Rodentia_A	ANCESTRAL SPECIES	24	ENSGT01050000244965.b #7	ENSGT00940000158366 #8	ENSGT00940000156627 #9	ENSGT01100000263524.I #10	ENSGT00730000111223 #11	ENSGT00930000151042 #12	ENSGT00390000008798.c #13	ENSGT00940000155140 #14	ENSGT00940000158059 #15	ENSGT00950000182924.B.a.a #16	ENSGT00940000159823 #18	ENSGT00940000157910 #19	ENSGT00390000001376 #20	ENSGT00390000008294.f ##21	ENSGT00390000008294.e.b.a.a #21	ENSGT00940000159660 #22	ENSGT00940000159984 #23	ENSGT00940000157714 #24	ENSGT00940000157370 #25	ENSGT00390000009613.b #26	ENSGT00940000162188 #27	ENSGT00530000069080 #28	ENSGT00940000154950 #29	ENSGT00940000158244 #30	ENSGT00930000150973.B #31	ENSGT00390000004446 #32	ENSGT00390000005218 #33	ENSGT00950000183088.a.b.b #34	ENSGT00390000017004.a.a #35	ENSGT00940000160003 #36	ENSGT00940000154108.b.a.a #37
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT01050000244965.b #7	ENSGT00940000158366 #8	ENSGT00940000156627 #9	ENSGT01100000263524.I #10	ENSGT00730000111223 #11	ENSGT00930000151042 #12	ENSGT00390000008798.c #13	ENSGT00940000155140 #14	ENSGT00940000158059 #15	ENSGT00950000182924.B.a.a #16	ENSGT00940000159823 #18	ENSGT00940000157910 #19	ENSGT00390000001376 #20	ENSGT00390000008294.f ##21	ENSGT00390000008294.e.b.a.a #21	ENSGT00940000159660 #22	ENSGT00940000159984 #23	ENSGT00940000157714 #24	ENSGT00940000157370 #25	ENSGT00390000009613.b #26	ENSGT00940000162188 #27	ENSGT00530000069080 #28	ENSGT00940000154950 #29	ENSGT00940000158244 #30	ENSGT00930000150973.B #31	ENSGT00390000004446 #32	ENSGT00390000005218 #33	ENSGT00950000183088.a.b.b #34	ENSGT00390000017004.a.a #35	ENSGT00940000160003 #36	ENSGT00940000154108.b.a.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00940000156946	ENSGT01050000244965.b #7	ENSGT00940000158366 #8	ENSGT00940000156627 #9	ENSGT01100000263524.I #10	ENSGT00730000111223 #11	ENSGT00930000151042 #12	ENSGT00390000008798.c #13	ENSGT00940000155140 #14	ENSGT00940000158059 #15	ENSGT00950000182924.B.a.a #16	ENSGT00940000159823 #18	ENSGT00940000157910 #19	ENSGT00390000001376 #20	ENSGT00390000008294.e.b.a.a #21	ENSGT00940000159660 #22	ENSGT00940000159984 #23	ENSGT00940000157714 #24	ENSGT00940000157370 #25	ENSGT00390000009613.b #26	ENSGT00940000162188 #27	ENSGT00530000069080 #28	ENSGT00940000154950 #29	ENSGT00940000158244 #30	ENSGT00930000150973.B #31	ENSGT00390000004446 #32	ENSGT00390000005218 #33	ENSGT00950000183088.a.b.b #34	ENSGT00390000017004.a.a #35	ENSGT00940000160003 #36	ENSGT00940000154108.b.a.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT01050000244965.b #7	ENSGT00940000158366 #8	ENSGT00940000156627 #9	ENSGT01100000263524.I #10	ENSGT00730000111223 #11	ENSGT00930000151042 #12	ENSGT00390000008798.c #13	ENSGT00940000155140 #14	ENSGT00940000158059 #15	ENSGT00950000182924.B.a.a #16	ENSGT00940000159823 #18	ENSGT00940000157910 #19	ENSGT00390000001376 #20	ENSGT00390000008294.f ##21	ENSGT00390000008294.e.b.a.a #21	ENSGT00940000159660 #22	ENSGT00940000159984 #23	ENSGT00940000157714 #24	ENSGT00940000157370 #25	ENSGT00390000009613.b #26	ENSGT00940000162188 #27	ENSGT00530000069080 #28	ENSGT00940000154950 #29	ENSGT00940000158244 #30	ENSGT00930000150973.B #31	ENSGT00390000004446 #32	ENSGT00390000005218 #33	ENSGT00950000183088.a.b.b #34	ENSGT00390000017004.a.a #35	ENSGT00940000160003 #36	ENSGT00940000154108.b.a.a #37
Long-tailed chinchilla	MODERN SPECIES	203	ELOVL6 (ENSCLAG00000003163) #7	EGF (ENSCLAG00000003331) #8	LRIT3 (ENSCLAG00000004694) #9	RRH (ENSCLAG00000005130) #10	GAR1 (ENSCLAG00000005335) #11	CFI (ENSCLAG00000006216) #12	PLA2G12A (ENSCLAG00000006595) #13	CASP6 (ENSCLAG00000003293) #14	MCUB (ENSCLAG00000003597) #15	SEC24B (ENSCLAG00000004027) #16	ENSCLAG00000002421 #17	COL25A1 (ENSCLAG00000002719) #18	ETNPPL (ENSCLAG00000002982) #19	OSTC (ENSCLAG00000003790) #20	ENSCLAG00000003911 #21	LEF1 (ENSCLAG00000003044) #22	HADH (ENSCLAG00000003966) #23	CYP2U1 (ENSCLAG00000002674) #24	SGMS2 (ENSCLAG00000002723) #25	PAPSS1 (ENSCLAG00000002840) #26	DKK2 (ENSCLAG00000002881) #27	GIMD1 (ENSCLAG00000003485) #28	AIMP1 (ENSCLAG00000003954) #29	TBCK (ENSCLAG00000004392) #30	NPNT (ENSCLAG00000002301) #31	GSTCD (ENSCLAG00000002751) #32	INTS12 (ENSCLAG00000003066) #33	ARHGEF38 (ENSCLAG00000003103) #34	PPA2 (ENSCLAG00000004964) #35	TET2 (ENSCLAG00000005412) #36	ENSCLAG00000005638 #37
Degu	MODERN SPECIES	57	LRIT3 (ENSODEG00000014302) #9	RRH (ENSODEG00000010773) #10	GAR1 (ENSODEG00000011083) #11	CFI (ENSODEG00000010069) #12	ENSODEG00000011603 #13	CASP6 (ENSODEG00000010252) #14	MCUB (ENSODEG00000010641) #15	SEC24B (ENSODEG00000011940) #16	ENSODEG00000019962	ENSODEG00000011204	COL25A1 (ENSODEG00000011565) #18	ETNPPL (ENSODEG00000011007) #19	OSTC (ENSODEG00000011874) #20	ENSODEG00000012716 ##21	ENSODEG00000019987	LEF1 (ENSODEG00000010436) #22	HADH (ENSODEG00000011168) #23	CYP2U1 (ENSODEG00000010344) #24	SGMS2 (ENSODEG00000010387) #25	PAPSS1 (ENSODEG00000012464) #26	DKK2 (ENSODEG00000013005) #27	GIMD1 (ENSODEG00000011081) #28	ENSODEG00000010617 #29	ENSODEG00000011791	NPNT (ENSODEG00000012616) #31	GSTCD (ENSODEG00000011298) #32	INTS12 (ENSODEG00000010716) #33	ENSODEG00000011418 #34	ENSODEG00000010989 #34	ENSODEG00000011526	ENSODEG00000012068
Guinea pig	MODERN SPECIES	43	ELOVL6 (ENSCPOG00000038802) #7	EGF (ENSCPOG00000000779) #8	LRIT3 (ENSCPOG00000000776) #9	RRH (ENSCPOG00000004217) #10	GAR1 (ENSCPOG00000004216) #11	CFI (ENSCPOG00000004214) #12	PLA2G12A (ENSCPOG00000004212) #13	CASP6 (ENSCPOG00000031434) #14	ENSCPOG00000002110 #15	ENSCPOG00000022594	SEC24B (ENSCPOG00000009212) #16	COL25A1 (ENSCPOG00000012595) #18	ETNPPL (ENSCPOG00000015368) #19	OSTC (ENSCPOG00000039456) #20	ENSCPOG00000037181 #21	LEF1 (ENSCPOG00000013758) #22	HADH (ENSCPOG00000024229) #23	CYP2U1 (ENSCPOG00000011750) #24	SGMS2 (ENSCPOG00000032233) #25	PAPSS1 (ENSCPOG00000011505) #26	DKK2 (ENSCPOG00000030616) #27	AIMP1 (ENSCPOG00000006734) #29	TBCK (ENSCPOG00000006708) #30	NPNT (ENSCPOG00000006697) #31	GSTCD (ENSCPOG00000008688) #32	INTS12 (ENSCPOG00000009129) #33	ENSCPOG00000039865 #34	ENSCPOG00000024558 #34	ENSCPOG00000023083	PPA2 (ENSCPOG00000012683) #35	TET2 (ENSCPOG00000005784) #36
Naked mole-rat female	MODERN SPECIES	19	ENSHGLG00000003109	ENSHGLG00000001432 #16	ENSHGLG00000000975 #15	CASP6 (ENSHGLG00000000729) #14	PLA2G12A (ENSHGLG00000000692) #13	GAR1 (ENSHGLG00000000493) #11	RRH (ENSHGLG00000004643) #10	ENSHGLG00000002404 #8	ENSHGLG00000034086	ELOVL6 (ENSHGLG00000037368) #7	ENPEP (ENSHGLG00000002965)	ENSHGLG00000047113	ENSHGLG00000004469 #19	ENSHGLG00000001959 #20	RPL34 (ENSHGLG00000050296) ##21	LEF1 (ENSHGLG00000046551) #22	HADH (ENSHGLG00000032988) #23	ENSHGLG00000038714 #24	PAPSS1 (ENSHGLG00000001783) #26	ENSHGLG00000044153	DKK2 (ENSHGLG00000032510) #27	GIMD1 (ENSHGLG00000003404) #28	AIMP1 (ENSHGLG00000003860) #29	TBCK (ENSHGLG00000008209) #30	ENSHGLG00000034242	NPNT (ENSHGLG00000001987) #31	GSTCD (ENSHGLG00000001718) #32	ENSHGLG00000050195	INTS12 (ENSHGLG00000002096) #33	ARHGEF38 (ENSHGLG00000034470) #34	ENSHGLG00000001427 #34
Sciuridae	ANCESTRAL SPECIES	43	ENSGT00940000156946	ENSGT01050000244965.b #7	ENSGT00940000158366 #8	ENSGT00940000156627 #9	ENSGT01100000263524.I #10	ENSGT00730000111223 #11	ENSGT00930000151042 #12	ENSGT00390000008798.c #13	ENSGT00940000155140 #14	ENSGT00940000158059 #15	ENSGT00950000182924.B.a.a #16	ENSGT00940000159823 #18	ENSGT00940000157910 #19	ENSGT00390000001376 #20	ENSGT00390000008294.e.b.a.b ##21	ENSGT00940000159660 #22	ENSGT00940000159984 #23	ENSGT00940000157714 #24	ENSGT00940000157370 #25	ENSGT00390000009613.b #26	ENSGT00940000162188 #27	ENSGT00530000069080 #28	ENSGT00940000154950 #29	ENSGT00940000158244 #30	ENSGT00930000150973.B #31	ENSGT00390000004446 #32	ENSGT00390000005218 #33	ENSGT00950000183088.a.b.b #34	ENSGT00390000017004.a.a #35	ENSGT00940000160003 #36	ENSGT00940000154108.b.a.a #37
Marmotini	ANCESTRAL SPECIES	51	ENSGT00940000156946	ENSGT01050000244965.b #7	ENSGT00940000158366 #8	ENSGT00940000156627 #9	ENSGT01100000263524.I #10	ENSGT00730000111223 #11	ENSGT00930000151042 #12	ENSGT00390000008798.c #13	ENSGT00940000155140 #14	ENSGT00940000158059 #15	ENSGT00950000182924.B.a.a #16	ENSGT00940000159823 #18	ENSGT00940000157910 #19	ENSGT00390000001376 #20	ENSGT00390000008294.f ##21	ENSGT00940000159660 #22	ENSGT00940000159984.e #23	ENSGT00940000157714.g #24	ENSGT00940000157714.h #24	ENSGT00940000157370 #25	ENSGT00390000009613.b #26	ENSGT00940000162188 #27	ENSGT00530000069080 #28	ENSGT00940000154950 #29	ENSGT00940000158244 #30	ENSGT00930000150973.B #31	ENSGT00390000004446 #32	ENSGT00390000005218 #33	ENSGT00950000183088.a.b.b #34	ENSGT00390000017004.a.a #35	ENSGT00940000160003 #36
Alpin marmot	MODERN SPECIES	14	ENSMMMG00000011001	ELOVL6 (ENSMMMG00000010968) #7	EGF (ENSMMMG00000010685) #8	ENSMMMG00000010673	LRIT3 (ENSMMMG00000010663) #9	RRH (ENSMMMG00000010634) #10	GAR1 (ENSMMMG00000010623) #11	CFI (ENSMMMG00000010613) #12	PLA2G12A (ENSMMMG00000010605) #13	CASP6 (ENSMMMG00000010597) #14	SEC24B (ENSMMMG00000010546) #16	COL25A1 (ENSMMMG00000010402) #18	ETNPPL (ENSMMMG00000010343) #19	OSTC (ENSMMMG00000010326) #20	RPL34 (ENSMMMG00000010314) ##21	LEF1 (ENSMMMG00000010193) #22	ENSMMMG00000010164 #23	ENSMMMG00000010161 #24	ENSMMMG00000010155 #24	SGMS2 (ENSMMMG00000010143) #25	PAPSS1 (ENSMMMG00000010079) #26	DKK2 (ENSMMMG00000010025) #27	ENSMMMG00000009991	GIMD1 (ENSMMMG00000009944) #28	AIMP1 (ENSMMMG00000009938) #29	TBCK (ENSMMMG00000009872) #30	NPNT (ENSMMMG00000009207) #31	GSTCD (ENSMMMG00000009168) #32	ENSMMMG00000009146 #33	ARHGEF38 (ENSMMMG00000009110) #34	PPA2 (ENSMMMG00000009033) #35
Marmotini_b	ANCESTRAL SPECIES	199															ENSGT00390000008294.e.b.a.a #21	ENSGT00940000159660 #22	ENSGT00940000159984.e #23	ENSGT00940000157714.g #24	ENSGT00940000157714.h #24	ENSGT00940000157370 #25	ENSGT00390000009613.b #26	ENSGT00940000162188 #27	ENSGT00530000069080 #28	ENSGT00940000154950 #29	ENSGT00940000158244 #30	ENSGT00930000150973.B #31	ENSGT00390000004446 #32	ENSGT00390000005218 #33	ENSGT00950000183088.a.b.b #34	ENSGT00390000017004.a.a #35	ENSGT00940000160003 #36
Arctic ground squirrel	MODERN SPECIES	286															ENSUPAG00010008601 #21	LEF1 (ENSUPAG00010008645) #22	ENSUPAG00010008957 #23	CYP2U1 (ENSUPAG00010008973) #24	SGMS2 (ENSUPAG00010008979) #25	PAPSS1 (ENSUPAG00010008992) #26	DKK2 (ENSUPAG00010009013) #27	GIMD1 (ENSUPAG00010009027) #28	AIMP1 (ENSUPAG00010009041) #29	TBCK (ENSUPAG00010009048) #30	NPNT (ENSUPAG00010009088) #31	ENSUPAG00010009407 #32
Squirrel	MODERN SPECIES	418														ENSSTOG00000021644 #20	RPL34 (ENSSTOG00000025964) ##21	LEF1 (ENSSTOG00000001371) #22	HADH (ENSSTOG00000001362) #23	CYP2U1 (ENSSTOG00000001353) #24	SGMS2 (ENSSTOG00000001349) #25	PAPSS1 (ENSSTOG00000009455) #26
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	18	LRIT3 (ENSSVLG00005025995) #9	RRH (ENSSVLG00005025996) #10	GAR1 (ENSSVLG00005025997) #11	CFI (ENSSVLG00005025998) #12	PLA2G12A (ENSSVLG00005025999) #13	ENSSVLG00005026000 #14	MCUB (ENSSVLG00005026001) #15	SEC24B (ENSSVLG00005026003) #16	ENSSVLG00005026004	COL25A1 (ENSSVLG00005026005) #18	ENSSVLG00005026006	ETNPPL (ENSSVLG00005026007) #19	OSTC (ENSSVLG00005026008) #20	RPL34 (ENSSVLG00005026009) ##21	ENSSVLG00005026011	ENSSVLG00005026012 #22	HADH (ENSSVLG00005026013) #23	CYP2U1 (ENSSVLG00005026014) #24	SGMS2 (ENSSVLG00005026015) #25	PAPSS1 (ENSSVLG00005026017) #26	DKK2 (ENSSVLG00005026018) #27	GIMD1 (ENSSVLG00005004555) #28	AIMP1 (ENSSVLG00005004580) #29	TBCK (ENSSVLG00005004638) #30	NPNT (ENSSVLG00005004815) #31	GSTCD (ENSSVLG00005005238) #32	ENSSVLG00005005324 #33	ENSSVLG00005005384 #34	ENSSVLG00005005442 #34	ENSSVLG00005005487	PPA2 (ENSSVLG00005005595) #35
Eurasian red squirrel	MODERN SPECIES	7	OXSR1 (ENSSVLG00005024902)	MYD88 (ENSSVLG00005024794)	ENSSVLG00005024767	XYLB (ENSSVLG00005024748)	ACVR2B (ENSSVLG00005024714)	EXOG (ENSSVLG00005024674)	ENSSVLG00005024654	SCN5A (ENSSVLG00005023875)	SCN10A (ENSSVLG00005023368)	SCN11A (ENSSVLG00005022915)	WDR48 (ENSSVLG00005022801)	GORASP1 (ENSSVLG00005022690)	TTC21A (ENSSVLG00005022643)	CSRNP1 (ENSSVLG00005022609)	XIRP1 (ENSSVLG00005022577)	ENSSVLG00005022561 #22	CX3CR1 (ENSSVLG00005022515)	ENSSVLG00005022488	ENSSVLG00005022470	SLC25A38 (ENSSVLG00005022356)	ENSSVLG00005022288	ENSSVLG00005022262	ENSSVLG00005022240	MYRIP (ENSSVLG00005021784)	EIF1B (ENSSVLG00005021694)	ENTPD3 (ENSSVLG00005021557)	RPL14 (ENSSVLG00005021436)	ZNF619 (ENSSVLG00005021377)	ZNF621 (ENSSVLG00005021120)	ENSSVLG00005021100	CTNNB1 (ENSSVLG00005020963)