Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000160835	ENSGT01100000263477.F	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b ##22	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000160835	ENSGT00940000163868 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00840000131243	ENSGT00950000183006.A.b ##22	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619.l	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a	ENSGT00940000155529.C
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000160835	ENSGT00940000163868 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00840000131243	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619.l	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a	ENSGT00940000155529.C
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00940000154268.f #7	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000160835	ENSGT00940000163868 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30
Long-tailed chinchilla	MODERN SPECIES	139	NDUFA4 (ENSCLAG00000004050) #7	PHF14 (ENSCLAG00000004153) #8	THSD7A (ENSCLAG00000003554) #9	TMEM106B (ENSCLAG00000003761) #10	ENSCLAG00000003804 #11	ENSCLAG00000003855 #12	BMT2 (ENSCLAG00000003902) #13	ENSCLAG00000003944 #14	GPR85 (ENSCLAG00000004007) #15	SMIM30 (ENSCLAG00000004060) #16	PPP1R3A (ENSCLAG00000004128) #17	FOXP2 (ENSCLAG00000004387) #18	MDFIC (ENSCLAG00000005069) #19	TFEC (ENSCLAG00000005114) #20	TES (ENSCLAG00000005324) #21	CAV1 (ENSCLAG00000005371) #22	MET (ENSCLAG00000005456) #23	CAPZA2 (ENSCLAG00000005899) #24	ST7 (ENSCLAG00000006207) #25	WNT2 (ENSCLAG00000003334) #26	ASZ1 (ENSCLAG00000003377) #27	CFTR (ENSCLAG00000003484) #28	CTTNBP2 (ENSCLAG00000003619) #29	LSM8 (ENSCLAG00000003726) #30
Degu	MODERN SPECIES	254											FOXP2 (ENSODEG00000002893) #18	MDFIC (ENSODEG00000001945) #19	TFEC (ENSODEG00000001900) #20	TES (ENSODEG00000001840) #21	ENSODEG00000001807	CAV1 (ENSODEG00000001377) #22	MET (ENSODEG00000001007) #23	ENSODEG00000001510 #24	ST7 (ENSODEG00000001361) #25	WNT2 (ENSODEG00000001299) #26	ASZ1 (ENSODEG00000001288) #27	CFTR (ENSODEG00000001056) #28	CTTNBP2 (ENSODEG00000000966) #29
Guinea pig	MODERN SPECIES	11	PHF14 (ENSCPOG00000002218) #8	ENSCPOG00000040423	THSD7A (ENSCPOG00000000279) #9	TMEM106B (ENSCPOG00000038943) #10	VWDE (ENSCPOG00000005082)	TMEM168 (ENSCPOG00000011647) #12	BMT2 (ENSCPOG00000014132) #13	GPR85 (ENSCPOG00000031444) #15	SMIM30 (ENSCPOG00000033718) #16	PPP1R3A (ENSCPOG00000012124) #17	FOXP2 (ENSCPOG00000000938) #18	MDFIC (ENSCPOG00000034814) #19	TFEC (ENSCPOG00000012369) #20	TES (ENSCPOG00000008823) #21	ENSCPOG00000031628	CAV1 (ENSCPOG00000002524) #22	MET (ENSCPOG00000013525) #23	CAPZA2 (ENSCPOG00000007677) #24	ST7 (ENSCPOG00000015621) #25	WNT2 (ENSCPOG00000033615) #26	ASZ1 (ENSCPOG00000009750) #27	CFTR (ENSCPOG00000012767) #28	CTTNBP2 (ENSCPOG00000004194) #29	LSM8 (ENSCPOG00000035673) #30	KCND2 (ENSCPOG00000011847)	TSPAN12 (ENSCPOG00000011851)	ING3 (ENSCPOG00000023225)	CPED1 (ENSCPOG00000007693)	WNT16 (ENSCPOG00000005635)	FAM3C (ENSCPOG00000005639)	PTPRZ1 (ENSCPOG00000039416)
Naked mole-rat female	MODERN SPECIES	5	BMT2 (ENSHGLG00000019466) #13	ENSHGLG00000048859	GPR85 (ENSHGLG00000033932) #15	SMIM30 (ENSHGLG00000021399) #16	PPP1R3A (ENSHGLG00000043566) #17	ENSHGLG00000046698	ENSHGLG00000047898 #18	FOXP2 (ENSHGLG00000019590) #18	MDFIC (ENSHGLG00000040491) #19	ENSHGLG00000036175	TFEC (ENSHGLG00000013967) #20	ENSHGLG00000013746 #21	ENSHGLG00000042544	ENSHGLG00000035433	CAV2 (ENSHGLG00000050485) ##22	ENSHGLG00000042630 #22	MET (ENSHGLG00000002836) #23	ENSHGLG00000031932	ENSHGLG00000042742 #24	ENSHGLG00000002784 #24	ST7 (ENSHGLG00000002466) #25	ENSHGLG00000003310	WNT2 (ENSHGLG00000036817) #26	ASZ1 (ENSHGLG00000002226) #27	ENSHGLG00000041588	ENSHGLG00000002151 #28	ENSHGLG00000037153	NAA38 (ENSHGLG00000043821) #30	ENSHGLG00000038825	ENSHGLG00000006757	ENSHGLG00000010919
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000160835	ENSGT01100000263477.F	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b ##22	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00940000182222	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216
Marmotini	ANCESTRAL SPECIES	35	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000163868 #11	ENSGT01100000263477.F	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b ##22	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212.y #30	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480
Alpin marmot	MODERN SPECIES	22	THSD7A (ENSMMMG00000013947) #9	TMEM106B (ENSMMMG00000014045) #10	ENSMMMG00000014055 #11	ENSMMMG00000014069	TMEM168 (ENSMMMG00000014072) #12	BMT2 (ENSMMMG00000014094) #13	GPR85 (ENSMMMG00000014112) #15	SMIM30 (ENSMMMG00000014120) #16	PPP1R3A (ENSMMMG00000014132) #17	FOXP2 (ENSMMMG00000014150) #18	MDFIC (ENSMMMG00000014295) #19	ENSMMMG00000014306	TFEC (ENSMMMG00000014310) #20	TES (ENSMMMG00000014318) #21	ENSMMMG00000014340	CAV1 (ENSMMMG00000014351) #22	MET (ENSMMMG00000014368) #23	CAPZA2 (ENSMMMG00000014429) #24	ST7 (ENSMMMG00000014467) #25	WNT2 (ENSMMMG00000014617) #26	ASZ1 (ENSMMMG00000014625) #27	ENSMMMG00000014643 #28	CTTNBP2 (ENSMMMG00000014680) #29	ENSMMMG00000014734	ENSMMMG00000014735	ENSMMMG00000014759	KCND2 (ENSMMMG00000014763)	TSPAN12 (ENSMMMG00000014770)	ING3 (ENSMMMG00000014787)	CPED1 (ENSMMMG00000014806)	WNT16 (ENSMMMG00000014850)
Marmotini_b	ANCESTRAL SPECIES	193						ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b ##22	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212.y #30	ENSGT00940000161777.b
Squirrel	MODERN SPECIES	189						ENSSTOG00000020797 #12	BMT2 (ENSSTOG00000021009) #13	GPR85 (ENSSTOG00000019520) #15	SMIM30 (ENSSTOG00000028596) #16	PPP1R3A (ENSSTOG00000026781) #17	FOXP2 (ENSSTOG00000008964) #18	MDFIC (ENSSTOG00000014533) #19	TFEC (ENSSTOG00000001224) #20	TES (ENSSTOG00000025936) #21	CAV2 (ENSSTOG00000021668) ##22	CAV1 (ENSSTOG00000029133) #22	MET (ENSSTOG00000029241) #23	CAPZA2 (ENSSTOG00000024828) #24	ST7 (ENSSTOG00000005659) #25	WNT2 (ENSSTOG00000005674) #26	ASZ1 (ENSSTOG00000005688) #27	ENSSTOG00000005707 #28	CTTNBP2 (ENSSTOG00000023371) #29	ENSSTOG00000009039 #30
Arctic ground squirrel	MODERN SPECIES	450													TFEC (ENSUPAG00010007755) #20	TES (ENSUPAG00010007745) #21	CAV2 (ENSUPAG00010007734) ##22	CAV1 (ENSUPAG00010007722) #22	MET (ENSUPAG00010007695) #23	CAPZA2 (ENSUPAG00010007688) #24
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005004482	TMEM168 (ENSSVLG00005004449) #12	ENSSVLG00005004429	BMT2 (ENSSVLG00005004404) #13	GPR85 (ENSSVLG00005004361) #15	SMIM30 (ENSSVLG00005004347) #16	PPP1R3A (ENSSVLG00005004322) #17	ENSSVLG00005019641 #18	ENSSVLG00005018881 #18	MDFIC (ENSSVLG00005018724) #19	TFEC (ENSSVLG00005018526) #20	ENSSVLG00005018477	TES (ENSSVLG00005018372) #21	ENSSVLG00005018352	CAV2 (ENSSVLG00005018312) ##22	CAV1 (ENSSVLG00005018241) #22	ENSSVLG00005018138	ENSSVLG00005018122	CAPZA2 (ENSSVLG00005017995) #24	ST7 (ENSSVLG00005015943) #25	WNT2 (ENSSVLG00005015494) #26	ENSSVLG00005015363 #27	CFTR (ENSSVLG00005014470) #28	CTTNBP2 (ENSSVLG00005014155) #29	LSM8 (ENSSVLG00005014022) #30	ENSSVLG00005013879	ENSSVLG00005013739	KCND2 (ENSSVLG00005013713)	TSPAN12 (ENSSVLG00005013639)	ING3 (ENSSVLG00005013543)	CPED1 (ENSSVLG00005013406)