Rodentia_A	ANCESTRAL SPECIES		ENSGT00550000074865 #7	ENSGT00940000159288 #8	ENSGT00950000182937.B.a #9	ENSGT00950000182824.a.a.b.b #10	ENSGT00390000005106 #11	ENSGT01050000244882.a.a.a.b #12	ENSGT00390000004770	ENSGT00940000161300 #13	ENSGT00940000161943 #14	ENSGT01100000263544.c.a.b.b #15	ENSGT00940000156659 #16	ENSGT00950000183042.a.a #17	ENSGT00940000159363 #18	ENSGT00940000153414.B #19	ENSGT00950000182914.b #20	ENSGT00940000158900 #22	ENSGT00530000063320.A #23	ENSGT00940000159482 #24	ENSGT01070000256312	ENSGT00940000154098.a.c #25	ENSGT00940000160742 #26	ENSGT00940000158422.a #27	ENSGT00940000158314 #28	ENSGT00840000129948 #29	ENSGT00530000064100 #30	ENSGT00390000006349	ENSGT00940000159193 #31	ENSGT00940000157024 #32	ENSGT00940000161204	ENSGT00530000063539.a	ENSGT00940000158263
Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00550000074865 #7	ENSGT00940000159288 #8	ENSGT00950000182937.B.a #9	ENSGT00950000182824.a.a.b.b #10	ENSGT00390000005106 #11	ENSGT01050000244882.a.a.a.b #12	ENSGT00390000004770	ENSGT00940000161300 #13	ENSGT00940000161943 #14	ENSGT01100000263544.c.a.b.b #15	ENSGT00940000156659 #16	ENSGT00950000183042.a.a #17	ENSGT00940000159363 #18	ENSGT00940000153414.B #19	ENSGT00950000182914.b #20	ENSGT00940000158900 #22	ENSGT00530000063320.A #23	ENSGT00940000159482 #24	ENSGT00940000154098.a.c #25	ENSGT00940000160742 #26	ENSGT00940000158422.a #27	ENSGT00940000158314 #28	ENSGT00840000129948 #29	ENSGT00530000064100 #30	ENSGT00390000006349	ENSGT00940000159193 #31	ENSGT00940000157024 #32	ENSGT00940000161204	ENSGT00530000063539.a	ENSGT00940000158263	ENSGT00940000154404.b
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00550000074865 #7	ENSGT00940000159288 #8	ENSGT00950000182937.B.a #9	ENSGT00950000182824.a.a.b.b #10	ENSGT00390000005106 #11	ENSGT01050000244882.a.a.a.b #12	ENSGT00390000004770	ENSGT00940000161300 #13	ENSGT00940000161943 #14	ENSGT01100000263544.c.a.b.b #15	ENSGT00940000156659 #16	ENSGT00950000183042.a.a #17	ENSGT00940000159363 #18	ENSGT00940000153414.B #19	ENSGT00950000182914.b #20	ENSGT00940000158900 #22	ENSGT00530000063320.A #23	ENSGT00940000159482 #24	ENSGT00940000154098.a.c #25	ENSGT00940000160742 #26	ENSGT00940000158422.a #27	ENSGT00940000158314 #28	ENSGT00840000129948 #29	ENSGT00530000064100 #30	ENSGT00390000006349	ENSGT00940000159193 #31	ENSGT00940000157024 #32	ENSGT00940000161204	ENSGT00530000063539.a	ENSGT00940000158263	ENSGT00940000154404.b
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00550000074865 #7	ENSGT00940000159288 #8	ENSGT00950000182937.B.a #9	ENSGT00950000182824.a.a.b.b #10	ENSGT00390000005106 #11	ENSGT01050000244882.a.a.a.b #12	ENSGT00390000004770	ENSGT00940000161300 #13	ENSGT00940000161943 #14	ENSGT01100000263544.c.a.b.b #15	ENSGT00940000156659 #16	ENSGT00950000183042.a.a #17	ENSGT00940000159363 #18	ENSGT00940000153414.B #19	ENSGT00950000182914.b #20	ENSGT00940000158900 #22	ENSGT00530000063320.A #23	ENSGT00940000159482 #24	ENSGT00940000154098.a.c #25	ENSGT00940000160742 #26	ENSGT00940000158422.a #27	ENSGT00940000158314 #28	ENSGT00840000129948 #29	ENSGT00530000064100 #30	ENSGT00390000006349	ENSGT00940000159193 #31	ENSGT00940000157024 #32	ENSGT00530000063539.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692
Degu	MODERN SPECIES	172	EIF2D (ENSODEG00000005533) #7	RASSF5 (ENSODEG00000007254) #8	IKBKE (ENSODEG00000005963) #9	ENSODEG00000007417 #10	ENSODEG00000005913 #11	AVPR1B (ENSODEG00000006394) #12	CTSE (ENSODEG00000005548) #13	RAB7B (ENSODEG00000005589) #14	SLC26A9 (ENSODEG00000005539) #15	PM20D1 (ENSODEG00000005792) #16	SLC41A1 (ENSODEG00000006495) #17	RAB29 (ENSODEG00000006357) #18	ENSODEG00000005090 #19	SLC45A3 (ENSODEG00000007692) #20	ENSODEG00000019457 #21	ELK4 (ENSODEG00000006084) #22	MFSD4A (ENSODEG00000005247) #23	CDK18 (ENSODEG00000005608) #24	ENSODEG00000005112 #25	KLHDC8A (ENSODEG00000006709) #26	NUAK2 (ENSODEG00000006060) #27	TMCC2 (ENSODEG00000005555) #28	DSTYK (ENSODEG00000007490) #29	RBBP5 (ENSODEG00000005136) #30	CNTN2 (ENSODEG00000005095) #31	NFASC (ENSODEG00000006271) #32	ENSODEG00000005507 #33	ENSODEG00000019135 #34
Long-tailed chinchilla	MODERN SPECIES	113	EIF2D (ENSCLAG00000014401) #7	RASSF5 (ENSCLAG00000014485) #8	IKBKE (ENSCLAG00000013208) #9	ENSCLAG00000012031 #10	ENSCLAG00000014908 #11	AVPR1B (ENSCLAG00000013862) #12	RHEX (ENSCLAG00000013012)	CTSE (ENSCLAG00000012938) #13	RAB7B (ENSCLAG00000012958) #14	SLC26A9 (ENSCLAG00000012220) #15	PM20D1 (ENSCLAG00000012926) #16	SLC41A1 (ENSCLAG00000010933) #17	RAB29 (ENSCLAG00000010484) #18	NUCKS1 (ENSCLAG00000017127) #19	SLC45A3 (ENSCLAG00000014118) #20	ELK4 (ENSCLAG00000012506) #22	MFSD4A (ENSCLAG00000013803) #23	CDK18 (ENSCLAG00000010383) #24	LEMD1 (ENSCLAG00000015190) #25	KLHDC8A (ENSCLAG00000015610) #26	NUAK2 (ENSCLAG00000012570) #27	TMCC2 (ENSCLAG00000016468) #28	DSTYK (ENSCLAG00000014831) #29	RBBP5 (ENSCLAG00000014383) #30	TMEM81 (ENSCLAG00000013114)	CNTN2 (ENSCLAG00000011919) #31	NFASC (ENSCLAG00000012040) #32	MDM4 (ENSCLAG00000011995)	PIK3C2B (ENSCLAG00000013032)	PPP1R15B (ENSCLAG00000012864)	PLEKHA6 (ENSCLAG00000011288)
Guinea pig	MODERN SPECIES	12	EIF2D (ENSCPOG00000008935) #7	RASSF5 (ENSCPOG00000008933) #8	IKBKE (ENSCPOG00000008923) #9	ENSCPOG00000008917 #10	ENSCPOG00000006809 #11	AVPR1B (ENSCPOG00000036821) #12	RHEX (ENSCPOG00000038577)	CTSE (ENSCPOG00000009523) #13	RAB7B (ENSCPOG00000024342) #14	SLC26A9 (ENSCPOG00000009513) #15	PM20D1 (ENSCPOG00000007241) #16	SLC41A1 (ENSCPOG00000007233) #17	RAB29 (ENSCPOG00000008498) #18	NUCKS1 (ENSCPOG00000003127) #19	SLC45A3 (ENSCPOG00000022526) #20	ELK4 (ENSCPOG00000010980) #22	MFSD4A (ENSCPOG00000014691) #23	CDK18 (ENSCPOG00000005224) #24	ENSCPOG00000005220 #25	KLHDC8A (ENSCPOG00000020319) #26	NUAK2 (ENSCPOG00000011773) #27	TMCC2 (ENSCPOG00000011772) #28	DSTYK (ENSCPOG00000011764) #29	ENSCPOG00000011763 #30	CNTN2 (ENSCPOG00000011751) #31	NFASC (ENSCPOG00000011736) #32	LRRN2 (ENSCPOG00000026151)	MDM4 (ENSCPOG00000008227)	PIK3C2B (ENSCPOG00000005959)	PPP1R15B (ENSCPOG00000005954)	PLEKHA6 (ENSCPOG00000011824)
Naked mole-rat female	MODERN SPECIES	16	IKBKE (ENSHGLG00000007818) #9	ENSHGLG00000006808 #10	ENSHGLG00000008162 #11	AVPR1B (ENSHGLG00000003446) #12	RHEX (ENSHGLG00000039072)	CTSE (ENSHGLG00000003917) #13	ENSHGLG00000007519	RAB7B (ENSHGLG00000005045) #14	SLC26A9 (ENSHGLG00000013130) #15	PM20D1 (ENSHGLG00000019232) #16	SLC41A1 (ENSHGLG00000014413) #17	RAB29 (ENSHGLG00000039555) #18	ENSHGLG00000015004 #19	ENSHGLG00000049818	SLC45A3 (ENSHGLG00000005465) #20	ELK4 (ENSHGLG00000006206) #22	MFSD4A (ENSHGLG00000009280) #23	CDK18 (ENSHGLG00000015315) #24	ENSHGLG00000030280	KLHDC8A (ENSHGLG00000042583) #26	NUAK2 (ENSHGLG00000018780) #27	TMCC2 (ENSHGLG00000007340) #28	DSTYK (ENSHGLG00000006608) #29	RBBP5 (ENSHGLG00000008643) #30	TMEM81 (ENSHGLG00000009323)	CNTN2 (ENSHGLG00000019314) #31	NFASC (ENSHGLG00000008978) #32	LRRN2 (ENSHGLG00000047392)	MDM4 (ENSHGLG00000040409)	PIK3C2B (ENSHGLG00000008940)	PPP1R15B (ENSHGLG00000010479)
Sciuridae	ANCESTRAL SPECIES		ENSGT00550000074865 #7	ENSGT00940000159288 #8	ENSGT00950000182937.B.a #9	ENSGT00950000182824.a.a.b.b #10	ENSGT00390000005106 #11	ENSGT01050000244882.a.a.a.b #12	ENSGT00390000004770	ENSGT00940000161300 #13	ENSGT00940000161943 #14	ENSGT01100000263544.c.a.b.b #15	ENSGT00940000156659 #16	ENSGT00950000183042.a.a #17	ENSGT00940000159363 #18	ENSGT00940000153414.B #19	ENSGT00950000182914.b #20	ENSGT00940000158900 #22	ENSGT00530000063320.A #23	ENSGT00940000159482 #24	ENSGT01070000256312	ENSGT00940000154098.a.c #25	ENSGT00940000160742 #26	ENSGT00940000158422.a #27	ENSGT00940000158314 #28	ENSGT00840000129948 #29	ENSGT00530000064100 #30	ENSGT00390000006349	ENSGT00940000159193 #31	ENSGT00940000157024 #32	ENSGT00940000161204	ENSGT00530000063539.a	ENSGT00940000158263
Marmotini	ANCESTRAL SPECIES	21	ENSGT00550000074865 #7	ENSGT00940000159288 #8	ENSGT00950000182937.B.a #9	ENSGT00950000182824.a.a.b.b #10	ENSGT00390000005106 #11	ENSGT01050000244882.a.a.a.b #12	ENSGT00390000004770	ENSGT00940000161300 #13	ENSGT00940000161943 #14	ENSGT01100000263544.c.a.b.b #15	ENSGT00940000156659 #16	ENSGT00950000183042.a.a #17	ENSGT00940000159363 #18	ENSGT00940000153414.B #19	ENSGT00950000182914.b #20	ENSGT00940000158900 #22	ENSGT00530000063320.A #23	ENSGT00940000159482 #24	ENSGT00940000154098.a.c #25	ENSGT00940000160742 #26	ENSGT00940000158422.a #27	ENSGT00940000158314 #28	ENSGT00840000129948 #29	ENSGT00530000064100 #30	ENSGT00390000006349	ENSGT00940000159193 #31	ENSGT00940000157024 #32
Marmotini_b	ANCESTRAL SPECIES	63	ENSGT00550000074865 #7	ENSGT00940000159288 #8	ENSGT00950000182937.B.a #9	ENSGT00950000182824.a.a.b.b #10	ENSGT00390000005106 #11	ENSGT01050000244882.a.a.a.b #12	ENSGT00390000004770	ENSGT00940000161300 #13	ENSGT00940000161943 #14	ENSGT01100000263544.c.a.b.b #15	ENSGT00940000156659 #16	ENSGT00950000183042.a.a #17	ENSGT00940000159363 #18	ENSGT00940000153414.B #19	ENSGT00950000182914.b #20	ENSGT00940000158900 #22	ENSGT00530000063320.A #23	ENSGT00940000159482 #24	ENSGT00940000154098.a.c #25	ENSGT00940000160742 #26	ENSGT00940000158422.a #27	ENSGT00940000158314 #28	ENSGT00840000129948 #29	ENSGT00530000064100 #30	ENSGT00390000006349	ENSGT00940000159193 #31	ENSGT00940000157024 #32
Squirrel	MODERN SPECIES	157	DYRK3 (ENSSTOG00000006353)	EIF2D (ENSSTOG00000006329) #7	RASSF5 (ENSSTOG00000006317) #8	ENSSTOG00000021544 #9	ENSSTOG00000006198 #10	ENSSTOG00000027769 #11	AVPR1B (ENSSTOG00000027172) #12	CTSE (ENSSTOG00000009579) #13	RAB7B (ENSSTOG00000020708) #14	SLC26A9 (ENSSTOG00000007661) #15	PM20D1 (ENSSTOG00000009299) #16	SLC41A1 (ENSSTOG00000009287) #17	RAB29 (ENSSTOG00000009275) #18	NUCKS1 (ENSSTOG00000009264) #19	SLC45A3 (ENSSTOG00000007068) #20	ELK4 (ENSSTOG00000014796) #22	MFSD4A (ENSSTOG00000014788) #23	CDK18 (ENSSTOG00000028817) #24	ENSSTOG00000034719 #25	KLHDC8A (ENSSTOG00000011283) #26	NUAK2 (ENSSTOG00000026121) #27	TMCC2 (ENSSTOG00000002699) #28	DSTYK (ENSSTOG00000002673) #29	RBBP5 (ENSSTOG00000002654) #30	CNTN2 (ENSSTOG00000004555) #31	NFASC (ENSSTOG00000002615) #32
Arctic ground squirrel	MODERN SPECIES	49	EIF2D (ENSUPAG00010014904) #7	RASSF5 (ENSUPAG00010014859) #8	IKBKE (ENSUPAG00010014821) #9	ENSUPAG00010014755 #10	ENSUPAG00010014738 #11	AVPR1B (ENSUPAG00010014724) #12	ENSUPAG00010014715	CTSE (ENSUPAG00010014670) #13	RAB7B (ENSUPAG00010014589) #14	SLC26A9 (ENSUPAG00010014561) #15	PM20D1 (ENSUPAG00010014516) #16	SLC41A1 (ENSUPAG00010014492) #17	RAB29 (ENSUPAG00010014481) #18	NUCKS1 (ENSUPAG00010014469) #19	SLC45A3 (ENSUPAG00010014458) #20	ELK4 (ENSUPAG00010014446) #22	MFSD4A (ENSUPAG00010014359) #23	CDK18 (ENSUPAG00010014325) #24	LEMD1 (ENSUPAG00010014304) #25	KLHDC8A (ENSUPAG00010014297) #26	NUAK2 (ENSUPAG00010014287) #27	TMCC2 (ENSUPAG00010014257) #28	DSTYK (ENSUPAG00010014219) #29	RBBP5 (ENSUPAG00010014156) #30	TMEM81 (ENSUPAG00010014151)	CNTN2 (ENSUPAG00010014130) #31	NFASC (ENSUPAG00010013868) #32
Alpin marmot	MODERN SPECIES	12	EIF2D (ENSMMMG00000003360) #7	RASSF5 (ENSMMMG00000003532) #8	IKBKE (ENSMMMG00000003569) #9	ENSMMMG00000003630 #10	ENSMMMG00000003704 #11	AVPR1B (ENSMMMG00000003719) #12	RHEX (ENSMMMG00000003734)	CTSE (ENSMMMG00000003747) #13	RAB7B (ENSMMMG00000003773) #14	SLC26A9 (ENSMMMG00000003875) #15	PM20D1 (ENSMMMG00000003926) #16	SLC41A1 (ENSMMMG00000003973) #17	RAB29 (ENSMMMG00000004000) #18	NUCKS1 (ENSMMMG00000004012) #19	SLC45A3 (ENSMMMG00000004036) #20	ELK4 (ENSMMMG00000004051) #22	MFSD4A (ENSMMMG00000004071) #23	CDK18 (ENSMMMG00000004179) #24	LEMD1 (ENSMMMG00000004248) #25	KLHDC8A (ENSMMMG00000004257) #26	NUAK2 (ENSMMMG00000004276) #27	TMCC2 (ENSMMMG00000004302) #28	DSTYK (ENSMMMG00000004344) #29	RBBP5 (ENSMMMG00000004421) #30	TMEM81 (ENSMMMG00000004488)	CNTN2 (ENSMMMG00000004499) #31	NFASC (ENSMMMG00000004534) #32	ENSMMMG00000004813	ENSMMMG00000004816	ENSMMMG00000004823	F13B (ENSMMMG00000004870)
Eurasian red squirrel	MODERN SPECIES	3	RASSF5 (ENSSVLG00005024170) #8	IKBKE (ENSSVLG00005024322) #9	ENSSVLG00005024367 #10	ENSSVLG00005024444 #11	ENSSVLG00005024519	AVPR1B (ENSSVLG00005024532) #12	RHEX (ENSSVLG00005024556)	CTSE (ENSSVLG00005024594) #13	RAB7B (ENSSVLG00005024662) #14	SLC26A9 (ENSSVLG00005024704) #15	PM20D1 (ENSSVLG00005024768) #16	SLC41A1 (ENSSVLG00005024830) #17	RAB29 (ENSSVLG00005024859) #18	NUCKS1 (ENSSVLG00005024900) #19	SLC45A3 (ENSSVLG00005024932) #20	ELK4 (ENSSVLG00005005363) #22	MFSD4A (ENSSVLG00005005415) #23	CDK18 (ENSSVLG00005005665) #24	ENSSVLG00005005816	LEMD1 (ENSSVLG00005005835) #25	KLHDC8A (ENSSVLG00005005877) #26	NUAK2 (ENSSVLG00005005904) #27	TMCC2 (ENSSVLG00005005955) #28	DSTYK (ENSSVLG00005006109) #29	ENSSVLG00005006171	RBBP5 (ENSSVLG00005006207) #30	TMEM81 (ENSSVLG00005006251)	CNTN2 (ENSSVLG00005006288) #31	NFASC (ENSSVLG00005006491) #32	LRRN2 (ENSSVLG00005006839)	MDM4 (ENSSVLG00005006908)