Rodentia_A ANCESTRAL SPECIES 24 ENSGT01050000244965.b ENSGT00940000158366 ENSGT00940000156627 #7 ENSGT01100000263524.I #8 ENSGT00730000111223 #9 ENSGT00930000151042 #10 ENSGT00390000008798.c #11 ENSGT00940000155140 #12 ENSGT00940000158059 #13 ENSGT00950000182924.B.a.a #14 ENSGT00940000159823 #17 ENSGT00940000157910 #18 ENSGT00390000001376 #19 ENSGT00390000008294.f #20 ENSGT00390000008294.e.b.a.a ##20 ENSGT00940000159660 #22 ENSGT00940000159984 #23 ENSGT00940000157714 #24 ENSGT00940000157370 #25 ENSGT00390000009613.b #26 ENSGT00940000162188 #27 ENSGT00530000069080 #28 ENSGT00940000154950 #29 ENSGT00940000158244 ENSGT00930000150973.B #31 ENSGT00390000004446 #32 ENSGT00390000005218 #33 ENSGT00950000183088.a.b.b #35 ENSGT00390000017004.a.a ENSGT00940000160003 ENSGT00940000154108.b.a.a Hystricomorpha ANCESTRAL SPECIES 38 ENSGT01050000244965.b ENSGT00940000158366 ENSGT00940000156627 #7 ENSGT01100000263524.I #8 ENSGT00730000111223 #9 ENSGT00930000151042 #10 ENSGT00390000008798.c #11 ENSGT00940000155140 #12 ENSGT00940000158059 #13 ENSGT00950000182924.B.a.a #14 ENSGT00940000159823 #17 ENSGT00940000157910 #18 ENSGT00390000001376 #19 ENSGT00390000008294.f #20 ENSGT00390000008294.e.b.a.a ##20 ENSGT00940000159660 #22 ENSGT00940000159984 #23 ENSGT00940000157714 #24 ENSGT00940000157370 #25 ENSGT00390000009613.b #26 ENSGT00940000162188 #27 ENSGT00530000069080 #28 ENSGT00940000154950 #29 ENSGT00940000158244 ENSGT00930000150973.B #31 ENSGT00390000004446 #32 ENSGT00390000005218 #33 ENSGT00950000183088.a.b.b #35 ENSGT00390000017004.a.a ENSGT00940000160003 ENSGT00940000154108.b.a.a Hystricomorpha_a ANCESTRAL SPECIES 34 ENSGT00940000156946 ENSGT01050000244965.b ENSGT00940000158366 ENSGT00940000156627 #7 ENSGT01100000263524.I #8 ENSGT00730000111223 #9 ENSGT00930000151042 #10 ENSGT00390000008798.c #11 ENSGT00940000155140 #12 ENSGT00940000158059 #13 ENSGT00950000182924.B.a.a #14 ENSGT00940000159823 #17 ENSGT00940000157910 #18 ENSGT00390000001376 #19 ENSGT00390000008294.e.b.a.a ##20 ENSGT00940000159660 #22 ENSGT00940000159984 #23 ENSGT00940000157714 #24 ENSGT00940000157370 #25 ENSGT00390000009613.b #26 ENSGT00940000162188 #27 ENSGT00530000069080 #28 ENSGT00940000154950 #29 ENSGT00940000158244 ENSGT00930000150973.B #31 ENSGT00390000004446 #32 ENSGT00390000005218 #33 ENSGT00950000183088.a.b.b #35 ENSGT00390000017004.a.a ENSGT00940000160003 ENSGT00940000154108.b.a.a Hystricomorpha_b ANCESTRAL SPECIES 52 ENSGT01050000244965.b ENSGT00940000158366 ENSGT00940000156627 #7 ENSGT01100000263524.I #8 ENSGT00730000111223 #9 ENSGT00930000151042 #10 ENSGT00390000008798.c #11 ENSGT00940000155140 #12 ENSGT00940000158059 #13 ENSGT00950000182924.B.a.a #14 ENSGT00940000159823 #17 ENSGT00940000157910 #18 ENSGT00390000001376 #19 ENSGT00390000008294.f #20 ENSGT00390000008294.e.b.a.a ##20 ENSGT00940000159660 #22 ENSGT00940000159984 #23 ENSGT00940000157714 #24 ENSGT00940000157370 #25 ENSGT00390000009613.b #26 ENSGT00940000162188 #27 ENSGT00530000069080 #28 ENSGT00940000154950 #29 ENSGT00940000158244 ENSGT00930000150973.B #31 ENSGT00390000004446 #32 ENSGT00390000005218 #33 ENSGT00950000183088.a.b.b #35 ENSGT00390000017004.a.a ENSGT00940000160003 ENSGT00940000154108.b.a.a Degu MODERN SPECIES 57 LRIT3 (ENSODEG00000014302) #7 RRH (ENSODEG00000010773) #8 GAR1 (ENSODEG00000011083) #9 CFI (ENSODEG00000010069) #10 ENSODEG00000011603 #11 CASP6 (ENSODEG00000010252) #12 MCUB (ENSODEG00000010641) #13 SEC24B (ENSODEG00000011940) #14 ENSODEG00000019962 #15 ENSODEG00000011204 #16 COL25A1 (ENSODEG00000011565) #17 ETNPPL (ENSODEG00000011007) #18 OSTC (ENSODEG00000011874) #19 ENSODEG00000012716 #20 ENSODEG00000019987 #21 LEF1 (ENSODEG00000010436) #22 HADH (ENSODEG00000011168) #23 CYP2U1 (ENSODEG00000010344) #24 SGMS2 (ENSODEG00000010387) #25 PAPSS1 (ENSODEG00000012464) #26 DKK2 (ENSODEG00000013005) #27 GIMD1 (ENSODEG00000011081) #28 ENSODEG00000010617 #29 ENSODEG00000011791 #30 NPNT (ENSODEG00000012616) #31 GSTCD (ENSODEG00000011298) #32 INTS12 (ENSODEG00000010716) #33 ENSODEG00000011418 #34 ENSODEG00000010989 #35 ENSODEG00000011526 #36 ENSODEG00000012068 #37 Long-tailed chinchilla MODERN SPECIES 203 ELOVL6 (ENSCLAG00000003163) EGF (ENSCLAG00000003331) LRIT3 (ENSCLAG00000004694) #7 RRH (ENSCLAG00000005130) #8 GAR1 (ENSCLAG00000005335) #9 CFI (ENSCLAG00000006216) #10 PLA2G12A (ENSCLAG00000006595) #11 CASP6 (ENSCLAG00000003293) #12 MCUB (ENSCLAG00000003597) #13 SEC24B (ENSCLAG00000004027) #14 ENSCLAG00000002421 COL25A1 (ENSCLAG00000002719) #17 ETNPPL (ENSCLAG00000002982) #18 OSTC (ENSCLAG00000003790) #19 ENSCLAG00000003911 ##20 LEF1 (ENSCLAG00000003044) #22 HADH (ENSCLAG00000003966) #23 CYP2U1 (ENSCLAG00000002674) #24 SGMS2 (ENSCLAG00000002723) #25 PAPSS1 (ENSCLAG00000002840) #26 DKK2 (ENSCLAG00000002881) #27 GIMD1 (ENSCLAG00000003485) #28 AIMP1 (ENSCLAG00000003954) #29 TBCK (ENSCLAG00000004392) NPNT (ENSCLAG00000002301) #31 GSTCD (ENSCLAG00000002751) #32 INTS12 (ENSCLAG00000003066) #33 ARHGEF38 (ENSCLAG00000003103) #35 PPA2 (ENSCLAG00000004964) TET2 (ENSCLAG00000005412) ENSCLAG00000005638 Guinea pig MODERN SPECIES 43 ELOVL6 (ENSCPOG00000038802) EGF (ENSCPOG00000000779) LRIT3 (ENSCPOG00000000776) #7 RRH (ENSCPOG00000004217) #8 GAR1 (ENSCPOG00000004216) #9 CFI (ENSCPOG00000004214) #10 PLA2G12A (ENSCPOG00000004212) #11 CASP6 (ENSCPOG00000031434) #12 ENSCPOG00000002110 #13 ENSCPOG00000022594 SEC24B (ENSCPOG00000009212) #14 COL25A1 (ENSCPOG00000012595) #17 ETNPPL (ENSCPOG00000015368) #18 OSTC (ENSCPOG00000039456) #19 ENSCPOG00000037181 ##20 LEF1 (ENSCPOG00000013758) #22 HADH (ENSCPOG00000024229) #23 CYP2U1 (ENSCPOG00000011750) #24 SGMS2 (ENSCPOG00000032233) #25 PAPSS1 (ENSCPOG00000011505) #26 DKK2 (ENSCPOG00000030616) #27 AIMP1 (ENSCPOG00000006734) #29 TBCK (ENSCPOG00000006708) NPNT (ENSCPOG00000006697) #31 GSTCD (ENSCPOG00000008688) #32 INTS12 (ENSCPOG00000009129) #33 ENSCPOG00000039865 #35 ENSCPOG00000024558 #35 ENSCPOG00000023083 PPA2 (ENSCPOG00000012683) TET2 (ENSCPOG00000005784) Naked mole-rat female MODERN SPECIES 19 ENSHGLG00000003109 ENSHGLG00000001432 #14 ENSHGLG00000000975 #13 CASP6 (ENSHGLG00000000729) #12 PLA2G12A (ENSHGLG00000000692) #11 GAR1 (ENSHGLG00000000493) #9 RRH (ENSHGLG00000004643) #8 ENSHGLG00000002404 ENSHGLG00000034086 ELOVL6 (ENSHGLG00000037368) ENPEP (ENSHGLG00000002965) ENSHGLG00000047113 ENSHGLG00000004469 #18 ENSHGLG00000001959 #19 RPL34 (ENSHGLG00000050296) #20 LEF1 (ENSHGLG00000046551) #22 HADH (ENSHGLG00000032988) #23 ENSHGLG00000038714 #24 PAPSS1 (ENSHGLG00000001783) #26 ENSHGLG00000044153 DKK2 (ENSHGLG00000032510) #27 GIMD1 (ENSHGLG00000003404) #28 AIMP1 (ENSHGLG00000003860) #29 TBCK (ENSHGLG00000008209) ENSHGLG00000034242 NPNT (ENSHGLG00000001987) #31 GSTCD (ENSHGLG00000001718) #32 ENSHGLG00000050195 INTS12 (ENSHGLG00000002096) #33 ARHGEF38 (ENSHGLG00000034470) #35 ENSHGLG00000001427 #35 Sciuridae ANCESTRAL SPECIES 43 ENSGT00940000156946 ENSGT01050000244965.b ENSGT00940000158366 ENSGT00940000156627 #7 ENSGT01100000263524.I #8 ENSGT00730000111223 #9 ENSGT00930000151042 #10 ENSGT00390000008798.c #11 ENSGT00940000155140 #12 ENSGT00940000158059 #13 ENSGT00950000182924.B.a.a #14 ENSGT00940000159823 #17 ENSGT00940000157910 #18 ENSGT00390000001376 #19 ENSGT00390000008294.e.b.a.b ##20 ENSGT00940000159660 #22 ENSGT00940000159984 #23 ENSGT00940000157714 #24 ENSGT00940000157370 #25 ENSGT00390000009613.b #26 ENSGT00940000162188 #27 ENSGT00530000069080 #28 ENSGT00940000154950 #29 ENSGT00940000158244 ENSGT00930000150973.B #31 ENSGT00390000004446 #32 ENSGT00390000005218 #33 ENSGT00950000183088.a.b.b #35 ENSGT00390000017004.a.a ENSGT00940000160003 ENSGT00940000154108.b.a.a Marmotini ANCESTRAL SPECIES 51 ENSGT00940000156946 ENSGT01050000244965.b ENSGT00940000158366 ENSGT00940000156627 #7 ENSGT01100000263524.I #8 ENSGT00730000111223 #9 ENSGT00930000151042 #10 ENSGT00390000008798.c #11 ENSGT00940000155140 #12 ENSGT00940000158059 #13 ENSGT00950000182924.B.a.a #14 ENSGT00940000159823 #17 ENSGT00940000157910 #18 ENSGT00390000001376 #19 ENSGT00390000008294.f #20 ENSGT00940000159660 #22 ENSGT00940000159984.e #23 ENSGT00940000157714.g #24 ENSGT00940000157714.h #24 ENSGT00940000157370 #25 ENSGT00390000009613.b #26 ENSGT00940000162188 #27 ENSGT00530000069080 #28 ENSGT00940000154950 #29 ENSGT00940000158244 ENSGT00930000150973.B #31 ENSGT00390000004446 #32 ENSGT00390000005218 #33 ENSGT00950000183088.a.b.b #35 ENSGT00390000017004.a.a ENSGT00940000160003 Alpin marmot MODERN SPECIES 14 ENSMMMG00000011001 ELOVL6 (ENSMMMG00000010968) EGF (ENSMMMG00000010685) ENSMMMG00000010673 LRIT3 (ENSMMMG00000010663) #7 RRH (ENSMMMG00000010634) #8 GAR1 (ENSMMMG00000010623) #9 CFI (ENSMMMG00000010613) #10 PLA2G12A (ENSMMMG00000010605) #11 CASP6 (ENSMMMG00000010597) #12 SEC24B (ENSMMMG00000010546) #14 COL25A1 (ENSMMMG00000010402) #17 ETNPPL (ENSMMMG00000010343) #18 OSTC (ENSMMMG00000010326) #19 RPL34 (ENSMMMG00000010314) #20 LEF1 (ENSMMMG00000010193) #22 ENSMMMG00000010164 #23 ENSMMMG00000010161 #24 ENSMMMG00000010155 #24 SGMS2 (ENSMMMG00000010143) #25 PAPSS1 (ENSMMMG00000010079) #26 DKK2 (ENSMMMG00000010025) #27 ENSMMMG00000009991 GIMD1 (ENSMMMG00000009944) #28 AIMP1 (ENSMMMG00000009938) #29 TBCK (ENSMMMG00000009872) NPNT (ENSMMMG00000009207) #31 GSTCD (ENSMMMG00000009168) #32 ENSMMMG00000009146 #33 ARHGEF38 (ENSMMMG00000009110) #35 PPA2 (ENSMMMG00000009033) Marmotini_b ANCESTRAL SPECIES 199 ENSGT00390000008294.e.b.a.a ##20 ENSGT00940000159660 #22 ENSGT00940000159984.e #23 ENSGT00940000157714.g #24 ENSGT00940000157714.h #24 ENSGT00940000157370 #25 ENSGT00390000009613.b #26 ENSGT00940000162188 #27 ENSGT00530000069080 #28 ENSGT00940000154950 #29 ENSGT00940000158244 ENSGT00930000150973.B #31 ENSGT00390000004446 #32 ENSGT00390000005218 #33 ENSGT00950000183088.a.b.b #35 ENSGT00390000017004.a.a ENSGT00940000160003 Arctic ground squirrel MODERN SPECIES 286 ENSUPAG00010008601 ##20 LEF1 (ENSUPAG00010008645) #22 ENSUPAG00010008957 #23 CYP2U1 (ENSUPAG00010008973) #24 SGMS2 (ENSUPAG00010008979) #25 PAPSS1 (ENSUPAG00010008992) #26 DKK2 (ENSUPAG00010009013) #27 GIMD1 (ENSUPAG00010009027) #28 AIMP1 (ENSUPAG00010009041) #29 TBCK (ENSUPAG00010009048) NPNT (ENSUPAG00010009088) #31 ENSUPAG00010009407 #32 Squirrel MODERN SPECIES 418 ENSSTOG00000021644 #19 RPL34 (ENSSTOG00000025964) ##20 LEF1 (ENSSTOG00000001371) #22 HADH (ENSSTOG00000001362) #23 CYP2U1 (ENSSTOG00000001353) #24 SGMS2 (ENSSTOG00000001349) #25 PAPSS1 (ENSSTOG00000009455) #26 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 18 LRIT3 (ENSSVLG00005025995) #7 RRH (ENSSVLG00005025996) #8 GAR1 (ENSSVLG00005025997) #9 CFI (ENSSVLG00005025998) #10 PLA2G12A (ENSSVLG00005025999) #11 ENSSVLG00005026000 #12 MCUB (ENSSVLG00005026001) #13 SEC24B (ENSSVLG00005026003) #14 ENSSVLG00005026004 COL25A1 (ENSSVLG00005026005) #17 ENSSVLG00005026006 ETNPPL (ENSSVLG00005026007) #18 OSTC (ENSSVLG00005026008) #19 RPL34 (ENSSVLG00005026009) ##20 ENSSVLG00005026011 ENSSVLG00005026012 #22 HADH (ENSSVLG00005026013) #23 CYP2U1 (ENSSVLG00005026014) #24 SGMS2 (ENSSVLG00005026015) #25 PAPSS1 (ENSSVLG00005026017) #26 DKK2 (ENSSVLG00005026018) #27 GIMD1 (ENSSVLG00005004555) #28 AIMP1 (ENSSVLG00005004580) #29 TBCK (ENSSVLG00005004638) NPNT (ENSSVLG00005004815) #31 GSTCD (ENSSVLG00005005238) #32 ENSSVLG00005005324 #33 ENSSVLG00005005384 #35 ENSSVLG00005005442 #35 ENSSVLG00005005487 PPA2 (ENSSVLG00005005595) Eurasian red squirrel MODERN SPECIES 7 OXSR1 (ENSSVLG00005024902) MYD88 (ENSSVLG00005024794) ENSSVLG00005024767 XYLB (ENSSVLG00005024748) ACVR2B (ENSSVLG00005024714) EXOG (ENSSVLG00005024674) ENSSVLG00005024654 SCN5A (ENSSVLG00005023875) SCN10A (ENSSVLG00005023368) SCN11A (ENSSVLG00005022915) WDR48 (ENSSVLG00005022801) GORASP1 (ENSSVLG00005022690) TTC21A (ENSSVLG00005022643) CSRNP1 (ENSSVLG00005022609) XIRP1 (ENSSVLG00005022577) ENSSVLG00005022561 #22 CX3CR1 (ENSSVLG00005022515) ENSSVLG00005022488 ENSSVLG00005022470 SLC25A38 (ENSSVLG00005022356) ENSSVLG00005022288 ENSSVLG00005022262 ENSSVLG00005022240 MYRIP (ENSSVLG00005021784) EIF1B (ENSSVLG00005021694) ENTPD3 (ENSSVLG00005021557) RPL14 (ENSSVLG00005021436) ZNF619 (ENSSVLG00005021377) ZNF621 (ENSSVLG00005021120) ENSSVLG00005021100 CTNNB1 (ENSSVLG00005020963)