Pecora	ANCESTRAL SPECIES	11	ENSGT00550000075044 #7	ENSGT00940000155659 #8	ENSGT00390000010852 #9	ENSGT00390000013347.a #10	ENSGT00390000010292 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684.a #15	ENSGT00400000023684.b ##15	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293 #30	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.a #35	ENSGT00940000155476 #36	ENSGT00940000161910 #37	ENSGT00940000160766	ENSGT00940000161182	ENSGT01030000234518.E.c.b	ENSGT00940000154738.a
Percora_a	ANCESTRAL SPECIES	11	ENSGT00550000075044 #7	ENSGT00940000155659 #8	ENSGT00390000010852 #9	ENSGT00390000013347.a #10	ENSGT00390000010292 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684.a #15	ENSGT00400000023684.b ##15	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293 #30	ENSGT00940000153143.a.a.f.e.b.a #33	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a #34	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.a #35	ENSGT00940000155476 #36	ENSGT00940000161910 #37	ENSGT00940000160766	ENSGT00940000161182
Bovidae	ANCESTRAL SPECIES	12	ENSGT00940000160513	ENSGT00550000075044 #7	ENSGT00940000155659 #8	ENSGT00390000010852 #9	ENSGT00390000013347.a #10	ENSGT00390000010292 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684.b ##15	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293 #30	ENSGT00940000153143.a.a.f.e.b.a #33	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a #34	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.a #35	ENSGT00940000155476 #36	ENSGT00940000161910 #37	ENSGT00940000160766	ENSGT00940000161182
Caprinae	ANCESTRAL SPECIES	10	ENSGT00940000160513	ENSGT00550000075044 #7	ENSGT00940000155659 #8	ENSGT00390000010852 #9	ENSGT00390000013347.a #10	ENSGT00390000010292 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684.a #15	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b.f #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293 #30	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a #34	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.a #35	ENSGT00940000155476 #36	ENSGT00940000161910 #37	ENSGT00940000160766	ENSGT00940000161182	ENSGT01030000234518.E.c.b
Rambouillet Sheep	MODERN SPECIES	20	IMMP2L (ENSOARG00020002972) #7	DOCK4 (ENSOARG00020002182) #8	ZNF277 (ENSOARG00020002033) #9	IFRD1 (ENSOARG00020001965) #10	LSMEM1 (ENSOARG00020001907) #11	TMEM168 (ENSOARG00020001882) #12	BMT2 (ENSOARG00020001855) #13	GPR85 (ENSOARG00020001848) #14	SMIM30 (ENSOARG00020001844) #15	ENSOARG00020001818 #16	PPP1R3A (ENSOARG00020001807) #17	FOXP2 (ENSOARG00020001223) #18	MDFIC (ENSOARG00020001137) #19	TFEC (ENSOARG00020001041) #20	TES (ENSOARG00020000994) #21	CAV2 (ENSOARG00020000978) #22	CAV1 (ENSOARG00020000956) #23	MET (ENSOARG00020000868) #24	ENSOARG00020000812 #25	ST7 (ENSOARG00020000287) #26	WNT2 (ENSOARG00020000160) #27	ASZ1 (ENSOARG00020000134) #28	CFTR (ENSOARG00020016363) #29	CTTNBP2 (ENSOARG00020016233) #30	ENSOARG00020016185 #31	ENSOARG00020016145 #32	ENSOARG00020016114 #33	ENSOARG00020016083 #34	ENSOARG00020016021 #35	STARD3NL (ENSOARG00020015943) #36	EPDR1 (ENSOARG00020015795) #37
Goat	MODERN SPECIES	23	ENSCHIG00000009535	DOCK4 (ENSCHIG00000020044) #8	ZNF277 (ENSCHIG00000009269) #9	IFRD1 (ENSCHIG00000017336) #10	LSMEM1 (ENSCHIG00000025752) #11	TMEM168 (ENSCHIG00000016804) #12	BMT2 (ENSCHIG00000025584) #13	GPR85 (ENSCHIG00000007525) #14	ENSCHIG00000022950	PPP1R3A (ENSCHIG00000008771) #17	ENSCHIG00000008927 #18	FOXP2 (ENSCHIG00000023721) #18	MDFIC (ENSCHIG00000011870) #19	TFEC (ENSCHIG00000019490) #20	TES (ENSCHIG00000026164) #21	CAV2 (ENSCHIG00000013089) #22	CAV1 (ENSCHIG00000019290) #23	MET (ENSCHIG00000024998) #24	CAPZA2 (ENSCHIG00000013697) #25	ST7 (ENSCHIG00000020176) #26	WNT2 (ENSCHIG00000011054) #27	ASZ1 (ENSCHIG00000019569) #28	CFTR (ENSCHIG00000017768) #29	CTTNBP2 (ENSCHIG00000014972) #30	ENSCHIG00000012425 #34	ENSCHIG00000019241 #34	ENSCHIG00000026070 #35	STARD3NL (ENSCHIG00000018771) #36	ENSCHIG00000011047	EPDR1 (ENSCHIG00000019001) #37	SFRP4 (ENSCHIG00000008577)
Bovinae	ANCESTRAL SPECIES	8	ENSGT00940000160513	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b	ENSGT00940000155659 #8	ENSGT00390000010852 #9	ENSGT00390000013347.a #10	ENSGT00390000010292 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684.b ##15	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293 #30	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a #34	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.a #35	ENSGT00940000155476.q #36	ENSGT00940000161910 #37	ENSGT00940000160766	ENSGT00940000161182	ENSGT01030000234518.E.c.b
Bos	ANCESTRAL SPECIES	8	ENSGT00940000160513	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b	ENSGT00940000155659 #8	ENSGT00390000010852 #9	ENSGT00390000013347.a #10	ENSGT00390000010292 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684.b ##15	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293.g #30	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a.b #34	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a.a.b #34	ENSGT00940000153143.a.a.f.e.b.a #33	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a.a.a #34	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.a #35	ENSGT00940000155476.q #36	ENSGT00940000161910 #37
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000160513	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b.a	ENSGT00940000155659 #8	ENSGT00390000010852 #9	ENSGT00390000013347.a #10	ENSGT00390000010292 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00890000139436.B #14	ENSGT00400000023684.b ##15	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293.g #30	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a.b #34	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a.a.b #34	ENSGT00940000153143.a.a.f.e.b.a #33	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a.a.a #34	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.a #35	ENSGT00940000155476.q #36	ENSGT00940000161910 #37
Hybrid Bos Indicus	MODERN SPECIES	23	ZNF277 (ENSBIXG00005010603) #9	ENSBIXG00005010570	IFRD1 (ENSBIXG00005000897) #10	LSMEM1 (ENSBIXG00005000893) #11	ENSBIXG00005000889	TMEM168 (ENSBIXG00005005951) #12	BMT2 (ENSBIXG00005010418) #13	GPR85 (ENSBIXG00005000762) #14	SMIM30 (ENSBIXG00005010364) ##15	PPP1R3A (ENSBIXG00005010352) #17	FOXP2 (ENSBIXG00005010281) #18	MDFIC (ENSBIXG00005006771) #19	TFEC (ENSBIXG00005010074) #20	TES (ENSBIXG00005010013) #21	ENSBIXG00005000753	CAV2 (ENSBIXG00005009987) #22	CAV1 (ENSBIXG00005009977) #23	MET (ENSBIXG00005009936) #24	CAPZA2 (ENSBIXG00005009887) #25	ST7 (ENSBIXG00005009830) #26	WNT2 (ENSBIXG00005009672) #27	ASZ1 (ENSBIXG00005009631) #28	CFTR (ENSBIXG00005009586) #29	CTTNBP2 (ENSBIXG00005009484) #30	ENSBIXG00005009413 #34	ENSBIXG00005009400	ENSBIXG00005009393 #33	ENSBIXG00005000491 #34	ENSBIXG00005009371	ENSBIXG00005029235 #35	ENSBIXG00005001596 #36
Cow	MODERN SPECIES	23	IMMP2L (ENSBTAG00000004398) #7	DOCK4 (ENSBTAG00000021182) #8	ZNF277 (ENSBTAG00000013050) #9	IFRD1 (ENSBTAG00000010549) #10	LSMEM1 (ENSBTAG00000010555) #11	TMEM168 (ENSBTAG00000021967) #12	BMT2 (ENSBTAG00000007608) #13	GPR85 (ENSBTAG00000032844) #14	PPP1R3A (ENSBTAG00000006733) #17	UBE2I (ENSBTAG00000054178)	FOXP2 (ENSBTAG00000011246)	MDFIC (ENSBTAG00000021543) #19	TFEC (ENSBTAG00000014228) #20	ENSBTAG00000055251	TES (ENSBTAG00000021204) #21	CAV2 (ENSBTAG00000049397) #22	CAV1 (ENSBTAG00000017869) #23	MET (ENSBTAG00000006161) #24	CAPZA2 (ENSBTAG00000004072) #25	ST7 (ENSBTAG00000010756) #26	WNT2 (ENSBTAG00000008097) #27	ASZ1 (ENSBTAG00000000169) #28	CFTR (ENSBTAG00000006589) #29	CTTNBP2 (ENSBTAG00000021469) #30	TARP (ENSBTAG00000036154) #34	ENSBTAG00000053502	ENSBTAG00000035945 #35	STARD3NL (ENSBTAG00000038795) #36	EPDR1 (ENSBTAG00000033197) #37	ENSBTAG00000052470	SFRP4 (ENSBTAG00000015366)
Bos_a	ANCESTRAL SPECIES	12	ENSGT00550000075044 #7	ENSGT00940000160513	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b	ENSGT00940000155659 #8	ENSGT00390000010852 #9	ENSGT00390000013347.a #10	ENSGT00390000010292 #11	ENSGT00390000005941 #12	ENSGT00390000010382 #13	ENSGT00400000023684.b ##15	ENSGT00940000157682.B #17	ENSGT00940000155480 #18	ENSGT00940000158685 #19	ENSGT00940000159404 #20	ENSGT00940000155993 #21	ENSGT00950000183006.A.b #22	ENSGT00950000183006.B.f.b.a #23	ENSGT00940000158022 #24	ENSGT00950000183119.a.e.b #25	ENSGT00390000000873.a.b #26	ENSGT00940000159231 #27	ENSGT00880000138051.a #28	ENSGT00940000158567 #29	ENSGT00940000158293.g #30	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.a.b #34	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.a #35	ENSGT00940000155476.q #36	ENSGT00940000161910 #37	ENSGT00940000160766	ENSGT00940000161182	ENSGT01030000234518.E.c.b
Domestic yak	MODERN SPECIES	23	ZNF277 (ENSBGRG00000001704) #9	IFRD1 (ENSBGRG00000001761) #10	LSMEM1 (ENSBGRG00000001792) #11	ENSBGRG00000001803	ENSBGRG00000001808	TMEM168 (ENSBGRG00000001815) #12	BMT2 (ENSBGRG00000001829) #13	SMIM30 (ENSBGRG00000001848) ##15	ENSBGRG00000001853	PPP1R3A (ENSBGRG00000001862) #17	FOXP2 (ENSBGRG00000001901) #18	ENSBGRG00000001995	MDFIC (ENSBGRG00000002028) #19	TFEC (ENSBGRG00000002059) #20	TES (ENSBGRG00000002095) #21	CAV2 (ENSBGRG00000002106) #22	CAV1 (ENSBGRG00000002134) #23	MET (ENSBGRG00000002220) #24	CAPZA2 (ENSBGRG00000002497) #25	ST7 (ENSBGRG00000002726) #26	WNT2 (ENSBGRG00000003541) #27	ASZ1 (ENSBGRG00000003561) #28	CFTR (ENSBGRG00000003733) #29	ENSBGRG00000004699	CTTNBP2 (ENSBGRG00000004719) #30	ENSBGRG00000004815 #34	ENSBGRG00000004851 #35	ENSBGRG00000004925 #36	EPDR1 (ENSBGRG00000004974) #37	SFRP4 (ENSBGRG00000005021)	NME8 (ENSBGRG00000005050)
Wild yak	MODERN SPECIES	1064															TES (ENSBMUG00000013824) #21	CAV2 (ENSBMUG00000013835) #22	CAV1 (ENSBMUG00000013848) #23	MET (ENSBMUG00000013884) #24	CAPZA2 (ENSBMUG00000013919) #25	ST7 (ENSBMUG00000014041) #26	WNT2 (ENSBMUG00000014168) #27	ASZ1 (ENSBMUG00000014197) #28	CFTR (ENSBMUG00000014258) #29
American bison	MODERN SPECIES	3370	LRRN3 (ENSBBBG00000000155)	ENSBBBG00000000156	DOCK4 (ENSBBBG00000001419) #8	ZNF277 (ENSBBBG00000009202) #9	IFRD1 (ENSBBBG00000009201) #10	LSMEM1 (ENSBBBG00000001418) #11	TMEM168 (ENSBBBG00000009037) #12	BMT2 (ENSBBBG00000009200) #13	GPR85 (ENSBBBG00000009199) #14	SMIM30 (ENSBBBG00000009198) ##15	PPP1R3A (ENSBBBG00000009196) #17	FOXP2 (ENSBBBG00000009195) #18	MDFIC (ENSBBBG00000025491) #19	TFEC (ENSBBBG00000006745) #20	TES (ENSBBBG00000025359) #21	CAV2 (ENSBBBG00000025261) #22	CAV1 (ENSBBBG00000007769) #23	ENSBBBG00000006678	ENSBBBG00000006674 #24	CAPZA2 (ENSBBBG00000025209) #25	ST7 (ENSBBBG00000025162) #26	WNT2 (ENSBBBG00000024800) #27	ASZ1 (ENSBBBG00000024781) #28	CFTR (ENSBBBG00000024730) #29	CTTNBP2 (ENSBBBG00000008038) #30	ENSBBBG00000024408 #34
Siberian musk deer	MODERN SPECIES	88	LRRN3 (ENSMMSG00000005217)	DOCK4 (ENSMMSG00000005495) #8	ZNF277 (ENSMMSG00000006715) #9	IFRD1 (ENSMMSG00000006786) #10	LSMEM1 (ENSMMSG00000006885) #11	TMEM168 (ENSMMSG00000006914) #12	BMT2 (ENSMMSG00000006965) #13	GPR85 (ENSMMSG00000006987) #14	ENSMMSG00000007005 #15	ENSMMSG00000007022	PPP1R3A (ENSMMSG00000007054) #17	FOXP2 (ENSMMSG00000007195) #18	MDFIC (ENSMMSG00000009816) #19	TFEC (ENSMMSG00000009921) #20	TES (ENSMMSG00000010139) #21	CAV2 (ENSMMSG00000010190) #22	CAV1 (ENSMMSG00000010219) #23	MET (ENSMMSG00000010268) #24	ENSMMSG00000010444	CAPZA2 (ENSMMSG00000010466) #25	ST7 (ENSMMSG00000010605) #26	WNT2 (ENSMMSG00000010995) #27	ASZ1 (ENSMMSG00000011026) #28	CFTR (ENSMMSG00000011163) #29	CTTNBP2 (ENSMMSG00000012357) #30	ENSMMSG00000012423 #33	ENSMMSG00000012448 #34	ENSMMSG00000012465 #35	STARD3NL (ENSMMSG00000012493) #36	EPDR1 (ENSMMSG00000012520) #37	SFRP4 (ENSMMSG00000012546)
Yarkand deer	MODERN SPECIES	9	DOCK4 (ENSCHYG00000010847) #8	ZNF277 (ENSCHYG00000010486) #9	IFRD1 (ENSCHYG00000010329) #10	LSMEM1 (ENSCHYG00000010293) #11	ENSCHYG00000010263	TMEM168 (ENSCHYG00000010204) #12	BMT2 (ENSCHYG00000010166) #13	GPR85 (ENSCHYG00000010143) #14	SMIM30 (ENSCHYG00000010105) #15	PPP1R3A (ENSCHYG00000010061) #17	ENSCHYG00000010022	FOXP2 (ENSCHYG00000009585) #18	MDFIC (ENSCHYG00000009513) #19	TFEC (ENSCHYG00000009370) #20	TES (ENSCHYG00000009300) #21	CAV2 (ENSCHYG00000009254) #22	CAV1 (ENSCHYG00000009187) #23	MET (ENSCHYG00000008936) #24	ENSCHYG00000008862	CAPZA2 (ENSCHYG00000008671) #25	ST7 (ENSCHYG00000006854) #26	WNT2 (ENSCHYG00000006691) #27	ASZ1 (ENSCHYG00000006576) #28	CFTR (ENSCHYG00000006329) #29	CTTNBP2 (ENSCHYG00000006159) #30	STARD3NL (ENSCHYG00000006133) #36	EPDR1 (ENSCHYG00000006107) #37	SFRP4 (ENSCHYG00000006040)	NME8 (ENSCHYG00000005941)	ENSCHYG00000005916	PNPLA8 (ENSCHYG00000005855)