Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000160835	ENSGT00940000163868 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00840000131243	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619.l	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a	ENSGT00940000155529.C
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00940000154268.f #7	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000160835	ENSGT00940000163868 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30
Long-tailed chinchilla	MODERN SPECIES	139	NDUFA4 (ENSCLAG00000004050) #7	PHF14 (ENSCLAG00000004153) #8	THSD7A (ENSCLAG00000003554) #9	TMEM106B (ENSCLAG00000003761) #10	ENSCLAG00000003804 #11	ENSCLAG00000003855 #12	BMT2 (ENSCLAG00000003902) #13	ENSCLAG00000003944 #14	GPR85 (ENSCLAG00000004007) #15	SMIM30 (ENSCLAG00000004060) #16	PPP1R3A (ENSCLAG00000004128) #17	FOXP2 (ENSCLAG00000004387) #18	MDFIC (ENSCLAG00000005069) #19	TFEC (ENSCLAG00000005114) #20	TES (ENSCLAG00000005324) #21	CAV1 (ENSCLAG00000005371) #22	MET (ENSCLAG00000005456) #23	CAPZA2 (ENSCLAG00000005899) #24	ST7 (ENSCLAG00000006207) #25	WNT2 (ENSCLAG00000003334) #26	ASZ1 (ENSCLAG00000003377) #27	CFTR (ENSCLAG00000003484) #28	CTTNBP2 (ENSCLAG00000003619) #29	LSM8 (ENSCLAG00000003726) #30
Degu	MODERN SPECIES	254											FOXP2 (ENSODEG00000002893) #18	MDFIC (ENSODEG00000001945) #19	TFEC (ENSODEG00000001900) #20	TES (ENSODEG00000001840) #21	ENSODEG00000001807	CAV1 (ENSODEG00000001377) #22	MET (ENSODEG00000001007) #23	ENSODEG00000001510 #24	ST7 (ENSODEG00000001361) #25	WNT2 (ENSODEG00000001299) #26	ASZ1 (ENSODEG00000001288) #27	CFTR (ENSODEG00000001056) #28	CTTNBP2 (ENSODEG00000000966) #29
Guinea pig	MODERN SPECIES	11	PHF14 (ENSCPOG00000002218) #8	ENSCPOG00000040423	THSD7A (ENSCPOG00000000279) #9	TMEM106B (ENSCPOG00000038943) #10	VWDE (ENSCPOG00000005082)	TMEM168 (ENSCPOG00000011647) #12	BMT2 (ENSCPOG00000014132) #13	GPR85 (ENSCPOG00000031444) #15	SMIM30 (ENSCPOG00000033718) #16	PPP1R3A (ENSCPOG00000012124) #17	FOXP2 (ENSCPOG00000000938) #18	MDFIC (ENSCPOG00000034814) #19	TFEC (ENSCPOG00000012369) #20	TES (ENSCPOG00000008823) #21	ENSCPOG00000031628	CAV1 (ENSCPOG00000002524) #22	MET (ENSCPOG00000013525) #23	CAPZA2 (ENSCPOG00000007677) #24	ST7 (ENSCPOG00000015621) #25	WNT2 (ENSCPOG00000033615) #26	ASZ1 (ENSCPOG00000009750) #27	CFTR (ENSCPOG00000012767) #28	CTTNBP2 (ENSCPOG00000004194) #29	LSM8 (ENSCPOG00000035673) #30	KCND2 (ENSCPOG00000011847)	TSPAN12 (ENSCPOG00000011851)	ING3 (ENSCPOG00000023225)	CPED1 (ENSCPOG00000007693)	WNT16 (ENSCPOG00000005635)	FAM3C (ENSCPOG00000005639)	PTPRZ1 (ENSCPOG00000039416)