Mus_A	ANCESTRAL SPECIES	19	ENSGT01100000265037	ENSGT00950000183211.a.b	ENSGT00940000158784 #8	ENSGT00390000018729.a.b #10	ENSGT00390000018729.a.a #11	ENSGT01080000257333.E.o.a #12	ENSGT00390000007354 #13	ENSGT00940000158788 #14	ENSGT00550000074846 #15	ENSGT00390000006029 #16	ENSGT00390000016167 #17	ENSGT00940000156997	ENSGT00390000018830 #18	ENSGT01030000234535.C #19	ENSGT01030000234539.a.a.b.b #21	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648.c #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #26	ENSGT00940000159814 #27	ENSGT00940000153432.A.b #28	ENSGT00940000159872 #29	ENSGT00390000008772 #30	ENSGT00390000018741 #31	ENSGT00950000183010.a.b.a.b.b.b ##9	ENSGT00940000159394 #33	ENSGT01030000234626.D #34	ENSGT00940000155402.a.b #35	ENSGT01100000263809	ENSGT00940000168426 #36
Mus_B	ANCESTRAL SPECIES	19	ENSGT00950000183211.a.b	ENSGT00940000158784 #8	ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d #9	ENSGT00390000018729.a.b #10	ENSGT00390000018729.a.a #11	ENSGT01080000257333.E.o.a #12	ENSGT00390000007354 #13	ENSGT00940000158788 #14	ENSGT00550000074846 #15	ENSGT00390000006029 #16	ENSGT00390000016167 #17	ENSGT00940000156997	ENSGT00390000018830 #18	ENSGT01030000234535.C #19	ENSGT01030000234539.a.a.b.b #21	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648.c #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #26	ENSGT00940000159814 #27	ENSGT00940000153432.A.b #28	ENSGT00940000159872 #29	ENSGT00390000008772 #30	ENSGT00390000018741 #31	ENSGT00950000183010.a.b.a.b.b.b ##9	ENSGT00940000159394 #33	ENSGT01030000234626.D #34	ENSGT00940000155402.a.b #35	ENSGT01100000263809	ENSGT00940000168426 #36
Mus_C	ANCESTRAL SPECIES	16	ENSGT00950000183211.a.b	ENSGT00940000158784 #8	ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d #9	ENSGT00390000018729.a.b #10	ENSGT00390000018729.a.a #11	ENSGT01080000257333.E.o.a #12	ENSGT00390000007354 #13	ENSGT00940000158788 #14	ENSGT00550000074846 #15	ENSGT00390000006029 #16	ENSGT00390000016167 #17	ENSGT00940000156997	ENSGT00390000018830 #18	ENSGT01030000234535.C #19	ENSGT01030000234539.a.a.b.b #21	ENSGT00940000157302 #22	ENSGT00940000155805 #23	ENSGT00510000047648.c #24	ENSGT00940000160474 #25	ENSGT00940000153499.a #26	ENSGT00940000159814 #27	ENSGT00940000153432.A.b #28	ENSGT00940000159872 #29	ENSGT00390000008772 #30	ENSGT00390000018741 #31	ENSGT00950000183010.a.b.a.b.b.b ##9	ENSGT00940000159394 #33	ENSGT01030000234626.D #34	ENSGT00940000155402.a.b #35	ENSGT01100000263809	ENSGT00950000183005.a.a
spretus	MODERN SPECIES	9	Eola1 (MGP_SPRETEiJ_G0023343) #7	Setbp1 (MGP_SPRETEiJ_G0023342) #8	MGP_SPRETEiJ_G0023341 #9	Slc14a2 (MGP_SPRETEiJ_G0023340) #10	Slc14a1 (MGP_SPRETEiJ_G0023339) #11	Siglec15 (MGP_SPRETEiJ_G0023338) #12	Epg5 (MGP_SPRETEiJ_G0023337) #13	Pstpip2 (MGP_SPRETEiJ_G0023336) #14	Atp5a1 (MGP_SPRETEiJ_G0023335) #15	Haus1 (MGP_SPRETEiJ_G0023334) #16	8030462N17Rik (MGP_SPRETEiJ_G0023333) #17	Loxhd1 (MGP_SPRETEiJ_G0023331) #18	St8sia5 (MGP_SPRETEiJ_G0023330) #19	MGP_SPRETEiJ_G0023329 #20	Pias2 (MGP_SPRETEiJ_G0023328) #21	Katnal2 (MGP_SPRETEiJ_G0023327) #22	Hdhd2 (MGP_SPRETEiJ_G0023326) #23	MGP_SPRETEiJ_G0023325 #24	Skor2 (MGP_SPRETEiJ_G0023324) #25	Smad2 (MGP_SPRETEiJ_G0023323) #26	Zbtb7c (MGP_SPRETEiJ_G0023322) #27	Ctif (MGP_SPRETEiJ_G0023321) #28	Smad7 (MGP_SPRETEiJ_G0023320) #29	Dym (MGP_SPRETEiJ_G0023319) #30	BC031181 (MGP_SPRETEiJ_G0023318) #31	MGP_SPRETEiJ_G0023317 #32	Lipg (MGP_SPRETEiJ_G0023316) #33	Acaa2 (MGP_SPRETEiJ_G0023315) #34	Myo5b (MGP_SPRETEiJ_G0023314) #35	Cfap53 (MGP_SPRETEiJ_G0023313) #36	Cxxc1 (MGP_SPRETEiJ_G0023312) #37
Steppe mouse	MODERN SPECIES	3130															ENSMSIG00000018626 #21	Katnal2 (ENSMSIG00000018633) #22	Hdhd2 (ENSMSIG00000018790) #23	ENSMSIG00000018819 #24	Skor2 (ENSMSIG00000018834) #25	Smad2 (ENSMSIG00000018887) #26	ENSMSIG00000018946	Zbtb7c (ENSMSIG00000018967) #27	Ctif (ENSMSIG00000019005) #28	ENSMSIG00000019110	Smad7 (ENSMSIG00000019123) #29	Dym (ENSMSIG00000019180) #30	ENSMSIG00000019247	BC031181 (ENSMSIG00000019259) #31	Rpl17 (ENSMSIG00000019275) ##9	Lipg (ENSMSIG00000019321) #33	ENSMSIG00000019349
Mouse	MODERN SPECIES	9	Pard6g (ENSMUSG00000056214)	Setbp1 (ENSMUSG00000024548) #8	Gm6133 (ENSMUSG00000090451) #9	Slc14a2 (ENSMUSG00000024552) #10	Slc14a1 (ENSMUSG00000059336) #11	Siglec15 (ENSMUSG00000091055) #12	Epg5 (ENSMUSG00000039840) #13	Pstpip2 (ENSMUSG00000025429) #14	Atp5a1 (ENSMUSG00000025428) #15	Haus1 (ENSMUSG00000041840) #16	8030462N17Rik (ENSMUSG00000047466) #17	Rnf165 (ENSMUSG00000025427)	Loxhd1 (ENSMUSG00000032818) #18	St8sia5 (ENSMUSG00000025425) #19	Pias2 (ENSMUSG00000025423) #21	Katnal2 (ENSMUSG00000025420) #22	Hdhd2 (ENSMUSG00000025421) #23	Ier3ip1 (ENSMUSG00000090000)	Skor2 (ENSMUSG00000091519) #25	Smad2 (ENSMUSG00000024563) #26	Zbtb7c (ENSMUSG00000044646) #27	Ctif (ENSMUSG00000052928) #28	Smad7 (ENSMUSG00000025880) #29	Dym (ENSMUSG00000035765) #30	BC031181 (ENSMUSG00000036299) #31	Rpl17 (ENSMUSG00000062328) ##9	Lipg (ENSMUSG00000053846) #33	Acaa2 (ENSMUSG00000036880) #34	Myo5b (ENSMUSG00000025885) #35	Cfap53 (ENSMUSG00000035394) #36	Mbd1 (ENSMUSG00000024561)
Ryukyu mouse	MODERN SPECIES	9	Setbp1 (MGP_CAROLIEiJ_G0022429) #8	MGP_CAROLIEiJ_G0022428 ##9	Slc14a2 (MGP_CAROLIEiJ_G0022427) #10	Slc14a1 (MGP_CAROLIEiJ_G0022426) #11	Siglec15 (MGP_CAROLIEiJ_G0022425) #12	MGP_CAROLIEiJ_G0022424 #13	Pstpip2 (MGP_CAROLIEiJ_G0022423) #14	Atp5a1 (MGP_CAROLIEiJ_G0022422) #15	Haus1 (MGP_CAROLIEiJ_G0022421) #16	8030462N17Rik (MGP_CAROLIEiJ_G0022420) #17	Rnf165 (MGP_CAROLIEiJ_G0022419)	Loxhd1 (MGP_CAROLIEiJ_G0022418) #18	St8sia5 (MGP_CAROLIEiJ_G0022417) #19	MGP_CAROLIEiJ_G0022416	Pias2 (MGP_CAROLIEiJ_G0022415) #21	Katnal2 (MGP_CAROLIEiJ_G0022414) #22	Hdhd2 (MGP_CAROLIEiJ_G0022413) #23	MGP_CAROLIEiJ_G0022412 #24	Skor2 (MGP_CAROLIEiJ_G0022411) #25	Smad2 (MGP_CAROLIEiJ_G0022410) #26	Zbtb7c (MGP_CAROLIEiJ_G0022409) #27	Ctif (MGP_CAROLIEiJ_G0022408) #28	Smad7 (MGP_CAROLIEiJ_G0022407) #29	Dym (MGP_CAROLIEiJ_G0022406) #30	BC031181 (MGP_CAROLIEiJ_G0022405) #31	Rpl17 (MGP_CAROLIEiJ_G0022404) ##9	Lipg (MGP_CAROLIEiJ_G0022403) #33	Acaa2 (MGP_CAROLIEiJ_G0022402) #34	Myo5b (MGP_CAROLIEiJ_G0022401) #35	Cfap53 (MGP_CAROLIEiJ_G0022400) #36	Cxxc1 (MGP_CAROLIEiJ_G0022399) #37