Murinae	ANCESTRAL SPECIES	4	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000163868 #11	ENSGT01100000263477.F	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684 #15	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000161777.b #31	ENSGT00940000155472.a.a #32	ENSGT00510000047764 #33	ENSGT00940000156619 #34	ENSGT00390000015216 #35	ENSGT00940000157480 #36	ENSGT00950000183004.a.b.a.a #37
Mus	ANCESTRAL SPECIES	20	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000163868 #11	ENSGT01100000263477.F	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684 #15	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000161777.b #31	ENSGT00940000155472.a.a #32	ENSGT00510000047764 #33	ENSGT00940000156619 #34	ENSGT00390000015216 #35	ENSGT00940000157480 #36	ENSGT00950000183004.a.b.a.a #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000163868 #11	ENSGT01100000263477.F	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684 #15	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000161777.b #31	ENSGT00940000155472.a.a #32	ENSGT00510000047764 #33	ENSGT00940000156619 #34	ENSGT00390000015216 #35	ENSGT00940000157480 #36	ENSGT00950000183004.a.b.a.a #37
Mus_B	ANCESTRAL SPECIES	20	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000163868 #11	ENSGT01100000263477.F	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684 #15	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000161777.b #31	ENSGT00940000155472.a.a #32	ENSGT00510000047764 #33	ENSGT00940000156619 #34	ENSGT00390000015216 #35	ENSGT00940000157480 #36	ENSGT00950000183004.a.b.a.a #37
Mus_C	ANCESTRAL SPECIES	19	ENSGT00940000156923 #8	ENSGT00940000155427 #9	ENSGT00940000158360 #10	ENSGT00940000163868 #11	ENSGT01100000263477.F	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684 #15	ENSGT00940000157682.B #16	ENSGT00940000155480 #17	ENSGT00940000158685 #18	ENSGT00940000159404 #19	ENSGT00940000155993.c #20	ENSGT00950000183006.A.b #21	ENSGT00950000183006.B.f.b.a #22	ENSGT00940000158022 #23	ENSGT00950000183119.a.e.b #24	ENSGT00390000000873.a.b #25	ENSGT00940000159231 #26	ENSGT00880000138051.a #27	ENSGT00940000158567 #28	ENSGT00940000158293 #29	ENSGT00730000111212 #30	ENSGT00940000161777.b #31	ENSGT00940000155472.a.a #32	ENSGT00510000047764 #33	ENSGT00940000156619 #34	ENSGT00390000015216 #35	ENSGT00940000157480 #36	ENSGT00950000183004.a.b.a.a #37
spretus	MODERN SPECIES	15	Ndufa4 (MGP_SPRETEiJ_G0029102) #7	MGP_SPRETEiJ_G0029103 #8	Thsd7a (MGP_SPRETEiJ_G0029104) #9	Tmem106b (MGP_SPRETEiJ_G0029105) #10	Vwde (MGP_SPRETEiJ_G0029106) #11	Tmem168 (MGP_SPRETEiJ_G0029107) #12	Bmt2 (MGP_SPRETEiJ_G0029108) #13	Gpr85 (MGP_SPRETEiJ_G0029109) #14	Smim30 (MGP_SPRETEiJ_G0029110) #15	Ppp1r3a (MGP_SPRETEiJ_G0029111) #16	Foxp2 (MGP_SPRETEiJ_G0029112) #17	MGP_SPRETEiJ_G0029113 #18	Tfec (MGP_SPRETEiJ_G0029114) #19	Tes (MGP_SPRETEiJ_G0029115) #20	Cav2 (MGP_SPRETEiJ_G0029116) #21	Cav1 (MGP_SPRETEiJ_G0029117) #22	Met (MGP_SPRETEiJ_G0029118) #23	Capza2 (MGP_SPRETEiJ_G0029119) #24	St7 (MGP_SPRETEiJ_G0029120) #25	Wnt2 (MGP_SPRETEiJ_G0029121) #26	Asz1 (MGP_SPRETEiJ_G0029122) #27	Cftr (MGP_SPRETEiJ_G0029123) #28	Cttnbp2 (MGP_SPRETEiJ_G0029124) #29	Lsm8 (MGP_SPRETEiJ_G0029125) #30	Ankrd7 (MGP_SPRETEiJ_G0029126) #31	Kcnd2 (MGP_SPRETEiJ_G0029127) #32	Tspan12 (MGP_SPRETEiJ_G0029128) #33	Ing3 (MGP_SPRETEiJ_G0029129) #34	Cped1 (MGP_SPRETEiJ_G0029130) #35	Wnt16 (MGP_SPRETEiJ_G0029131) #36	Fam3c (MGP_SPRETEiJ_G0029132) #37
Steppe mouse	MODERN SPECIES	3058											ENSMSIG00000019921	ENSMSIG00000019922	Tfec (ENSMSIG00000019924) #19	Tes (ENSMSIG00000019933) #20	Cav2 (ENSMSIG00000019974) #21	Cav1 (ENSMSIG00000019988) #22	Met (ENSMSIG00000020011) #23	Capza2 (ENSMSIG00000020054) #24	ENSMSIG00000020093 #25	ENSMSIG00000020188	ENSMSIG00000020205 #26	Cftr (ENSMSIG00000020275) #28
Mouse	MODERN SPECIES	15	Ndufa4 (ENSMUSG00000029632) #7	Phf14 (ENSMUSG00000029629) #8	Thsd7a (ENSMUSG00000032625) #9	Tmem106b (ENSMUSG00000029571) #10	Vwde (ENSMUSG00000079679) #11	Tmem168 (ENSMUSG00000029569) #12	Bmt2 (ENSMUSG00000042742) #13	Gpr85 (ENSMUSG00000048216) #14	Smim30 (ENSMUSG00000052419) #15	Ppp1r3a (ENSMUSG00000042717) #16	Foxp2 (ENSMUSG00000029563) #17	Mdfic (ENSMUSG00000041390) #18	Tfec (ENSMUSG00000029553) #19	Tes (ENSMUSG00000029552) #20	Cav2 (ENSMUSG00000000058) #21	Cav1 (ENSMUSG00000007655) #22	Met (ENSMUSG00000009376) #23	Capza2 (ENSMUSG00000015733) #24	St7 (ENSMUSG00000029534) #25	Wnt2 (ENSMUSG00000010797) #26	Asz1 (ENSMUSG00000010796) #27	Cftr (ENSMUSG00000041301) #28	Cttnbp2 (ENSMUSG00000000416) #29	Lsm8 (ENSMUSG00000044155) #30	Ankrd7 (ENSMUSG00000029517) #31	Kcnd2 (ENSMUSG00000060882) #32	Tspan12 (ENSMUSG00000029669) #33	Ing3 (ENSMUSG00000029670) #34	Cped1 (ENSMUSG00000062980) #35	Wnt16 (ENSMUSG00000029671) #36	Fam3c (ENSMUSG00000029672) #37
Ryukyu mouse	MODERN SPECIES	15	Ndufa4 (MGP_CAROLIEiJ_G0028102) #7	MGP_CAROLIEiJ_G0028103 #8	MGP_CAROLIEiJ_G0028104 #9	Tmem106b (MGP_CAROLIEiJ_G0028105) #10	Vwde (MGP_CAROLIEiJ_G0028106) #11	MGP_CAROLIEiJ_G0028107 #12	Bmt2 (MGP_CAROLIEiJ_G0028108) #13	Gpr85 (MGP_CAROLIEiJ_G0028109) #14	Smim30 (MGP_CAROLIEiJ_G0028110) #15	Ppp1r3a (MGP_CAROLIEiJ_G0028111) #16	Foxp2 (MGP_CAROLIEiJ_G0028112) #17	MGP_CAROLIEiJ_G0028113 #18	Tfec (MGP_CAROLIEiJ_G0028114) #19	Tes (MGP_CAROLIEiJ_G0028115) #20	Cav2 (MGP_CAROLIEiJ_G0028116) #21	Cav1 (MGP_CAROLIEiJ_G0028117) #22	Met (MGP_CAROLIEiJ_G0028118) #23	Capza2 (MGP_CAROLIEiJ_G0028119) #24	St7 (MGP_CAROLIEiJ_G0028120) #25	Wnt2 (MGP_CAROLIEiJ_G0028121) #26	Asz1 (MGP_CAROLIEiJ_G0028122) #27	Cftr (MGP_CAROLIEiJ_G0028123) #28	Cttnbp2 (MGP_CAROLIEiJ_G0028124) #29	Lsm8 (MGP_CAROLIEiJ_G0028125) #30	Ankrd7 (MGP_CAROLIEiJ_G0028126) #31	Kcnd2 (MGP_CAROLIEiJ_G0028127) #32	Tspan12 (MGP_CAROLIEiJ_G0028128) #33	Ing3 (MGP_CAROLIEiJ_G0028129) #34	Cped1 (MGP_CAROLIEiJ_G0028130) #35	Wnt16 (MGP_CAROLIEiJ_G0028131) #36	Fam3c (MGP_CAROLIEiJ_G0028132) #37
Shrew mouse	MODERN SPECIES	11	Ndufa4 (MGP_PahariEiJ_G0021858) #7	MGP_PahariEiJ_G0021859 #8	Thsd7a (MGP_PahariEiJ_G0021860) #9	Tmem106b (MGP_PahariEiJ_G0021861) #10	Vwde (MGP_PahariEiJ_G0021862) #11	MGP_PahariEiJ_G0021863 #12	Bmt2 (MGP_PahariEiJ_G0021864) #13	Gpr85 (MGP_PahariEiJ_G0021865) #14	Smim30 (MGP_PahariEiJ_G0021866) #15	Ppp1r3a (MGP_PahariEiJ_G0021867) #16	Foxp2 (MGP_PahariEiJ_G0021868) #17	MGP_PahariEiJ_G0021869 #18	Tfec (MGP_PahariEiJ_G0021870) #19	Tes (MGP_PahariEiJ_G0021871) #20	Cav2 (MGP_PahariEiJ_G0021872) #21	Cav1 (MGP_PahariEiJ_G0021873) #22	Met (MGP_PahariEiJ_G0021874) #23	Capza2 (MGP_PahariEiJ_G0021875) #24	St7 (MGP_PahariEiJ_G0021876) #25	Wnt2 (MGP_PahariEiJ_G0021877) #26	Asz1 (MGP_PahariEiJ_G0021878) #27	Cftr (MGP_PahariEiJ_G0021879) #28	Cttnbp2 (MGP_PahariEiJ_G0021880) #29	MGP_PahariEiJ_G0021881 #30	Ankrd7 (MGP_PahariEiJ_G0021882) #31	Kcnd2 (MGP_PahariEiJ_G0021883) #32	Tspan12 (MGP_PahariEiJ_G0021884) #33	Ing3 (MGP_PahariEiJ_G0021885) #34	Cped1 (MGP_PahariEiJ_G0021886) #35	Wnt16 (MGP_PahariEiJ_G0021887) #36	Fam3c (MGP_PahariEiJ_G0021888) #37
Rat	MODERN SPECIES	14	Tas2r7l (ENSRNOG00000024685)	ENSRNOG00000064825	LOC100911252 (ENSRNOG00000062896)	Tmem168 (ENSRNOG00000057290) #12	Bmt2 (ENSRNOG00000007224) #13	ENSRNOG00000031207	Gpr85 (ENSRNOG00000024636) #14	Ppp1r3a (ENSRNOG00000059350) #16	Foxp2 (ENSRNOG00000054508) #17	Rbmxl1b (ENSRNOG00000059347)	Mdfic (ENSRNOG00000053787) #18	RGD1562178 (ENSRNOG00000052702)	Tfec (ENSRNOG00000061595) #19	Tes (ENSRNOG00000051952) #20	Cav2 (ENSRNOG00000057713) #21	Cav1 (ENSRNOG00000056836) #22	Met (ENSRNOG00000052745) #23	Capza2 (ENSRNOG00000056207) #24	ST7 (ENSRNOG00000056243) #25	AC123138.1 (ENSRNOG00000012822)	Wnt2 (ENSRNOG00000051905) #26	Asz1 (ENSRNOG00000060343) #27	ENSRNOG00000067965	Cftr (ENSRNOG00000055103) #28	Cttnbp2 (ENSRNOG00000061845) #29	Lsm8 (ENSRNOG00000070946) #30	Ankrd7 (ENSRNOG00000055481)	LOC685171 (ENSRNOG00000058543)	Kcnd2 (ENSRNOG00000067416) #32	Tspan12 (ENSRNOG00000059016) #33	ENSRNOG00000064820