Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00740000117022	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01100000263482.F ##37	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000157411 #10	ENSGT00740000117022	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000157411 #10	ENSGT00740000117022	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000157411 #10	ENSGT00740000117022	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01100000263482.F ##37	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Felidae	ANCESTRAL SPECIES	8	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479.i #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35
Panthera	ANCESTRAL SPECIES	14	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01060000248892 #14	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01040000242096 #15	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479.i #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01060000248892 #14	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01040000242096 #15	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479.i #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35	ENSGT00390000007247 #36
leopard	MODERN SPECIES	96	ZNF207 (ENSPPRG00000001689) #7	PSMD11 (ENSPPRG00000023389) #8	CDK5R1 (ENSPPRG00000017589) #9	MYO1D (ENSPPRG00000024181) #10	TMEM98 (ENSPPRG00000014217) #11	SPACA3 (ENSPPRG00000013306) #12	ASIC2 (ENSPPRG00000011981) #13	ENSPPRG00000009983 #14	ENSPPRG00000009828 #15	CCL8 (ENSPPRG00000009741) #16	CCL13 (ENSPPRG00000009433) #17	ENSPPRG00000008979 #18	TMEM132E (ENSPPRG00000008656) #19	CCT6B (ENSPPRG00000007926) #20	ZNF830 (ENSPPRG00000017044) #21	LIG3 (ENSPPRG00000005157) #22	RFFL (ENSPPRG00000003045) #23	RAD51D (ENSPPRG00000001417) #24	FNDC8 (ENSPPRG00000000094) #25	NLE1 (ENSPPRG00000022096) #26	UNC45B (ENSPPRG00000014849) #27	SLFN5 (ENSPPRG00000010973) #28	PEX12 (ENSPPRG00000008251) #29	AP2B1 (ENSPPRG00000007979) #30	RASL10B (ENSPPRG00000006126) #31	ENSPPRG00000005858 #32	C17orf50 (ENSPPRG00000005525) #33	MMP28 (ENSPPRG00000004296) #34	TAF15 (ENSPPRG00000003286) #35	HEATR9 (ENSPPRG00000001679) #36	ENSPPRG00000022842 #37
lion	MODERN SPECIES	14	PSMD11 (ENSPLOG00000015536) #8	CDK5R1 (ENSPLOG00000015588) #9	MYO1D (ENSPLOG00000015637) #10	TMEM98 (ENSPLOG00000015789) #11	SPACA3 (ENSPLOG00000015896) #12	ASIC2 (ENSPLOG00000015956) #13	ENSPLOG00000016136	CCL2 (ENSPLOG00000016154) ##37	ENSPLOG00000016184 #15	CCL8 (ENSPLOG00000008313) #16	CCL13 (ENSPLOG00000008357) #17	ENSPLOG00000008391 #18	TMEM132E (ENSPLOG00000008445) #19	CCT6B (ENSPLOG00000008659) #20	ZNF830 (ENSPLOG00000009023) #21	LIG3 (ENSPLOG00000009223) #22	RFFL (ENSPLOG00000009495) #23	RAD51D (ENSPLOG00000009565) #24	FNDC8 (ENSPLOG00000009631) #25	NLE1 (ENSPLOG00000009702) #26	UNC45B (ENSPLOG00000009892) #27	ENSPLOG00000010300	MAP2K3 (ENSPLOG00000010345)	ENSPLOG00000010462	TMEM11 (ENSPLOG00000010503)	DHRS7B (ENSPLOG00000010536)	USP22 (ENSPLOG00000010575)	TNFRSF13B (ENSPLOG00000010669)	ENSPLOG00000010740	PLD6 (ENSPLOG00000010926)	FLCN (ENSPLOG00000010959)
Tiger	MODERN SPECIES	518								ENSPTIG00000019896 #14	ENSPTIG00000019894 #15	CCL8 (ENSPTIG00000019874) #16	CCL13 (ENSPTIG00000019853) #17	ENSPTIG00000019795 #18	TMEM132E (ENSPTIG00000019584) ##19	CCT6B (ENSPTIG00000019230) #20	ZNF830 (ENSPTIG00000009775) #21	LIG3 (ENSPTIG00000019055) #22	RFFL (ENSPTIG00000018905) #23	RAD51D (ENSPTIG00000018745) #24	FNDC8 (ENSPTIG00000018278) #25	NLE1 (ENSPTIG00000018083) #26	UNC45B (ENSPTIG00000017835) #27	SLFN5 (ENSPTIG00000017726) #28	PEX12 (ENSPTIG00000017661) #29	AP2B1 (ENSPTIG00000017111) #30	RASL10B (ENSPTIG00000016870) #31	GAS2L2 (ENSPTIG00000016863)	ENSPTIG00000016834 #32	MMP28 (ENSPTIG00000016715) #34	TAF15 (ENSPTIG00000016445) #35	HEATR9 (ENSPTIG00000016190) #36	ENSPTIG00000015882 #37
Cat	MODERN SPECIES	245	ZNF207 (ENSFCAG00000015387) #7	ENSFCAG00000028860	PSMD11 (ENSFCAG00000002060) #8	CDK5R1 (ENSFCAG00000008545) #9	MYO1D (ENSFCAG00000012420) #10	TMEM98 (ENSFCAG00000000912) #11	SPACA3 (ENSFCAG00000000913) #12	ASIC2 (ENSFCAG00000018329) #13	CCL2 (ENSFCAG00000038488) ##37	CCL7 (ENSFCAG00000045217) ##37	CCL8 (ENSFCAG00000013594) #16	CCL13 (ENSFCAG00000026454) #17	ENSFCAG00000032743 #18	TMEM132E (ENSFCAG00000022991) #19	CCT6B (ENSFCAG00000022789) #20	LIG3 (ENSFCAG00000000249) #22	RFFL (ENSFCAG00000000250) #23	RAD51D (ENSFCAG00000027426) #24	FNDC8 (ENSFCAG00000000252) #25	NLE1 (ENSFCAG00000000253) #26	UNC45B (ENSFCAG00000000254) #27	SLFN5 (ENSFCAG00000000255) #28	PEX12 (ENSFCAG00000010389) #29	AP2B1 (ENSFCAG00000010390) #30	RASL10B (ENSFCAG00000032700) #31	GAS2L2 (ENSFCAG00000033656)	CE1H17orf50 (ENSFCAG00000033141) #33	MMP28 (ENSFCAG00000010393) #34	TAF15 (ENSFCAG00000018167) #35	HEATR9 (ENSFCAG00000002003) #36	CCL5 (ENSFCAG00000001259) #37
Caniformia	ANCESTRAL SPECIES	6	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00740000117022	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01100000263482.F ##37	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Canidae	ANCESTRAL SPECIES	2	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01100000263482.F ##37	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01100000263482.F ##37	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00980000203160	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Dingo	MODERN SPECIES	150	MYO1D (ENSCAFG00020014232) #10	TMEM98 (ENSCAFG00020014224) #11	ENSCAFG00020014220 #12	ASIC2 (ENSCAFG00020014212) #13	ENSCAFG00020014208	ENSCAFG00020014206 ##37	CCL7 (ENSCAFG00020014205) ##37	CCL8 (ENSCAFG00020014202) #16	CCL13 (ENSCAFG00020014200) #17	ENSCAFG00020014197 ##37	TMEM132E (ENSCAFG00020014170) #19	ENSCAFG00020014164	ENSCAFG00020014162	CCT6B (ENSCAFG00020014065) #20	ZNF830 (ENSCAFG00020014057) #21	LIG3 (ENSCAFG00020014031) #22	RFFL (ENSCAFG00020014028) #23	ENSCAFG00020014019 #24	FNDC8 (ENSCAFG00020014010) #25	NLE1 (ENSCAFG00020014001) #26	UNC45B (ENSCAFG00020013977) #27	ENSCAFG00020013972 #28	ENSCAFG00020013969	ENSCAFG00020013962	SLFN14 (ENSCAFG00020013927) ##28	PEX12 (ENSCAFG00020013920) #29	AP2B1 (ENSCAFG00020004407) #30	RASL10B (ENSCAFG00020004082) #31	ENSCAFG00020004079	ENSCAFG00020004077 #32	C17orf50 (ENSCAFG00020004064) #33
Dog	MODERN SPECIES	37	ZNF207 (ENSCAFG00845012267) #7	PSMD11 (ENSCAFG00845012106) #8	CDK5R1 (ENSCAFG00845012076) #9	MYO1D (ENSCAFG00845011784) #10	TMEM98 (ENSCAFG00845011666) #11	SPACA3 (ENSCAFG00845011594) #12	ASIC2 (ENSCAFG00845011475) #13	CCL2 (ENSCAFG00845011375) ##37	CCL8 (ENSCAFG00845011338) #16	CCL1 (ENSCAFG00845011240) #18	CCL13 (ENSCAFG00845011162) #17	TMEM132E (ENSCAFG00845011068) #19	ENSCAFG00845011012	CCT6B (ENSCAFG00845010909) #20	ZNF830 (ENSCAFG00845010855) #21	LIG3 (ENSCAFG00845010737) #22	RFFL (ENSCAFG00845010579) #24	FNDC8 (ENSCAFG00845010495) #25	RFFL (ENSCAFG00845010302) #26	UNC45B (ENSCAFG00845010061) #27	ENSCAFG00845010008 #28	ENSCAFG00845009985	ENSCAFG00845009945	SLFN14 (ENSCAFG00845009886) ##28	ENSCAFG00845009840	PEX12 (ENSCAFG00845009799) #29	AP2B1 (ENSCAFG00845009662) #30	RASL10B (ENSCAFG00845009585) #31	GAS2L2 (ENSCAFG00845009497)	C17orf50 (ENSCAFG00845009445) #33	MMP28 (ENSCAFG00845009411) #34
Red fox	MODERN SPECIES	20	ZNF207 (ENSVVUG00000020618) #7	PSMD11 (ENSVVUG00000020613) #8	CDK5R1 (ENSVVUG00000020611) #9	MYO1D (ENSVVUG00000020589) #10	TMEM98 (ENSVVUG00000020587) #11	SPACA3 (ENSVVUG00000020586) #12	ASIC2 (ENSVVUG00000020562) #13	ENSVVUG00000020545 ##13	CCL2 (ENSVVUG00000020543) ##37	CCL8 (ENSVVUG00000020542) #16	ENSVVUG00000020541 #17	CCL1 (ENSVVUG00000020540) ##37	TMEM132E (ENSVVUG00000020524) #19	CCT6B (ENSVVUG00000020499) #20	ZNF830 (ENSVVUG00000020495) #21	LIG3 (ENSVVUG00000020483) #22	RFFL (ENSVVUG00000020476) #23	RAD51D (ENSVVUG00000020463) #24	FNDC8 (ENSVVUG00000020460) #25	NLE1 (ENSVVUG00000020437) #26	UNC45B (ENSVVUG00000020428) #27	SLFN14 (ENSVVUG00000020422) ##28	PEX12 (ENSVVUG00000020416) #29	AP2B1 (ENSVVUG00000020403) #30	RASL10B (ENSVVUG00000020398) #31	GAS2L2 (ENSVVUG00000020397)	ENSVVUG00000020395 #32	C17orf50 (ENSVVUG00000020393) #33	MMP28 (ENSVVUG00000020380) #34	TAF15 (ENSVVUG00000020375) #35	HEATR9 (ENSVVUG00000020369) #36
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000157411 #10	ENSGT00740000117022	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT01100000263482.F ##37	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35
Ursidae	ANCESTRAL SPECIES	18	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT01100000263482.F ##37	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35
Ursus	ANCESTRAL SPECIES	8	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00940000153112.E.f.b.c.b	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35
Polar bear	MODERN SPECIES	192	PSMD11 (ENSUMAG00000015400) #8	CDK5R1 (ENSUMAG00000015534) #9	MYO1D (ENSUMAG00000015550) #10	ENSUMAG00000015571	TMEM98 (ENSUMAG00000015573) #11	ENSUMAG00000015581 #12	ASIC2 (ENSUMAG00000015591) #13	ENSUMAG00000015601 ##13	CCL2 (ENSUMAG00000015604) ##37	CCL7 (ENSUMAG00000015608) ##37	CCL8 (ENSUMAG00000015612) #16	CCL13 (ENSUMAG00000015615) #17	ENSUMAG00000015623 #18	CCT6B (ENSUMAG00000015641) #20	ZNF830 (ENSUMAG00000015731) #21	LIG3 (ENSUMAG00000015895) #22	RFFL (ENSUMAG00000016713) #23	RAD51D (ENSUMAG00000016723) #24	FNDC8 (ENSUMAG00000016726) #25	NLE1 (ENSUMAG00000016727) #26	UNC45B (ENSUMAG00000016733) #27	ENSUMAG00000016792 #28	ENSUMAG00000016794 #28	ENSUMAG00000016797 ##28	SLFN14 (ENSUMAG00000016804) ##28	PEX12 (ENSUMAG00000016839) #29	AP2B1 (ENSUMAG00000016846) #30	GAS2L2 (ENSUMAG00000016854)	TAF15 (ENSUMAG00000016876) #35	HEATR9 (ENSUMAG00000016881) #36	ENSUMAG00000016895 #37
American black bear	MODERN SPECIES	4030																LIG3 (ENSUAMG00000022474) #22	RFFL (ENSUAMG00000022450) #23	ENSUAMG00000022398 #24
Giant Panda	MODERN SPECIES	4	ZNF207 (ENSAMEG00000005671) #7	PSMD11 (ENSAMEG00000005693) #8	CDK5R1 (ENSAMEG00000019817) #9	MYO1D (ENSAMEG00000005735) #10	TMEM98 (ENSAMEG00000026035) #11	SPACA3 (ENSAMEG00000005761) #12	ASIC2 (ENSAMEG00000005774) #13	ENSAMEG00000025929 ##37	CCL7 (ENSAMEG00000028962) ##37	CCL8 (ENSAMEG00000029965) #16	CCL13 (ENSAMEG00000023685) #17	CCL1 (ENSAMEG00000005795) ##37	TMEM132E (ENSAMEG00000014409) #19	CCT6B (ENSAMEG00000014473) #20	ZNF830 (ENSAMEG00000019495) #21	LIG3 (ENSAMEG00000014509) #22	RFFL (ENSAMEG00000014564) #23	RAD51D (ENSAMEG00000014577) #24	FNDC8 (ENSAMEG00000014606) #25	NLE1 (ENSAMEG00000014614) #26	UNC45B (ENSAMEG00000014637) #27	SLFN5 (ENSAMEG00000014706) #28	ENSAMEG00000014720 ##28	SLFN14 (ENSAMEG00000014725) ##28	PEX12 (ENSAMEG00000014739) #29	AP2B1 (ENSAMEG00000014745) #30	GAS2L2 (ENSAMEG00000014830)	RASL10B (ENSAMEG00000014822) #31	C17orf50 (ENSAMEG00000027935) #33	MMP28 (ENSAMEG00000014834) #34	ENSAMEG00000014860 #35
Mustelinae	DUPLICATION
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00740000117022	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01100000263482.F ##37	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492.c #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35	ENSGT00390000007247 #36	ENSGT01100000263482.D #37
American mink	MODERN SPECIES	37	ZNF207 (ENSNVIG00000019388) #7	PSMD11 (ENSNVIG00000019522) #8	CD5R1 (ENSNVIG00000019539) #9	MYO1D (ENSNVIG00000019549) #10	TMM98 (ENSNVIG00000019571) #11	SPACA3 (ENSNVIG00000019598) #12	ASIC2 (ENSNVIG00000019610) #13	CCL2 (ENSNVIG00000019643) ##37	ENSNVIG00000019653 #15	CCL8 (ENSNVIG00000019665) #16	CCL13 (ENSNVIG00000019676) #17	CCL1 (ENSNVIG00000019684) ##37	TMEM132E (ENSNVIG00000019694) #19	CCT6B (ENSNVIG00000019712) #20	ZNF830 (ENSNVIG00000019817) #21	LIG3 (ENSNVIG00000019831) #22	RFFL (ENSNVIG00000019960) #23	RAD51D (ENSNVIG00000020004) #24	FNDC8 (ENSNVIG00000020043) #25	NLE1 (ENSNVIG00000020060) #26	UNC45B (ENSNVIG00000020104) #27	SLFN14 (ENSNVIG00000020175) ##28	PEX12 (ENSNVIG00000020190) #29	ENSNVIG00000020204 #30	RSLAB (ENSNVIG00000020253) #31	GAS2L2 (ENSNVIG00000020273)	C17orf50 (ENSNVIG00000020299) #33	MMP28 (ENSNVIG00000020319) #34	TAF15 (ENSNVIG00000020344) #35	HEATR9 (ENSNVIG00000020408) #36	CCL5 (ENSNVIG00000020449) #37
Ferret	MODERN SPECIES	181	TMEM98 (ENSMPUG00000014780) #11	SPACA3 (ENSMPUG00000014796) #12	ASIC2 (ENSMPUG00000014834) #13	ENSMPUG00000014838	ENSMPUG00000014840	CCL2 (ENSMPUG00000014841) ##37	CCL7 (ENSMPUG00000014843) ##37	CCL8 (ENSMPUG00000014845) #16	CCL13 (ENSMPUG00000014846) #17	ENSMPUG00000014849 #18	TMEM132E (ENSMPUG00000014852) #19	ENSMPUG00000014853	CCT6B (ENSMPUG00000014856) #20	ZNF830 (ENSMPUG00000019518) #21	ENSMPUG00000019522	ENSMPUG00000014859 #22	RFFL (ENSMPUG00000014861) #23	ENSMPUG00000014877	RAD51D (ENSMPUG00000014878) #24	FNDC8 (ENSMPUG00000014880) #25	NLE1 (ENSMPUG00000014893) #26	UNC45B (ENSMPUG00000014896) #27	SLFN14 (ENSMPUG00000014899) ##28	PEX12 (ENSMPUG00000014908) #29	AP2B1 (ENSMPUG00000014910) #30	RASL10B (ENSMPUG00000014916) #31	GAS2L2 (ENSMPUG00000014920)	MMP28 (ENSMPUG00000014927) #34	TAF15 (ENSMPUG00000014948) #35	HEATR9 (ENSMPUG00000014952) #36	ENSMPUG00000014962 #37
Mustelinae	ANCESTRAL SPECIES																	ENSGT00940000156492.d #22
Ferret	MODERN SPECIES	242	SIDT1 (ENSMPUG00000000291)	USF3 (ENSMPUG00000000290)	NAA50 (ENSMPUG00000000288)	ATP6V1A (ENSMPUG00000000286)	GRAMD1C (ENSMPUG00000000284)	ZDHHC23 (ENSMPUG00000000282)	CCDC191 (ENSMPUG00000000280)	QTRT2 (ENSMPUG00000000279)	DRD3 (ENSMPUG00000000277)	ENSMPUG00000000275	TIGIT (ENSMPUG00000000274)	ZBTB20 (ENSMPUG00000000272)	GAP43 (ENSMPUG00000000271)	LSAMP (ENSMPUG00000000269)	ENSMPUG00000000264	ENSMPUG00000000262 #22	ENSMPUG00000018922	ENSMPUG00000000261	IGSF11 (ENSMPUG00000000260)	ENSMPUG00000000259	UPK1B (ENSMPUG00000000258)	B4GALT4 (ENSMPUG00000000257)	ENSMPUG00000000254
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00830000128449	ENSGT00940000155641	ENSGT00940000158838	ENSGT00390000005481	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00390000003008	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35
Equus	ANCESTRAL SPECIES		ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.a.a.b ##28	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33
Donkey	MODERN SPECIES	4	MYO1D (ENSEASG00005010913) #10	TMEM98 (ENSEASG00005010917) #11	SPACA3 (ENSEASG00005010921) #12	ASIC2 (ENSEASG00005010930) #13	ENSEASG00005001865	ENSEASG00005035074	CCL2 (ENSEASG00005026206) ##37	CCL7 (ENSEASG00005028946) ##37	CCL11 (ENSEASG00005029284) ##37	CCL8 (ENSEASG00005028357) #16	ENSEASG00005033288 #17	ENSEASG00005036948 #18	TMEM132E (ENSEASG00005010955) #19	CCT6B (ENSEASG00005010982) #20	ZNF830 (ENSEASG00005011187) #21	LIG3 (ENSEASG00005011191) #22	RFFL (ENSEASG00005011194) #23	RAD51D (ENSEASG00005011196) #24	FNDC8 (ENSEASG00005011197) #25	NLE1 (ENSEASG00005011199) #26	UNC45B (ENSEASG00005011201) #27	SLFN5 (ENSEASG00005011202) #28	ENSEASG00005036238 ##28	ENSEASG00005011206 ##28	ENSEASG00005011205 ##28	SLFN14 (ENSEASG00005011210) ##28	PEX12 (ENSEASG00005035401) #29	AP2B1 (ENSEASG00005011219) #30	RASL10B (ENSEASG00005011223) #31	GAS2L2 (ENSEASG00005011225)	C17orf50 (ENSEASG00005028802) #33
Horse	MODERN SPECIES	2	RNF135 (ENSECAG00000014806)	RHOT1 (ENSECAG00000009478)	C11H17orf75 (ENSECAG00000001756)	ZNF207 (ENSECAG00000017464) #7	PSMD11 (ENSECAG00000014306) #8	CDK5R1 (ENSECAG00000004006) #9	MYO1D (ENSECAG00000009709) #10	TMEM98 (ENSECAG00000007610) #11	SPACA3 (ENSECAG00000005842) #12	ASIC2 (ENSECAG00000000922) #13	CCL8 (ENSECAG00000034282) #17	ENSECAG00000036873 #18	TMEM132E (ENSECAG00000023816) #19	ZNF830 (ENSECAG00000003872) #21	CCT6B (ENSECAG00000021342) #20	LIG3 (ENSECAG00000016416) #22	RFFL (ENSECAG00000015502) #23	RAD51D (ENSECAG00000014139) #24	FNDC8 (ENSECAG00000014023) #25	NLE1 (ENSECAG00000011072) #26	UNC45B (ENSECAG00000001034) #27	SLFN5 (ENSECAG00000017186) #28	ENSECAG00000047377 ##28	ENSECAG00000060188	ENSECAG00000017158 ##28	ENSECAG00000039393 ##28	PEX12 (ENSECAG00000015368) #29	AP2B1 (ENSECAG00000009033) #30	RASL10B (ENSECAG00000008089) #31	GAS2L2 (ENSECAG00000007690)	C11H17orf50 (ENSECAG00000007503) #33
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00830000128449	ENSGT00940000155641	ENSGT00940000158838	ENSGT00390000005481	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35
Microchiroptera	ANCESTRAL SPECIES		ENSGT00830000128449	ENSGT00940000155641	ENSGT00940000158838	ENSGT00390000005481	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.b #28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35
Microbat	MODERN SPECIES	1324														CCT6B (ENSMLUG00000012459) #20	ZNF830 (ENSMLUG00000012466) #21	LIG3 (ENSMLUG00000012470) #22	RFFL (ENSMLUG00000012490) #23	RAD51D (ENSMLUG00000012495) #24	FNDC8 (ENSMLUG00000012504) #25	NLE1 (ENSMLUG00000012506) #26	UNC45B (ENSMLUG00000012519) #27	ENSMLUG00000029329 #28	ENSMLUG00000017543 ##28	SLFN14 (ENSMLUG00000002831) ##28	PEX12 (ENSMLUG00000002834) #29	ENSMLUG00000002837 #30	RASL10B (ENSMLUG00000002848) #31	GAS2L2 (ENSMLUG00000015013)	C17orf50 (ENSMLUG00000002867) #33	MMP28 (ENSMLUG00000002856) #34	TAF15 (ENSMLUG00000002870) #35
Greater horseshoe bat	MODERN SPECIES	13	ZNF207 (ENSRFEG00010019158) #7	ENSRFEG00010019307	PSMD11 (ENSRFEG00010019338) #8	CDK5R1 (ENSRFEG00010019423) #9	MYO1D (ENSRFEG00010019451) #10	ENSRFEG00010019534	TMEM98 (ENSRFEG00010019564) #11	SPACA3 (ENSRFEG00010019589) #12	ASIC2 (ENSRFEG00010019642) #13	ENSRFEG00010019773	CCL2 (ENSRFEG00010019809) ##37	CCL8 (ENSRFEG00010019872) #16	TMEM132E (ENSRFEG00010019902) #19	CCT6B (ENSRFEG00010020082) #20	ZNF830 (ENSRFEG00010020329) #21	LIG3 (ENSRFEG00010020352) #22	RFFL (ENSRFEG00010020407) #23	RAD51D (ENSRFEG00010020450) #24	FNDC8 (ENSRFEG00010020501) #25	NLE1 (ENSRFEG00010020540) #26	UNC45B (ENSRFEG00010020648) #27	ENSRFEG00010020802 ##28	SLFN14 (ENSRFEG00010020815) ##28	PEX12 (ENSRFEG00010020841) #29	AP2B1 (ENSRFEG00010020872) #30	RASL10B (ENSRFEG00010020930) #31	GAS2L2 (ENSRFEG00010020946)	C17orf50 (ENSRFEG00010020982) #33	MMP28 (ENSRFEG00010021011) #34	TAF15 (ENSRFEG00010021040) #35	HEATR9 (ENSRFEG00010021087) #36
Megabat	MODERN SPECIES	548														CCT6B (ENSPVAG00000013423) #20	ZNF830 (ENSPVAG00000013426) #21	LIG3 (ENSPVAG00000013427) #22	RFFL (ENSPVAG00000013428) #23
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Suina	ANCESTRAL SPECIES		ENSGT00390000005481	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35	ENSGT00390000007247 #36
Pig	MODERN SPECIES	3	CDK5R1 (ENSSSCG00000017730) #9	MYO1D (ENSSSCG00000017728) #10	TMEM98 (ENSSSCG00000017727) #11	SPACA3 (ENSSSCG00000017726) #12	ASIC2 (ENSSSCG00000040177) #13	ENSSSCG00000058804	ENSSSCG00000034396	ENSSSCG00000031620	CCL2 (ENSSSCG00000017723) ##37	CCL11 (ENSSSCG00000044762) ##37	CCL8 (ENSSSCG00000040648) #16	CCL1 (ENSSSCG00000017720) #18	TMEM132E (ENSSSCG00000022987) #19	CCT6B (ENSSSCG00000022196) #20	ZNF830 (ENSSSCG00000056119) #21	LIG3 (ENSSSCG00000024770) #22	RFFL (ENSSSCG00000032552) #23	RAD51D (ENSSSCG00000061966) #24	FNDC8 (ENSSSCG00000021617) #25	NLE1 (ENSSSCG00000025796) #26	UNC45B (ENSSSCG00000017717) #27	ENSSSCG00000032652 ##28	SLFN14 (ENSSSCG00000031114) ##28	PEX12 (ENSSSCG00000017713) #29	AP2B1 (ENSSSCG00000017712) #30	RASL10B (ENSSSCG00000036746) #31	GAS2L2 (ENSSSCG00000039395)	MMP28 (ENSSSCG00000034440) #34	TAF15 (ENSSSCG00000017707) #35	HEATR9 (ENSSSCG00000017706) #36	CCL5 (ENSSSCG00000017705) #37
Chacoan peccary	MODERN SPECIES	144	C17orf75 (ENSCWAG00000013929)	ZNF207 (ENSCWAG00000013991) #7	PSMD11 (ENSCWAG00000014200) #8	CDK5R1 (ENSCWAG00000014253) #9	MYO1D (ENSCWAG00000014304) #10	TMEM98 (ENSCWAG00000014817) #11	SPACA3 (ENSCWAG00000014931) #12	ASIC2 (ENSCWAG00000015037) #13	CCL2 (ENSCWAG00000015205) ##37	CCL11 (ENSCWAG00000015240) ##37	CCL8 (ENSCWAG00000015268) #16	ENSCWAG00000015299 #18	TMEM132E (ENSCWAG00000015350) #19	CCT6B (ENSCWAG00000015565) #20	ZNF830 (ENSCWAG00000015919) #21	LIG3 (ENSCWAG00000015948) #22	RFFL (ENSCWAG00000016017) #23	RAD51D (ENSCWAG00000016105) #24	FNDC8 (ENSCWAG00000016272) #25	NLE1 (ENSCWAG00000006273) #26	UNC45B (ENSCWAG00000006444) #27	ENSCWAG00000006739 ##28	SLFN14 (ENSCWAG00000006953) ##28	PEX12 (ENSCWAG00000007111) #29	AP2B1 (ENSCWAG00000007160) #30	RASL10B (ENSCWAG00000007260) #31	GAS2L2 (ENSCWAG00000007285)	C17orf50 (ENSCWAG00000007362) #33	MMP28 (ENSCWAG00000007423) #34	TAF15 (ENSCWAG00000007501) #35	HEATR9 (ENSCWAG00000007560) #36
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b ##30	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33
Camelidae	ANCESTRAL SPECIES	46	ENSGT00390000005481	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27
Arabian camel	MODERN SPECIES	7	ENSCDRG00005018176 #7	PSMD11 (ENSCDRG00005018315) #8	CDK5R1 (ENSCDRG00005018360) #9	MYO1D (ENSCDRG00005018383) #10	TMEM98 (ENSCDRG00005018566) #11	ENSCDRG00005018607 #12	ENSCDRG00005018651 #12	ASIC2 (ENSCDRG00005018676) #13	CCL2 (ENSCDRG00005018730) ##37	ENSCDRG00005018754 ##37	CCL8 (ENSCDRG00005018771) #16	ENSCDRG00005018782 #18	TMEM132E (ENSCDRG00005018809) #19	CCT6B (ENSCDRG00005018987) #20	ZNF830 (ENSCDRG00005019235) #21	LIG3 (ENSCDRG00005019260) #22	RFFL (ENSCDRG00005019298) #23	RAD51D (ENSCDRG00005008720) #24	FNDC8 (ENSCDRG00005008856) #25	NLE1 (ENSCDRG00005008920) #26	UNC45B (ENSCDRG00005009329) #27	ENSCDRG00005009987	ENSCDRG00005010031	ENSCDRG00005010071	NGFR (ENSCDRG00005010099)	NXPH3 (ENSCDRG00005010150)	SPOP (ENSCDRG00005010198)	SLC35B1 (ENSCDRG00005010268)	FAM117A (ENSCDRG00005010358)	KAT7 (ENSCDRG00005010423)	TAC4 (ENSCDRG00005010878)
Alpaca	MODERN SPECIES	392															CCT6B (ENSVPAG00000000151) #20	LIG3 (ENSVPAG00000000153) #22	ENSVPAG00000000156 #23
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b ##30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Pecora	ANCESTRAL SPECIES	1	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b.a ##30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Yarkand deer	MODERN SPECIES	28	PSMD11 (ENSCHYG00000005685) #8	CDK5R1 (ENSCHYG00000005666) #9	MYO1D (ENSCHYG00000005522) #10	TMEM98 (ENSCHYG00000005448) #11	SPACA3 (ENSCHYG00000005400) #12	ENSCHYG00000005385	ENSCHYG00000005365	ASIC2 (ENSCHYG00000005233) #13	CCL2 (ENSCHYG00000004987) ##37	CCL11 (ENSCHYG00000004959) ##37	ENSCHYG00000004663 #16	ENSCHYG00000004652 #18	TMEM132E (ENSCHYG00000004615) #19	CCT6B (ENSCHYG00000004528) #20	ZNF830 (ENSCHYG00000004488) #21	LIG3 (ENSCHYG00000004420) #22	ENSCHYG00000004295 #24	FNDC8 (ENSCHYG00000004217) #25	NLE1 (ENSCHYG00000004131) #26	UNC45B (ENSCHYG00000004023) #27	ENSCHYG00000003986 ##28	SLFN14 (ENSCHYG00000003977) ##28	PEX12 (ENSCHYG00000003961) #29	ENSCHYG00000003898 ##30	RASL10B (ENSCHYG00000003865) #31	GAS2L2 (ENSCHYG00000003847)	C17orf50 (ENSCHYG00000003832) #33	MMP28 (ENSCHYG00000003809) #34	TAF15 (ENSCHYG00000003703) #35	HEATR9 (ENSCHYG00000003637) #36	ENSCHYG00000003613 #37
Percora_a	ANCESTRAL SPECIES	2	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095.c.a #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b.a ##30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Siberian musk deer	MODERN SPECIES	1135	ZNF207 (ENSMMSG00000014169) #7	PSMD11 (ENSMMSG00000014125) #8	CDK5R1 (ENSMMSG00000014112) #9	MYO1D (ENSMMSG00000014045) #10	TMEM98 (ENSMMSG00000013992) #11	SPACA3 (ENSMMSG00000013944) #12	ASIC2 (ENSMMSG00000013849) #13	CCL2 (ENSMMSG00000013816) ##37	CCL11 (ENSMMSG00000013803) ##37	CCL8 (ENSMMSG00000013783) #16	CCL1 (ENSMMSG00000013764) ##37	ENSMMSG00000013748	TMEM132E (ENSMMSG00000013674) #19	CCT6B (ENSMMSG00000013474) #20	ZNF830 (ENSMMSG00000013439) #21	LIG3 (ENSMMSG00000013344) #22	RFFL (ENSMMSG00000013303) #23	ENSMMSG00000013244 #24	FNDC8 (ENSMMSG00000013206) #25	NLE1 (ENSMMSG00000013105) #26	UNC45B (ENSMMSG00000012816) #27	ENSMMSG00000012754 ##28	ENSMMSG00000012719 ##28	SLFN14 (ENSMMSG00000012689) ##28	PEX12 (ENSMMSG00000012661) #29	ENSMMSG00000012554 ##30	RASL10B (ENSMMSG00000012523) #31	GAS2L2 (ENSMMSG00000012477)	C17orf50 (ENSMMSG00000012439) #33	MMP28 (ENSMMSG00000012400) #34	TAF15 (ENSMMSG00000012333) #35
Bovidae	ANCESTRAL SPECIES	2	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095.c.a #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b.a ##30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Bovinae	ANCESTRAL SPECIES		ENSGT00390000005481	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095.c.a #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b.a ##30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Bos	ANCESTRAL SPECIES	1	ENSGT00390000005481	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095.c.a #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b.a ##30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Bos_a	ANCESTRAL SPECIES		ENSGT00390000005481	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095.c.a #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b.a ##30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Domestic yak	MODERN SPECIES	10	ZNF207 (ENSBGRG00000018994) #7	ENSBGRG00000019374	PSMD11 (ENSBGRG00000019390) #8	CDK5R1 (ENSBGRG00000019524) #9	MYO1D (ENSBGRG00000019568) #10	TMEM98 (ENSBGRG00000019780) #11	ENSBGRG00000019895 #12	ASIC2 (ENSBGRG00000019964) #13	ENSBGRG00000020251 ##37	CCL11 (ENSBGRG00000020299) ##37	ENSBGRG00000020373 #16	ENSBGRG00000020420 #18	TMEM132E (ENSBGRG00000020451) #19	CCT6B (ENSBGRG00000020692) #20	ZNF830 (ENSBGRG00000021136) #21	LIG3 (ENSBGRG00000021180) #22	RFFL (ENSBGRG00000021399) #23	ENSBGRG00000021490 #24	FNDC8 (ENSBGRG00000021652) #25	NLE1 (ENSBGRG00000021708) #26	UNC45B (ENSBGRG00000022051) #27	ENSBGRG00000022720 ##28	ENSBGRG00000022760 ##28	SLFN14 (ENSBGRG00000022772) ##28	PEX12 (ENSBGRG00000022808) #29	ENSBGRG00000022860 ##30	RASL10B (ENSBGRG00000023043) #31	GAS2L2 (ENSBGRG00000023089)	C17orf50 (ENSBGRG00000023233) #33	MMP28 (ENSBGRG00000023311) #34	ENSBGRG00000023398
Wild yak	MODERN SPECIES	1117								ENSBMUG00000013556 ##13	CCL2 (ENSBMUG00000013532) ##37	CCL11 (ENSBMUG00000013523) ##37	ENSBMUG00000013512 #16	CCL1 (ENSBMUG00000013488) ##37	TMEM132E (ENSBMUG00000013479) #19	CCT6B (ENSBMUG00000013437) #20	ZNF830 (ENSBMUG00000013328) #21	LIG3 (ENSBMUG00000013309) #22	RFFL (ENSBMUG00000013239) #23	RAD51D (ENSBMUG00000013181) #24	FNDC8 (ENSBMUG00000013103) #25	NLE1 (ENSBMUG00000013085) #26	UNC45B (ENSBMUG00000013040) #27	ENSBMUG00000012916 ##28	ENSBMUG00000012900 ##28	SLFN14 (ENSBMUG00000012865) ##28	PEX12 (ENSBMUG00000012839) #29	ENSBMUG00000012814 ##30	RASL10B (ENSBMUG00000012740) #31	ENSBMUG00000012734	ENSBMUG00000012720 #32	C17orf50 (ENSBMUG00000012713) #33	ENSBMUG00000012696
Bos_b	ANCESTRAL SPECIES	38	ENSGT00390000005481	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095.c.a #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT01100000263480.a.b.a.b.b.b.b.a.a	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b.a ##30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Cow	MODERN SPECIES	10	C19H17orf75 (ENSBTAG00000020994)	ZNF207 (ENSBTAG00000008883) #7	PSMD11 (ENSBTAG00000018897) #8	CDK5R1 (ENSBTAG00000004475) #9	MYO1D (ENSBTAG00000015527) #10	TMEM98 (ENSBTAG00000008913) #11	SPACA3 (ENSBTAG00000000344) #12	ASIC2 (ENSBTAG00000025200) #13	CCL2 (ENSBTAG00000037811) ##37	CCL11 (ENSBTAG00000004129) ##37	CCL8 (ENSBTAG00000014113) #16	CCL1 (ENSBTAG00000008832) #18	TMEM132E (ENSBTAG00000002680) #19	CCT6B (ENSBTAG00000020338) #20	ZNF830 (ENSBTAG00000020340) #21	LIG3 (ENSBTAG00000018689) #22	RFFL (ENSBTAG00000013645) #23	RAD51D (ENSBTAG00000019082) #24	FNDC8 (ENSBTAG00000019092) #25	NLE1 (ENSBTAG00000019094) #26	UNC45B (ENSBTAG00000002898) #27	ENSBTAG00000025219 ##28	ENSBTAG00000051396	ENSBTAG00000019437 ##28	SLFN14 (ENSBTAG00000039206) ##28	PEX12 (ENSBTAG00000019723) #29	AP2B1 (ENSBTAG00000020316) ##30	RASL10B (ENSBTAG00000018518) #31	GAS2L2 (ENSBTAG00000018519)	C19H17orf50 (ENSBTAG00000045621) #33	MMP28 (ENSBTAG00000006086) #34
Hybrid Bos Indicus	MODERN SPECIES	10	ZNF207 (ENSBIXG00005019493) #7	ENSBIXG00005019526	PSMD11 (ENSBIXG00005019559) #8	CDK5R1 (ENSBIXG00005019571) #9	MYO1D (ENSBIXG00005019665) #10	TMEM98 (ENSBIXG00005019737) #11	ENSBIXG00005019792 #12	ASIC2 (ENSBIXG00005006881) #13	CCL2 (ENSBIXG00005006654) ##37	CCL11 (ENSBIXG00005003267) ##37	ENSBIXG00005019984 #16	ENSBIXG00005003275 #18	TMEM132E (ENSBIXG00005003295) #19	CCT6B (ENSBIXG00005020356) #20	ZNF830 (ENSBIXG00005000019) #21	LIG3 (ENSBIXG00005020425) #22	RFFL (ENSBIXG00005020511) #23	RAD51D (ENSBIXG00005007727) #24	FNDC8 (ENSBIXG00005020624) #25	NLE1 (ENSBIXG00005020696) #26	UNC45B (ENSBIXG00005020949) #27	ENSBIXG00005003547 ##28	ENSBIXG00005021013	ENSBIXG00005021034 ##28	SLFN14 (ENSBIXG00005021050) ##28	PEX12 (ENSBIXG00005021083) #29	ENSBIXG00005021182 ##30	RASL10B (ENSBIXG00005021225) #31	GAS2L2 (ENSBIXG00005021333)	C17orf50 (ENSBIXG00005007305) #33	MMP28 (ENSBIXG00005021408) #34
American bison	MODERN SPECIES	3331	RHBDL3 (ENSBBBG00000016033)	C17orf75 (ENSBBBG00000016016)	ZNF207 (ENSBBBG00000003982) #7	PSMD11 (ENSBBBG00000015842) #8	CDK5R1 (ENSBBBG00000015765) #9	MYO1D (ENSBBBG00000015737) #10	TMEM98 (ENSBBBG00000015612) #11	SPACA3 (ENSBBBG00000003890) #12	ASIC2 (ENSBBBG00000000789) #13	CCL2 (ENSBBBG00000015537) ##37	CCL11 (ENSBBBG00000015529) ##37	ENSBBBG00000015515 #16	TMEM132E (ENSBBBG00000003856) #19	CCT6B (ENSBBBG00000015432) #20	ZNF830 (ENSBBBG00000003814) #21	LIG3 (ENSBBBG00000003485) #22	RFFL (ENSBBBG00000001330) #23	RAD51D (ENSBBBG00000015308) #24	FNDC8 (ENSBBBG00000015233) #25	NLE1 (ENSBBBG00000003521) #26	UNC45B (ENSBBBG00000003753) #27	ENSBBBG00000000800 ##28	ENSBBBG00000015007 ##28	SLFN14 (ENSBBBG00000003718) ##28	PEX12 (ENSBBBG00000014984) #29	ENSBBBG00000014960 ##30	RASL10B (ENSBBBG00000000919) #31	GAS2L2 (ENSBBBG00000000929)	MMP28 (ENSBBBG00000000966) #34	TAF15 (ENSBBBG00000000998) #35	HEATR9 (ENSBBBG00000001077) #36
Caprinae	ANCESTRAL SPECIES	1	ENSGT00730000111057 #7	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095.c.a #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.c.b.a ##30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00390000007830 #33	ENSGT00940000159596 #34	ENSGT00940000156438 #35	ENSGT00390000007247 #36
Rambouillet Sheep	MODERN SPECIES	2	ZNF207 (ENSOARG00020013074) #7	PSMD11 (ENSOARG00020013882) #8	CDK5R1 (ENSOARG00020014060) #9	MYO1D (ENSOARG00020014169) #10	RPS26 (ENSOARG00020016985)	TMEM98 (ENSOARG00020017022) #11	SPACA3 (ENSOARG00020017184) #12	ASIC2 (ENSOARG00020017317) #13	CCL2 (ENSOARG00020017573) ##37	CCL11 (ENSOARG00020017624) ##37	CCL8 (ENSOARG00020017661) #16	CCL1 (ENSOARG00020017691) ##37	TMEM132E (ENSOARG00020017730) #19	CCT6B (ENSOARG00020018028) #20	ZNF830 (ENSOARG00020018540) #21	LIG3 (ENSOARG00020018561) #22	RFFL (ENSOARG00020018710) #23	ENSOARG00020018814 #24	FNDC8 (ENSOARG00020018903) #25	ENSOARG00020018949 #26	ENSOARG00020018986 #26	UNC45B (ENSOARG00020019061) #27	ENSOARG00020019677	ENSOARG00020019723 ##28	SLFN14 (ENSOARG00020019977) ##28	PEX12 (ENSOARG00020020025) #29	AP2B1 (ENSOARG00020020066) ##30	ENSOARG00020020386	RASL10B (ENSOARG00020020400) #31	C17orf50 (ENSOARG00020020706) #33	MMP28 (ENSOARG00020020795) #34
Goat	MODERN SPECIES	10	ZNF207 (ENSCHIG00000013026) #7	PSMD11 (ENSCHIG00000008139) #8	CDK5R1 (ENSCHIG00000004376) #9	MYO1D (ENSCHIG00000014922) #10	TMEM98 (ENSCHIG00000027044) #11	SPACA3 (ENSCHIG00000014732) #12	ASIC2 (ENSCHIG00000026032) #13	ENSCHIG00000014289 ##13	CCL2 (ENSCHIG00000023567) ##37	CCL11 (ENSCHIG00000012968) ##37	CCL8 (ENSCHIG00000020074) #16	ENSCHIG00000002408 #18	TMEM132E (ENSCHIG00000015468) #19	CCT6B (ENSCHIG00000023739) #20	ZNF830 (ENSCHIG00000012740) #21	LIG3 (ENSCHIG00000023884) #22	RFFL (ENSCHIG00000012667) #23	ENSCHIG00000019605 #24	FNDC8 (ENSCHIG00000027164) #25	NLE1 (ENSCHIG00000012536) #26	UNC45B (ENSCHIG00000018294) #27	ENSCHIG00000026701 ##28	SLFN14 (ENSCHIG00000026874) ##28	PEX12 (ENSCHIG00000025650) #29	ENSCHIG00000019283 ##30	RASL10B (ENSCHIG00000018183) #31	GAS2L2 (ENSCHIG00000026688)	C17orf50 (ENSCHIG00000018412) #33	MMP28 (ENSCHIG00000027070) #34	ENSCHIG00000027235 #35	HEATR9 (ENSCHIG00000021394) #36
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT01100000263482.F ##37	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Odontoceti	ANCESTRAL SPECIES	17	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209 #29	ENSGT00940000155206.d #30	ENSGT00940000160764 #31	ENSGT00940000162866	ENSGT00940000154849.a #32	ENSGT00390000007830 #33	ENSGT00940000159596 #34
Odontoceti_a	ANCESTRAL SPECIES	18	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.a.a ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT01100000263482.F ##37	ENSGT00940000158479 #19	ENSGT00940000156339 #20	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209.f #29	ENSGT00940000155206.c.a ##30
Odontoceti_b	ANCESTRAL SPECIES	20	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01030000234760 #18	ENSGT01100000263482.F ##37	ENSGT00940000158479 #19	ENSGT01010000228931	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209.f #29	ENSGT00940000155206.c.a ##30
Monodontidae	ANCESTRAL SPECIES	21	ENSGT00530000063301.a.a #8	ENSGT00390000008812.b.b #9	ENSGT00940000157411 #10	ENSGT00390000012062 #11	ENSGT00940000161810 #12	ENSGT00940000154991.b #13	ENSGT00940000154991.a.b ##13	ENSGT01100000263482.A.a.a.d.a.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.a.b ##37	ENSGT01100000263482.A.a.a.d.a.b #16	ENSGT01100000263482.A.a.a.d.b #17	ENSGT01100000263482.F ##37	ENSGT00940000158479 #19	ENSGT01010000228931	ENSGT00390000012151 #21	ENSGT00940000156492 #22	ENSGT00390000012719.a #23	ENSGT00940000159095 #24	ENSGT00390000006458 #25	ENSGT00940000157881 #26	ENSGT00940000157654 #27	ENSGT00410000025651.A.b.a.a.b ##28	ENSGT00410000025651.A.b.a.a.a.a ##28	ENSGT00410000025651.A.b.b ##28	ENSGT00390000016209.f #29
Beluga whale	MODERN SPECIES	117										FGF11 (ENSDLEG00000018046)	ENSDLEG00000018053	TMEM132E (ENSDLEG00000018074) #19	ENSDLEG00000018084	ENSDLEG00000018092	ZNF830 (ENSDLEG00000018101) #21	LIG3 (ENSDLEG00000018120) #22	RFFL (ENSDLEG00000018150) #23	RAD51D (ENSDLEG00000018178) #24	FNDC8 (ENSDLEG00000018193) #25	NLE1 (ENSDLEG00000018206) #26	UNC45B (ENSDLEG00000018224) #27	ENSDLEG00000018247 ##28	ENSDLEG00000018271 ##28	SLFN14 (ENSDLEG00000018343) ##28
Narwhal	MODERN SPECIES	316	CDK5R1 (ENSMMNG00015021171) #9	MYO1D (ENSMMNG00015021191) #10	TMEM98 (ENSMMNG00015021221) #11	SPACA3 (ENSMMNG00015021243) #12	ASIC2 (ENSMMNG00015021265) #13	CCL2 (ENSMMNG00015021287) ##37	ENSMMNG00015021298	CCL11 (ENSMMNG00015021303) ##37	CCL8 (ENSMMNG00015021312) #16	ENSMMNG00015021318 #17	CCL1 (ENSMMNG00015021332) ##37	TMEM132E (ENSMMNG00015021348) #19	ENSMMNG00015021366	ENSMMNG00015015650	ZNF830 (ENSMMNG00015015663) #21	LIG3 (ENSMMNG00015015691) #22	RFFL (ENSMMNG00015015776) #23	RAD51D (ENSMMNG00015015851) #24	FNDC8 (ENSMMNG00015015917) #25	NLE1 (ENSMMNG00015015965) #26	UNC45B (ENSMMNG00015016104) #27	ENSMMNG00015016251 ##28	ENSMMNG00015016293 ##28	SLFN14 (ENSMMNG00015016335) ##28	PEX12 (ENSMMNG00015016360) #29
Vaquita	MODERN SPECIES	12	MMD (ENSPSNG00000012484)	HLF (ENSPSNG00000012389)	STXBP4 (ENSPSNG00000012300)	ENSPSNG00000012227	ENSPSNG00000012124	GPS2 (ENSPSNG00000012090)	ENSPSNG00000012037	ENSPSNG00000011980	CA10 (ENSPSNG00000011791)	ENSPSNG00000011630	TMEM132E (ENSPSNG00000011353) #19	ENSPSNG00000011280	ENSPSNG00000011250	ENSPSNG00000011220	ZNF830 (ENSPSNG00000011195) #21	LIG3 (ENSPSNG00000011102) #22	RFFL (ENSPSNG00000010922) #23	RAD51D (ENSPSNG00000010752) #24	FNDC8 (ENSPSNG00000010677) #25	NLE1 (ENSPSNG00000010570) #26	UNC45B (ENSPSNG00000010204) #27	ENSPSNG00000010100 ##28	ENSPSNG00000010053 ##28	SLFN14 (ENSPSNG00000009991) ##28	ENSPSNG00000009938 #29	ENSPSNG00000009891	ENSPSNG00000009744	ENSPSNG00000009692	ENSPSNG00000009606 #29	ENSPSNG00000009585 ##30	ENSPSNG00000022370 #18
Dolphin	MODERN SPECIES	320														CCT6B (ENSTTRG00000015442) #20	ZNF830 (ENSTTRG00000015462) #21	LIG3 (ENSTTRG00000015470) #22	RFFL (ENSTTRG00000015494) #23	RAD51D (ENSTTRG00000015503) #24	FNDC8 (ENSTTRG00000015515) #25	NLE1 (ENSTTRG00000015519) #26	UNC45B (ENSTTRG00000015528) #27
Sperm whale	MODERN SPECIES	5	PSMD11 (ENSPCTG00005011616) #8	CDK5R1 (ENSPCTG00005011765) #9	MYO1D (ENSPCTG00005011821) #10	TMEM98 (ENSPCTG00005012148) #11	SPACA3 (ENSPCTG00005012213) #12	ASIC2 (ENSPCTG00005012341) #13	CCL2 (ENSPCTG00005012569) ##37	CCL11 (ENSPCTG00005012625) ##37	ENSPCTG00005012666	CCL13 (ENSPCTG00005012690) #17	CCL1 (ENSPCTG00005012728) #18	TMEM132E (ENSPCTG00005012754) #19	ENSPCTG00005012970	ENSPCTG00005013032	ENSPCTG00005013042 #20	LIG3 (ENSPCTG00005013330) #22	RFFL (ENSPCTG00005013449) #23	ENSPCTG00005013530	ENSPCTG00005013587 #24	ENSPCTG00005013754	SLFN12 (ENSPCTG00005013784) ##28	SLFN11 (ENSPCTG00005013804) ##28	SLFN14 (ENSPCTG00005013867) ##28	ENSPCTG00005013925	PEX12 (ENSPCTG00005013981) #29	AP2B1 (ENSPCTG00005014049) #30	RASL10B (ENSPCTG00005014172) #31	GAS2L2 (ENSPCTG00005014226)	ENSPCTG00005014431 #32	C17orf50 (ENSPCTG00005014470) #33	MMP28 (ENSPCTG00005014601) #34
Blue whale	MODERN SPECIES	12	ZNF207 (ENSBMSG00010015813) #7	PSMD11 (ENSBMSG00010015716) #8	CDK5R1 (ENSBMSG00010015699) #9	MYO1D (ENSBMSG00010015533) #10	TMEM98 (ENSBMSG00010015458) #11	SPACA3 (ENSBMSG00010015398) #12	ASIC2 (ENSBMSG00010015290) #13	CCL2 (ENSBMSG00010015239) ##37	CCL7 (ENSBMSG00010015213) ##37	CCL11 (ENSBMSG00010015194) ##37	CCL8 (ENSBMSG00010015171) #16	CCL1 (ENSBMSG00010015132) ##37	TMEM132E (ENSBMSG00010015019) #19	ENSBMSG00010014985	ZNF830 (ENSBMSG00010014976) #21	LIG3 (ENSBMSG00010014942) #22	RFFL (ENSBMSG00010014852) #23	RAD51D (ENSBMSG00010014782) #24	FNDC8 (ENSBMSG00010014750) #25	NLE1 (ENSBMSG00010014584) #26	UNC45B (ENSBMSG00010014269) #27	ENSBMSG00010014205 ##28	ENSBMSG00010014181 ##28	SLFN14 (ENSBMSG00010014153) ##28	PEX12 (ENSBMSG00010014124) #29	ENSBMSG00010014086	AP2B1 (ENSBMSG00010014021) #30	RASL10B (ENSBMSG00010013977) #31	GAS2L2 (ENSBMSG00010013934)	C17orf50 (ENSBMSG00010013900) #33	MMP28 (ENSBMSG00010013863) #34
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156492 #22
Hedgehog	MODERN SPECIES	4333																LIG3 (ENSEEUG00000010486) #22
Common shrew	MODERN SPECIES	2667																LIG3 (ENSSARG00000003306) #22