ENSPCAG00000009016) #22
Tenrec	MODERN SPECIES	4774																ENSETEG00000016781 #22
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00940000159178	ENSGT00940000161154	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000164258	ENSGT00390000015136	ENSGT00940000165132	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00510000050664	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a.b	ENSGT00530000063687.a.a	ENSGT00390000014874
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00940000159178	ENSGT00940000161154	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000164258	ENSGT00390000015136	ENSGT00940000165132	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000153655.B #23	ENSGT00940000157922 #24	ENSGT00510000050664	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT00940000160900 #36	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a.b	ENSGT00530000063687.a.a	ENSGT00390000014874
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00940000159178	ENSGT00940000161154	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000164258	ENSGT00390000015136	ENSGT00940000165132	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000157922 #24	ENSGT00510000050664	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a.b	ENSGT00530000063687.a.a	ENSGT00390000014874	ENSGT00940000153973	ENSGT00390000017740.a.b #7
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00940000159178	ENSGT00940000161154	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000164258	ENSGT00390000015136	ENSGT00940000165132	ENSGT00390000013132 #16	ENSGT00390000009671 #14	ENSGT00390000005194 #17	ENSGT00390000013951 #18	ENSGT00940000154583 #20	ENSGT00940000155615 #21	ENSGT00440000033958 #22	ENSGT00940000157922 #24	ENSGT00510000050664	ENSGT00940000158393 #25	ENSGT00640000091558 #27	ENSGT00390000007159 #28	ENSGT00390000016951 #29	ENSGT00940000155189 #31	ENSGT01020000230394.e.b.a #32	ENSGT01030000234549.a.a.a.a.a.b.b #34	ENSGT00390000001016.b #37	ENSGT00530000063687.a.b	ENSGT00530000063687.a.a	ENSGT00390000014874	ENSGT00940000153973	ENSGT00390000017740.a.b #7
Common wonbat	MODERN SPECIES	1012	TXNRD3 (ENSVURG00010016171)	CHST13 (ENSVURG00010016165)	SLC41A3 (ENSVURG00010016155)	ALDH1L1 (ENSVURG00010016140)	KLF15 (ENSVURG00010016133)	ENSVURG00010016102	ENSVURG00010015824	UROC1 (ENSVURG00010015797)	ENSVURG00010015780	CHCHD4 (ENSVURG00010015776) #16	TMEM43 (ENSVURG00010015761) #14	XPC (ENSVURG00010015746) #17	ENSVURG00010015743 #18	SLC6A6 (ENSVURG00010015726) #20	GRIP2 (ENSVURG00010014963) #21	CCDC174 (ENSVURG00010014898) #22	FGD5 (ENSVURG00010014863) #24	ENSVURG00010014858	NR2C2 (ENSVURG00010014575) #25	MRPS25 (ENSVURG00010014548) #27	RBSN (ENSVURG00010014533) #28	TMCC1 (ENSVURG00010014518) #31	PLXND1 (ENSVURG00010014456) #32	RHO (ENSVURG00010014434) #34	IFT122 (ENSVURG00010014263) #37	ENSVURG00010014225	ENSVURG00010014212	ENSVURG00010014192	CAND2 (ENSVURG00010013279) #7	TMEM40 (ENSVURG00010013215)	RAF1 (ENSVURG00010013196)
koala	MODERN SPECIES	10	TXNRD3 (ENSPCIG00000007513)	CHST13 (ENSPCIG00000031809)	SLC41A3 (ENSPCIG00000030893)	ALDH1L1 (ENSPCIG00000007535)	KLF15 (ENSPCIG00000007539)	CFAP100 (ENSPCIG00000007541)	ENSPCIG00000007546	UROC1 (ENSPCIG00000007560)	ENSPCIG00000007553	ENSPCIG00000007567 #16	TMEM43 (ENSPCIG00000007570) #14	XPC (ENSPCIG00000007579) #17	LSM3 (ENSPCIG00000036405) #18	SLC6A6 (ENSPCIG00000025392) #20	GRIP2 (ENSPCIG00000024617) #21	ENSPCIG00000014781 #22	FGD5 (ENSPCIG00000023533) #24	NR2C2 (ENSPCIG00000023531) #25	ENSPCIG00000023530 #27	RBSN (ENSPCIG00000023528) #28	ENSPCIG00000023527 #29	TMCC1 (ENSPCIG00000002496) #31	PLXND1 (ENSPCIG00000002459) #32	RHO (ENSPCIG00000002359) #34	IFT122 (ENSPCIG00000002304) #37	ENSPCIG00000035263	ENSPCIG00000002276	ENSPCIG00000002263	RPL32 (ENSPCIG00000036095)	CAND2 (ENSPCIG00000002229) #7	TMEM40 (ENSPCIG00000002215)
Wallaby	MODERN SPECIES	6037																CCDC174 (ENSMEUG00000008447) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000011983	ENSSHAG00000011415	ENSSHAG00000010624	ALDH1L1 (ENSSHAG00000009971)	KLF15 (ENSSHAG00000007635)	ENSSHAG00000006525	ENSSHAG00000006236	ENSSHAG00000004989	ENSSHAG00000003679	ENSSHAG00000021201 #16	TMEM43 (ENSSHAG00000029957) #14	XPC (ENSSHAG00000001194) #17	LSM3 (ENSSHAG00000031935) #18	SLC6A6 (ENSSHAG00000017858) #20	GRIP2 (ENSSHAG00000017717) #21	CCDC174 (ENSSHAG00000017233) #22	ENSSHAG00000017083 #23	FGD5 (ENSSHAG00000016383) #24	ENSSHAG00000024996	NR2C2 (ENSSHAG00000016078) #25	ENSSHAG00000015988 #28	ENSSHAG00000026312 #29	TMCC1 (ENSSHAG00000014733) #31	PLXND1 (ENSSHAG00000013651) #32	ENSSHAG00000029482 #36	RHO (ENSSHAG00000013534) #34	IFT122 (ENSSHAG00000013078) #37	MBD4 (ENSSHAG00000012953)	ENSSHAG00000012822	ENSSHAG00000012782	CAND2 (ENSSHAG00000012567) #7
Opossum	MODERN SPECIES	5	SLC41A3 (ENSMODG00000007626)	ALDH1L1 (ENSMODG00000007603)	ENSMODG00000051161	ENSMODG00000007452	ENSMODG00000007443	UROC1 (ENSMODG00000007413)	ENSMODG00000007369	ENSMODG00000007319 #16	TMEM43 (ENSMODG00000007313) #14	XPC (ENSMODG00000007289) #17	LSM3 (ENSMODG00000007275) #18	ENSMODG00000028241	SLC6A6 (ENSMODG00000007269) #20	ENSMODG00000007232 #21	ENSMODG00000038869 #21	CCDC174 (ENSMODG00000007181) #22	ENSMODG00000046894 #23	FGD5 (ENSMODG00000007131) #24	ENSMODG00000028915	NR2C2 (ENSMODG00000007047) #25	MRPS25 (ENSMODG00000007018) #27	RBSN (ENSMODG00000007011) #28	ENSMODG00000028708 #29	ENSMODG00000042057	ENSMODG00000044035	TMCC1 (ENSMODG00000006987) #31	PLXND1 (ENSMODG00000006963) #32	ENSMODG00000028422 #36	RHO (ENSMODG00000006488) #34	IFT122 (ENSMODG00000006462) #37	ENSMODG00000042737