Murinae	ANCESTRAL SPECIES	5	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b #9	ENSGT01030000234598.a.b #10	ENSGT00940000155789 #12	ENSGT00390000015332 #13	ENSGT00940000156299 #14	ENSGT00940000156699 #15	ENSGT01070000253816.b #16	ENSGT01100000263484.C.b.a #17	ENSGT00940000157005 #18	ENSGT00390000016029 #19	ENSGT00940000155015 #20	ENSGT00950000183196.B #21	ENSGT00940000182224	ENSGT00940000155708 #22	ENSGT00390000003738.a.b #23	ENSGT00940000154509.xc.a #24	ENSGT00940000155893.b #25	ENSGT00890000139496 #26	ENSGT00940000158435 #27	ENSGT00940000153497.E #28	ENSGT00940000154964 #29	ENSGT00390000015520 #30	ENSGT00390000002757 #31	ENSGT00940000160075 #32	ENSGT00730000111293 #33	ENSGT00940000161601 #34	ENSGT00940000156456 #35	ENSGT00940000161266 #36	ENSGT00940000162209 #37
Rat	MODERN SPECIES	11	ENSRNOG00000070560 #7	LOC120100784 (ENSRNOG00000031378) #8	Tbl1xr1 (ENSRNOG00000011216) #9	Naaladl2 (ENSRNOG00000065021) #10	ENSRNOG00000033028 #11	Nlgn1 (ENSRNOG00000032576) #12	Spata16 (ENSRNOG00000024521) #13	Ect2 (ENSRNOG00000024365) #14	Nceh1 (ENSRNOG00000013313) #15	Tnfsf10 (ENSRNOG00000067968) #16	Ghsr (ENSRNOG00000024119) #17	Fndc3b (ENSRNOG00000024089) #18	Tmem212 (ENSRNOG00000012608) #19	Pld1 (ENSRNOG00000028156) #20	Tnik (ENSRNOG00000012422) #21	Slc2a2 (ENSRNOG00000011875) #22	Eif5a2 (ENSRNOG00000011859) #23	Rpl22l1 (ENSRNOG00000011817) #24	Slc7a14 (ENSRNOG00000028097) #25	Cldn11 (ENSRNOG00000010263) #26	Skil (ENSRNOG00000009899) #27	Prkci (ENSRNOG00000009652) #28	Phc3 (ENSRNOG00000009491) #29	Gpr160 (ENSRNOG00000009487) #30	Sec62 (ENSRNOG00000009057) #31	Samd7 (ENSRNOG00000027995) #32	Lrrc31 (ENSRNOG00000027971) #33	Lrriq4 (ENSRNOG00000009004) #34	Lrrc34 (ENSRNOG00000027935) #35	Mynn (ENSRNOG00000027923) #36	Actrt3 (ENSRNOG00000027908) #37
Mus	ANCESTRAL SPECIES	7	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b #9	ENSGT01030000234598.a.b #10	ENSGT00940000155789 #12	ENSGT00390000015332 #13	ENSGT00940000156299 #14	ENSGT00940000156699 #15	ENSGT01070000253816.b #16	ENSGT01100000263484.C.b.a #17	ENSGT00940000157005 #18	ENSGT00390000016029 #19	ENSGT00940000155015 #20	ENSGT00950000183196.B #21	ENSGT00940000182224	ENSGT00940000155708 #22	ENSGT00390000003738.a.b #23	ENSGT00940000154509.xc.a #24	ENSGT00940000164694	ENSGT00940000157208	ENSGT00390000012265	ENSGT00940000162209 #37	ENSGT00940000161266 #36	ENSGT00940000156456 #35	ENSGT00940000161601 #34	ENSGT00730000111293 #33	ENSGT00940000160075 #32	ENSGT00390000002757 #31	ENSGT00390000015520 #30	ENSGT00940000154964 #29	ENSGT00940000153497.E #28
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b #9	ENSGT01030000234598.a.b #10	ENSGT00940000155789 #12	ENSGT00390000015332 #13	ENSGT00940000156299 #14	ENSGT00940000156699 #15	ENSGT01070000253816.b #16	ENSGT01100000263484.C.b.a #17	ENSGT00940000157005 #18	ENSGT00390000016029 #19	ENSGT00940000155015.b #20	ENSGT00950000183196.B #21	ENSGT00940000182224	ENSGT00940000155708 #22	ENSGT00390000003738.a.b #23	ENSGT00940000154509.xc.a #24	ENSGT00940000164694	ENSGT00940000157208	ENSGT00390000012265	ENSGT00940000162209 #37	ENSGT00940000161266 #36	ENSGT00940000156456 #35	ENSGT00940000161601 #34	ENSGT00730000111293 #33	ENSGT00940000160075 #32	ENSGT00390000002757 #31	ENSGT00390000015520 #30	ENSGT00940000154964 #29	ENSGT00940000153497.E #28
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b #9	ENSGT01030000234598.a.b #10	ENSGT00940000155789 #12	ENSGT00390000015332 #13	ENSGT00940000156299 #14	ENSGT00940000156699 #15	ENSGT01070000253816.b #16	ENSGT01100000263484.C.b.a #17	ENSGT00940000157005 #18	ENSGT00390000016029 #19	ENSGT00940000155015.b #20	ENSGT00950000183196.B #21	ENSGT00940000182224	ENSGT00940000155708 #22	ENSGT00390000003738.a.b #23	ENSGT00940000154509.xc.a #24	ENSGT00940000164694	ENSGT00940000157208	ENSGT00390000012265	ENSGT00940000162209 #37	ENSGT00940000161266 #36	ENSGT00940000156456 #35	ENSGT00940000161601 #34	ENSGT00730000111293 #33	ENSGT00940000160075 #32	ENSGT00390000002757 #31	ENSGT00390000015520 #30	ENSGT00940000154964 #29	ENSGT00940000153497.E #28
Mouse	MODERN SPECIES	12	Cpa3 (ENSMUSG00000001865)	Cpb1 (ENSMUSG00000011463)	Agtr1b (ENSMUSG00000054988)	Tbl1xr1 (ENSMUSG00000027630) #9	Naaladl2 (ENSMUSG00000102758) #10	Nlgn1 (ENSMUSG00000063887) #12	Spata16 (ENSMUSG00000039335) #13	Ect2 (ENSMUSG00000027699) #14	Nceh1 (ENSMUSG00000027698) #15	Tnfsf10 (ENSMUSG00000039304) #16	Ghsr (ENSMUSG00000051136) #17	Fndc3b (ENSMUSG00000039286) #18	Tmem212 (ENSMUSG00000043164) #19	Pld1 (ENSMUSG00000027695) #20	Tnik (ENSMUSG00000027692) #21	Slc2a2 (ENSMUSG00000027690) #22	Eif5a2 (ENSMUSG00000050192) #23	Rpl22l1 (ENSMUSG00000039221) #24	Gm1527 (ENSMUSG00000074655)	Egfem1 (ENSMUSG00000063600)	Mecom (ENSMUSG00000027684)	Actrt3 (ENSMUSG00000037737) #37	Mynn (ENSMUSG00000037730) #36	Lrrc34 (ENSMUSG00000027702) #35	Lrriq4 (ENSMUSG00000027703) #34	Lrrc31 (ENSMUSG00000074653) #33	Samd7 (ENSMUSG00000051860) #32	Sec62 (ENSMUSG00000027706) #31	Gpr160 (ENSMUSG00000037661) #30	Phc3 (ENSMUSG00000037652) #29	Prkci (ENSMUSG00000037643) #28
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000157819	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000153421.a.b #9	ENSGT01030000234598.a.b #10	ENSGT00940000155789 #12	ENSGT00390000015332 #13	ENSGT00940000156299 #14	ENSGT00940000156699 #15	ENSGT01070000253816.b #16	ENSGT01100000263484.C.b.a #17	ENSGT00940000157005 #18	ENSGT00390000016029 #19	ENSGT00940000155015.b #20	ENSGT00950000183196.B #21	ENSGT00940000182224	ENSGT00940000155708 #22	ENSGT00390000003738.a.b #23	ENSGT00940000154509.xc.a #24	ENSGT00940000164694	ENSGT00940000157208	ENSGT00390000012265	ENSGT00940000162209 #37	ENSGT00940000161266 #36	ENSGT00940000156456 #35	ENSGT00940000161601 #34	ENSGT00730000111293 #33	ENSGT00940000160075 #32	ENSGT00390000002757 #31	ENSGT00390000015520 #30	ENSGT00940000154964 #29	ENSGT00940000153497.E #28
spretus	MODERN SPECIES	12	Agtr1b (MGP_SPRETEiJ_G0025813)	Tbl1xr1 (MGP_SPRETEiJ_G0025814) #9	MGP_SPRETEiJ_G0025815 #10	MGP_SPRETEiJ_G0025816 #10	Nlgn1 (MGP_SPRETEiJ_G0025817) #12	Spata16 (MGP_SPRETEiJ_G0025818) #13	Ect2 (MGP_SPRETEiJ_G0025819) #14	Nceh1 (MGP_SPRETEiJ_G0025820) #15	Tnfsf10 (MGP_SPRETEiJ_G0025821) #16	Ghsr (MGP_SPRETEiJ_G0025822) #17	Fndc3b (MGP_SPRETEiJ_G0025823) #18	Tmem212 (MGP_SPRETEiJ_G0025824) #19	Pld1 (MGP_SPRETEiJ_G0025825) #20	MGP_SPRETEiJ_G0025826 #20	Tnik (MGP_SPRETEiJ_G0025827) #21	Slc2a2 (MGP_SPRETEiJ_G0025828) #22	Eif5a2 (MGP_SPRETEiJ_G0025830) #23	Rpl22l1 (MGP_SPRETEiJ_G0025831) #24	Egfem1 (MGP_SPRETEiJ_G0025832)	Mecom (MGP_SPRETEiJ_G0025833)	Actrt3 (MGP_SPRETEiJ_G0025834) #37	Mynn (MGP_SPRETEiJ_G0025835) #36	Lrrc34 (MGP_SPRETEiJ_G0025836) #35	Lrriq4 (MGP_SPRETEiJ_G0025837) #34	MGP_SPRETEiJ_G0025838	Samd7 (MGP_SPRETEiJ_G0025839) #32	Sec62 (MGP_SPRETEiJ_G0025840) #31	Gpr160 (MGP_SPRETEiJ_G0025841) #30	Phc3 (MGP_SPRETEiJ_G0025842) #29	Prkci (MGP_SPRETEiJ_G0025843) #28	Skil (MGP_SPRETEiJ_G0025844) #27
Steppe mouse	MODERN SPECIES	3119					Spata16 (ENSMSIG00000021824) #13	ENSMSIG00000021907	Ect2 (ENSMSIG00000021918) #14	Nceh1 (ENSMSIG00000022034) #15	Tnfsf10 (ENSMSIG00000022048) #16	Ghsr (ENSMSIG00000022097) #17	Fndc3b (ENSMSIG00000022129) #18	Tmem212 (ENSMSIG00000022484) #19	Pld1 (ENSMSIG00000022498) #20	Tnik (ENSMSIG00000022583) #21	ENSMSIG00000022848	Slc2a2 (ENSMSIG00000022854) #22	Eif5a2 (ENSMSIG00000022876) #23	ENSMSIG00000022887 #24
Ryukyu mouse	MODERN SPECIES	12	Cpa3 (MGP_CAROLIEiJ_G0024880)	Cpb1 (MGP_CAROLIEiJ_G0024881)	Agtr1b (MGP_CAROLIEiJ_G0024882)	Tbl1xr1 (MGP_CAROLIEiJ_G0024883) #9	Naaladl2 (MGP_CAROLIEiJ_G0024884) #10	Nlgn1 (MGP_CAROLIEiJ_G0024885) #12	Spata16 (MGP_CAROLIEiJ_G0024886) #13	MGP_CAROLIEiJ_G0024887 #14	Nceh1 (MGP_CAROLIEiJ_G0024888) #15	Tnfsf10 (MGP_CAROLIEiJ_G0024889) #16	Ghsr (MGP_CAROLIEiJ_G0024890) #17	Fndc3b (MGP_CAROLIEiJ_G0024891) #18	Tmem212 (MGP_CAROLIEiJ_G0024892) #19	Pld1 (MGP_CAROLIEiJ_G0024893) #20	Tnik (MGP_CAROLIEiJ_G0024894) #21	Slc2a2 (MGP_CAROLIEiJ_G0024895) #22	Eif5a2 (MGP_CAROLIEiJ_G0024896) #23	Rpl22l1 (MGP_CAROLIEiJ_G0024897) #24	Egfem1 (MGP_CAROLIEiJ_G0024898)	Mecom (MGP_CAROLIEiJ_G0024899)	Actrt3 (MGP_CAROLIEiJ_G0024900) #37	Mynn (MGP_CAROLIEiJ_G0024901) #36	Lrrc34 (MGP_CAROLIEiJ_G0024902) #35	Lrriq4 (MGP_CAROLIEiJ_G0024903) #34	Lrrc31 (MGP_CAROLIEiJ_G0024904) #33	MGP_CAROLIEiJ_G0024905 #32	Sec62 (MGP_CAROLIEiJ_G0024906) #31	Gpr160 (MGP_CAROLIEiJ_G0024907) #30	Phc3 (MGP_CAROLIEiJ_G0024908) #29	Prkci (MGP_CAROLIEiJ_G0024909) #28	Skil (MGP_CAROLIEiJ_G0024910) #27
Shrew mouse	MODERN SPECIES	17	Cpa3 (MGP_PahariEiJ_G0026325)	Cpb1 (MGP_PahariEiJ_G0026326)	Agtr1b (MGP_PahariEiJ_G0026327)	Tbl1xr1 (MGP_PahariEiJ_G0026328) #9	Naaladl2 (MGP_PahariEiJ_G0026329) #10	Nlgn1 (MGP_PahariEiJ_G0026330) #12	Spata16 (MGP_PahariEiJ_G0026331) #13	Ect2 (MGP_PahariEiJ_G0026332) #14	Nceh1 (MGP_PahariEiJ_G0026333) #15	Tnfsf10 (MGP_PahariEiJ_G0026334) #16	Ghsr (MGP_PahariEiJ_G0026335) #17	Fndc3b (MGP_PahariEiJ_G0026336) #18	Tmem212 (MGP_PahariEiJ_G0026337) #19	Pld1 (MGP_PahariEiJ_G0026338) #20	Tnik (MGP_PahariEiJ_G0026339) #21	MGP_PahariEiJ_G0026340 #22	Eif5a2 (MGP_PahariEiJ_G0026341) #23	Rpl22l1 (MGP_PahariEiJ_G0026342) #24	Egfem1 (MGP_PahariEiJ_G0026343)	Mecom (MGP_PahariEiJ_G0026344)	Actrt3 (MGP_PahariEiJ_G0026345) #37	Mynn (MGP_PahariEiJ_G0026346) #36	Lrrc34 (MGP_PahariEiJ_G0026347) #35	Lrriq4 (MGP_PahariEiJ_G0026348) #34	MGP_PahariEiJ_G0026349 #33	Samd7 (MGP_PahariEiJ_G0026350) #32	Sec62 (MGP_PahariEiJ_G0026351) #31	Gpr160 (MGP_PahariEiJ_G0026352) #30	Phc3 (MGP_PahariEiJ_G0026353) #29	Prkci (MGP_PahariEiJ_G0026354) #28	Skil (MGP_PahariEiJ_G0026355) #27