Rodentia_A	ANCESTRAL SPECIES	23	ENSGT00940000161402	ENSGT00940000159026	ENSGT00940000158784	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a #7	ENSGT00390000007354 #8	ENSGT00940000158788 #9	ENSGT00550000074846 #12	ENSGT00390000006029 #13	ENSGT00390000016167 #14	ENSGT00940000156997 #15	ENSGT00390000018830 #16	ENSGT01030000234535.C #18	ENSGT01030000234539.a.a.b.b #19	ENSGT00940000157302 #22	ENSGT00390000002428.a.g.b	ENSGT00940000155805 #23	ENSGT00510000047648 #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #29	ENSGT00940000159814 #30	ENSGT00940000153432.A.b #31	ENSGT00940000159872 #32	ENSGT00390000008772 #33	ENSGT00390000018741	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00940000159394	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01050000244995
Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00940000161402	ENSGT00940000159026	ENSGT00940000158784	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a #7	ENSGT00390000007354 #8	ENSGT00940000158788 #9	ENSGT00550000074846 #12	ENSGT00390000006029.q #13	ENSGT00390000016167 #14	ENSGT00940000156997 #15	ENSGT00390000018830 #16	ENSGT01030000234535.C #18	ENSGT01030000234539.a.a.b.b #19	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648 #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #29	ENSGT00940000159814 #30	ENSGT00940000153432.A.b #31	ENSGT00940000159872 #32	ENSGT00390000008772 #33	ENSGT00390000018741	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00940000159394	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01050000244995	ENSGT00950000183005.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00940000159026	ENSGT00940000158784	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a #7	ENSGT00390000007354 #8	ENSGT00940000158788 #9	ENSGT00550000074846 #12	ENSGT00390000006029.p ##13	ENSGT00390000006029.q #13	ENSGT00390000016167 #14	ENSGT00940000156997 #15	ENSGT00390000018830 #16	ENSGT01030000234535.C #18	ENSGT01030000234539.a.a.b.b #19	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648 #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #29	ENSGT00940000159814 #30	ENSGT00940000153432.A.b #31	ENSGT00940000159872 #32	ENSGT00390000008772 #33	ENSGT00390000018741	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00940000159394	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01050000244995	ENSGT00950000183005.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00940000161402	ENSGT00940000159026	ENSGT00940000158784	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a #7	ENSGT00390000007354 #8	ENSGT00940000158788 #9	ENSGT00550000074846 #12	ENSGT00390000006029.q #13	ENSGT00390000016167 #14	ENSGT00940000156997 #15	ENSGT00390000018830 #16	ENSGT01030000234535.C #18	ENSGT01030000234539.a.a.b.b #19	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648 #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #29	ENSGT00940000159814 #30	ENSGT00940000153432.A.b #31	ENSGT00940000159872 #32	ENSGT00390000008772 #33	ENSGT00390000018741	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00940000159394	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01100000263809	ENSGT00950000183005.a.a
Degu	MODERN SPECIES	44	SIGLEC15 (ENSODEG00000018459) #7	EPG5 (ENSODEG00000018404) #8	PSTPIP2 (ENSODEG00000018461) #9	ENSODEG00000018334 #10	ENSODEG00000020534 #11	ATP5F1A (ENSODEG00000018359) #12	ENSODEG00000018366 #13	C18orf25 (ENSODEG00000018458) #14	RNF165 (ENSODEG00000018412) #15	LOXHD1 (ENSODEG00000018482) #16	ENSODEG00000020498 #17	ST8SIA5 (ENSODEG00000018352) #18	ENSODEG00000018432 #19	ENSODEG00000020536 #20	ENSODEG00000018457 #21	KATNAL2 (ENSODEG00000018481) #22	HDHD2 (ENSODEG00000018388) #23	IER3IP1 (ENSODEG00000018375) #24	SKOR2 (ENSODEG00000018363) #25	ENSODEG00000018367 #26	ENSODEG00000018340 #27	ENSODEG00000018377 #28	SMAD2 (ENSODEG00000018373) #29	ZBTB7C (ENSODEG00000018417) #30	CTIF (ENSODEG00000018390) #31	SMAD7 (ENSODEG00000018424) #32	DYM (ENSODEG00000018486) #33	ENSODEG00000018393 #34	ENSODEG00000018365 #35	ENSODEG00000018460 #36	ENSODEG00000020491 #37
Long-tailed chinchilla	MODERN SPECIES	109	ENSCLAG00000008619	SETBP1 (ENSCLAG00000010509)	SLC14A2 (ENSCLAG00000012015)	SLC14A1 (ENSCLAG00000007299)	SIGLEC15 (ENSCLAG00000007394) #7	EPG5 (ENSCLAG00000009230) #8	PSTPIP2 (ENSCLAG00000011006) #9	ENSCLAG00000015055	ATP5F1A (ENSCLAG00000014431) #12	HAUS1 (ENSCLAG00000012155) ##13	C18orf25 (ENSCLAG00000008611) #14	RNF165 (ENSCLAG00000009534) #15	LOXHD1 (ENSCLAG00000011718) #16	ST8SIA5 (ENSCLAG00000012639) #18	ENSCLAG00000011621 #19	KATNAL2 (ENSCLAG00000013657) #22	HDHD2 (ENSCLAG00000006391) #23	IER3IP1 (ENSCLAG00000007652) #24	SKOR2 (ENSCLAG00000012544) #25	SMAD2 (ENSCLAG00000011258) #29	ZBTB7C (ENSCLAG00000012082) #30	CTIF (ENSCLAG00000008174) #31	SMAD7 (ENSCLAG00000007063) #32	DYM (ENSCLAG00000008080) #33	C18orf32 (ENSCLAG00000008711)	ENSCLAG00000008914	ENSCLAG00000010369	LIPG (ENSCLAG00000011863)	ENSCLAG00000007196	ENSCLAG00000008597	ACAA2 (ENSCLAG00000008998)
Guinea pig	MODERN SPECIES	14	ENSCPOG00000040621	PIK3C3 (ENSCPOG00000004375)	RIT2 (ENSCPOG00000009357)	SYT4 (ENSCPOG00000009941)	SETBP1 (ENSCPOG00000011164)	ENSCPOG00000007976	SLC14A1 (ENSCPOG00000007979)	EPG5 (ENSCPOG00000012114) #8	PSTPIP2 (ENSCPOG00000004876) #9	ATP5F1A (ENSCPOG00000012719) #12	HAUS1 (ENSCPOG00000012723) ##13	RNF165 (ENSCPOG00000009298) #15	LOXHD1 (ENSCPOG00000009824) #16	ST8SIA5 (ENSCPOG00000030161) #18	ENSCPOG00000003067 #19	KATNAL2 (ENSCPOG00000008150) #22	HDHD2 (ENSCPOG00000030325) #23	IER3IP1 (ENSCPOG00000040200) #24	SKOR2 (ENSCPOG00000021920) #25	SMAD2 (ENSCPOG00000013398) #29	ZBTB7C (ENSCPOG00000040464) #30	CTIF (ENSCPOG00000001049) #31	SMAD7 (ENSCPOG00000030295) #32	DYM (ENSCPOG00000013484) #33	C18orf32 (ENSCPOG00000034745)	ENSCPOG00000019337	LIPG (ENSCPOG00000008890)	ACAA2 (ENSCPOG00000004734)	MYO5B (ENSCPOG00000014213)	CFAP53 (ENSCPOG00000001668)	MBD1 (ENSCPOG00000001671)
Naked mole-rat female	MODERN SPECIES	9	ENSHGLG00000040364	ENSHGLG00000033588	ENSHGLG00000046959	ENSHGLG00000005880	SLC14A1 (ENSHGLG00000007316)	PSTPIP2 (ENSHGLG00000005740) #9	ENSHGLG00000009522 #12	ENSHGLG00000036850 #13	ENSHGLG00000036445 #12	C18orf25 (ENSHGLG00000041108) #14	RNF165 (ENSHGLG00000035767) #15	ENSHGLG00000006211 #16	ST8SIA5 (ENSHGLG00000040367) #18	PIAS2 (ENSHGLG00000015588) #19	ENSHGLG00000040167	ENSHGLG00000034217 #22	HDHD2 (ENSHGLG00000010130) #23	ENSHGLG00000048898 #24	SKOR2 (ENSHGLG00000035792) #25	SMAD2 (ENSHGLG00000008711) #29	ENSHGLG00000031912	ENSHGLG00000042101 #32	ENSHGLG00000048272	ENSHGLG00000040505	ENSHGLG00000015030 #33	ENSHGLG00000009081	ENSHGLG00000036153	ENSHGLG00000047452	LIPG (ENSHGLG00000010224)	ENSHGLG00000006292	ENSHGLG00000038847
Sciuridae	ANCESTRAL SPECIES	31	ENSGT00940000161402	ENSGT00940000159026	ENSGT00940000158784	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a #7	ENSGT00390000007354 #8	ENSGT00940000158788 #9	ENSGT00550000074846.z #12	ENSGT00390000006029 #13	ENSGT00390000016167 #14	ENSGT00940000156997 #15	ENSGT00390000018830 #16	ENSGT01030000234535.C #18	ENSGT01030000234539.a.a.b.b #19	ENSGT00940000157302 #22	ENSGT00390000002428.a.g.b	ENSGT00940000155805 #23	ENSGT00510000047648 #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #29	ENSGT00940000159814 #30	ENSGT00940000153432.A.b #31	ENSGT00940000159872 #32	ENSGT00390000008772 #33	ENSGT00390000018741	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00940000159394	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01050000244995
Marmotini	ANCESTRAL SPECIES	31	ENSGT00940000161402	ENSGT00940000159026	ENSGT00940000158784	ENSGT00390000018729.a.b	ENSGT00390000018729.a.a	ENSGT01080000257333.E.o.a #7	ENSGT00390000007354 #8	ENSGT00940000158788 #9	ENSGT00550000074846.z #12	ENSGT00390000006029 #13	ENSGT00390000016167 #14	ENSGT00940000156997 #15	ENSGT00390000018830 #16	ENSGT01030000234535.C #18	ENSGT01030000234539.a.a.b.b #19	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648 #24	ENSGT00940000160474 #25	ENSGT01030000236530	ENSGT00940000153499.a #29	ENSGT00940000159814 #30	ENSGT00940000153432.A.b #31	ENSGT00940000159872 #32	ENSGT00390000008772 #33	ENSGT00390000018741	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00940000159394	ENSGT01030000234626.D	ENSGT00940000155402.a.b	ENSGT01050000244995
Marmotini_b	ANCESTRAL SPECIES	307																ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648 #24	ENSGT00940000160474 #25
Arctic ground squirrel	MODERN SPECIES	837																KATNAL2 (ENSUPAG00010002731) #22	ENSUPAG00010002721 #24	HDHD2 (ENSUPAG00010002679) #23	SKOR2 (ENSUPAG00010002670) #25
Squirrel	MODERN SPECIES	558																KATNAL2 (ENSSTOG00000013527) #22	HDHD2 (ENSSTOG00000008527) #23	SKOR2 (ENSSTOG00000021346) #25
Alpin marmot	MODERN SPECIES	10	RIT2 (ENSMMMG00000007046)	SYT4 (ENSMMMG00000007022)	SETBP1 (ENSMMMG00000006996)	SLC14A2 (ENSMMMG00000006939)	SLC14A1 (ENSMMMG00000006914)	SIGLEC15 (ENSMMMG00000006905) #7	EPG5 (ENSMMMG00000006854) #8	PSTPIP2 (ENSMMMG00000006839) #9	ATP5F1A (ENSMMMG00000006823) #12	HAUS1 (ENSMMMG00000006810) #13	C18orf25 (ENSMMMG00000006777) #14	RNF165 (ENSMMMG00000006757) #15	LOXHD1 (ENSMMMG00000006669) #16	ST8SIA5 (ENSMMMG00000006633) #18	PIAS2 (ENSMMMG00000006515) #19	KATNAL2 (ENSMMMG00000006351) #22	HDHD2 (ENSMMMG00000006342) #23	ENSMMMG00000006338	SMAD2 (ENSMMMG00000006290) #29	ZBTB7C (ENSMMMG00000006278) #30	CTIF (ENSMMMG00000006232) #31	SMAD7 (ENSMMMG00000006202) #32	DYM (ENSMMMG00000006170) #33	C18orf32 (ENSMMMG00000006157)	ENSMMMG00000006135	LIPG (ENSMMMG00000006111)	ACAA2 (ENSMMMG00000006091)	MYO5B (ENSMMMG00000005915)	CFAP53 (ENSMMMG00000005890)	MBD1 (ENSMMMG00000005802)	CXXC1 (ENSMMMG00000005766)
Eurasian red squirrel	MODERN SPECIES	4	ENSSVLG00005015263	SETBP1 (ENSSVLG00005015356)	ENSSVLG00005015418	SLC14A1 (ENSSVLG00005015590)	SIGLEC15 (ENSSVLG00005015863) #7	EPG5 (ENSSVLG00005015968) #8	PSTPIP2 (ENSSVLG00005016011) #9	ENSSVLG00005016239	ATP5F1A (ENSSVLG00005016277) #12	HAUS1 (ENSSVLG00005016339) #13	C18orf25 (ENSSVLG00005016394) #14	RNF165 (ENSSVLG00005016476) #15	LOXHD1 (ENSSVLG00005016724) #16	ST8SIA5 (ENSSVLG00005018346) #18	ENSSVLG00005018588 #19	KATNAL2 (ENSSVLG00005018737) #22	ENSSVLG00005019019	HDHD2 (ENSSVLG00005019073) #23	ENSSVLG00005019150 #24	SKOR2 (ENSSVLG00005019180) #25	ENSSVLG00005019379 #29	ZBTB7C (ENSSVLG00005019433) #30	CTIF (ENSSVLG00005019619) #31	SMAD7 (ENSSVLG00005019787) #32	DYM (ENSSVLG00005019977) #33	ENSSVLG00005020326	ENSSVLG00005020364	LIPG (ENSSVLG00005020493)	ACAA2 (ENSSVLG00005020577)	MYO5B (ENSSVLG00005020740)	CFAP53 (ENSSVLG00005021141)