Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00400000022349 #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000165659 #13	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000162681	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00410000028085	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00940000164212	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32
Glires	ANCESTRAL SPECIES	5	ENSGT00400000022349 #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000165659 #13	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000162681	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00940000164212	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811
Rodentia	ANCESTRAL SPECIES	6	ENSGT00400000022349 #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000165659 #13	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000162681	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00940000164212	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000157472 #7	ENSGT00400000022349 #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000165659 #13	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00940000157472 #7	ENSGT00400000022349 #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000165659 #13	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Lesser Egyptian jerboa	MODERN SPECIES	41	Tbc1d22b (ENSJJAG00000016116) #7	Rnf8 (ENSJJAG00000015147) #8	Cmtr1 (ENSJJAG00000018982) #9	Ccdc167 (ENSJJAG00000000635) #10	Mdga1 (ENSJJAG00000011692) #11	Zfand3 (ENSJJAG00000013176) #12	ENSJJAG00000011902 #13	Btbd9 (ENSJJAG00000016569) #14	Glo1 (ENSJJAG00000016886) #15	Dnah8 (ENSJJAG00000015946) #16	Glp1r (ENSJJAG00000009597) #17	Saysd1 (ENSJJAG00000015133) #18	Kcnk5 (ENSJJAG00000010308) #19	Kcnk16 (ENSJJAG00000003956) #20	Kif6 (ENSJJAG00000015173) #21	Daam2 (ENSJJAG00000013670) #22	Mocs1 (ENSJJAG00000008645) #23	Lrfn2 (ENSJJAG00000006722) #24	Unc5cl (ENSJJAG00000012134) #25	Tspo2 (ENSJJAG00000010581) #26	Apobec2 (ENSJJAG00000009733) #27	Oard1 (ENSJJAG00000017429) #28	Nfya (ENSJJAG00000017507) #29	Treml1 (ENSJJAG00000016142) #30	Treml2 (ENSJJAG00000020018) #31	Trem1 (ENSJJAG00000002311) #32	Foxp4 (ENSJJAG00000012682) #33	Mdfi (ENSJJAG00000011462) #34	Tfeb (ENSJJAG00000006884) #35	Pgc (ENSJJAG00000020186) #36	Frs3 (ENSJJAG00000016510) #37
Muroidea	ANCESTRAL SPECIES	42														ENSGT00940000162681	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Muroidea_A	ANCESTRAL SPECIES	8				ENSGT00940000154107.a	ENSGT00940000154995	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.A	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b	ENSGT00530000063609.b	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Cricetidae	ANCESTRAL SPECIES	9			ENSGT00940000154107.a	ENSGT00940000154995	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.A	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b	ENSGT00530000063609.b	ENSGT00940000162681	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Cricetidae_B	ANCESTRAL SPECIES	32			ENSGT00940000154107.a	ENSGT00940000154995	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.A	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b	ENSGT00530000063609.b	ENSGT00940000162681	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Northern American deer mouse	MODERN SPECIES	13	Ptchd4 (ENSPEMG00000023455)	Sgo1 (ENSPEMG00000013004)	Pp2d1 (ENSPEMG00000019407)	Rab5a (ENSPEMG00000029423)	Efhb (ENSPEMG00000020099)	ENSPEMG00000031002	Kcnh8 (ENSPEMG00000021076)	ENSPEMG00000004477	Satb1 (ENSPEMG00000019744)	Tbc1d5 (ENSPEMG00000019337)	ENSPEMG00000019815	Dazl (ENSPEMG00000019679)	Rftn1 (ENSPEMG00000010897)	ENSPEMG00000025845	Kif6 (ENSPEMG00000013628) #21	Daam2 (ENSPEMG00000001066) #22	Mocs1 (ENSPEMG00000023108) #23	Lrfn2 (ENSPEMG00000019605) #24	Unc5cl (ENSPEMG00000011269) #25	Tspo2 (ENSPEMG00000010280) #26	Apobec2 (ENSPEMG00000005724) #27	Oard1 (ENSPEMG00000024978) #28	Nfya (ENSPEMG00000012280) #29	Treml1 (ENSPEMG00000012297) #30	Trem2 (ENSPEMG00000013350)	ENSPEMG00000001398 ##31	ENSPEMG00000016786 #31	Treml4 (ENSPEMG00000017763) ##31	Trem1 (ENSPEMG00000008299) #32	ENSPEMG00000028485 ##31
Prairie vole	MODERN SPECIES	352														Rftn1 (ENSMOCG00000017377)	Kif6 (ENSMOCG00000015806) #21	Daam2 (ENSMOCG00000020350) #22	Mocs1 (ENSMOCG00000005801) #23	ENSMOCG00000002794	Lrfn2 (ENSMOCG00000020146) #24	Unc5cl (ENSMOCG00000021521) #25	Tspo2 (ENSMOCG00000022117) #26	Apobec2 (ENSMOCG00000001904) #27	Oard1 (ENSMOCG00000004762) #28	Nfya (ENSMOCG00000020612) #29	Treml1 (ENSMOCG00000017552) #30	Trem2 (ENSMOCG00000015114)	ENSMOCG00000013712 ##31	ENSMOCG00000013645 #31	Treml4 (ENSMOCG00000005147) ##31	Trem1 (ENSMOCG00000022788) #32	1700067P10Rik (ENSMOCG00000013855)
Cricetinae	ANCESTRAL SPECIES	28			ENSGT00940000154107.a	ENSGT00940000154995	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.A	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b	ENSGT00530000063609.b	ENSGT00940000162681	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Golden Hamster	MODERN SPECIES	649		Sgo1 (ENSMAUG00000013572)	Kat2b (ENSMAUG00000013162)	Pp2d1 (ENSMAUG00000012292)	Rab5a (ENSMAUG00000011242)	Efhb (ENSMAUG00000009772)	Kcnh8 (ENSMAUG00000004139)	ENSMAUG00000000482	ENSMAUG00000000207	ENSMAUG00000019938	Tbc1d5 (ENSMAUG00000012827)	Plcl2 (ENSMAUG00000008046)	Dazl (ENSMAUG00000018931)	Rftn1 (ENSMAUG00000017586)	Kif6 (ENSMAUG00000016153) #21	Daam2 (ENSMAUG00000011180) #22	Mocs1 (ENSMAUG00000009643) #23	Lrfn2 (ENSMAUG00000008478) #24	Unc5cl (ENSMAUG00000006999) #25	Tspo2 (ENSMAUG00000000293) #26	Apobec2 (ENSMAUG00000011016) #27	Nfya (ENSMAUG00000019965) #29	Treml1 (ENSMAUG00000019166) #30	Trem2 (ENSMAUG00000018601)	ENSMAUG00000009298	Treml2 (ENSMAUG00000007921) #31	Treml4 (ENSMAUG00000003024) ##31	Trem1 (ENSMAUG00000001065) #32	1700067P10Rik (ENSMAUG00000015408)	1700122O11Rik (ENSMAUG00000015368)	Foxp4 (ENSMAUG00000012077) #33
Chinese hamster chok1gshd	MODERN SPECIES	184	Sgo1 (ENSCGRG00001021224)	Kat2b (ENSCGRG00001006983)	Pp2d1 (ENSCGRG00001019391)	ENSCGRG00001020018	ENSCGRG00001004203	Efhb (ENSCGRG00001007930)	ENSCGRG00001001002	Kcnh8 (ENSCGRG00001023448)	Satb1 (ENSCGRG00001012162)	Tbc1d5 (ENSCGRG00001012430)	Plcl2 (ENSCGRG00001019852)	Dazl (ENSCGRG00001021961)	Rftn1 (ENSCGRG00001005272)	ENSCGRG00001015490	Kif6 (ENSCGRG00001021327) #21	Daam2 (ENSCGRG00001016238) #22	Mocs1 (ENSCGRG00001021044) #23	Lrfn2 (ENSCGRG00001023899) #24	ENSCGRG00001016038	Unc5cl (ENSCGRG00001020057) #25	Tspo2 (ENSCGRG00001011008) #26	Apobec2 (ENSCGRG00001014983) #27	Oard1 (ENSCGRG00001019722) #28	Nfya (ENSCGRG00001008539) #29	Treml1 (ENSCGRG00001003109) #30	Trem2 (ENSCGRG00001004763)	ENSCGRG00001010441 ##31	Treml2 (ENSCGRG00001017130) #31	Treml4 (ENSCGRG00001019063) ##31	Trem1 (ENSCGRG00001010134) #32	ENSCGRG00001011186 ##31
Murinae	ANCESTRAL SPECIES	9	ENSGT00690000101915	ENSGT00940000160996	ENSGT00940000160912	ENSGT00940000154107.a	ENSGT00940000154995	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.A	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b	ENSGT00530000063609.b	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Mus	ANCESTRAL SPECIES	16	ENSGT00690000101915	ENSGT00940000160996	ENSGT00940000160912	ENSGT00940000154107.a	ENSGT00940000154995	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.A	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b	ENSGT00530000063609.b	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Mus_A	ANCESTRAL SPECIES	10	ENSGT00690000101915	ENSGT00940000160996	ENSGT00940000160912	ENSGT00940000154107.a	ENSGT00940000154995	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.A	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b	ENSGT00530000063609.b	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d.i ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT00940000153835.a.b.d.j ##31	ENSGT01030000234811
Mus_B	ANCESTRAL SPECIES	9	ENSGT00690000101915	ENSGT00940000160996	ENSGT00940000160912	ENSGT00940000154107.a	ENSGT00940000154995.q.a	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.A	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b	ENSGT00530000063609.b	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d.i ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT00940000153835.a.b.d.j.a ##31	ENSGT01030000234811
Mouse	MODERN SPECIES	8	Slc5a7 (ENSMUSG00000023945)	Sult1c1 (ENSMUSG00000023943)	Sult1c2 (ENSMUSG00000023122)	Sgo1 (ENSMUSG00000023940)	Kat2b (ENSMUSG00000000708)	Pp2d1 (ENSMUSG00000044957)	Rab5a (ENSMUSG00000017831)	Efhb (ENSMUSG00000023931)	Kcnh8 (ENSMUSG00000035580)	Satb1 (ENSMUSG00000023927)	Tbc1d5 (ENSMUSG00000023923)	Plcl2 (ENSMUSG00000038910)	Dazl (ENSMUSG00000010592)	Rftn1 (ENSMUSG00000039316)	Kif6 (ENSMUSG00000023999) #21	Daam2 (ENSMUSG00000040260) #22	Mocs1 (ENSMUSG00000064120) #23	Lrfn2 (ENSMUSG00000040490) #24	Unc5cl (ENSMUSG00000043592) #25	Tspo2 (ENSMUSG00000023995) #26	Apobec2 (ENSMUSG00000040694) #27	Oard1 (ENSMUSG00000040771) #28	Nfya (ENSMUSG00000023994) #29	Treml1 (ENSMUSG00000023993) #30	Trem2 (ENSMUSG00000023992)	B430306N03Rik (ENSMUSG00000043740) ##31	Treml2 (ENSMUSG00000071068) #31	Treml4 (ENSMUSG00000051682) ##31	Trem3 (ENSMUSG00000041754) #32	Trem1 (ENSMUSG00000042265) #32	A530064D06Rik (ENSMUSG00000043939) ##31
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000158714	ENSGT00690000101915	ENSGT00940000160996	ENSGT00940000154107.a	ENSGT00940000154995.q.a	ENSGT00390000017863	ENSGT00940000154337	ENSGT00530000063528.A.b	ENSGT00940000156869	ENSGT00390000008096.A	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b	ENSGT00530000063609.b	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d.i ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT00940000153835.a.b.d.j.a ##31	ENSGT01030000234811
spretus	MODERN SPECIES	8	St6gal2 (MGP_SPRETEiJ_G0022659)	MGP_SPRETEiJ_G0022658	Slc5a7 (MGP_SPRETEiJ_G0022657)	Sult1c2 (MGP_SPRETEiJ_G0022656)	Sgo1 (MGP_SPRETEiJ_G0022655)	Kat2b (MGP_SPRETEiJ_G0022654)	Rab5a (MGP_SPRETEiJ_G0022653)	Efhb (MGP_SPRETEiJ_G0022652)	Kcnh8 (MGP_SPRETEiJ_G0022651)	Satb1 (MGP_SPRETEiJ_G0022650)	Tbc1d5 (MGP_SPRETEiJ_G0022649)	Plcl2 (MGP_SPRETEiJ_G0022648)	Dazl (MGP_SPRETEiJ_G0022647)	Rftn1 (MGP_SPRETEiJ_G0022646)	Kif6 (MGP_SPRETEiJ_G0022645) #21	Daam2 (MGP_SPRETEiJ_G0022644) #22	Mocs1 (MGP_SPRETEiJ_G0022643) #23	Lrfn2 (MGP_SPRETEiJ_G0022642) #24	Unc5cl (MGP_SPRETEiJ_G0022641) #25	Tspo2 (MGP_SPRETEiJ_G0022640) #26	Apobec2 (MGP_SPRETEiJ_G0022639) #27	Oard1 (MGP_SPRETEiJ_G0022638) #28	Nfya (MGP_SPRETEiJ_G0022637) #29	Treml1 (MGP_SPRETEiJ_G0022636) #30	Trem2 (MGP_SPRETEiJ_G0022635)	MGP_SPRETEiJ_G0022634 ##31	Treml2 (MGP_SPRETEiJ_G0022633) #31	Treml4 (MGP_SPRETEiJ_G0022632) ##31	Trem3 (MGP_SPRETEiJ_G0022631) #32	Trem1 (MGP_SPRETEiJ_G0022630) #32	MGP_SPRETEiJ_G0022629 ##31
Steppe mouse	MODERN SPECIES	2441															ENSMSIG00000031452 #21	Daam2 (ENSMSIG00000031451) #22	Mocs1 (ENSMSIG00000031448) #23
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021747	Slc5a7 (MGP_CAROLIEiJ_G0021746)	Sult1c1 (MGP_CAROLIEiJ_G0021745)	Sgo1 (MGP_CAROLIEiJ_G0021744)	Kat2b (MGP_CAROLIEiJ_G0021743)	Pp2d1 (MGP_CAROLIEiJ_G0021742)	Rab5a (MGP_CAROLIEiJ_G0021741)	Efhb (MGP_CAROLIEiJ_G0021740)	Kcnh8 (MGP_CAROLIEiJ_G0021739)	MGP_CAROLIEiJ_G0021738	Tbc1d5 (MGP_CAROLIEiJ_G0021737)	Plcl2 (MGP_CAROLIEiJ_G0021736)	Dazl (MGP_CAROLIEiJ_G0021735)	Rftn1 (MGP_CAROLIEiJ_G0021734)	Kif6 (MGP_CAROLIEiJ_G0021733) #21	Daam2 (MGP_CAROLIEiJ_G0021732) #22	Mocs1 (MGP_CAROLIEiJ_G0021731) #23	Lrfn2 (MGP_CAROLIEiJ_G0021730) #24	Unc5cl (MGP_CAROLIEiJ_G0021729) #25	Tspo2 (MGP_CAROLIEiJ_G0021728) #26	Apobec2 (MGP_CAROLIEiJ_G0021727) #27	Oard1 (MGP_CAROLIEiJ_G0021726) #28	Nfya (MGP_CAROLIEiJ_G0021725) #29	Treml1 (MGP_CAROLIEiJ_G0021724) #30	Trem2 (MGP_CAROLIEiJ_G0021723)	MGP_CAROLIEiJ_G0021722 ##31	Treml2 (MGP_CAROLIEiJ_G0021721) #31	Treml4 (MGP_CAROLIEiJ_G0021720) ##31	Trem3 (MGP_CAROLIEiJ_G0021719) #32	Trem1 (MGP_CAROLIEiJ_G0021718) #32	MGP_CAROLIEiJ_G0021717 ##31
Shrew mouse	MODERN SPECIES	9	Slc5a7 (MGP_PahariEiJ_G0020736)	Sult1c1 (MGP_PahariEiJ_G0020735)	Sult1c2 (MGP_PahariEiJ_G0020734)	Sgo1 (MGP_PahariEiJ_G0020733)	Kat2b (MGP_PahariEiJ_G0020732)	MGP_PahariEiJ_G0020731	Rab5a (MGP_PahariEiJ_G0020730)	Efhb (MGP_PahariEiJ_G0020729)	Kcnh8 (MGP_PahariEiJ_G0020728)	Satb1 (MGP_PahariEiJ_G0020727)	Tbc1d5 (MGP_PahariEiJ_G0020726)	Plcl2 (MGP_PahariEiJ_G0020725)	Dazl (MGP_PahariEiJ_G0020724)	Rftn1 (MGP_PahariEiJ_G0020723)	Kif6 (MGP_PahariEiJ_G0020722) #21	Daam2 (MGP_PahariEiJ_G0020721) #22	Mocs1 (MGP_PahariEiJ_G0020720) #23	Lrfn2 (MGP_PahariEiJ_G0020719) #24	Unc5cl (MGP_PahariEiJ_G0020718) #25	Tspo2 (MGP_PahariEiJ_G0020717) #26	Apobec2 (MGP_PahariEiJ_G0020716) #27	Oard1 (MGP_PahariEiJ_G0020715) #28	Nfya (MGP_PahariEiJ_G0020714) #29	Treml1 (MGP_PahariEiJ_G0020713) #30	Trem2 (MGP_PahariEiJ_G0020712)	MGP_PahariEiJ_G0020711 ##31	Treml2 (MGP_PahariEiJ_G0020710) #31	Treml4 (MGP_PahariEiJ_G0020709) ##31	Trem3 (MGP_PahariEiJ_G0020708) #32	MGP_PahariEiJ_G0020707 #32	1700067P10Rik (MGP_PahariEiJ_G0020706)
Rat	MODERN SPECIES	19	ENSRNOG00000068934	St6gal2 (ENSRNOG00000046515)	Vom2r76 (ENSRNOG00000045587)	Vom2r77 (ENSRNOG00000049443)	Pot1b (ENSRNOG00000047439)	Adgre4 (ENSRNOG00000050325)	LOC691414 (ENSRNOG00000063425)	LOC103690742 (ENSRNOG00000067240)	LOC108351885 (ENSRNOG00000068779)	LOC360998 (ENSRNOG00000062590)	AABR07069611.1 (ENSRNOG00000061279)	LOC102557419 (ENSRNOG00000048686)	Dazl (ENSRNOG00000023474)	Rftn1 (ENSRNOG00000011321)	Kif6 (ENSRNOG00000011453) #21	Daam2 (ENSRNOG00000053945) #22	Mocs1 (ENSRNOG00000011784) #23	Lrfn2 (ENSRNOG00000011803) #24	Unc5cl (ENSRNOG00000046601) #25	Tspo2 (ENSRNOG00000050521) #26	Apobec2 (ENSRNOG00000012303) #27	Oard1 (ENSRNOG00000012679) #28	Nfya (ENSRNOG00000012702) #29	Treml1 (ENSRNOG00000040109) #30	Trem2 (ENSRNOG00000013578)	RGD1307182 (ENSRNOG00000042230) ##31	Treml2 (ENSRNOG00000013554) #31	Treml4 (ENSRNOG00000042360) ##31	Trem3 (ENSRNOG00000013748) #32	Trem1 (ENSRNOG00000022859) #32	AABR07066753.1 (ENSRNOG00000032086) ##31
Upper Galilee mountains blind mole rat	MODERN SPECIES	1019																Daam2 (ENSNGAG00000013339) #22	Mocs1 (ENSNGAG00000003061) #23	ENSNGAG00000006663	Lrfn2 (ENSNGAG00000004861) #24	Unc5cl (ENSNGAG00000024251) #25	Tspo2 (ENSNGAG00000022449) #26	Apobec2 (ENSNGAG00000013717) #27	Oard1 (ENSNGAG00000014824) #28	Nfya (ENSNGAG00000018493) #29	Treml1 (ENSNGAG00000018202) #30	Trem2 (ENSNGAG00000000293)	ENSNGAG00000011786 ##31	Treml2 (ENSNGAG00000014362) #31	Treml4 (ENSNGAG00000006803) ##31	ENSNGAG00000015489 #32	Trem1 (ENSNGAG00000019375) #32
Kangaroo rat	MODERN SPECIES	439	Fgd2 (ENSDORG00000007844)	Pim1 (ENSDORG00000024451)	Tbc1d22b (ENSDORG00000012258) #7	ENSDORG00000025463 #8	Cmtr1 (ENSDORG00000005445) #9	Ccdc167 (ENSDORG00000005449) #10	Mdga1 (ENSDORG00000001338) #11	Zfand3 (ENSDORG00000013223) #12	Btbd9 (ENSDORG00000013224) #14	Glo1 (ENSDORG00000006369) #15	Dnah8 (ENSDORG00000006371) #16	Glp1r (ENSDORG00000003204) #17	Kcnk5 (ENSDORG00000016034) #19	Kcnk16 (ENSDORG00000000147) #20	Kif6 (ENSDORG00000015745) #21	Daam2 (ENSDORG00000007350) #22	Mocs1 (ENSDORG00000007352) #23	ENSDORG00000027366
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00400000022349 #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000165659 #13	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000162681	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00940000164212	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000157472 #7	ENSGT00400000022349 #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201.b #11	ENSGT00390000014679 #12	ENSGT00940000165659 #13	ENSGT00940000158298 #14	ENSGT00390000009312.h #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT00940000158700 #33	ENSGT00940000160187 #34
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000157472 #7	ENSGT00400000022349 #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201.b #11	ENSGT00390000014679 #12	ENSGT00940000165659 #13	ENSGT00940000158298 #14	ENSGT00390000009312.h #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT00940000158700 #33	ENSGT00940000160187 #34
Guinea pig	MODERN SPECIES	15	RNF8 (ENSCPOG00000040177) #8	TBC1D22B (ENSCPOG00000002663) #7	ENSCPOG00000012647	PIM1 (ENSCPOG00000024842)	FGD2 (ENSCPOG00000001215)	MTCH1 (ENSCPOG00000019338)	PI16 (ENSCPOG00000026871)	C6orf89 (ENSCPOG00000033697)	PPIL1 (ENSCPOG00000033427)	CPNE5 (ENSCPOG00000019269)	RAB44 (ENSCPOG00000035721)	CDKN1A (ENSCPOG00000030530)	SRSF3 (ENSCPOG00000039027)	KCNK16 (ENSCPOG00000036576) #20	KIF6 (ENSCPOG00000038557) #21	DAAM2 (ENSCPOG00000008247) #22	MOCS1 (ENSCPOG00000008257) #23	LRFN2 (ENSCPOG00000022499) #24	TSPO2 (ENSCPOG00000021148) #26	UNC5CL (ENSCPOG00000011138) #25	APOBEC2 (ENSCPOG00000036103) #27	OARD1 (ENSCPOG00000014303) #28	NFYA (ENSCPOG00000011146) #29	TREML1 (ENSCPOG00000004111) #30	TREM2 (ENSCPOG00000004115)	ENSCPOG00000033984 ##31	ENSCPOG00000027015 #31	ENSCPOG00000038425 ##31	ENSCPOG00000032015 #32	FOXP4 (ENSCPOG00000022669) #33	MDFI (ENSCPOG00000011270) #34
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00390000010210 #10	ENSGT00940000157172 #9	ENSGT00400000022349 #8	ENSGT00940000157472 #7	ENSGT00940000153394.c.a.h	ENSGT00940000161251	ENSGT00390000000020.a	ENSGT00940000162458	ENSGT00390000014270	ENSGT00940000153189.C	ENSGT00940000156194	ENSGT00940000160379	ENSGT00940000159918.a.b	ENSGT00910000144115.a	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000182368	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00470000042299 #32	ENSGT00940000158700 #33	ENSGT00940000160187 #34	ENSGT00940000159691 #35
Degu	MODERN SPECIES	46	GLP1R (ENSODEG00000016982) #17	DNAH8 (ENSODEG00000016773) #16	GLO1 (ENSODEG00000016507) #15	BTBD9 (ENSODEG00000016311) #14	ENSODEG00000016428 #13	MDGA1 (ENSODEG00000016824) #11	CMTR1 (ENSODEG00000017441) #9	TBC1D22B (ENSODEG00000016816) #7	PIM1 (ENSODEG00000016613)	MTCH1 (ENSODEG00000016821)	ENSODEG00000016828	ENSODEG00000016774	CPNE5 (ENSODEG00000016928)	CDKN1A (ENSODEG00000016501)	KIF6 (ENSODEG00000016977) #21	DAAM2 (ENSODEG00000016457) #22	MOCS1 (ENSODEG00000016567) #23	ENSODEG00000016678	UNC5CL (ENSODEG00000016082) #25	APOBEC2 (ENSODEG00000016183) #27	OARD1 (ENSODEG00000016459) #28	NFYA (ENSODEG00000016486) #29	FOXP4 (ENSODEG00000016118) #33	MDFI (ENSODEG00000016228) #34	TFEB (ENSODEG00000016378) #35	PGC (ENSODEG00000016519) #36	FRS3 (ENSODEG00000016315) #37	ENSODEG00000016072	USP49 (ENSODEG00000016122)	ENSODEG00000016278	BYSL (ENSODEG00000016059)
Long-tailed chinchilla	MODERN SPECIES	144	CMTR1 (ENSCLAG00000012181) #9	RNF8 (ENSCLAG00000013628) #8	TBC1D22B (ENSCLAG00000013681) #7	PIM1 (ENSCLAG00000008817)	FGD2 (ENSCLAG00000011231)	MTCH1 (ENSCLAG00000014424)	PI16 (ENSCLAG00000014479)	C6orf89 (ENSCLAG00000007874)	PPIL1 (ENSCLAG00000015970)	CPNE5 (ENSCLAG00000010448)	RAB44 (ENSCLAG00000010513)	CDKN1A (ENSCLAG00000011180)	ENSCLAG00000011521	SRSF3 (ENSCLAG00000010676)	KIF6 (ENSCLAG00000011516) #21	DAAM2 (ENSCLAG00000011749) #22	MOCS1 (ENSCLAG00000009753) #23	ENSCLAG00000017836	LRFN2 (ENSCLAG00000009419) #24	UNC5CL (ENSCLAG00000010169) #25	TSPO2 (ENSCLAG00000011909) #26	APOBEC2 (ENSCLAG00000013817) #27	OARD1 (ENSCLAG00000013867) #28	NFYA (ENSCLAG00000012939) #29	TREML1 (ENSCLAG00000008265) #30	TREM2 (ENSCLAG00000009639)	ENSCLAG00000011026 ##31	ENSCLAG00000013447 #32	FOXP4 (ENSCLAG00000010648) #33	MDFI (ENSCLAG00000009085) #34	TFEB (ENSCLAG00000010323) #35
Naked mole-rat female	MODERN SPECIES	4	ENSHGLG00000046458	ENSHGLG00000012947	ENSHGLG00000012443	BTBD9 (ENSHGLG00000017336) #14	ENSHGLG00000041323	Glo1 (ENSHGLG00000049823) #15	DNAH8 (ENSHGLG00000019200) #16	ENSHGLG00000017306	ENSHGLG00000039915	GLP1R (ENSHGLG00000017023) #17	SAYSD1 (ENSHGLG00000017010) #18	KCNK5 (ENSHGLG00000033812) #19	ENSHGLG00000016993 #20	ENSHGLG00000011685	KIF6 (ENSHGLG00000017182) #21	DAAM2 (ENSHGLG00000017172) #22	MOCS1 (ENSHGLG00000017153) #23	LRFN2 (ENSHGLG00000032699) #24	UNC5CL (ENSHGLG00000017127) #25	TSPO2 (ENSHGLG00000043944) #26	APOBEC2 (ENSHGLG00000017169) #27	OARD1 (ENSHGLG00000038691) #28	NFYA (ENSHGLG00000047559) #29	TREML1 (ENSHGLG00000050484) #30	ENSHGLG00000013285	ENSHGLG00000050475 ##31	TREML2 (ENSHGLG00000043090) #31	ENSHGLG00000045434 ##31	ENSHGLG00000041889	ENSHGLG00000033752	FOXP4 (ENSHGLG00000017157) #33
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000157472 #7	ENSGT00400000022349.e #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000162681	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00960000192091	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00940000164212	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811
Marmotini	ANCESTRAL SPECIES	18	ENSGT00940000157472 #7	ENSGT00400000022349.e #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000162681	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714.s #29	ENSGT00940000164212	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00940000153835.a.b.c.a.a ##31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00940000157472 #7	ENSGT00400000022349.e #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000156775 #19	ENSGT00940000162681	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00940000182368	ENSGT00950000182815.b #25	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714.s #29	ENSGT00940000164212	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00680000101580
Squirrel	MODERN SPECIES	76	TBC1D22B (ENSSTOG00000013887) #7	ENSSTOG00000013893 #8	CMTR1 (ENSSTOG00000016546) #9	CCDC167 (ENSSTOG00000016548) #10	MDGA1 (ENSSTOG00000009721) #11	ZFAND3 (ENSSTOG00000005782) #12	BTBD9 (ENSSTOG00000005795) #14	GLO1 (ENSSTOG00000005821) #15	DNAH8 (ENSSTOG00000005829) #16	GLP1R (ENSSTOG00000006609) #17	SAYSD1 (ENSSTOG00000026699) #18	KCNK5 (ENSSTOG00000022013) #19	KCNK17 (ENSSTOG00000027190)	KCNK16 (ENSSTOG00000005992) #20	KIF6 (ENSSTOG00000009994) #21	DAAM2 (ENSSTOG00000001903) #22	MOCS1 (ENSSTOG00000001928) #23	LRFN2 (ENSSTOG00000006950) #24	APOBEC2 (ENSSTOG00000023643) #27	UNC5CL (ENSSTOG00000013292) #25	OARD1 (ENSSTOG00000013301) #28	ENSSTOG00000023405 #29	ENSSTOG00000031176	TREML1 (ENSSTOG00000013307) #30	TREM2 (ENSSTOG00000010211)	TREML2 (ENSSTOG00000025947) #31	ENSSTOG00000019791 #32	TREM1 (ENSSTOG00000000051) #32	FOXP4 (ENSSTOG00000014398) #33	MDFI (ENSSTOG00000024420) #34	TFEB (ENSSTOG00000015338) #35
Arctic ground squirrel	MODERN SPECIES	25	RNF8 (ENSUPAG00010016181) #8	ENSUPAG00010016190	CMTR1 (ENSUPAG00010016197) #9	CCDC167 (ENSUPAG00010016246) #10	MDGA1 (ENSUPAG00010016292) #11	ZFAND3 (ENSUPAG00010016367) #12	BTBD9 (ENSUPAG00010016398) #14	GLO1 (ENSUPAG00010016426) #15	DNAH8 (ENSUPAG00010016449) #16	GLP1R (ENSUPAG00010016830) #17	SAYSD1 (ENSUPAG00010016843) #18	KCNK5 (ENSUPAG00010016848) #19	KCNK17 (ENSUPAG00010016856)	KCNK16 (ENSUPAG00010016871) #20	KIF6 (ENSUPAG00010016881) #21	DAAM2 (ENSUPAG00010016906) #22	MOCS1 (ENSUPAG00010016933) #23	ENSUPAG00010016970	UNC5CL (ENSUPAG00010016985) #25	APOBEC2 (ENSUPAG00010017000) #27	OARD1 (ENSUPAG00010017009) #28	NFYA (ENSUPAG00010017028) #29	TREML1 (ENSUPAG00010017090) #30	TREM2 (ENSUPAG00010017095)	ENSUPAG00010017098 ##31	TREML2 (ENSUPAG00010017100) #31	ENSUPAG00010017104 #32	TREM1 (ENSUPAG00010017106) #32	ENSUPAG00010017111	ENSUPAG00010017118	FOXP4 (ENSUPAG00010017127) #33
Alpin marmot	MODERN SPECIES	20	TBC1D22B (ENSMMMG00000024393) #7	RNF8 (ENSMMMG00000024396) #8	CMTR1 (ENSMMMG00000024403) #9	CCDC167 (ENSMMMG00000024416) #10	MDGA1 (ENSMMMG00000024419) #11	ZFAND3 (ENSMMMG00000024424) #12	BTBD9 (ENSMMMG00000024425) #14	GLO1 (ENSMMMG00000024428) #15	DNAH8 (ENSMMMG00000024433) #16	GLP1R (ENSMMMG00000024447) #17	SAYSD1 (ENSMMMG00000024448) #18	KCNK5 (ENSMMMG00000024449) #19	KCNK17 (ENSMMMG00000024450)	KCNK16 (ENSMMMG00000024451) #20	KIF6 (ENSMMMG00000024452) #21	ENSMMMG00000024454 #22	MOCS1 (ENSMMMG00000024456) #23	LRFN2 (ENSMMMG00000024458) #24	UNC5CL (ENSMMMG00000024460) #25	APOBEC2 (ENSMMMG00000024461) #27	ENSMMMG00000024462 #28	NFYA (ENSMMMG00000024463) #29	TREML1 (ENSMMMG00000024464) #30	TREM2 (ENSMMMG00000024465)	ENSMMMG00000024466 ##31	TREML2 (ENSMMMG00000024467) #31	ENSMMMG00000024468 ##31	ENSMMMG00000024470 #32	TREM1 (ENSMMMG00000024471) #32	ENSMMMG00000024472	FOXP4 (ENSMMMG00000024474) #33
Eurasian red squirrel	MODERN SPECIES	16	RNF8 (ENSSVLG00005005392) #8	CMTR1 (ENSSVLG00005005343) #9	CCDC167 (ENSSVLG00005005310) #10	MDGA1 (ENSSVLG00005005288) #11	ZFAND3 (ENSSVLG00005005216) #12	BTBD9 (ENSSVLG00005005131) #14	GLO1 (ENSSVLG00005005083) #15	DNAH8 (ENSSVLG00005004765) #16	GLP1R (ENSSVLG00005004680) #17	SAYSD1 (ENSSVLG00005004663) #18	ENSSVLG00005004649	KCNK5 (ENSSVLG00005004634) #19	KCNK17 (ENSSVLG00005004609)	KCNK16 (ENSSVLG00005004550) #20	KIF6 (ENSSVLG00005004420) #21	DAAM2 (ENSSVLG00005004331) #22	MOCS1 (ENSSVLG00005004277) #23	ENSSVLG00005004226	LRFN2 (ENSSVLG00005004197) #24	UNC5CL (ENSSVLG00005013061) #25	ENSSVLG00005012983	APOBEC2 (ENSSVLG00005012947) #27	OARD1 (ENSSVLG00005012803) #28	NFYA (ENSSVLG00005012623) #29	ENSSVLG00005012496	TREML1 (ENSSVLG00005012295) #30	TREM2 (ENSSVLG00005012059)	ENSSVLG00005011937 ##31	TREML2 (ENSSVLG00005011856) #31	ENSSVLG00005011768 #32	ENSSVLG00005011713
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00730000111479.b	ENSGT00940000157472 #7	ENSGT00400000022349 #8	ENSGT00940000157172 #9	ENSGT00390000010210 #10	ENSGT00940000159201 #11	ENSGT00390000014679 #12	ENSGT00940000158298 #14	ENSGT00390000009312 #15	ENSGT00940000158992 #16	ENSGT00940000161009 #17	ENSGT00390000004313 #18	ENSGT00940000162681	ENSGT00940000159813 #20	ENSGT00940000157697 #21	ENSGT00940000157801 #22	ENSGT00390000016567 #23	ENSGT00940000156417 #24	ENSGT00950000182815.b #25	ENSGT00390000012980.b #26	ENSGT00940000156616 #27	ENSGT00390000006988 #28	ENSGT00390000015714 #29	ENSGT00940000164212	ENSGT00470000042300 #30	ENSGT00470000042297	ENSGT00940000153835.a.b.d ##31	ENSGT00940000153835.a.a #31	ENSGT00470000042299 #32	ENSGT01030000234811	ENSGT00940000160187 #34
Rabbit	MODERN SPECIES	3	TMEM217 (ENSOCUG00000025067)	TBC1D22B (ENSOCUG00000009887) #7	RNF8 (ENSOCUG00000029655) #8	CMTR1 (ENSOCUG00000008098) #9	CCDC167 (ENSOCUG00000037829) #10	MDGA1 (ENSOCUG00000017890) #11	ZFAND3 (ENSOCUG00000017232) #12	BTBD9 (ENSOCUG00000032163) #14	ENSOCUG00000017258 #15	DNAH8 (ENSOCUG00000013305) #16	GLP1R (ENSOCUG00000001898) #17	SAYSD1 (ENSOCUG00000021575) #18	KIF6 (ENSOCUG00000006633) #21	KCNK17 (ENSOCUG00000006638)	KCNK16 (ENSOCUG00000006643) #20	DAAM2 (ENSOCUG00000006656) #22	MOCS1 (ENSOCUG00000006667) #23	LRFN2 (ENSOCUG00000008808) #24	UNC5CL (ENSOCUG00000011493) #25	TSPO2 (ENSOCUG00000027644) #26	APOBEC2 (ENSOCUG00000028008) #27	OARD1 (ENSOCUG00000014044) #28	NFYA (ENSOCUG00000016869) #29	ENSOCUG00000030505	ENSOCUG00000007260	ENSOCUG00000007264 #30	ENSOCUG00000007265	ENSOCUG00000025716 ##31	TREML2 (ENSOCUG00000007268) #31	ENSOCUG00000011397 #32	ENSOCUG00000029152
Pika	MODERN SPECIES	1973																DAAM2 (ENSOPRG00000012857) #22	MOCS1 (ENSOPRG00000012916) #23
Tree shrew	MODERN SPECIES	2281																DAAM2 (ENSTBEG00000017063) #22	ENSTBEG00000017510	MOCS1 (ENSTBEG00000010227) #23