Percora_a	ANCESTRAL SPECIES	7	ENSGT00390000013113 #7	ENSGT00390000000447 #8	ENSGT00730000111141 #9	ENSGT00390000000292.C #10	ENSGT00940000154065.b #11	ENSGT00940000155131 #24	ENSGT00940000160503 #13	ENSGT00940000158406 #14	ENSGT00940000158231 #15	ENSGT00510000049322 #16	ENSGT00940000162722 #17	ENSGT00940000161651 #18	ENSGT00390000016499 #19	ENSGT00390000000455.a #20	ENSGT00940000157964 #21	ENSGT00390000006278 #22	ENSGT00940000162103	ENSGT00390000014210	ENSGT00650000093475	ENSGT00940000154267.B #25	ENSGT00940000161070 #26	ENSGT00530000063946.a #27	ENSGT00940000155551 #28	ENSGT00940000156294 #29	ENSGT00730000111463 #30	ENSGT00390000015202 #31	ENSGT00530000064274 #33	ENSGT00960000187414	ENSGT01050000245033.c.b.b #37	ENSGT00950000183791	ENSGT00940000165160
Bovidae	ANCESTRAL SPECIES	9	ENSGT00390000000447 #8	ENSGT00730000111141 #9	ENSGT00390000000292.C #10	ENSGT00940000154065.b #11	ENSGT00940000155131 #24	ENSGT00940000160503 #13	ENSGT00940000158406 #14	ENSGT00940000158231 #15	ENSGT00510000049322 #16	ENSGT00390000017491.t.u.t	ENSGT00940000162722 #17	ENSGT00940000161651 #18	ENSGT00390000016499 #19	ENSGT00390000000455.a #20	ENSGT00940000157964 #21	ENSGT00390000006278 #22	ENSGT00940000162103	ENSGT00390000014210	ENSGT00650000093475	ENSGT00940000154267.B #25	ENSGT00940000161070 #26	ENSGT00530000063946.a #27	ENSGT00940000155551 #28	ENSGT00940000156294 #29	ENSGT00730000111463 #30	ENSGT00390000015202 #31	ENSGT00530000064274 #33	ENSGT00960000187414	ENSGT01050000245033.c.b.b.d #37	ENSGT00940000161951	ENSGT00940000162109.B.f
Caprinae	ANCESTRAL SPECIES	42	ENSGT00390000000447 #8	ENSGT00730000111141 #9	ENSGT00390000000292.C #10	ENSGT00940000154065.b #11	ENSGT00940000155131 #24	ENSGT00940000160503 #13	ENSGT00940000158406 #14	ENSGT00940000158231 #15	ENSGT00510000049322 #16	ENSGT00390000017491.t.u.t	ENSGT00940000162722 #17	ENSGT00940000161651 #18	ENSGT00390000016499 #19	ENSGT00390000000455.a #20	ENSGT00940000157964 #21	ENSGT00390000006278 #22	ENSGT00940000162103	ENSGT00390000014210	ENSGT00940000154267.B #25	ENSGT00940000161070 #26	ENSGT00530000063946.a #27	ENSGT00940000155551 #28	ENSGT00940000156294 #29	ENSGT00730000111463 #30	ENSGT00390000015202 #31	ENSGT00530000064274 #33	ENSGT00990000212981.A	ENSGT00990000212981.B	ENSGT01100000266115	ENSGT01010000228926	ENSGT01060000251167
Rambouillet Sheep	MODERN SPECIES		CRYZL1 (ENSOARG00020005822) #7	DONSON (ENSOARG00020005914) #8	SON (ENSOARG00020006185) #9	GART (ENSOARG00020006406) #10	DNAJC28 (ENSOARG00020006577) #11	TMEM50B (ENSOARG00020006611) #12	IFNGR2 (ENSOARG00020006717) #13	IFNAR1 (ENSOARG00020007172) #14	IL10RB (ENSOARG00020007337) #15	IFNAR2 (ENSOARG00020007396) #16	OLIG1 (ENSOARG00020000100) #17	OLIG2 (ENSOARG00020000104) #18	C21orf62 (ENSOARG00020000147) #19	PAXBP1 (ENSOARG00020000179) #20	SYNJ1 (ENSOARG00020000444) #21	CFAP298 (ENSOARG00020001184) #22	ENSOARG00020001232 #23	ENSOARG00020001242 #24	ENSOARG00020001277 #25	HUNK (ENSOARG00020001296) #26	SCAF4 (ENSOARG00020001317) #27	SOD1 (ENSOARG00020001337) #28	TIAM1 (ENSOARG00020001378) #29	KRTAP11-1 (ENSOARG00020001438) #30	KAP7 (ENSOARG00020001442) #31	KAP8 (ENSOARG00020001446) #32	KRTAP8-2 (ENSOARG00020001458) #33	KRTAP21-1 (ENSOARG00020001467) #34	ENSOARG00020001474 #35	ENSOARG00020001483 #36	ENSOARG00020001488 #37
Goat	MODERN SPECIES		CRYZL1 (ENSCHIG00000017812) #7	DONSON (ENSCHIG00000020590) #8	SON (ENSCHIG00000022392) #9	GART (ENSCHIG00000019159) #10	DNAJC28 (ENSCHIG00000010877) #11	TMEM50B (ENSCHIG00000012751) #24	IFNGR2 (ENSCHIG00000017662) #13	IFNAR1 (ENSCHIG00000018032) #14	IL10RB (ENSCHIG00000019891) #15	IFNAR2 (ENSCHIG00000019897) #16	ENSCHIG00000015210	OLIG1 (ENSCHIG00000020025) #17	OLIG2 (ENSCHIG00000007434) #18	PAXBP1 (ENSCHIG00000021245) #20	SYNJ1 (ENSCHIG00000005095) #21	CFAP298 (ENSCHIG00000026948) #22	EVA1C (ENSCHIG00000017088)	URB1 (ENSCHIG00000015645)	MIS18A (ENSCHIG00000008710) #25	HUNK (ENSCHIG00000014504) #26	SCAF4 (ENSCHIG00000008385) #27	SOD1 (ENSCHIG00000014496) #28	TIAM1 (ENSCHIG00000017920) #29	ENSCHIG00000014054	KRTAP11-1 (ENSCHIG00000002902) #30	KRTAP7-1 (ENSCHIG00000008395) #31	ENSCHIG00000012716 #33	ENSCHIG00000002864 #33	ENSCHIG00000011204	ENSCHIG00000009372 #34	ENSCHIG00000010356 #37
Bovinae	ANCESTRAL SPECIES	6	ENSGT00390000000447 #8	ENSGT00730000111141 #9	ENSGT00390000000292.C #10	ENSGT00940000154065.b #11	ENSGT00940000155131 #24	ENSGT00940000160503 #13	ENSGT00940000158406 #14	ENSGT00940000158231 #15	ENSGT00510000049322 #16	ENSGT00390000017491.t.u.t	ENSGT00940000162722 #17	ENSGT00940000161651 #18	ENSGT00390000016499 #19	ENSGT00390000000455.a #20	ENSGT00940000157964 #21	ENSGT00390000006278 #22	ENSGT00940000162103	ENSGT00390000014210	ENSGT00650000093475	ENSGT00940000154267.B #25	ENSGT00940000161070 #26	ENSGT00530000063946.a #27	ENSGT00940000155551 #28	ENSGT00940000156294 #29	ENSGT00730000111463 #30	ENSGT00390000015202 #31	ENSGT00530000064274 #33	ENSGT00960000187414	ENSGT01050000245033.c.b.b.d.b #37	ENSGT00950000186363.a	ENSGT00950000186330
Bos	ANCESTRAL SPECIES	7	ENSGT00730000111141 #9	ENSGT00390000000292.C #10	ENSGT00940000154065.b #11	ENSGT00940000155131 #24	ENSGT00940000160503 #13	ENSGT00940000158406 #14	ENSGT00940000158231 #15	ENSGT00510000049322 #16	ENSGT00990000203553.c.b.o.a	ENSGT00390000017491.t.u.t	ENSGT00940000162722 #17	ENSGT00940000161651 #18	ENSGT00390000016499 #19	ENSGT00390000000455.a #20	ENSGT00940000157964 #21	ENSGT00390000006278 #22	ENSGT00940000162103	ENSGT00390000014210	ENSGT00650000093475	ENSGT00940000154267.B #25	ENSGT00940000161070 #26	ENSGT00530000063946.a #27	ENSGT00940000155551 #28	ENSGT00940000156294 #29	ENSGT00730000111463 #30	ENSGT00390000015202 #31	ENSGT00530000064274 #33	ENSGT00960000187414	ENSGT01050000245033.c.b.a.b ##37	ENSGT01050000245033.c.b.a.a.d ##37	ENSGT00950000186363.a
Bos_a	ANCESTRAL SPECIES	59	ENSGT00730000111141 #9	ENSGT00390000000292.C #10	ENSGT00940000154065.b #11	ENSGT00940000155131 #24	ENSGT00940000160503 #13	ENSGT00940000158406 #14	ENSGT00940000158231 #15	ENSGT00510000049322 #16	ENSGT00990000203553.c.b.o.a	ENSGT00390000017491.t.u.t	ENSGT00940000162722 #17	ENSGT00940000161651 #18	ENSGT00390000016499 #19	ENSGT00390000000455.a #20	ENSGT00940000157964 #21	ENSGT00390000006278 #22	ENSGT00940000162103	ENSGT00390000014210	ENSGT00650000093475	ENSGT00940000154267.B #25	ENSGT00940000161070 #26	ENSGT00530000063946.a #27	ENSGT00940000155551 #28	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000156294 #29	ENSGT00730000111463 #30	ENSGT00390000015202 #31	ENSGT00530000064274 #33	ENSGT00960000187414	ENSGT01050000245033.c.b.a.b ##37	ENSGT01050000245033.c.b.a.a.d ##37
Domestic yak	MODERN SPECIES		CRYZL1 (ENSBGRG00000000142) #7	DONSON (ENSBGRG00000000141) #8	SON (ENSBGRG00000000139) #9	GART (ENSBGRG00000000138) #10	DNAJC28 (ENSBGRG00000000137) #11	TMEM50B (ENSBGRG00000000136) #24	IFNGR2 (ENSBGRG00000000134) #13	IFNAR1 (ENSBGRG00000000133) #14	IL10RB (ENSBGRG00000000132) #15	IFNAR2 (ENSBGRG00000000131) #16	ENSBGRG00000000130	OLIG1 (ENSBGRG00000000129) #17	C21orf62 (ENSBGRG00000000128) #19	PAXBP1 (ENSBGRG00000000127) #20	SYNJ1 (ENSBGRG00000000125) #21	CFAP298 (ENSBGRG00000000124) #22	EVA1C (ENSBGRG00000000123)	URB1 (ENSBGRG00000000122)	ENSBGRG00000000121	MIS18A (ENSBGRG00000000120) #25	HUNK (ENSBGRG00000000119) #26	SCAF4 (ENSBGRG00000000118) #27	SOD1 (ENSBGRG00000000117) #28	ENSBGRG00000000116	ENSBGRG00000000114	TIAM1 (ENSBGRG00000000112) #29	KAP11.1 (ENSBGRG00000000111) #30	KRTAP7-1 (ENSBGRG00000000110) #31	KRTAP8-1 (ENSBGRG00000000109) #33	ENSBGRG00000000108	ENSBGRG00000000107 ##37
Wild yak	MODERN SPECIES	556	DONSON (ENSBMUG00000008602) #8	ENSBMUG00000008561 #9	GART (ENSBMUG00000008528) #10	DNAJC28 (ENSBMUG00000008494) #11	TMEM50B (ENSBMUG00000008487) #24	IFNGR2 (ENSBMUG00000008464) #13	IFNAR1 (ENSBMUG00000008458) #14	IL10RB (ENSBMUG00000008447) #15	IFNAR2 (ENSBMUG00000008422) #16	ENSBMUG00000008399	ENSBMUG00000008393	OLIG2 (ENSBMUG00000008374) #18	C21orf62 (ENSBMUG00000008364) #19	PAXBP1 (ENSBMUG00000008350) #20	SYNJ1 (ENSBMUG00000008123) #21	CFAP298 (ENSBMUG00000007881) #22	EVA1C (ENSBMUG00000007846)	URB1 (ENSBMUG00000007809)	ENSBMUG00000007787	MIS18A (ENSBMUG00000007776) #25	HUNK (ENSBMUG00000007769) #26	SCAF4 (ENSBMUG00000007449) #27	SOD1 (ENSBMUG00000007290) #28
Bos_b	ANCESTRAL SPECIES	5	ENSGT00730000111141 #9	ENSGT00390000000292.C #10	ENSGT00940000154065.b #11	ENSGT00940000155131 #24	ENSGT00940000160503 #13	ENSGT00940000158406 #14	ENSGT00940000158231 #15	ENSGT00510000049322 #16	ENSGT00990000203553.c.b.o.a	ENSGT00390000017491.t.u.t	ENSGT00940000162722 #17	ENSGT00940000161651 #18	ENSGT00390000016499.c #19	ENSGT00390000000455.a #20	ENSGT00940000157964 #21	ENSGT00390000006278 #22	ENSGT00940000162103	ENSGT00390000014210	ENSGT00650000093475	ENSGT00940000154267.B #25	ENSGT00940000161070 #26	ENSGT00530000063946.a #27	ENSGT00940000155551.k #28	ENSGT00940000156294.n #29	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000156294.m #29	ENSGT00730000111463 #30	ENSGT00390000015202 #31	ENSGT00530000064274 #33	ENSGT00960000187414	ENSGT01050000245033.c.b.a.b ##37
Cow	MODERN SPECIES		SON (ENSBTAG00000008482) #9	GART (ENSBTAG00000009188) #10	DNAJC28 (ENSBTAG00000009187) #11	TMEM50B (ENSBTAG00000001258) #24	IFNGR2 (ENSBTAG00000012899) #13	IFNAR1 (ENSBTAG00000021819) #14	IL10RB (ENSBTAG00000019404) #15	IFNAR2 (ENSBTAG00000015212) #16	ENSBTAG00000051429	ENSBTAG00000051548	OLIG1 (ENSBTAG00000037547) #17	OLIG2 (ENSBTAG00000049136) #18	C1H21orf62 (ENSBTAG00000043993) #19	PAXBP1 (ENSBTAG00000003064) #20	SYNJ1 (ENSBTAG00000003063) #21	CFAP298 (ENSBTAG00000003059) #22	EVA1C (ENSBTAG00000017310)	URB1 (ENSBTAG00000012412)	MRAP (ENSBTAG00000023718)	MIS18A (ENSBTAG00000016619) #25	HUNK (ENSBTAG00000020762) #26	SCAF4 (ENSBTAG00000018855) #27	SOD1 (ENSBTAG00000018854) #28	TIAM1 (ENSBTAG00000017839) #29	ENSBTAG00000048631 #29	KRTAP11-1 (ENSBTAG00000034869) #30	KRTAP7-1 (ENSBTAG00000046804) #31	KRTAP8-1 (ENSBTAG00000015812) #33	ENSBTAG00000048503	ENSBTAG00000050662 ##37	ENSBTAG00000054173 #37
American bison	MODERN SPECIES	3339	CRYZL1 (ENSBBBG00000017942) #7	DONSON (ENSBBBG00000017889) #8	SON (ENSBBBG00000017871) #9	GART (ENSBBBG00000017806) #10	DNAJC28 (ENSBBBG00000017748) #11	TMEM50B (ENSBBBG00000017742) #24	IFNGR2 (ENSBBBG00000017726) #13	IFNAR1 (ENSBBBG00000017713) #14	IL10RB (ENSBBBG00000017701) #15	ENSBBBG00000017687 #16	ENSBBBG00000004373	OLIG2 (ENSBBBG00000017676) #18	C21orf62 (ENSBBBG00000017668) #19	PAXBP1 (ENSBBBG00000017659) #20	SYNJ1 (ENSBBBG00000007094) #21	CFAP298 (ENSBBBG00000017374) #22	EVA1C (ENSBBBG00000017293)	URB1 (ENSBBBG00000004256)	ENSBBBG00000017133	MIS18A (ENSBBBG00000017118) #25	HUNK (ENSBBBG00000008926) #26	SCAF4 (ENSBBBG00000017043) #27	SOD1 (ENSBBBG00000016855) #28	TIAM1 (ENSBBBG00000007661) #29	CCDC102B (ENSBBBG00000004123)	TMX3 (ENSBBBG00000004107)	ENSBBBG00000006848	ENSBBBG00000000749	DSEL (ENSBBBG00000000763)	CDH19 (ENSBBBG00000016564)	CDH7 (ENSBBBG00000016500)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	87		VPS41 (ENSMMSG00000008890)	POU6F2 (ENSMMSG00000009061)	ENSMMSG00000009247	YAE1 (ENSMMSG00000009286)	RALA (ENSMMSG00000009317)	CDK13 (ENSMMSG00000009356)	MPLKIP (ENSMMSG00000009516)	SUGCT (ENSMMSG00000009548)	INHBA (ENSMMSG00000009680)	ENSMMSG00000009697	GLI3 (ENSMMSG00000009711)	C7orf25 (ENSMMSG00000009736)	PSMA2 (ENSMMSG00000009746)	MRPL32 (ENSMMSG00000009758)	ENSMMSG00000009775 #22	ENSMMSG00000009803	HECW1 (ENSMMSG00000009873)	ENSMMSG00000010172	STK17A (ENSMMSG00000010195)	COA1 (ENSMMSG00000010212)	BLVRA (ENSMMSG00000010224)	POLM (ENSMMSG00000010267)	AEBP1 (ENSMMSG00000010337)	POLD2 (ENSMMSG00000010417)	MYL7 (ENSMMSG00000010461)	GCK (ENSMMSG00000010554)	YKT6 (ENSMMSG00000010792)	CAMK2B (ENSMMSG00000010896)	NUDCD3 (ENSMMSG00000011228)	NPC1L1 (ENSMMSG00000011308)
Siberian musk deer	MODERN SPECIES	1262											OLIG1 (ENSMMSG00000022099) #17	OLIG2 (ENSMMSG00000022105) #18	C21orf62 (ENSMMSG00000022112) #19	PAXBP1 (ENSMMSG00000022130) #20	SYNJ1 (ENSMMSG00000022241) #21	ENSMMSG00000022487 #22	EVA1C (ENSMMSG00000022510)	URB1 (ENSMMSG00000022537)	ENSMMSG00000022559	MIS18A (ENSMMSG00000022567) #25	HUNK (ENSMMSG00000022584) #26	SCAF4 (ENSMMSG00000022612) #27	ENSMMSG00000022653 #28