Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000154268.f #8	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868 #12	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993.c #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293 #30	ENSGT00730000111212 #31	ENSGT00940000161777.b #32	ENSGT00940000155472.a.a #33	ENSGT00510000047764 #34	ENSGT00940000156619 #35	ENSGT00390000015216 #36	ENSGT00940000157480 #37
Ryukyu mouse	MODERN SPECIES	15	Nxph1 (MGP_CAROLIEiJ_G0028101) #7	Ndufa4 (MGP_CAROLIEiJ_G0028102) #8	MGP_CAROLIEiJ_G0028103 #9	MGP_CAROLIEiJ_G0028104 #10	Tmem106b (MGP_CAROLIEiJ_G0028105) #11	Vwde (MGP_CAROLIEiJ_G0028106) #12	MGP_CAROLIEiJ_G0028107 #13	Bmt2 (MGP_CAROLIEiJ_G0028108) #14	Gpr85 (MGP_CAROLIEiJ_G0028109) #15	Smim30 (MGP_CAROLIEiJ_G0028110) #16	Ppp1r3a (MGP_CAROLIEiJ_G0028111) #17	Foxp2 (MGP_CAROLIEiJ_G0028112) #18	MGP_CAROLIEiJ_G0028113 #19	Tfec (MGP_CAROLIEiJ_G0028114) #20	Tes (MGP_CAROLIEiJ_G0028115) #21	Cav2 (MGP_CAROLIEiJ_G0028116) #22	Cav1 (MGP_CAROLIEiJ_G0028117) #23	Met (MGP_CAROLIEiJ_G0028118) #24	Capza2 (MGP_CAROLIEiJ_G0028119) #25	St7 (MGP_CAROLIEiJ_G0028120) #26	Wnt2 (MGP_CAROLIEiJ_G0028121) #27	Asz1 (MGP_CAROLIEiJ_G0028122) #28	Cftr (MGP_CAROLIEiJ_G0028123) #29	Cttnbp2 (MGP_CAROLIEiJ_G0028124) #30	Lsm8 (MGP_CAROLIEiJ_G0028125) #31	Ankrd7 (MGP_CAROLIEiJ_G0028126) #32	Kcnd2 (MGP_CAROLIEiJ_G0028127) #33	Tspan12 (MGP_CAROLIEiJ_G0028128) #34	Ing3 (MGP_CAROLIEiJ_G0028129) #35	Cped1 (MGP_CAROLIEiJ_G0028130) #36	Wnt16 (MGP_CAROLIEiJ_G0028131) #37
Mus_B	ANCESTRAL SPECIES	20	ENSGT00940000154268.f #8	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868 #12	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993.c #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293 #30	ENSGT00730000111212 #31	ENSGT00940000161777.b #32	ENSGT00940000155472.a.a #33	ENSGT00510000047764 #34	ENSGT00940000156619 #35	ENSGT00390000015216 #36	ENSGT00940000157480 #37
Mouse	MODERN SPECIES	15	Nxph1 (ENSMUSG00000046178) #7	Ndufa4 (ENSMUSG00000029632) #8	Phf14 (ENSMUSG00000029629) #9	Thsd7a (ENSMUSG00000032625) #10	Tmem106b (ENSMUSG00000029571) #11	Vwde (ENSMUSG00000079679) #12	Tmem168 (ENSMUSG00000029569) #13	Bmt2 (ENSMUSG00000042742) #14	Gpr85 (ENSMUSG00000048216) #15	Smim30 (ENSMUSG00000052419) #16	Ppp1r3a (ENSMUSG00000042717) #17	Foxp2 (ENSMUSG00000029563) #18	Mdfic (ENSMUSG00000041390) #19	Tfec (ENSMUSG00000029553) #20	Tes (ENSMUSG00000029552) #21	Cav2 (ENSMUSG00000000058) #22	Cav1 (ENSMUSG00000007655) #23	Met (ENSMUSG00000009376) #24	Capza2 (ENSMUSG00000015733) #25	St7 (ENSMUSG00000029534) #26	Wnt2 (ENSMUSG00000010797) #27	Asz1 (ENSMUSG00000010796) #28	Cftr (ENSMUSG00000041301) #29	Cttnbp2 (ENSMUSG00000000416) #30	Lsm8 (ENSMUSG00000044155) #31	Ankrd7 (ENSMUSG00000029517) #32	Kcnd2 (ENSMUSG00000060882) #33	Tspan12 (ENSMUSG00000029669) #34	Ing3 (ENSMUSG00000029670) #35	Cped1 (ENSMUSG00000062980) #36	Wnt16 (ENSMUSG00000029671) #37
Mus_C	ANCESTRAL SPECIES	19	ENSGT00940000154268.f #8	ENSGT00940000156923 #9	ENSGT00940000155427 #10	ENSGT00940000158360 #11	ENSGT00940000163868 #12	ENSGT01100000263477.F	ENSGT00390000005941 #13	ENSGT00390000010382 #14	ENSGT00890000139436.B #15	ENSGT00400000023684 #16	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993.c #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293 #30	ENSGT00730000111212 #31	ENSGT00940000161777.b #32	ENSGT00940000155472.a.a #33	ENSGT00510000047764 #34	ENSGT00940000156619 #35	ENSGT00390000015216 #36	ENSGT00940000157480 #37
Steppe mouse	MODERN SPECIES	3058												ENSMSIG00000019921	ENSMSIG00000019922	Tfec (ENSMSIG00000019924) #20	Tes (ENSMSIG00000019933) #21	Cav2 (ENSMSIG00000019974) #22	Cav1 (ENSMSIG00000019988) #23	Met (ENSMSIG00000020011) #24	Capza2 (ENSMSIG00000020054) #25	ENSMSIG00000020093 #26	ENSMSIG00000020188	ENSMSIG00000020205 #27	Cftr (ENSMSIG00000020275) #29
spretus	MODERN SPECIES	15	Nxph1 (MGP_SPRETEiJ_G0029101) #7	Ndufa4 (MGP_SPRETEiJ_G0029102) #8	MGP_SPRETEiJ_G0029103 #9	Thsd7a (MGP_SPRETEiJ_G0029104) #10	Tmem106b (MGP_SPRETEiJ_G0029105) #11	Vwde (MGP_SPRETEiJ_G0029106) #12	Tmem168 (MGP_SPRETEiJ_G0029107) #13	Bmt2 (MGP_SPRETEiJ_G0029108) #14	Gpr85 (MGP_SPRETEiJ_G0029109) #15	Smim30 (MGP_SPRETEiJ_G0029110) #16	Ppp1r3a (MGP_SPRETEiJ_G0029111) #17	Foxp2 (MGP_SPRETEiJ_G0029112) #18	MGP_SPRETEiJ_G0029113 #19	Tfec (MGP_SPRETEiJ_G0029114) #20	Tes (MGP_SPRETEiJ_G0029115) #21	Cav2 (MGP_SPRETEiJ_G0029116) #22	Cav1 (MGP_SPRETEiJ_G0029117) #23	Met (MGP_SPRETEiJ_G0029118) #24	Capza2 (MGP_SPRETEiJ_G0029119) #25	St7 (MGP_SPRETEiJ_G0029120) #26	Wnt2 (MGP_SPRETEiJ_G0029121) #27	Asz1 (MGP_SPRETEiJ_G0029122) #28	Cftr (MGP_SPRETEiJ_G0029123) #29	Cttnbp2 (MGP_SPRETEiJ_G0029124) #30	Lsm8 (MGP_SPRETEiJ_G0029125) #31	Ankrd7 (MGP_SPRETEiJ_G0029126) #32	Kcnd2 (MGP_SPRETEiJ_G0029127) #33	Tspan12 (MGP_SPRETEiJ_G0029128) #34	Ing3 (MGP_SPRETEiJ_G0029129) #35	Cped1 (MGP_SPRETEiJ_G0029130) #36	Wnt16 (MGP_SPRETEiJ_G0029131) #37