Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT01100000263477.F	ENSGT00940000163868	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT01100000263477.F	ENSGT00940000163868	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Cricetinae	ANCESTRAL SPECIES	23	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Golden Hamster	MODERN SPECIES	724	ENSMAUG00000020191 #7	Ndufa4 (ENSMAUG00000017004) #8	Phf14 (ENSMAUG00000015385) #9	Thsd7a (ENSMAUG00000015901) #10	Tmem106b (ENSMAUG00000017350) #11	ENSMAUG00000009860 #12	Tmem168 (ENSMAUG00000014941) #13	Bmt2 (ENSMAUG00000019868) #14	Gpr85 (ENSMAUG00000015334) #15	Ppp1r3a (ENSMAUG00000018440) #16	Foxp2 (ENSMAUG00000016128) #17	Mdfic (ENSMAUG00000015022) #18	Tfec (ENSMAUG00000001990) #19	ENSMAUG00000001763 #20	Cav2 (ENSMAUG00000007439) #21	Cav1 (ENSMAUG00000005941) #22	Met (ENSMAUG00000012960) #23	Capza2 (ENSMAUG00000019994) #24	St7 (ENSMAUG00000008642) #25	Wnt2 (ENSMAUG00000012450) #26	ENSMAUG00000011480 #27	Cftr (ENSMAUG00000013946) #28	Cttnbp2 (ENSMAUG00000014490) #29
Chinese hamster chok1gshd	MODERN SPECIES	54	Phf14 (ENSCGRG00001004536) #9	Thsd7a (ENSCGRG00001021435) #10	Tmem106b (ENSCGRG00001001564) #11	ENSCGRG00001008481 #12	ENSCGRG00001002512	Tmem168 (ENSCGRG00001018555) #13	Bmt2 (ENSCGRG00001002593) #14	Gpr85 (ENSCGRG00001001502) #15	Smim30 (ENSCGRG00001006732)	Ppp1r3a (ENSCGRG00001019903) #16	Foxp2 (ENSCGRG00001011096) #17	Mdfic (ENSCGRG00001017688) #18	Tfec (ENSCGRG00001017234) #19	ENSCGRG00001023123 #20	Cav2 (ENSCGRG00001020610) #21	Cav1 (ENSCGRG00001019680) #22	Met (ENSCGRG00001011551) #23	Capza2 (ENSCGRG00001022803) #24	St7 (ENSCGRG00001018752) #25	Wnt2 (ENSCGRG00001005484) #26	Asz1 (ENSCGRG00001020481) #27	Cftr (ENSCGRG00001006106) #28	Cttnbp2 (ENSCGRG00001010648) #29	Lsm8 (ENSCGRG00001000450)	Ankrd7 (ENSCGRG00001022051)	ENSCGRG00001021813	ENSCGRG00001021329	Kcnd2 (ENSCGRG00001013210)	Tspan12 (ENSCGRG00001012145)	Ing3 (ENSCGRG00001012381)	Cped1 (ENSCGRG00001009705)
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Northern American deer mouse	MODERN SPECIES	16	Vwde (ENSPEMG00000021059)	ENSPEMG00000030634	ENSPEMG00000004158	Tmem168 (ENSPEMG00000000238) #13	Bmt2 (ENSPEMG00000021873) #14	ENSPEMG00000024703	Gpr85 (ENSPEMG00000025083) #15	Smim30 (ENSPEMG00000015135)	Ppp1r3a (ENSPEMG00000011327) #16	Foxp2 (ENSPEMG00000017097) #17	Mdfic (ENSPEMG00000000955) #18	Tfec (ENSPEMG00000016053) #19	ENSPEMG00000002837 #20	ENSPEMG00000011977	Cav2 (ENSPEMG00000024329) #21	Cav1 (ENSPEMG00000024904) #22	Met (ENSPEMG00000021204) #23	Capza2 (ENSPEMG00000023836) #24	St7 (ENSPEMG00000006510) #25	Wnt2 (ENSPEMG00000024059) #26	Asz1 (ENSPEMG00000005011) #27	Cftr (ENSPEMG00000008730) #28	Cttnbp2 (ENSPEMG00000006365) #29	Lsm8 (ENSPEMG00000009153)	Ankrd7 (ENSPEMG00000015569)	ENSPEMG00000026145	ENSPEMG00000025502	ENSPEMG00000025522	ENSPEMG00000027299	Kcnd2 (ENSPEMG00000012871)	Tspan12 (ENSPEMG00000016235)
Prairie vole	MODERN SPECIES	350	Tmem106b (ENSMOCG00000019810) #11	ENSMOCG00000008088	ENSMOCG00000010148	ENSMOCG00000014014	Tmem168 (ENSMOCG00000016323) #13	Bmt2 (ENSMOCG00000003495) #14	Gpr85 (ENSMOCG00000007052) #15	Ppp1r3a (ENSMOCG00000007450) #16	Foxp2 (ENSMOCG00000018674) #17	Mdfic (ENSMOCG00000014159) #18	ENSMOCG00000018404	ENSMOCG00000002194	Tfec (ENSMOCG00000021582) #19	ENSMOCG00000011236 #20	Cav2 (ENSMOCG00000015582) #21	Cav1 (ENSMOCG00000019224) #22	Met (ENSMOCG00000006344) #23	Capza2 (ENSMOCG00000017352) #24	St7 (ENSMOCG00000016312) #25	Wnt2 (ENSMOCG00000022808) #26	Asz1 (ENSMOCG00000001767) #27	Cftr (ENSMOCG00000007371) #28	Cttnbp2 (ENSMOCG00000010478) #29	ENSMOCG00000018450	Lsm8 (ENSMOCG00000001688)	Kcnd2 (ENSMOCG00000022409)	Tspan12 (ENSMOCG00000018964)	Ing3 (ENSMOCG00000015011)	Cped1 (ENSMOCG00000013716)	Wnt16 (ENSMOCG00000021643)	Fam3c (ENSMOCG00000005307)
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Mus	ANCESTRAL SPECIES	20	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Mus_B	ANCESTRAL SPECIES	20	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Mouse	MODERN SPECIES	15	Ndufa4 (ENSMUSG00000029632) #8	Phf14 (ENSMUSG00000029629) #9	Thsd7a (ENSMUSG00000032625) #10	Tmem106b (ENSMUSG00000029571) #11	Vwde (ENSMUSG00000079679)	Tmem168 (ENSMUSG00000029569) #13	Bmt2 (ENSMUSG00000042742) #14	Gpr85 (ENSMUSG00000048216) #15	Smim30 (ENSMUSG00000052419)	Ppp1r3a (ENSMUSG00000042717) #16	Foxp2 (ENSMUSG00000029563) #17	Mdfic (ENSMUSG00000041390) #18	Tfec (ENSMUSG00000029553) #19	Tes (ENSMUSG00000029552) #20	Cav2 (ENSMUSG00000000058) #21	Cav1 (ENSMUSG00000007655) #22	Met (ENSMUSG00000009376) #23	Capza2 (ENSMUSG00000015733) #24	St7 (ENSMUSG00000029534) #25	Wnt2 (ENSMUSG00000010797) #26	Asz1 (ENSMUSG00000010796) #27	Cftr (ENSMUSG00000041301) #28	Cttnbp2 (ENSMUSG00000000416) #29	Lsm8 (ENSMUSG00000044155)	Ankrd7 (ENSMUSG00000029517)	Kcnd2 (ENSMUSG00000060882)	Tspan12 (ENSMUSG00000029669)	Ing3 (ENSMUSG00000029670)	Cped1 (ENSMUSG00000062980)	Wnt16 (ENSMUSG00000029671)	Fam3c (ENSMUSG00000029672)
Mus_C	ANCESTRAL SPECIES	19	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a
Steppe mouse	MODERN SPECIES	3058											ENSMSIG00000019921	ENSMSIG00000019922	Tfec (ENSMSIG00000019924) #19	Tes (ENSMSIG00000019933) #20	Cav2 (ENSMSIG00000019974) #21	Cav1 (ENSMSIG00000019988) #22	Met (ENSMSIG00000020011) #23	Capza2 (ENSMSIG00000020054) #24	ENSMSIG00000020093 #25	ENSMSIG00000020188	ENSMSIG00000020205 #26	Cftr (ENSMSIG00000020275) #28
spretus	MODERN SPECIES	15	Ndufa4 (MGP_SPRETEiJ_G0029102) #8	MGP_SPRETEiJ_G0029103 #9	Thsd7a (MGP_SPRETEiJ_G0029104) #10	Tmem106b (MGP_SPRETEiJ_G0029105) #11	Vwde (MGP_SPRETEiJ_G0029106)	Tmem168 (MGP_SPRETEiJ_G0029107) #13	Bmt2 (MGP_SPRETEiJ_G0029108) #14	Gpr85 (MGP_SPRETEiJ_G0029109) #15	Smim30 (MGP_SPRETEiJ_G0029110)	Ppp1r3a (MGP_SPRETEiJ_G0029111) #16	Foxp2 (MGP_SPRETEiJ_G0029112) #17	MGP_SPRETEiJ_G0029113 #18	Tfec (MGP_SPRETEiJ_G0029114) #19	Tes (MGP_SPRETEiJ_G0029115) #20	Cav2 (MGP_SPRETEiJ_G0029116) #21	Cav1 (MGP_SPRETEiJ_G0029117) #22	Met (MGP_SPRETEiJ_G0029118) #23	Capza2 (MGP_SPRETEiJ_G0029119) #24	St7 (MGP_SPRETEiJ_G0029120) #25	Wnt2 (MGP_SPRETEiJ_G0029121) #26	Asz1 (MGP_SPRETEiJ_G0029122) #27	Cftr (MGP_SPRETEiJ_G0029123) #28	Cttnbp2 (MGP_SPRETEiJ_G0029124) #29	Lsm8 (MGP_SPRETEiJ_G0029125)	Ankrd7 (MGP_SPRETEiJ_G0029126)	Kcnd2 (MGP_SPRETEiJ_G0029127)	Tspan12 (MGP_SPRETEiJ_G0029128)	Ing3 (MGP_SPRETEiJ_G0029129)	Cped1 (MGP_SPRETEiJ_G0029130)	Wnt16 (MGP_SPRETEiJ_G0029131)	Fam3c (MGP_SPRETEiJ_G0029132)
Ryukyu mouse	MODERN SPECIES	15	Ndufa4 (MGP_CAROLIEiJ_G0028102) #8	MGP_CAROLIEiJ_G0028103 #9	MGP_CAROLIEiJ_G0028104 #10	Tmem106b (MGP_CAROLIEiJ_G0028105) #11	Vwde (MGP_CAROLIEiJ_G0028106)	MGP_CAROLIEiJ_G0028107 #13	Bmt2 (MGP_CAROLIEiJ_G0028108) #14	Gpr85 (MGP_CAROLIEiJ_G0028109) #15	Smim30 (MGP_CAROLIEiJ_G0028110)	Ppp1r3a (MGP_CAROLIEiJ_G0028111) #16	Foxp2 (MGP_CAROLIEiJ_G0028112) #17	MGP_CAROLIEiJ_G0028113 #18	Tfec (MGP_CAROLIEiJ_G0028114) #19	Tes (MGP_CAROLIEiJ_G0028115) #20	Cav2 (MGP_CAROLIEiJ_G0028116) #21	Cav1 (MGP_CAROLIEiJ_G0028117) #22	Met (MGP_CAROLIEiJ_G0028118) #23	Capza2 (MGP_CAROLIEiJ_G0028119) #24	St7 (MGP_CAROLIEiJ_G0028120) #25	Wnt2 (MGP_CAROLIEiJ_G0028121) #26	Asz1 (MGP_CAROLIEiJ_G0028122) #27	Cftr (MGP_CAROLIEiJ_G0028123) #28	Cttnbp2 (MGP_CAROLIEiJ_G0028124) #29	Lsm8 (MGP_CAROLIEiJ_G0028125)	Ankrd7 (MGP_CAROLIEiJ_G0028126)	Kcnd2 (MGP_CAROLIEiJ_G0028127)	Tspan12 (MGP_CAROLIEiJ_G0028128)	Ing3 (MGP_CAROLIEiJ_G0028129)	Cped1 (MGP_CAROLIEiJ_G0028130)	Wnt16 (MGP_CAROLIEiJ_G0028131)	Fam3c (MGP_CAROLIEiJ_G0028132)
Shrew mouse	MODERN SPECIES	11	Ndufa4 (MGP_PahariEiJ_G0021858) #8	MGP_PahariEiJ_G0021859 #9	Thsd7a (MGP_PahariEiJ_G0021860) #10	Tmem106b (MGP_PahariEiJ_G0021861) #11	Vwde (MGP_PahariEiJ_G0021862)	MGP_PahariEiJ_G0021863 #13	Bmt2 (MGP_PahariEiJ_G0021864) #14	Gpr85 (MGP_PahariEiJ_G0021865) #15	Smim30 (MGP_PahariEiJ_G0021866)	Ppp1r3a (MGP_PahariEiJ_G0021867) #16	Foxp2 (MGP_PahariEiJ_G0021868) #17	MGP_PahariEiJ_G0021869 #18	Tfec (MGP_PahariEiJ_G0021870) #19	Tes (MGP_PahariEiJ_G0021871) #20	Cav2 (MGP_PahariEiJ_G0021872) #21	Cav1 (MGP_PahariEiJ_G0021873) #22	Met (MGP_PahariEiJ_G0021874) #23	Capza2 (MGP_PahariEiJ_G0021875) #24	St7 (MGP_PahariEiJ_G0021876) #25	Wnt2 (MGP_PahariEiJ_G0021877) #26	Asz1 (MGP_PahariEiJ_G0021878) #27	Cftr (MGP_PahariEiJ_G0021879) #28	Cttnbp2 (MGP_PahariEiJ_G0021880) #29	MGP_PahariEiJ_G0021881	Ankrd7 (MGP_PahariEiJ_G0021882)	Kcnd2 (MGP_PahariEiJ_G0021883)	Tspan12 (MGP_PahariEiJ_G0021884)	Ing3 (MGP_PahariEiJ_G0021885)	Cped1 (MGP_PahariEiJ_G0021886)	Wnt16 (MGP_PahariEiJ_G0021887)	Fam3c (MGP_PahariEiJ_G0021888)
Rat	MODERN SPECIES	14	Tas2r7l (ENSRNOG00000024685)	ENSRNOG00000064825	LOC100911252 (ENSRNOG00000062896)	Tmem168 (ENSRNOG00000057290) #13	Bmt2 (ENSRNOG00000007224) #14	ENSRNOG00000031207	Gpr85 (ENSRNOG00000024636) #15	Ppp1r3a (ENSRNOG00000059350) #16	Foxp2 (ENSRNOG00000054508) #17	Rbmxl1b (ENSRNOG00000059347)	Mdfic (ENSRNOG00000053787) #18	RGD1562178 (ENSRNOG00000052702)	Tfec (ENSRNOG00000061595) #19	Tes (ENSRNOG00000051952) #20	Cav2 (ENSRNOG00000057713) #21	Cav1 (ENSRNOG00000056836) #22	Met (ENSRNOG00000052745) #23	Capza2 (ENSRNOG00000056207) #24	ST7 (ENSRNOG00000056243) #25	AC123138.1 (ENSRNOG00000012822)	Wnt2 (ENSRNOG00000051905) #26	Asz1 (ENSRNOG00000060343) #27	ENSRNOG00000067965	Cftr (ENSRNOG00000055103) #28	Cttnbp2 (ENSRNOG00000061845) #29	Lsm8 (ENSRNOG00000070946)	Ankrd7 (ENSRNOG00000055481)	LOC685171 (ENSRNOG00000058543)	Kcnd2 (ENSRNOG00000067416)	Tspan12 (ENSRNOG00000059016)	ENSRNOG00000064820
Upper Galilee mountains blind mole rat	MODERN SPECIES	433												Tfec (ENSNGAG00000014386) #19	ENSNGAG00000019096	ENSNGAG00000016766 #20	Cav2 (ENSNGAG00000015969) #21	Cav1 (ENSNGAG00000019636) #22	Met (ENSNGAG00000014046) #23	Capza2 (ENSNGAG00000001281) #24	St7 (ENSNGAG00000016185) #25	Wnt2 (ENSNGAG00000001319) #26	Asz1 (ENSNGAG00000019679) #27	Cftr (ENSNGAG00000012834) #28	Cttnbp2 (ENSNGAG00000000754) #29	Lsm8 (ENSNGAG00000016554)
Lesser Egyptian jerboa	MODERN SPECIES	67	Qrfprl (ENSJJAG00000017977)	Hpgds (ENSJJAG00000020796)	Smarcad1 (ENSJJAG00000022342)	ENSJJAG00000023468	Atoh1 (ENSJJAG00000001013)	Grid2 (ENSJJAG00000010736)	ENSJJAG00000011795	ENSJJAG00000012600	Ppp1r3a (ENSJJAG00000014929) #16	ENSJJAG00000016852 #17	Mdfic (ENSJJAG00000012683) #18	ENSJJAG00000012867	Tfec (ENSJJAG00000015649) #19	ENSJJAG00000019082 #20	Cav2 (ENSJJAG00000020789) #21	Cav1 (ENSJJAG00000021423) #22	ENSJJAG00000000187	Met (ENSJJAG00000012125) #23	ENSJJAG00000021128 #24	St7 (ENSJJAG00000004440) #25	Wnt2 (ENSJJAG00000017203) #26	Asz1 (ENSJJAG00000022495) #27	ENSJJAG00000022583 #28	Cttnbp2 (ENSJJAG00000013148) #29	ENSJJAG00000003447	Lsm8 (ENSJJAG00000009031)	ENSJJAG00000011628	ENSJJAG00000016745	ENSJJAG00000019540	Kcnd2 (ENSJJAG00000000160)	Tspan12 (ENSJJAG00000006214)
Kangaroo rat	MODERN SPECIES	367	ENSDORG00000023739	Phf14 (ENSDORG00000015520) #9	Thsd7a (ENSDORG00000010842) #10	Tmem106b (ENSDORG00000007476) #11	ENSDORG00000012385	Tmem168 (ENSDORG00000024855) #13	Bmt2 (ENSDORG00000024427) #14	Gpr85 (ENSDORG00000025306) #15	Ppp1r3a (ENSDORG00000023629) #16	Foxp2 (ENSDORG00000007040) #17	Mdfic (ENSDORG00000001488) #18	Tfec (ENSDORG00000004403) #19	ENSDORG00000029823	ENSDORG00000016725 #20	Cav2 (ENSDORG00000023298) #21	Cav1 (ENSDORG00000026258) #22	Met (ENSDORG00000002178) #23	Capza2 (ENSDORG00000016226) #24	St7 (ENSDORG00000016230) #25	Wnt2 (ENSDORG00000016233) #26	Asz1 (ENSDORG00000007590) #27	Cftr (ENSDORG00000005421) #28	ENSDORG00000023544	Cttnbp2 (ENSDORG00000005026) #29	Lsm8 (ENSDORG00000027868)	Ankrd7 (ENSDORG00000002700)	ENSDORG00000028967	Kcnd2 (ENSDORG00000003100)	Tspan12 (ENSDORG00000003102)	Ing3 (ENSDORG00000014497)	Cped1 (ENSDORG00000014498)
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00940000182222	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216
Marmotini	ANCESTRAL SPECIES	35	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212.y	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480
Alpin marmot	MODERN SPECIES	22	THSD7A (ENSMMMG00000013947) #10	TMEM106B (ENSMMMG00000014045) #11	ENSMMMG00000014055	ENSMMMG00000014069	TMEM168 (ENSMMMG00000014072) #13	BMT2 (ENSMMMG00000014094) #14	GPR85 (ENSMMMG00000014112) #15	SMIM30 (ENSMMMG00000014120)	PPP1R3A (ENSMMMG00000014132) #16	FOXP2 (ENSMMMG00000014150) #17	MDFIC (ENSMMMG00000014295) #18	ENSMMMG00000014306	TFEC (ENSMMMG00000014310) #19	TES (ENSMMMG00000014318) #20	ENSMMMG00000014340	CAV1 (ENSMMMG00000014351) #22	MET (ENSMMMG00000014368) #23	CAPZA2 (ENSMMMG00000014429) #24	ST7 (ENSMMMG00000014467) #25	WNT2 (ENSMMMG00000014617) #26	ASZ1 (ENSMMMG00000014625) #27	ENSMMMG00000014643 #28	CTTNBP2 (ENSMMMG00000014680) #29	ENSMMMG00000014734	ENSMMMG00000014735	ENSMMMG00000014759	KCND2 (ENSMMMG00000014763)	TSPAN12 (ENSMMMG00000014770)	ING3 (ENSMMMG00000014787)	CPED1 (ENSMMMG00000014806)	WNT16 (ENSMMMG00000014850)
Marmotini_b	ANCESTRAL SPECIES	193						ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212.y	ENSGT00940000161777.b
Squirrel	MODERN SPECIES	189						ENSSTOG00000020797 #13	BMT2 (ENSSTOG00000021009) #14	GPR85 (ENSSTOG00000019520) #15	SMIM30 (ENSSTOG00000028596)	PPP1R3A (ENSSTOG00000026781) #16	FOXP2 (ENSSTOG00000008964) #17	MDFIC (ENSSTOG00000014533) #18	TFEC (ENSSTOG00000001224) #19	TES (ENSSTOG00000025936) #20	CAV2 (ENSSTOG00000021668) #21	CAV1 (ENSSTOG00000029133) #22	MET (ENSSTOG00000029241) #23	CAPZA2 (ENSSTOG00000024828) #24	ST7 (ENSSTOG00000005659) #25	WNT2 (ENSSTOG00000005674) #26	ASZ1 (ENSSTOG00000005688) #27	ENSSTOG00000005707 #28	CTTNBP2 (ENSSTOG00000023371) #29	ENSSTOG00000009039
Arctic ground squirrel	MODERN SPECIES	450													TFEC (ENSUPAG00010007755) #19	TES (ENSUPAG00010007745) #20	CAV2 (ENSUPAG00010007734) #21	CAV1 (ENSUPAG00010007722) #22	MET (ENSUPAG00010007695) #23	CAPZA2 (ENSUPAG00010007688) #24
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005004482	TMEM168 (ENSSVLG00005004449) #13	ENSSVLG00005004429	BMT2 (ENSSVLG00005004404) #14	GPR85 (ENSSVLG00005004361) #15	SMIM30 (ENSSVLG00005004347)	PPP1R3A (ENSSVLG00005004322) #16	ENSSVLG00005019641 #17	ENSSVLG00005018881 #17	MDFIC (ENSSVLG00005018724) #18	TFEC (ENSSVLG00005018526) #19	ENSSVLG00005018477	TES (ENSSVLG00005018372) #20	ENSSVLG00005018352	CAV2 (ENSSVLG00005018312) #21	CAV1 (ENSSVLG00005018241) #22	ENSSVLG00005018138	ENSSVLG00005018122	CAPZA2 (ENSSVLG00005017995) #24	ST7 (ENSSVLG00005015943) #25	WNT2 (ENSSVLG00005015494) #26	ENSSVLG00005015363 #27	CFTR (ENSSVLG00005014470) #28	CTTNBP2 (ENSSVLG00005014155) #29	LSM8 (ENSSVLG00005014022)	ENSSVLG00005013879	ENSSVLG00005013739	KCND2 (ENSSVLG00005013713)	TSPAN12 (ENSSVLG00005013639)	ING3 (ENSSVLG00005013543)	CPED1 (ENSSVLG00005013406)
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT00940000163868	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00840000131243	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619.l	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a	ENSGT00940000155529.C
Naked mole-rat female	MODERN SPECIES	5	BMT2 (ENSHGLG00000019466) #14	ENSHGLG00000048859	GPR85 (ENSHGLG00000033932) #15	SMIM30 (ENSHGLG00000021399)	PPP1R3A (ENSHGLG00000043566) #16	ENSHGLG00000046698	ENSHGLG00000047898 #17	FOXP2 (ENSHGLG00000019590) #17	MDFIC (ENSHGLG00000040491) #18	ENSHGLG00000036175	TFEC (ENSHGLG00000013967) #19	ENSHGLG00000013746 #20	ENSHGLG00000042544	ENSHGLG00000035433	CAV2 (ENSHGLG00000050485) #21	ENSHGLG00000042630 #22	MET (ENSHGLG00000002836) #23	ENSHGLG00000031932	ENSHGLG00000042742 #24	ENSHGLG00000002784 #24	ST7 (ENSHGLG00000002466) #25	ENSHGLG00000003310	WNT2 (ENSHGLG00000036817) #26	ASZ1 (ENSHGLG00000002226) #27	ENSHGLG00000041588	ENSHGLG00000002151 #28	ENSHGLG00000037153	NAA38 (ENSHGLG00000043821)	ENSHGLG00000038825	ENSHGLG00000006757	ENSHGLG00000010919
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT00940000163868	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00840000131243	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212	ENSGT00940000155472.a.a	ENSGT00510000047764	ENSGT00940000156619.l	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a	ENSGT00940000155529.C
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00940000154268.f #8	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000160835 #12	ENSGT00940000163868	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993 #20	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212
Long-tailed chinchilla	MODERN SPECIES	139	NDUFA4 (ENSCLAG00000004050) #8	PHF14 (ENSCLAG00000004153) #9	THSD7A (ENSCLAG00000003554) #10	TMEM106B (ENSCLAG00000003761) #11	ENSCLAG00000003804	ENSCLAG00000003855 #13	BMT2 (ENSCLAG00000003902) #14	ENSCLAG00000003944	GPR85 (ENSCLAG00000004007) #15	SMIM30 (ENSCLAG00000004060)	PPP1R3A (ENSCLAG00000004128) #16	FOXP2 (ENSCLAG00000004387) #17	MDFIC (ENSCLAG00000005069) #18	TFEC (ENSCLAG00000005114) #19	TES (ENSCLAG00000005324) #20	CAV1 (ENSCLAG00000005371) #22	MET (ENSCLAG00000005456) #23	CAPZA2 (ENSCLAG00000005899) #24	ST7 (ENSCLAG00000006207) #25	WNT2 (ENSCLAG00000003334) #26	ASZ1 (ENSCLAG00000003377) #27	CFTR (ENSCLAG00000003484) #28	CTTNBP2 (ENSCLAG00000003619) #29	LSM8 (ENSCLAG00000003726)
Degu	MODERN SPECIES	254											FOXP2 (ENSODEG00000002893) #17	MDFIC (ENSODEG00000001945) #18	TFEC (ENSODEG00000001900) #19	TES (ENSODEG00000001840) #20	ENSODEG00000001807	CAV1 (ENSODEG00000001377) #22	MET (ENSODEG00000001007) #23	ENSODEG00000001510 #24	ST7 (ENSODEG00000001361) #25	WNT2 (ENSODEG00000001299) #26	ASZ1 (ENSODEG00000001288) #27	CFTR (ENSODEG00000001056) #28	CTTNBP2 (ENSODEG00000000966) #29
Guinea pig	MODERN SPECIES	11	PHF14 (ENSCPOG00000002218) #9	ENSCPOG00000040423	THSD7A (ENSCPOG00000000279) #10	TMEM106B (ENSCPOG00000038943) #11	VWDE (ENSCPOG00000005082) #12	TMEM168 (ENSCPOG00000011647) #13	BMT2 (ENSCPOG00000014132) #14	GPR85 (ENSCPOG00000031444) #15	SMIM30 (ENSCPOG00000033718)	PPP1R3A (ENSCPOG00000012124) #16	FOXP2 (ENSCPOG00000000938) #17	MDFIC (ENSCPOG00000034814) #18	TFEC (ENSCPOG00000012369) #19	TES (ENSCPOG00000008823) #20	ENSCPOG00000031628	CAV1 (ENSCPOG00000002524) #22	MET (ENSCPOG00000013525) #23	CAPZA2 (ENSCPOG00000007677) #24	ST7 (ENSCPOG00000015621) #25	WNT2 (ENSCPOG00000033615) #26	ASZ1 (ENSCPOG00000009750) #27	CFTR (ENSCPOG00000012767) #28	CTTNBP2 (ENSCPOG00000004194) #29	LSM8 (ENSCPOG00000035673)	KCND2 (ENSCPOG00000011847)	TSPAN12 (ENSCPOG00000011851)	ING3 (ENSCPOG00000023225)	CPED1 (ENSCPOG00000007693)	WNT16 (ENSCPOG00000005635)	FAM3C (ENSCPOG00000005639)	PTPRZ1 (ENSCPOG00000039416)