Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b #16	ENSGT01100000263484.C.b.a #17	ENSGT00940000157005 #18	ENSGT00390000016029 #19	ENSGT00940000155015 #20	ENSGT00950000183196.B #21	ENSGT00940000155708 #22	ENSGT00390000003738.a.b #23	ENSGT00940000154509 #24	ENSGT00940000155893.b #25	ENSGT00890000139496 #26	ENSGT00940000158435 #27	ENSGT00940000153497.E #28	ENSGT00940000154964 #29	ENSGT00390000015520 #30	ENSGT00390000002757.u #31	ENSGT00940000160075 #32	ENSGT00940000161601 #33	ENSGT00940000156456 #34	ENSGT00940000161266 #35	ENSGT00940000162209 #36	ENSGT00390000012265 #37
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b #16	ENSGT01100000263484.C.b.a #17	ENSGT00940000157005 #18	ENSGT00390000016029 #19	ENSGT00940000155015 #20	ENSGT00950000183196.B #21	ENSGT00940000155708 #22	ENSGT00390000003738.a.b #23	ENSGT00940000154509 #24	ENSGT00940000155893.b #25	ENSGT00890000139496 #26	ENSGT00940000158435 #27	ENSGT00940000153497.E #28	ENSGT00940000154964 #29	ENSGT00390000015520 #30	ENSGT00390000002757.u #31	ENSGT00940000160075 #32	ENSGT00940000161601 #33	ENSGT00940000156456 #34	ENSGT00940000161266 #35	ENSGT00940000162209 #36	ENSGT00390000012265 #37
Guinea pig	MODERN SPECIES	100										TNFSF10 (ENSCPOG00000031635) #16	GHSR (ENSCPOG00000014041) #17	FNDC3B (ENSCPOG00000011705) #18	TMEM212 (ENSCPOG00000000573) #19	PLD1 (ENSCPOG00000010721) #20	TNIK (ENSCPOG00000012060) #21	SLC2A2 (ENSCPOG00000012055) #22	EIF5A2 (ENSCPOG00000012594) #23	ENSCPOG00000009215 #24	SLC7A14 (ENSCPOG00000011615) #25	CLDN11 (ENSCPOG00000033278) #26	SKIL (ENSCPOG00000006684) #27	PRKCI (ENSCPOG00000015212) #28	PHC3 (ENSCPOG00000005870) #29	GPR160 (ENSCPOG00000007388) #30	SEC62 (ENSCPOG00000040337) #31	SAMD7 (ENSCPOG00000025571) #32	LRRIQ4 (ENSCPOG00000011649) #33	LRRC34 (ENSCPOG00000011644) #34	MYNN (ENSCPOG00000011640) #35	ACTRT3 (ENSCPOG00000011636) #36	ENSCPOG00000012256 #37
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00940000155531.b	ENSGT00730000111202	ENSGT00950000183039.B.b.a	ENSGT00940000153421.a.b	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332	ENSGT00940000156299	ENSGT00940000156699	ENSGT01070000253816.b #16	ENSGT01100000263484.C.b.a #17	ENSGT00940000157005 #18	ENSGT00390000016029 #19	ENSGT00940000155015 #20	ENSGT00950000183196.B #21	ENSGT00940000155708 #22	ENSGT00390000003738.a.b.n.a #23	ENSGT00940000154509 #24	ENSGT00940000155893.b #25	ENSGT00890000139496 #26	ENSGT00940000158435 #27	ENSGT00940000153497.E #28	ENSGT00940000154964 #29	ENSGT00390000015520 #30	ENSGT00390000002757.u #31	ENSGT00940000160075 #32	ENSGT00940000161601 #33	ENSGT00940000156456 #34	ENSGT00940000161266 #35	ENSGT00940000162209 #36	ENSGT00390000012265 #37
Long-tailed chinchilla	MODERN SPECIES	127	TBL1XR1 (ENSCLAG00000013893)	ENSCLAG00000018045	NAALADL2 (ENSCLAG00000012428)	NLGN1 (ENSCLAG00000010604)	SPATA16 (ENSCLAG00000016484)	ECT2 (ENSCLAG00000015030)	ENSCLAG00000013454	NCEH1 (ENSCLAG00000011865)	ENSCLAG00000017893	TNFSF10 (ENSCLAG00000015552) #16	GHSR (ENSCLAG00000012973) #17	FNDC3B (ENSCLAG00000015717) #18	TMEM212 (ENSCLAG00000016037) #19	PLD1 (ENSCLAG00000012419) #20	TNIK (ENSCLAG00000011229) #21	SLC2A2 (ENSCLAG00000014131) #22	ENSCLAG00000013461 #23	RPL22L1 (ENSCLAG00000012186) #24	SLC7A14 (ENSCLAG00000010996) #25	CLDN11 (ENSCLAG00000009889) #26	SKIL (ENSCLAG00000011070) #27	PRKCI (ENSCLAG00000014828) #28	PHC3 (ENSCLAG00000012350) #29	GPR160 (ENSCLAG00000011119) #30	ENSCLAG00000010122 #31	SAMD7 (ENSCLAG00000011650) #32	LRRIQ4 (ENSCLAG00000014708) #33	LRRC34 (ENSCLAG00000014039) #34	MYNN (ENSCLAG00000015808) #35	ACTRT3 (ENSCLAG00000013559) #36
Degu	MODERN SPECIES	96		ENSODEG00000008026	ENSODEG00000006853	NLGN1 (ENSODEG00000006900)	SPATA16 (ENSODEG00000007354)	ENSODEG00000019421	ENSODEG00000007260	NCEH1 (ENSODEG00000006949)	TNFSF10 (ENSODEG00000007502) #16	GHSR (ENSODEG00000007538) #17	ENSODEG00000007581 #18	TMEM212 (ENSODEG00000010772) #19	ENSODEG00000019876	PLD1 (ENSODEG00000006929) #20	TNIK (ENSODEG00000007936) #21	SLC2A2 (ENSODEG00000008360) #22	ENSODEG00000019567	ENSODEG00000007731 #23	ENSODEG00000008003 #24	ENSODEG00000009861	SLC7A14 (ENSODEG00000008674) #25	CLDN11 (ENSODEG00000008979) #26	SKIL (ENSODEG00000007781) #27	ENSODEG00000019467	PRKCI (ENSODEG00000007927) #28	PHC3 (ENSODEG00000007882) #29	ENSODEG00000010940 #31	ENSODEG00000008380 #32	ENSODEG00000009560	LRRIQ4 (ENSODEG00000008080) #33	LRRC34 (ENSODEG00000009647) #34
Naked mole-rat female	MODERN SPECIES	27	NAALADL2 (ENSHGLG00000013839)	ENSHGLG00000042892	NLGN1 (ENSHGLG00000013440)	ENSHGLG00000048748	SPATA16 (ENSHGLG00000011913)	ENSHGLG00000003841	ENSHGLG00000011562	ECT2 (ENSHGLG00000011074)	NCEH1 (ENSHGLG00000010683)	TNFSF10 (ENSHGLG00000044629) #16	GHSR (ENSHGLG00000014950) #17	FNDC3B (ENSHGLG00000014877) #18	TMEM212 (ENSHGLG00000014698) #19	PLD1 (ENSHGLG00000014314) #20	TNIK (ENSHGLG00000013310) #21	SLC2A2 (ENSHGLG00000049404) #22	ENSHGLG00000012647 #23	RPL22L1 (ENSHGLG00000045881) #24	ENSHGLG00000046725	SLC7A14 (ENSHGLG00000012232) #25	ENSHGLG00000049917	ENSHGLG00000037289	CLDN11 (ENSHGLG00000043741) #26	ENSHGLG00000032237	SKIL (ENSHGLG00000011598) #27	PRKCI (ENSHGLG00000011160) #28	PHC3 (ENSHGLG00000014756) #29	ENSHGLG00000038474	GPR160 (ENSHGLG00000040630) #30	ENSHGLG00000047648	ENSHGLG00000014414 #31